Citrus Sinensis ID: 010540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQSKQGLPPKKAAESDSSSTRATPSDPPLDSK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEHHccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccccccHHHHHHcccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcHccHHHHccccccEEEEEcccHccHHHHHHHHHccccEEEEEccccccEEEEEEHHHHHcccccccccccEEEccccccccccccHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEccccccccccHHHHccccccccccccccHHHHccccEEEEEccHHHHHHHHHHHHcccccccccHHEEEEEcccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MQLLNAVMATRMLTstmkngggpssegipfgsVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILqrsgtpsekkqaaaIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSqeagkggelthdeTTIISGaldltektaeeamtpiestfsldvnsklDWEAMGKILArghsrvpvysgnpknIIGLLLVKSLltvrpetetpvsavsirriprvpsdmplyDILNEFQKGSSHMAAVVKAkgksktlppmtdgkkpklneakggdcdltapllskqdektesvvvdvdrplssgsmnrlsssqrsdsttngliyasediedgeviGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSvarapssrrligqkgaanqggqskqglppkkaaesdssstratpsdppldsk
Flexible Loop (DISEMBL)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSqeagkggelthdETTIISGALDLTEKTAEEAMTpiestfsldvnsKLDWEAMGKILarghsrvpvysgNPKNIIGLLLVKSLLtvrpetetpvsavsirriprvpsdMPLYDILNEFQKGSSHMAAVVKakgksktlppmtdgkkpklneakggdCDLTapllskqdektesvvvdvdrplssgsmnrlsssqrsdsttnGLIYasediedgeVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAaassvarapssrrligqkgaanqggqskqglppkkaaesdssstratpsdppldsk
Low Complexity Region (SEG)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAgimsgltlglmslglveleILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPlssgsmnrlsssqrsdsttngLIYASediedgevigiiTLEDVFEELLQEEIVDETDEYVDVHKRIrvaaaaaassvarapssrrLIGQKGAANQGGQSKQGLPPKKAAESDSSSTRATPSDPPLDSK
Disordered region (IsUnstruct)
***************************IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQR*********AAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQE******LTHDETTIISGALDLT**********IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEF***********************************************************************************GLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAA********************************************************
Disordered Region (DISOPRED)
********A********************FGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELE**************AAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNE***********V************L*HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLL*******ESVVVDVDRPLSS***************TNGLIYASEDIEDGEVIGIITLEDVFEELL********************************************************************************
Disordered Region (DISEMBL)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQR*********AAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSS****************NGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVA***********************************************************
Disordered Region (DISPRO)
*QLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGG****TAPLLSKQ*EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAA*********************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQSKQGLPPKKAAESDSSSTRATPSDPPLDSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	508	2.2.26 [Sep-21-2011]
Q67XQ0	494	DUF21 domain-containing p	yes	no	0.923	0.949	0.784	0.0
Q4V3C7	495	DUF21 domain-containing p	no	no	0.913	0.937	0.738	0.0
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.913	0.929	0.686	1e-178
Q8VZI2	424	DUF21 domain-containing p	no	no	0.779	0.933	0.535	1e-118
Q9ZQR4	423	DUF21 domain-containing p	no	no	0.797	0.957	0.526	1e-117
Q9LTD8	500	DUF21 domain-containing p	no	no	0.797	0.81	0.490	1e-116
Q8RY60	527	DUF21 domain-containing p	no	no	0.942	0.908	0.462	1e-114
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.582	0.419	0.417	3e-61
Q9USJ3	679	Uncharacterized protein C	yes	no	0.572	0.428	0.397	1e-56
A0JPA0	769	Metal transporter CNNM4 O	yes	no	0.600	0.396	0.393	5e-56

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/482 (78%), Positives = 413/482 (85%), Gaps = 13/482 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M L+NAV A R+L+   ++ G    E IPFGS  W  YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLM 60

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGTP+EKKQAAAIFPVVQKQHQLLVTLLLCNA +ME LPIYLDKLFN+
Sbjct: 61  SLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNE 120

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILM +CYPIA+PIGKILD VL
Sbjct: 121 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVL 180

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHN+ALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct: 181 GHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 240

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVRPETET VSAV IRR
Sbjct: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRR 300

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVP+DMPLYDILNEFQKGSSHMAAVVK K     +PP T  ++   +  +  D DLTA
Sbjct: 301 IPRVPADMPLYDILNEFQKGSSHMAAVVKVK-GKSKVPPSTLLEE---HTDESNDSDLTA 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL K++   ++V+V +D+       N  S  Q ++S  +G  + SE IEDGEVIGIITL
Sbjct: 357 PLLLKREGNHDNVIVTIDKA------NGQSFFQNNESGPHGFSHTSEAIEDGEVIGIITL 410

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQSK 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASS+ARAPSSR+L+ QKG    GGQ+K
Sbjct: 411 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSRKLLAQKGT---GGQNK 467

Query: 481 QG 482
           QG
Sbjct: 468 QG 469

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/475 (73%), Positives = 392/475 (82%), Gaps = 11/475 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M  +NAV+A RML   +       SE IPFGS+ W  YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHPINAVVAARMLAG-ISQSNALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLM 59

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGTP EKKQ+AAIFPVVQKQHQLLVTLLL NA +ME LPIYLDK+FN+
Sbjct: 60  SLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNE 119

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLF GEVIPQAICTRYGLAVGAN VWLVRILM++ YPI++PI K+LDWVL
Sbjct: 120 YVAIILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVL 179

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHN+ LFRRAQLKALV+IH + AGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct: 180 GHNDPLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 239

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLD EAM KI ARGHSRVPVYS NPKN+IGLLLVKSLLTVRPET T VSAV IRR
Sbjct: 240 LDVNSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRR 299

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVP++MPLYDILNEFQKGSSHMAAVVK KGKSK  P     +    +     + +LTA
Sbjct: 300 IPRVPANMPLYDILNEFQKGSSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTA 359

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL K++   +SV+V +D+  ++G       S  S++   G  + SE+IEDG+VIGIITL
Sbjct: 360 PLLLKREGNHDSVIVRIDK--ANG------QSFISEAGRQGFSHTSEEIEDGDVIGIITL 411

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVA--AAAAASSVARAPSSRRLIGQKGAA 473
           EDVFEELLQEEIVDETDEY+DVHKRIRVA  AA A SS+ARAPS RRL+G KG+ 
Sbjct: 412 EDVFEELLQEEIVDETDEYIDVHKRIRVATVAAVAISSLARAPSGRRLLGPKGSG 466

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  624 bits (1609), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 329/479 (68%), Positives = 386/479 (80%), Gaps = 15/479 (3%)

Query: 25  SEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAA 84
           +E I FGS WWFV  G++C LVLFAGIMSGLTLGLMSLGLVELEILQ+SG+ +EKKQAAA
Sbjct: 23  AEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAA 82

Query: 85  IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
           I PVV+KQHQLLVTLLLCNAA+MEALPI LDK+F+ +VA++LSVTFVL FGE+IPQAIC+
Sbjct: 83  ILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAG 204
           RYGLAVGANF+WLVRILMIICYPIAYPIGK+LD V+GHN+ LFRRAQLKALV+IHSQEAG
Sbjct: 143 RYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDTLFRRAQLKALVSIHSQEAG 202

Query: 205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
           KGGELTH+ET IISGALDL++KTAEEAMTPIESTFSLDVN+KLDWE +GKIL+RGHSR+P
Sbjct: 203 KGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIP 262

Query: 265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
           VY GNPKNIIGLLLVKSLLTVR ETE PVS+VSIR+IPRVPSDMPLYDILNEFQKGSSHM
Sbjct: 263 VYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHM 322

Query: 325 AA--VVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLS 382
           AA   VK K K   +  +++G+ PK N       +LTAPLL  +   +  VVVD+D+ + 
Sbjct: 323 AAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHE---SHDVVVDIDK-VP 378

Query: 383 SGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDV 442
               NR  + Q++ + T  L    ED ED EVIGIITLEDVFEELLQ EIVDETD Y+DV
Sbjct: 379 KHVKNRGRNFQQNGTVTRDLPCLLEDNEDAEVIGIITLEDVFEELLQAEIVDETDVYIDV 438

Query: 443 HK--RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQSKQGLPPKKAAESDSSSTRAT 499
           HK  R+  AAAAA SS+ RA  +          ++ GQ+ + L  K+A  + + +T+ T
Sbjct: 439 HKRVRVAAAAAAAVSSITRASPAE-------IQSKVGQTVKKLVGKEARGTKNYTTKIT 490

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  424 bits (1090), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/422 (53%), Positives = 285/422 (67%), Gaps = 26/422 (6%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           +F++  +   LVLFAG+MSGLTLGLMSL LV+LE+L +SGTP  +K AA I PVV+ QH 
Sbjct: 12  FFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVVKNQHL 71

Query: 95  LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
           LLVTLL+CNAA+ME LPI+LD L   + AI++SVT +L FGE+IPQ+IC+RYGLA+GA  
Sbjct: 72  LLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIGATV 131

Query: 155 VWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDE 213
              VR+L+ IC P+A+PI K+LD++LGH  A LFRRA+LK LV  H  EAGKGGELTHDE
Sbjct: 132 APFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELTHDE 191

Query: 214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
           TTII+GAL+L+EK  ++AMTPI   F +D+N+KLD + M  IL +GHSRVPVY   P NI
Sbjct: 192 TTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTNI 251

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IGL+LVK+LLT+ P+ E PV  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct: 252 IGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQCDK 311

Query: 334 SKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSM--NRLSS 391
              LP     K   + EA+  D D      S+     +  ++   R L       NR SS
Sbjct: 312 IHPLP----SKNGSVKEAR-VDVD------SEGTPTPQERMLRTKRSLQKWKSFPNRASS 360

Query: 392 SQRSDSTTNGLIYASEDI------------EDGEVIGIITLEDVFEELLQEEIVDETDEY 439
            +    +         DI            E+ E +GIIT+EDV EELLQEEI DETD +
Sbjct: 361 FKGGSKSKKWSKDNDADILQLNGNPLPKLAEEEEAVGIITMEDVIEELLQEEIFDETDHH 420

Query: 440 VD 441
            +
Sbjct: 421 FE 422

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/412 (52%), Positives = 286/412 (69%), Gaps = 7/412 (1%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           +F++  +  +LVLFAG+MSGLTLGLMS+ LV+LE+L +SGTP ++  AA I PVV+ QH 
Sbjct: 12  FFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHL 71

Query: 95  LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
           LL TLL+CNAA+MEALPI+LD L   + AI++SVT +L FGE+IPQ++C+R+GLA+GA  
Sbjct: 72  LLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATV 131

Query: 155 VWLVRILMIICYPIAYPIGKILDWVLGHNE-ALFRRAQLKALVTIHSQEAGKGGELTHDE 213
              VR+L+ IC P+A+PI K+LD++LGH   ALFRRA+LK LV +H  EAGKGGELTHDE
Sbjct: 132 APFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDE 191

Query: 214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
           TTII+GAL+L+EK A++AMTPI  TF +D+N+KLD + M  IL +GHSRVPVY     NI
Sbjct: 192 TTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNI 251

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IGL+LVK+LLT+ P+ E  V  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct: 252 IGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCDK 311

Query: 334 SKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQ 393
              L    D     +NE +  D D        + ++  S+      P  + S+   S   
Sbjct: 312 IHPLQS-NDAANETVNEVR-VDVDYERSPQETKLKRRRSLQKWKSFPNRANSLGSRSKRW 369

Query: 394 RSDSTTNGLIYASEDI----EDGEVIGIITLEDVFEELLQEEIVDETDEYVD 441
             D+  + L      +    E+ + +GIIT+EDV EELLQEEI DETD + +
Sbjct: 370 SKDNDADILQLNEHPLPKLDEEEDAVGIITMEDVIEELLQEEIFDETDHHFE 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/434 (49%), Positives = 296/434 (68%), Gaps = 29/434 (6%)

Query: 24  SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAA 83
           ++  +P     ++VY  +   LV+FAG+MSGLTLGLMSL +VELE++ ++G P ++K A 
Sbjct: 2   AANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAE 61

Query: 84  AIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAIC 143
            I P+V+ QH LL TLL+ NA +MEALPI++D L   + AI++SVT +L FGE+IPQA+C
Sbjct: 62  KILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVC 121

Query: 144 TRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHSQE 202
           +RYGL++GA   +LVR+++I+ +P++YPI K+LD +LG  +  L  RA+LK+LV +H  E
Sbjct: 122 SRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNE 181

Query: 203 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR 262
           AGKGGELTHDETTIISGALD+++K+A++AMTP+   FSLD+N KLD + MG I + GHSR
Sbjct: 182 AGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSR 241

Query: 263 VPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSS 322
           +P+YS NP  IIG +LVK+L+ VRPE ET +  + IRR+P+V  ++PLYDILN FQ G S
Sbjct: 242 IPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRS 301

Query: 323 HMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLS 382
           HMAAVV  K  + T  P+ + K    +  K  +  L+ P L+  +   +S +  +D    
Sbjct: 302 HMAAVVGTKNHTNTNTPVHE-KSINGSPNKDANVFLSIPALNSSETSHQSPIRYID---- 356

Query: 383 SGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDV 442
                       SD             ED EVIGIITLEDV EEL+QEEI DETD+YV++
Sbjct: 357 ----------SISD-------------EDEEVIGIITLEDVMEELIQEEIYDETDQYVEL 393

Query: 443 HKRIRVAAAAAASS 456
           HKRI +    + +S
Sbjct: 394 HKRITINMPMSGNS 407

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  414 bits (1063), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/515 (46%), Positives = 319/515 (61%), Gaps = 36/515 (6%)

Query: 25  SEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAA 84
           S  IP     + +Y  I   LV FAG+M+GLTLGLMSLGLV+LE+L +SG P ++  A  
Sbjct: 2   SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query: 85  IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
           IFPVV+ QH LL TLL+ N+ +MEALPI+LDK+   ++AI+LSVT +L FGE++PQA+CT
Sbjct: 62  IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEA 203
           RYGL VGA     VR+L+++ +PI+YPI K+LDW+LG     L RRA+LK  V  H  EA
Sbjct: 122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query: 204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
           GKGG+LT DET+II+GAL+LTEKTA++AMTPI + FSL++++ L+ E +  I++ GHSRV
Sbjct: 182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query: 264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
           PVY  NP +IIGL+LVK+LL V    E P+  +S+R+IPRV   MPLYDILNEFQKG SH
Sbjct: 242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query: 324 MAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK---QDEKTESVVVDVDR- 379
           +A V K   + +  P  ++    +    K  D +L      K   Q E +E  V  ++  
Sbjct: 302 IAVVYKDLDEQEQSPETSENGIERRKNKKTKD-ELFKDSCRKPKAQFEVSEKEVFKIETG 360

Query: 380 PLSSGSMNRLSSSQRSDSTT----------NGLIYASEDIEDG---------EVIGIITL 420
              SG        Q S  T+           G  +   DIE+          EV+G+IT+
Sbjct: 361 DAKSGKSENGEEQQGSGKTSLLAAPAKKRHRGCSFCILDIENTPIPDFPTNEEVVGVITM 420

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQ--KGAANQGGQ 478
           EDV EELLQEEI+DETDEYV++H RIRV   A+  ++   PS    I Q   G+ +    
Sbjct: 421 EDVIEELLQEEILDETDEYVNIHNRIRVNMHASPENL---PSVITSITQSSSGSTSPNQT 477

Query: 479 SKQGLPPKKAAE--SDSSSTR----ATPSDPPLDS 507
           S    P        S+SS TR    ++P+  P DS
Sbjct: 478 SHMATPDSSPTTKPSNSSPTRKPSVSSPTREPSDS 512

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  236 bits (602), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 186/302 (61%), Gaps = 6/302 (1%)

Query: 38  YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQK-QHQLL 96
           Y  IS +LVL  G+ +GLTLGLM    V L+++  SG+ SEKK A  +  ++ + +H +L
Sbjct: 64  YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query: 97  VTLLLCNAASMEALPIYLDK-LFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFV 155
           VTLLL N  + E LPI LD+ L   + A++ S   ++ FGE+IPQ++C +YGL VGA F 
Sbjct: 124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query: 156 WLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDET 214
             V +LM + YP+AYPI  +LD++LG +   +++++ LK LVT+H     +   LT DE 
Sbjct: 184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query: 215 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNI 273
           TIIS  LDL  K  EE MTPIE+ F++  ++ LD + + KI   G SR+P++  N P N 
Sbjct: 242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           IG+LLV+ L++  P+   P+S   +  +P    +    +ILN FQ+G +HM  V K  G 
Sbjct: 302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGS 361

Query: 334 SK 335
           S 
Sbjct: 362 SH 363

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 187/297 (62%), Gaps = 6/297 (2%)

Query: 41  ISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQK-QHQLLVTL 99
           IS VL+L  G+ +GLT+GLM    + L++L++SG  SE+  A  +  ++++ +H +LVTL
Sbjct: 68  ISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKHWVLVTL 127

Query: 100 LLCNAASMEALPIYLDKLFNQ-YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLV 158
           LL N    E LPI  D +    + A+++S   ++ FGEVIPQA C RYGL++GA    +V
Sbjct: 128 LLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGAKLEPIV 187

Query: 159 RILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDETTII 217
             +M + +PIAYP   ILD  LG +++ +++++ LK LVT+H ++ G   +L  DE TII
Sbjct: 188 LFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLH-RDLGI-DKLNQDEVTII 245

Query: 218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS-GNPKNIIGL 276
           +  LDL EK AE  MTPIE  F+L ++  LD + +G+I+  G+SR+PV+  G P + IG+
Sbjct: 246 TAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFPHDFIGM 305

Query: 277 LLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           LL K+L+   P+ + PV   ++  +P+   +    D+LN  Q+G SHM  +  + G+
Sbjct: 306 LLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILISNSPGE 362

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score =  219 bits (557), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 186/320 (58%), Gaps = 15/320 (4%)

Query: 26  EGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAI 85
           E  P   +W  + A I  VL+  +GI SGL LGLM+L  +EL ++QR GT  EK+ A+ I
Sbjct: 172 EEKPLLPIW--LQACIIAVLLTLSGIFSGLNLGLMALDPMELRVVQRCGTEKEKRYASKI 229

Query: 86  FPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIIL-SVTFVLFFGEVIPQAICT 144
            PV +K + LL +LLL N      L   LD+L    +A +L S T ++  GE++PQA+C+
Sbjct: 230 EPVRRKGNYLLCSLLLGNVLVNTTLTALLDELIGSGLAAVLASTTGIVVLGEIVPQALCS 289

Query: 145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHN-EALFRRAQLKALVTIHSQEA 203
           R+GLAVGAN +WL RI M++ +P+AYP+ ++LD  LG     ++ R +L  ++ +    +
Sbjct: 290 RHGLAVGANTLWLTRIFMLLTFPVAYPVSRLLDCALGQEIGTVYNREKLLEMLKVTEPYS 349

Query: 204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
           G    +  +E  II GAL+L  KT E+ MT +E  F L  ++ LD+  M  I+  G++R+
Sbjct: 350 G----IVREEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYTRI 405

Query: 264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP-----SDMPLYDILNEFQ 318
           PVY     NI+ +L VK L  V P+  TP+S  +I R    P     SD  L  +L EF+
Sbjct: 406 PVYENERSNIVDILYVKDLAFVDPDDCTPLS--TITRFYSHPLHFVFSDTKLDAVLEEFK 463

Query: 319 KGSSHMAAVVKAKGKSKTLP 338
           KG SH+A V K   + +  P
Sbjct: 464 KGKSHLAIVQKVNSEGEGDP 483

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
255551477	502	conserved hypothetical protein [Ricinus	0.960	0.972	0.843	0.0
224102601	500	predicted protein [Populus trichocarpa]	0.958	0.974	0.847	0.0
356557879	489	PREDICTED: DUF21 domain-containing prote	0.960	0.997	0.823	0.0
224107237	502	predicted protein [Populus trichocarpa]	0.982	0.994	0.813	0.0
449465210	496	PREDICTED: DUF21 domain-containing prote	0.952	0.975	0.817	0.0
449528085	496	PREDICTED: DUF21 domain-containing prote	0.952	0.975	0.817	0.0
356521943	493	PREDICTED: DUF21 domain-containing prote	0.952	0.981	0.803	0.0
356564538	493	PREDICTED: DUF21 domain-containing prote	0.952	0.981	0.807	0.0
225432520	505	PREDICTED: DUF21 domain-containing prote	0.984	0.990	0.789	0.0
225436964	504	PREDICTED: putative DUF21 domain-contain	0.950	0.958	0.776	0.0

>gi|255551477|ref|XP_002516784.1| conserved hypothetical protein [Ricinus communis] gi|223543872|gb|EEF45398.1| conserved hypothetical protein [Ricinus communis]

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/497 (84%), Positives = 449/497 (90%), Gaps = 9/497 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M L+NAVMATRMLT   ++ G   SEGIPFGS+WWF+YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MHLVNAVMATRMLTMLGQSNG--VSEGIPFGSIWWFIYAGISCFLVLFAGIMSGLTLGLM 58

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLVELEILQRSGT SEKKQAAAI PVVQKQHQLLVTLLLCNAA+MEALPIYLDKLFNQ
Sbjct: 59  SLGLVELEILQRSGTSSEKKQAAAILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKLFNQ 118

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLFFGEVIPQ+IC+RYGLAVGANFVWLVRILMIICYPI+YPIGKILDWVL
Sbjct: 119 YVAIILSVTFVLFFGEVIPQSICSRYGLAVGANFVWLVRILMIICYPISYPIGKILDWVL 178

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLK LV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 179 GHNEALFRRAQLKVLVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 238

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGK+LARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 239 LDVNSKLDWEAMGKVLARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 298

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVK+K KSK   PMT G+K + N+A  GD +LT 
Sbjct: 299 IPRVPSDMPLYDILNEFQKGSSHMAAVVKSKAKSKI--PMTTGEKQEENKATAGDSELTI 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL KQDEK ++V++D+DR +S  S N+ +SSQR D+ TNGL+ +SEDIEDGEVIGIITL
Sbjct: 357 PLLVKQDEKLDTVILDMDR-VSRLSSNKQTSSQRFDAATNGLVQSSEDIEDGEVIGIITL 415

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQSK 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL   KG    G Q K
Sbjct: 416 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTANKGT---GAQGK 472

Query: 481 QGLPPKKAAESDSSSTR 497
            G   +K +E+DSSS R
Sbjct: 473 PGQALRK-SENDSSSPR 488

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102601|ref|XP_002312743.1| predicted protein [Populus trichocarpa] gi|222852563|gb|EEE90110.1| predicted protein [Populus trichocarpa]

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/497 (84%), Positives = 447/497 (89%), Gaps = 10/497 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           MQL+NAVMATRMLT   ++ G    +GIPFGSV WFVYAGISC LV+FAGIMSGLTLGLM
Sbjct: 1   MQLINAVMATRMLTVLAQSNG---EDGIPFGSVSWFVYAGISCFLVIFAGIMSGLTLGLM 57

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFNQ
Sbjct: 58  SLGLVDLEILQRSGTSTEKKQAAAILPVVQKQHQLLVTLLLCNAIAMEALPIYLDKLFNQ 117

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILMI CYP+AYPIGK+LD VL
Sbjct: 118 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMITCYPVAYPIGKVLDCVL 177

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 178 GHNEALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 237

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 238 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 297

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK LPP  DG++ + ++  G D  LT 
Sbjct: 298 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKDLPPAIDGEEQEGSKVTGRDSQLTT 357

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLLSKQDEK++SVVVD+DR   S   +R  SSQR+D++TNGL   SEDIEDGEVIGIITL
Sbjct: 358 PLLSKQDEKSDSVVVDIDRVSRS---SRHPSSQRNDTSTNGLPQLSEDIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQSK 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL   KGA   GGQ K
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTANKGA---GGQIK 471

Query: 481 QGLPPKKAAESDSSSTR 497
            G   KK +E+DSS+TR
Sbjct: 472 SGQTLKK-SENDSSATR 487

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557879|ref|XP_003547237.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/498 (82%), Positives = 444/498 (89%), Gaps = 10/498 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           M +++A+M TR+LT      G P  EGIPFGSVWWFVYAGIS  LV+FAGIMSGLTLGLM
Sbjct: 1   MNVVSALMVTRLLTRNQL--GAP--EGIPFGSVWWFVYAGISFFLVIFAGIMSGLTLGLM 56

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSG+PSEKKQAA I PVVQKQHQLLVTLLLCNAA+MEALPIYLDK+FNQ
Sbjct: 57  SLGLVDLEILQRSGSPSEKKQAAVILPVVQKQHQLLVTLLLCNAAAMEALPIYLDKMFNQ 116

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVLFFGEVIPQAIC+RYGLAVGANFVWLVRILMIICYP+AYPIGK+LD +L
Sbjct: 117 YVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFVWLVRILMIICYPVAYPIGKVLDCLL 176

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLK LV+IHSQEAGKGGELTHDETTIISGALDLTEKTAE AMTPIESTFS
Sbjct: 177 GHNEALFRRAQLKVLVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEAAMTPIESTFS 236

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 237 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 296

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVV+A+GK KT+P  TD +  + N+  GGD  LTA
Sbjct: 297 IPRVPSDMPLYDILNEFQKGSSHMAAVVRARGKGKTIPETTDEETYEENKGVGGDSQLTA 356

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLL KQ+EK+ES +VD+D+   S S+N+ +  QRSDST NG    S++IEDGEVIGIITL
Sbjct: 357 PLLQKQNEKSESFIVDIDKFSRSPSINKSTGLQRSDSTRNGSF--SDNIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQSK 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPS RRL  QKGA   GGQSK
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSIRRLTAQKGA---GGQSK 471

Query: 481 QGLPPKKAAESDSSSTRA 498
            GL  KK+AE D S+TR+
Sbjct: 472 PGLTLKKSAE-DGSNTRS 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107237|ref|XP_002314418.1| predicted protein [Populus trichocarpa] gi|222863458|gb|EEF00589.1| predicted protein [Populus trichocarpa]

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/510 (81%), Positives = 443/510 (86%), Gaps = 11/510 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLM 60
           MQLLNAVMATRMLT     GG  + + IPFGS  WF YAGISC LVLFAGIMSGLTLGLM
Sbjct: 1   MQLLNAVMATRMLTEL---GGQSNGDEIPFGSFSWFAYAGISCFLVLFAGIMSGLTLGLM 57

Query: 61  SLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
           SLGLV+LEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ
Sbjct: 58  SLGLVDLEILQRSGTSTEKKQAAAILPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 117

Query: 121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
           YVAIILSVTFVL FGEVIPQ+ICTRYGLAVGANFVWLVRILMI+CYPI+YPIGK+LD VL
Sbjct: 118 YVAIILSVTFVLAFGEVIPQSICTRYGLAVGANFVWLVRILMILCYPISYPIGKVLDCVL 177

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GHNEALFRRAQLKALV+IH  EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS
Sbjct: 178 GHNEALFRRAQLKALVSIHGLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 237

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LDVNSKLDWEAMGK+LARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR
Sbjct: 238 LDVNSKLDWEAMGKVLARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 297

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
           IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK LPP  DGK+ + N+  G +  LT 
Sbjct: 298 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKALPPTIDGKEHEGNKVTGKESQLTT 357

Query: 361 PLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           PLLS  +EK +SVVVD+DR       +R  S QR+D++  G+   SEDIEDGEVIGIITL
Sbjct: 358 PLLSMPNEKLDSVVVDMDR---VSRPSRQPSLQRNDASIKGMTLLSEDIEDGEVIGIITL 414

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQSK 480
           EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL   KG+   G QSK
Sbjct: 415 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTANKGSG--GHQSK 472

Query: 481 QGLPPKKAAESDSSSTR--ATPSDPPLDSK 508
            G   KK +E+DSS+TR   T  +P L +K
Sbjct: 473 PGQTLKK-SENDSSATRLQGTAGEPFLGNK 501

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465210|ref|XP_004150321.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Cucumis sativus]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/492 (81%), Positives = 432/492 (87%), Gaps = 8/492 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG-IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGL 59
           M  +NAVM TRMLT   +N G  S  G IPFGS+ WF YAGISCV VLFAGIMSGLTLGL
Sbjct: 1   MHFINAVMLTRMLT---RNSGLQSDAGEIPFGSLLWFTYAGISCVFVLFAGIMSGLTLGL 57

Query: 60  MSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFN 119
           MSLGLV+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFN
Sbjct: 58  MSLGLVDLEILQRSGTAVEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFN 117

Query: 120 QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV 179
           QYVAIILSVTFVL FGEVIPQAICTRYGLAVGANFV LVRILM+ICYPIAYPIGKILD +
Sbjct: 118 QYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCL 177

Query: 180 LGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 239
           LGHNEALFRRAQLKALV+IHS EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF
Sbjct: 178 LGHNEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 237

Query: 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 299
           SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR
Sbjct: 238 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 297

Query: 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT 359
           RIPRVPSDMPLYDILNEFQKGSSHMAAVVK KGK+K LPP  DG++ + N+A G +  LT
Sbjct: 298 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEEFEDNKASGTESQLT 357

Query: 360 APLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSD-STTNGLIYASEDIEDGEVIGII 418
           APLL K DE ++SVV+D+DR   +  ++R  S +R+D S+ NG  ++SEDIEDGEVIGII
Sbjct: 358 APLLRKHDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIEDGEVIGII 417

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ 478
           TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASS+ARAPS RRL  QKG  +   Q
Sbjct: 418 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARAPSIRRLTAQKGGQH---Q 474

Query: 479 SKQGLPPKKAAE 490
           +KQ   PKK+ E
Sbjct: 475 TKQAQTPKKSTE 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528085|ref|XP_004171037.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Cucumis sativus]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/492 (81%), Positives = 432/492 (87%), Gaps = 8/492 (1%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG-IPFGSVWWFVYAGISCVLVLFAGIMSGLTLGL 59
           M  +NAVM TRMLT   +N G  S  G IPFGS+ WF YAGISCV VLFAGIMSGLTLGL
Sbjct: 1   MHFINAVMLTRMLT---RNSGLQSDAGEIPFGSLLWFTYAGISCVFVLFAGIMSGLTLGL 57

Query: 60  MSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFN 119
           MSLGLV+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDKLFN
Sbjct: 58  MSLGLVDLEILQRSGTAVEKKQAAAILPVVQKQHQLLVTLLLCNAVAMEALPIYLDKLFN 117

Query: 120 QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV 179
           QYVAIILSVTFVL FGEVIPQAICTRYGLAVGANFV LVRILM+ICYPIAYPIGKILD +
Sbjct: 118 QYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVCLVRILMVICYPIAYPIGKILDCL 177

Query: 180 LGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 239
           LGHNEALFRRAQLKALV+IHS EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF
Sbjct: 178 LGHNEALFRRAQLKALVSIHSLEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTF 237

Query: 240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 299
           SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR
Sbjct: 238 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR 297

Query: 300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT 359
           RIPRVPSDMPLYDILNEFQKGSSHMAAVVK KGK+K LPP  DG++ + N+A G +  LT
Sbjct: 298 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKVKGKNKALPPTLDGEEFEDNKASGTESQLT 357

Query: 360 APLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSD-STTNGLIYASEDIEDGEVIGII 418
           APLL K DE ++SVV+D+DR   +  ++R  S +R+D S+ NG  ++SEDIEDGEVIGII
Sbjct: 358 APLLRKHDENSDSVVLDIDRTSKTSVISRQPSYRRNDASSINGPSHSSEDIEDGEVIGII 417

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ 478
           TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASS+ARAPS RRL  QKG  +   Q
Sbjct: 418 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSMARAPSIRRLTAQKGGQH---Q 474

Query: 479 SKQGLPPKKAAE 490
           +KQ   PKK+ E
Sbjct: 475 TKQAQTPKKSTE 486

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521943|ref|XP_003529609.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/494 (80%), Positives = 437/494 (88%), Gaps = 10/494 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGP--SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           M+ ++A+M  RMLT   ++   P   +E IPFGSVWWF YAG+SC LVLFAGIMSGLTLG
Sbjct: 1   MRAVSALMVARMLT---RDHSLPVLGNESIPFGSVWWFAYAGVSCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLGLV+LEIL+RSG+P+EK QAA I PVV+KQHQLLVTLLLCNA +MEALP+YLDKLF
Sbjct: 58  LMSLGLVDLEILERSGSPAEKMQAAIILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAIILSVTFVLFFGEVIPQAIC+RYGLAVGANF WLVRILMIICYP++YP+GK+LD 
Sbjct: 118 NQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDH 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           +LGHNEALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 LLGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGK+LARGHSRVPVYSGNP+NIIGLLLVKSLLTVRPETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA+GK K  P + D +K + N++ GGD  L
Sbjct: 298 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKGKETPQIIDEEKNEENKSIGGDSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLL KQD K+ SVVVD+ +P    S+N+LS  QRSDSTTNG   +SE+IEDGEVIGII
Sbjct: 358 TTPLLQKQDAKSGSVVVDIVKPSKPSSINKLSVLQRSDSTTNG--PSSENIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ 478
           TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL  QKGA   G Q
Sbjct: 416 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTSQKGA---GIQ 472

Query: 479 SKQGLPPKKAAESD 492
           SK G  PKK+AE +
Sbjct: 473 SKPGQAPKKSAEEN 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564538|ref|XP_003550510.1| PREDICTED: DUF21 domain-containing protein At4g14240-like [Glycine max]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/494 (80%), Positives = 435/494 (88%), Gaps = 10/494 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGP--SSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           M+ ++A+M  RMLT   ++   P   SE IPF SVWWFVYAGISC LVLFAGIMSGLTLG
Sbjct: 1   MRAVSALMVARMLT---RDHSLPVLCSESIPFRSVWWFVYAGISCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLGLV+LEIL+RSG+P EK QAA I PVV+KQHQLLVTLLLCNA +MEALP+YLDKLF
Sbjct: 58  LMSLGLVDLEILERSGSPVEKMQAAVILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAIILSVTFVLFFGEVIPQAIC+RYGLAVGANF WLVRILMIICYP++YP+GK+LD 
Sbjct: 118 NQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDH 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           +LGHNEALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 LLGHNEALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGK+LARGHSRVPVYSGNP+NIIGLLLVKSLLTVRPETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA+GK K  P + D +K + NE+ GGD  L
Sbjct: 298 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKGKETPQIIDEEKNEENESIGGDSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLL KQD K+ SVVVD+ +P    S+N+LS  QRSD TTNG   +SE+IEDGEVIGII
Sbjct: 358 TTPLLQKQDAKSGSVVVDIAKPSKPSSINKLSGLQRSDGTTNG--PSSENIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ 478
           TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRL  QKGA   G Q
Sbjct: 416 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTNQKGA---GIQ 472

Query: 479 SKQGLPPKKAAESD 492
           SK G   KK+AE +
Sbjct: 473 SKPGQAQKKSAEEN 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432520|ref|XP_002280174.1| PREDICTED: DUF21 domain-containing protein At4g14240 [Vitis vinifera]

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/512 (78%), Positives = 436/512 (85%), Gaps = 12/512 (2%)

Query: 1   MQLLNAVMATRMLTSTMKNGGGPSSEG--IPFGSVWWFVYAGISCVLVLFAGIMSGLTLG 58
           MQL+NAV   RM     +N G  S  G  I FGS+W+F+Y GI C LVLFAGIMSGLTLG
Sbjct: 1   MQLINAVAIARM---AARNLGAESLGGGDIAFGSLWFFIYVGICCFLVLFAGIMSGLTLG 57

Query: 59  LMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLF 118
           LMSLG V+LEILQRSGT  EKKQAAAI PVVQKQHQLLVTLLLCNA SMEALP+YLDKLF
Sbjct: 58  LMSLGRVDLEILQRSGTSDEKKQAAAILPVVQKQHQLLVTLLLCNACSMEALPLYLDKLF 117

Query: 119 NQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDW 178
           NQ+VAI+LSVTFVL FGEVIPQAIC+RYGL+VGANFVWLVRILMIICYPIAYPIGKILDW
Sbjct: 118 NQFVAIVLSVTFVLAFGEVIPQAICSRYGLSVGANFVWLVRILMIICYPIAYPIGKILDW 177

Query: 179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 238
           VLGHNEALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST
Sbjct: 178 VLGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIEST 237

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
           FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVR ETETPVSAVSI
Sbjct: 238 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRAETETPVSAVSI 297

Query: 299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL 358
           RRIPRVP+DMPLYDILNEFQKGSSHMAAVVK KG++K  P + DGK  + N+  G D  L
Sbjct: 298 RRIPRVPADMPLYDILNEFQKGSSHMAAVVKPKGRNKNAPQVMDGKITEENKITGADSQL 357

Query: 359 TAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGII 418
           T PLLSKQDEK ES+VVD+++      +NR   SQ SD+ TNGL   SEDIEDGEVIGII
Sbjct: 358 TTPLLSKQDEKLESIVVDIEKASRPTIINR--QSQHSDAATNGLPRLSEDIEDGEVIGII 415

Query: 419 TLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ 478
           TLEDVFEELLQEEIVDETDE+VDVHKRIRVAAAAAASS+ARAPS RRL G KGA   GGQ
Sbjct: 416 TLEDVFEELLQEEIVDETDEFVDVHKRIRVAAAAAASSIARAPSIRRLTGHKGA---GGQ 472

Query: 479 SKQGLPPKKAAESDSSSTR--ATPSDPPLDSK 508
           +KQ   PKK+ E DS+S R    P +  L +K
Sbjct: 473 TKQVQSPKKSIEEDSNSARLHGNPGESLLGNK 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436964|ref|XP_002276672.1| PREDICTED: putative DUF21 domain-containing protein At1g03270 [Vitis vinifera]

 Score =  737 bits (1902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/496 (77%), Positives = 429/496 (86%), Gaps = 13/496 (2%)

Query: 1   MQLLNAVMATRMLTS---TMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAGIMSGLTL 57
           M LLNA+    M T+    ++      +E I FGS+WWFVYAG+SC LVLFAGIMSGLTL
Sbjct: 1   MSLLNALTLGSMPTTGEFVLR------TEDIEFGSLWWFVYAGVSCFLVLFAGIMSGLTL 54

Query: 58  GLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKL 117
           GLMSLGLVELEILQRSGT +EKKQAAAI PVVQKQHQLLVTLLLCNA +MEALPIYLDK+
Sbjct: 55  GLMSLGLVELEILQRSGTSAEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKI 114

Query: 118 FNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILD 177
           F+ +VAI+LSVTFVL FGE+IPQAICTRYGL+VGANFVWLVRILMIICYPIA+PIGK+LD
Sbjct: 115 FHPFVAILLSVTFVLAFGEIIPQAICTRYGLSVGANFVWLVRILMIICYPIAFPIGKVLD 174

Query: 178 WVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES 237
            VLGHN+ALFRRAQLKALV+IH QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES
Sbjct: 175 AVLGHNDALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIES 234

Query: 238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVS 297
           TFSLDVNSKLDWEA+GKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR ETETPVSAVS
Sbjct: 235 TFSLDVNSKLDWEAIGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRAETETPVSAVS 294

Query: 298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCD 357
           IR+IPRVP+DMPLYDILNEFQKGSSHMAAVVK KGK+K   P  DG++ + N+   G+  
Sbjct: 295 IRKIPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKNKNPLPKGDGERFEENKVANGNSQ 354

Query: 358 LTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGI 417
            T PLL+  ++K+E+VVVD+D+     + N+ + SQ++ +TTN L +  EDIEDGEVIGI
Sbjct: 355 YTTPLLANDNDKSENVVVDIDKVPKPTNTNKQTPSQQNGATTNSLPHLPEDIEDGEVIGI 414

Query: 418 ITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLIGQKGAANQGG 477
           ITLEDVFEELLQEEIVDETD YVDVHKRIRVAAAAAAS VARAPSSRRL GQK A   GG
Sbjct: 415 ITLEDVFEELLQEEIVDETDVYVDVHKRIRVAAAAAASFVARAPSSRRLTGQKPA---GG 471

Query: 478 QSKQGLPPKKAAESDS 493
           QS+QG  PKK+AE DS
Sbjct: 472 QSRQG-TPKKSAEDDS 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.962	0.989	0.662	7.3e-162
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.962	0.987	0.610	3.1e-147
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.692	0.705	0.719	2.1e-143
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.598	0.716	0.573	5.4e-96
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.624	0.749	0.545	3.4e-94
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.696	0.708	0.460	2.1e-92
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.625	0.603	0.501	7.1e-90
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.655	0.465	0.358	6.9e-63
SGD|S000005421	706	MAM3 "Protein required for nor	0.580	0.417	0.385	1.6e-59
POMBASE|SPCC4B3.03c	679	SPCC4B3.03c "mitochondrial mor	0.614	0.459	0.359	1.6e-57

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1576 (559.8 bits), Expect = 7.3e-162, P = 7.3e-162
 Identities = 333/503 (66%), Positives = 366/503 (72%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             M L+NAV A R+L+   ++ G    E IPFGS  W  YAGISC LVLFA           
Sbjct:     1 MHLINAVAAARILSGIGQSNGNNGGEAIPFGSFEWITYAGISCFLVLFAGIMSGLTLGLM 60

Query:    61 XXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
                     ILQRSGTP+EKKQAAAIFPVVQKQHQLLVTLLLCNA +ME LPIYLDKLFN+
Sbjct:    61 SLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNE 120

Query:   121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
             YVAIILSVTFVL FGEVIPQAICTRYGLAVGANFVWLVRILM +CYPIA+PIGKILD VL
Sbjct:   121 YVAIILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVL 180

Query:   181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
             GHN+ALFRRAQLKALV+IHSQEAGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct:   181 GHNDALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 240

Query:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
             LDVNSKLDWEAMGKILARGHSRVPVYSGNPKN+IGLLLVKSLLTVRPETET VSAV IRR
Sbjct:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLVKSLLTVRPETETLVSAVCIRR 300

Query:   301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
             IPRVP+DMPLYDILNEFQKGSSHMAAVVK KGKSK +PP T  ++   +  +  D DLTA
Sbjct:   301 IPRVPADMPLYDILNEFQKGSSHMAAVVKVKGKSK-VPPSTLLEE---HTDESNDSDLTA 356

Query:   361 PLLSKQDEKTESVVVDVDRPXXXXXXXXXXXXXXXXXXXXXLIYASXXXXXXXXXXXXTL 420
             PLL K++   ++V+V +D+                        + S            TL
Sbjct:   357 PLLLKREGNHDNVIVTIDKANGQSFFQNNESGPHGFS------HTSEAIEDGEVIGIITL 410

Query:   421 EDVFEELLQEEIVDETDEYVDVHKRIXXXXXXXXXXXXXXXXXXXLIGQKGAANQGGQSK 480
             EDVFEELLQEEIVDETDEYVDVHKRI                   L+ QKG    GGQ+K
Sbjct:   411 EDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSRKLLAQKGT---GGQNK 467

Query:   481 QGLPPKKAAESDSSSTRATPSDP 503
             QG    K    +      T ++P
Sbjct:   468 QG-QTNKVPGQEQDKMLGTITEP 489

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
 Identities = 309/506 (61%), Positives = 345/506 (68%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             M  +NAV+A RML   +       SE IPFGS+ W  YAGISC LVLFA           
Sbjct:     1 MHPINAVVAARMLAG-ISQSNALQSEAIPFGSLEWITYAGISCFLVLFAGIMSGLTLGLM 59

Query:    61 XXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQ 120
                     ILQRSGTP EKKQ+AAIFPVVQKQHQLLVTLLL NA +ME LPIYLDK+FN+
Sbjct:    60 SLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNE 119

Query:   121 YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL 180
             YVAIILSVTFVLF GEVIPQAICTRYGLAVGAN VWLVRILM++ YPI++PI K+LDWVL
Sbjct:   120 YVAIILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVL 179

Query:   181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
             GHN+ LFRRAQLKALV+IH + AGKGGELTHDETTIISGALDLTEKTA+EAMTPIESTFS
Sbjct:   180 GHNDPLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFS 239

Query:   241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
             LDVNSKLD EAM KI ARGHSRVPVYS NPKN+IGLLLVKSLLTVRPET T VSAV IRR
Sbjct:   240 LDVNSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLVKSLLTVRPETGTLVSAVGIRR 299

Query:   301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTA 360
             IPRVP++MPLYDILNEFQKGSSHMAAVVK KGKSK  P     +    +     + +LTA
Sbjct:   300 IPRVPANMPLYDILNEFQKGSSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTA 359

Query:   361 PLLSKQDEKTESVVVDVDRPXXXXXXXXXXXXXXXXXXXXXLIYASXXXXXXXXXXXXTL 420
             PLL K++   +SV+V +D+                        + S            TL
Sbjct:   360 PLLLKREGNHDSVIVRIDKANGQSFISEAGRQGFS--------HTSEEIEDGDVIGIITL 411

Query:   421 EDVFEELLQEEIVDETDEYVDVHKRIXXXXXXXXXXXXXXXXXXX--LIGQKGAANQGGQ 478
             EDVFEELLQEEIVDETDEY+DVHKRI                     L+G KG+   GG 
Sbjct:   412 EDVFEELLQEEIVDETDEYIDVHKRIRVATVAAVAISSLARAPSGRRLLGPKGS---GGP 468

Query:   479 SKQGLPPKKAAESDSSSTRATPSDPP 504
                  P   +          T + PP
Sbjct:   469 KT---PKASSTPKPDDKLMGTMTGPP 491

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1293 (460.2 bits), Expect = 2.1e-143, Sum P(2) = 2.1e-143
 Identities = 257/357 (71%), Positives = 296/357 (82%)

Query:    25 SEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAA 84
             +E I FGS WWFV  G++C LVLFA                   ILQ+SG+ +EKKQAAA
Sbjct:    23 AEDIRFGSPWWFVVVGVACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAA 82

Query:    85 IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
             I PVV+KQHQLLVTLLLCNAA+MEALPI LDK+F+ +VA++LSVTFVL FGE+IPQAIC+
Sbjct:    83 ILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICS 142

Query:   145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAG 204
             RYGLAVGANF+WLVRILMIICYPIAYPIGK+LD V+GHN+ LFRRAQLKALV+IHSQEAG
Sbjct:   143 RYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHNDTLFRRAQLKALVSIHSQEAG 202

Query:   205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
             KGGELTH+ET IISGALDL++KTAEEAMTPIESTFSLDVN+KLDWE +GKIL+RGHSR+P
Sbjct:   203 KGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIP 262

Query:   265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
             VY GNPKNIIGLLLVKSLLTVR ETE PVS+VSIR+IPRVPSDMPLYDILNEFQKGSSHM
Sbjct:   263 VYLGNPKNIIGLLLVKSLLTVRAETEAPVSSVSIRKIPRVPSDMPLYDILNEFQKGSSHM 322

Query:   325 AAVVKAKGKSK--TLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDR 379
             AAVVK K K K   +  +++G+ PK N       +LTAPLL  +   +  VVVD+D+
Sbjct:   323 AAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTAPLLKHE---SHDVVVDIDK 376

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 891 (318.7 bits), Expect = 5.4e-96, Sum P(2) = 5.4e-96
 Identities = 175/305 (57%), Positives = 219/305 (71%)

Query:    35 WFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQ 94
             +F++  +   LVLFA                   +L +SGTP  +K AA I PVV+ QH 
Sbjct:    12 FFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAAKILPVVKNQHL 71

Query:    95 LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
             LLVTLL+CNAA+ME LPI+LD L   + AI++SVT +L FGE+IPQ+IC+RYGLA+GA  
Sbjct:    72 LLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSICSRYGLAIGATV 131

Query:   155 VWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDE 213
                VR+L+ IC P+A+PI K+LD++LGH  A LFRRA+LK LV  H  EAGKGGELTHDE
Sbjct:   132 APFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNEAGKGGELTHDE 191

Query:   214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
             TTII+GAL+L+EK  ++AMTPI   F +D+N+KLD + M  IL +GHSRVPVY   P NI
Sbjct:   192 TTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSRVPVYYEQPTNI 251

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IGL+LVK+LLT+ P+ E PV  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct:   252 IGLVLVKNLLTINPDEEIPVKNVTIRRIPRVPEILPLYDILNEFQKGLSHMAVVVRQCDK 311

Query:   334 SKTLP 338
                LP
Sbjct:   312 IHPLP 316

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
 Identities = 174/319 (54%), Positives = 225/319 (70%)

Query:    35 WFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQKQHQ 94
             +F++  +  +LVLFA                   +L +SGTP ++  AA I PVV+ QH 
Sbjct:    12 FFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAAKILPVVKNQHL 71

Query:    95 LLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANF 154
             LL TLL+CNAA+MEALPI+LD L   + AI++SVT +L FGE+IPQ++C+R+GLA+GA  
Sbjct:    72 LLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVCSRHGLAIGATV 131

Query:   155 VWLVRILMIICYPIAYPIGKILDWVLGHNE-ALFRRAQLKALVTIHSQEAGKGGELTHDE 213
                VR+L+ IC P+A+PI K+LD++LGH   ALFRRA+LK LV +H  EAGKGGELTHDE
Sbjct:   132 APFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNEAGKGGELTHDE 191

Query:   214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNI 273
             TTII+GAL+L+EK A++AMTPI  TF +D+N+KLD + M  IL +GHSRVPVY     NI
Sbjct:   192 TTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSRVPVYYEQRTNI 251

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IGL+LVK+LLT+ P+ E  V  V+IRRIPRVP  +PLYDILNEFQKG SHMA VV+   K
Sbjct:   252 IGLVLVKNLLTINPDEEIQVKNVTIRRIPRVPETLPLYDILNEFQKGHSHMAVVVRQCDK 311

Query:   334 SKTLPPMTDGKKPKLNEAK 352
                L    D     +NE +
Sbjct:   312 IHPLQS-NDAANETVNEVR 329

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 822 (294.4 bits), Expect = 2.1e-92, Sum P(2) = 2.1e-92
 Identities = 164/356 (46%), Positives = 238/356 (66%)

Query:    24 SSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAA 83
             ++  +P     ++VY  +   LV+FA                   ++ ++G P ++K A 
Sbjct:     2 AANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAE 61

Query:    84 AIFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAIC 143
              I P+V+ QH LL TLL+ NA +MEALPI++D L   + AI++SVT +L FGE+IPQA+C
Sbjct:    62 KILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVC 121

Query:   144 TRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHSQE 202
             +RYGL++GA   +LVR+++I+ +P++YPI K+LD +LG  +  L  RA+LK+LV +H  E
Sbjct:   122 SRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNE 181

Query:   203 AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR 262
             AGKGGELTHDETTIISGALD+++K+A++AMTP+   FSLD+N KLD + MG I + GHSR
Sbjct:   182 AGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSR 241

Query:   263 VPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSS 322
             +P+YS NP  IIG +LVK+L+ VRPE ET +  + IRR+P+V  ++PLYDILN FQ G S
Sbjct:   242 IPIYSVNPNVIIGFILVKNLIKVRPEDETSIRDLPIRRMPKVDLNLPLYDILNIFQTGRS 301

Query:   323 HMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD 378
             HMAAVV  K  + T  P+ + K    +  K  +  L+ P L+  +   +S +  +D
Sbjct:   302 HMAAVVGTKNHTNTNTPVHE-KSINGSPNKDANVFLSIPALNSSETSHQSPIRYID 356

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
 Identities = 160/319 (50%), Positives = 215/319 (67%)

Query:    25 SEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAA 84
             S  IP     + +Y  I   LV FA                   +L +SG P ++  A  
Sbjct:     2 SSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAGK 61

Query:    85 IFPVVQKQHQLLVTLLLCNAASMEALPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICT 144
             IFPVV+ QH LL TLL+ N+ +MEALPI+LDK+   ++AI+LSVT +L FGE++PQA+CT
Sbjct:    62 IFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVCT 121

Query:   145 RYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEA 203
             RYGL VGA     VR+L+++ +PI+YPI K+LDW+LG     L RRA+LK  V  H  EA
Sbjct:   122 RYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNEA 181

Query:   204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV 263
             GKGG+LT DET+II+GAL+LTEKTA++AMTPI + FSL++++ L+ E +  I++ GHSRV
Sbjct:   182 GKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSRV 241

Query:   264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
             PVY  NP +IIGL+LVK+LL V    E P+  +S+R+IPRV   MPLYDILNEFQKG SH
Sbjct:   242 PVYFRNPTHIIGLILVKNLLAVDARKEVPLRKMSMRKIPRVSETMPLYDILNEFQKGHSH 301

Query:   324 MAAVVKAKGKSKTLPPMTD 342
             +A V K   + +  P  ++
Sbjct:   302 IAVVYKDLDEQEQSPETSE 320

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 556 (200.8 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
 Identities = 122/340 (35%), Positives = 195/340 (57%)

Query:     1 MQLLNAVMATRMLTSTMKNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXX 60
             + L++A   ++ L    ++     +  +P      ++Y G++  LVL             
Sbjct:    29 ISLVSAAPTSQFLAP--RHDAHAETHALPANDATLWLYLGVAAALVLTGGAFAGLTIALM 86

Query:    61 XXXXXXXXILQRSG-TPSEKKQAAAIFPVVQK-QHQLLVTLLLCNAASMEALPIYLDK-L 117
                     ++Q SG +PSE+K AA++  ++++ +H +LVTLLL N  + E LPI LD+ L
Sbjct:    87 GQDEVYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSL 146

Query:   118 FNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILD 177
                + A++ S   ++ FGE++PQ+IC RYGL +GA     V  LM +  P+A+P+ K+LD
Sbjct:   147 GGGWPAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLD 206

Query:   178 WVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIE 236
              +LG +   ++++A LK LVT+H      G +L  DE TIIS  LDL EK+    MTP+E
Sbjct:   207 RLLGEDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPME 266

Query:   237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPETETPVSA 295
               F++  ++ LD   M  IL++G+SR+P++S  NP+N IG+LLVK L+T  PE   PVS 
Sbjct:   267 DVFTMSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLVKMLITYDPEDCKPVSH 326

Query:   296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSK 335
              ++  +P    +    DI+N FQ+G SHM  V +  G+ +
Sbjct:   327 FALATLPETRPETSCLDIVNFFQEGKSHMVLVSEFPGEDR 366

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

SGD|S000005421 MAM3 "Protein required for normal mitochondrial morphology" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 529 (191.3 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
 Identities = 116/301 (38%), Positives = 173/301 (57%)

Query:    38 YAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPSEKKQAAAIFPVVQK-QHQLL 96
             Y  IS +LVL                     ++  SG+ SEKK A  +  ++ + +H +L
Sbjct:    64 YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query:    97 VTLLLCNAASMEALPIYLDK-LFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFV 155
             VTLLL N  + E LPI LD+ L   + A++ S   ++ FGE+IPQ++C +YGL VGA F 
Sbjct:   124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query:   156 WLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKALVTIHSQEAGKGGELTHDET 214
               V +LM + YP+AYPI  +LD++LG +   +++++ LK LVT+H     +   LT DE 
Sbjct:   184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query:   215 TIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNI 273
             TIIS  LDL  K  EE MTPIE+ F++  ++ LD + + KI   G SR+P++  N P N 
Sbjct:   242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query:   274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
             IG+LLV+ L++  P+   P+S   +  +P    +    +ILN FQ+G +HM  V K  G 
Sbjct:   302 IGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGS 361

Query:   334 S 334
             S
Sbjct:   362 S 362

GO:0005773 "vacuole" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0030026 "cellular manganese ion homeostasis" evidence=IMP

GO:0016020 "membrane" evidence=IEA

POMBASE|SPCC4B3.03c SPCC4B3.03c "mitochondrial morphology protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 502 (181.8 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 115/320 (35%), Positives = 183/320 (57%)

Query:    18 KNGGGPSSEGIPFGSVWWFVYAGISCVLVLFAXXXXXXXXXXXXXXXXXXXILQRSGTPS 77
             ++GG  S+E       W  +   IS VL+L                     +L++SG  S
Sbjct:    47 QDGGFVSAEKDSDFEYWMKLI--ISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDAS 104

Query:    78 EKKQAAAIFPVVQK-QHQLLVTLLLCNAASMEALPIYLDKLFNQ-YVAIILSVTFVLFFG 135
             E+  A  +  ++++ +H +LVTLLL N    E LPI  D +    + A+++S   ++ FG
Sbjct:   105 ERVHARKVLKLLRRGKHWVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFG 164

Query:   136 EVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEA-LFRRAQLKA 194
             EVIPQA C RYGL++GA    +V  +M + +PIAYP   ILD  LG +++ +++++ LK 
Sbjct:   165 EVIPQATCVRYGLSIGAKLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKT 224

Query:   195 LVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGK 254
             LVT+H ++ G   +L  DE TII+  LDL EK AE  MTPIE  F+L ++  LD + +G+
Sbjct:   225 LVTLH-RDLGID-KLNQDEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGE 282

Query:   255 ILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI 313
             I+  G+SR+PV+  G P + IG+LL K+L+   P+ + PV   ++  +P+   +    D+
Sbjct:   283 IICAGYSRIPVHKPGFPHDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDL 342

Query:   314 LNEFQKGSSHMAAVVKAKGK 333
             LN  Q+G SHM  +  + G+
Sbjct:   343 LNYCQEGKSHMILISNSPGE 362

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q67XQ0	Y4424_ARATH	No assigned EC number	0.7842	0.9232	0.9493	yes	no
Q4V3C7	Y4423_ARATH	No assigned EC number	0.7389	0.9133	0.9373	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VIII.297.1	hypothetical protein (496 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00012610	hypothetical protein (232 aa)			•						0.442

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	508
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	4e-42
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	7e-32
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	4e-24
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	1e-22
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	4e-19
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	2e-11
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	6e-09
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	2e-05
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	1e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-04

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  155 bits (393), Expect = 4e-42
 Identities = 81/302 (26%), Positives = 131/302 (43%), Gaps = 22/302 (7%)

Query: 44  VLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCN 103
           +L+  +   S     L+SL    LE L   G     K+A A   ++++ ++ L T+ L  
Sbjct: 12  LLIALSAFFSAAEFALVSLRRSRLEQLAEEG----NKRAKAALKLIERLNRYLSTVQLGI 67

Query: 104 -----AASMEALPIYLDKLFNQYVAIILSVTFVLF--------FGEVIPQAICTRYGLAV 150
                       P     L     A+ LS              FGE++P++I  R    V
Sbjct: 68  TLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKV 127

Query: 151 GANFVWLVRILMIICYPIAYPIGKILDWVLG-HNEALFRRAQLKALVTIHS--QEAGKGG 207
                  +R    + YP+ + + +I + +L            L +         E+ + G
Sbjct: 128 ALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELELVSESAEEG 187

Query: 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267
            L  +E  +I+  LDL ++T  E MTP     +LD+   ++ E +  IL  GHSR+PVY 
Sbjct: 188 VLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESGHSRIPVYD 246

Query: 268 GNPKNIIGLLLVKSLLTVRPETE-TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAA 326
           G+  NIIG++ VK LL    + +      V +R    VP  + L D+L EF++  +HMA 
Sbjct: 247 GDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAI 306

Query: 327 VV 328
           VV
Sbjct: 307 VV 308

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  120 bits (303), Expect = 7e-32
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 21/189 (11%)

Query: 38  YAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLV 97
              I  +L+L +   S     L+SL    LE L   G     K A  +  ++    +LL 
Sbjct: 2   LLLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEG----NKGARRLLKLLANPDRLLA 57

Query: 98  TLLLCNAASMEALPIYLDKLFNQY--------VAIILSVTFVLFFGEVIPQAICTRYGLA 149
           TLLL N  +   L         +         +A ++S   +L FGE++P+ +  R    
Sbjct: 58  TLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPER 117

Query: 150 VGANFVWLVRILMIICYPIAYPIGKILDWVLG-----HNEALFRRAQLKALVTIHSQEAG 204
           +       +R+LM + YP+ + + K+ + +L               +L+ALV    +E  
Sbjct: 118 IALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALVDEGEEE-- 175

Query: 205 KGGELTHDE 213
             G +  +E
Sbjct: 176 --GVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score =  103 bits (260), Expect = 4e-24
 Identities = 78/316 (24%), Positives = 140/316 (44%), Gaps = 30/316 (9%)

Query: 44  VLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLL--- 100
           +L+L + ++SG  +   SL   +L   +   +  E+     +  ++ +  +LL T+L   
Sbjct: 3   LLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQI----VINLLDRPKKLLATILIAN 58

Query: 101 -LCNAASMEALPIYLDKLFN----QYVAIILS---VTF-VLFFGEVIPQAICTRYGLAVG 151
              N A +       D LF     + +  ++    VTF +L FGE++P+    R  L   
Sbjct: 59  NFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFA 118

Query: 152 ANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALFRRAQLKALVTIHSQEAGKGGE 208
               + + IL  +  PI+ P+  I +++    G  ++     QL   + +  +E      
Sbjct: 119 KFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLSQALELTDEED----- 173

Query: 209 LTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG 268
            T +E  I+ G +       ++ M P    F+LD+ +    E + KI+  G+SR+PVY  
Sbjct: 174 TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYKE 232

Query: 269 NPKNIIGLLLVKSLLTVRP--ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAA 326
              NI G+L +K LL   P    +       +R    VP +  L D+L +FQ+  +H+A 
Sbjct: 233 TIDNITGVLYIKDLL---PHLNKKNFDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAI 289

Query: 327 VVKAKGKSKTLPPMTD 342
           VV   G +  L  + D
Sbjct: 290 VVDEYGGTSGLVTLED 305

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score = 99.7 bits (249), Expect = 1e-22
 Identities = 105/412 (25%), Positives = 174/412 (42%), Gaps = 50/412 (12%)

Query: 35  WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQ 94
           W +   I  ++++ A   SG    L +L    L  L + G     + A  +  +++K  +
Sbjct: 3   WILIIAIIILIIISA-FFSGSETALTALNRYRLRHLAKQG----NRGAKRVEKLLEKPDR 57

Query: 95  LLVTLLLCN-----AASMEALPIYLDKLFNQYVAI-ILSVTFV-LFFGEVIPQAICTRYG 147
           L+ T+L+ N      AS  A  + +    +  VAI    +TFV L F EV+P+ I   Y 
Sbjct: 58  LIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYP 117

Query: 148 LAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQE----- 202
             V     +++ IL+ +  P+ + +  I   +L     L      +A+  + S+E     
Sbjct: 118 ERVALPSSFILAILVRLFGPLVWLLNAITRRLL----RLLGINLDQAVSQLSSKEELRTA 173

Query: 203 ---AGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEA-MGKILAR 258
              +G  G +   +  ++ G LDL   T  + M P      +D++    WE  + ++L  
Sbjct: 174 VNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDID--DPWEEIVRQLLHS 231

Query: 259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDIL 314
            H+R+P+Y  +  NIIG+L V+ LL +  E     +   I R       VP   PL D L
Sbjct: 232 PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF-TKEDILRAADEPYFVPEGTPLSDQL 290

Query: 315 NEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE--- 371
             FQ+   H+A VV   G  + L  + D     L E  G   D T    +   E      
Sbjct: 291 VAFQRNKKHIALVVDEYGDIQGLVTLED----ILEEIVG---DFTDEHDTLAKEVIPQSD 343

Query: 372 -SVVVDVDRPLSSGSMNRLSSSQRSD---STTNGLI-YASEDI-EDGEVIGI 417
            S ++D    +    +NR       D    T NGL+    E+I E+G+ + I
Sbjct: 344 GSFIIDGSANVR--DLNRALDWNLPDEDARTINGLVLEELEEIPEEGQAVRI 393

Length = 423

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 82.5 bits (205), Expect = 4e-19
 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI 298
            +LD +  L+ E +  I   GHSR PVY G+  NIIG++ VK LL    E E  +    +
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL 62

Query: 299 RR-IPRVPSDMPLYDILNEFQKGSSHMAAVV 328
            R    VP   PL D+L E +K  SHMA VV
Sbjct: 63  LRPPLFVPESTPLDDLLEEMRKERSHMAIVV 93

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 201 QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH 260
           +++ +   +  D   ++ G +D+ +    + M P     +L  N  LD E +  I+   H
Sbjct: 42  RDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAH 100

Query: 261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDILNE 316
           SR PV S +  ++ G+LL K LL   P   +      I+ + R    VP    +  +L E
Sbjct: 101 SRFPVISEDKDHVEGILLAKDLL---PFMRSDAEPFDIKELLRPAVVVPESKRVDRLLKE 157

Query: 317 FQKGSSHMAAVV 328
           F+   +HMA V+
Sbjct: 158 FRSQRNHMAIVI 169

Length = 293

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)

Query: 212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK 271
           D   ++ G +D+ ++   + M P     +L  N  LD E +  I+   HSR PV S +  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 272 NIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAV 327
           +I G+L+ K LL   P   +   A S+ ++ R    VP    +  +L EF+    HMA V
Sbjct: 112 HIEGILMAKDLL---PFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIV 168

Query: 328 V 328
           +
Sbjct: 169 I 169

Length = 292

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 47/325 (14%)

Query: 45  LVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCN- 103
           +V+ +   SG   G+M+L    L  + + G  S K+    +  +++K  +L+  +L+ N 
Sbjct: 1   MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKR----VEKLLRKPDRLISLVLIGNN 56

Query: 104 ----AASMEALPIYLDKLFNQYVAIILSV-TFV-LFFGEVIPQAICTRYGLAVGANFVWL 157
                AS     + +    +  VAI   V TFV L F EV+P+ I   Y   V     +L
Sbjct: 57  LVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFL 116

Query: 158 VRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDE-TTI 216
           +  L I+  P+         W+L     L  R     L+ I + +    G L+ +E  TI
Sbjct: 117 LAPLQILMMPLV--------WLLNTITRLLMR-----LMGIKT-DIVVSGALSKEELRTI 162

Query: 217 IS---------------GALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-H 260
           +                  LDL + T ++ M P      +D+N   DW+++ + L    H
Sbjct: 163 VHESRSQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDIND--DWKSILRQLTHSPH 220

Query: 261 SRVPVYSGNPKNIIGLLLVKS---LLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEF 317
            R+ +Y  +  + I +L V+    L+T + E        +   I  VP   PL   L +F
Sbjct: 221 GRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEIYFVPEGTPLSTQLVKF 280

Query: 318 QKGSSHMAAVVKAKGKSKTLPPMTD 342
           Q+    +  VV   G  + L  + D
Sbjct: 281 QRNKKKVGLVVDEYGDIQGLVTVED 305

Length = 413

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 410 EDGEVIGIITLEDVFEELLQEEIVDETDE 438
           E G V G++TLED+ EE++  EI DE DE
Sbjct: 310 EYGGVEGLVTLEDIIEEIVG-EIPDEHDE 337

Length = 429

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 250 EAMGKILARGHSRVPVYSGNPKNIIGLL----LVKSLLTVRPETETPVSAVSIRRIPRVP 305
           EA+  +L  G S +PV   +   ++G++    L+++L     +    V  V  R +  V 
Sbjct: 14  EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVS 72

Query: 306 SDMPLYDILNEFQKGSSHMAAVVKAKGK 333
            D  L +      +       VV  +G+
Sbjct: 73  PDTSLEEAAELMLEHGIRRLPVVDDEGR 100

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	508
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
PRK11573	413	hypothetical protein; Provisional	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	100.0
KOG2118	498	consensus Predicted membrane protein, contains two	99.97
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.94
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.68
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.67
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.66
COG2524	294	Predicted transcriptional regulator, contains C-te	99.63
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.48
COG4109	432	Predicted transcriptional regulator containing CBS	99.48
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.37
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.35
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.35
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.35
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.33
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.33
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.32
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.31
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.31
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.31
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.31
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.3
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.3
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.3
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.29
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.29
COG3620	187	Predicted transcriptional regulator with C-termina	99.29
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.28
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.28
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.27
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.27
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.27
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.26
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.26
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.25
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.24
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.24
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.24
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.24
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.24
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.23
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.23
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.23
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.23
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.22
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.22
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.22
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.22
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.22
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.21
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.21
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.2
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.2
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.2
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.2
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.2
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.19
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.19
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.19
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.19
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.18
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.18
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.17
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.17
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.17
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.17
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.16
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.16
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.16
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.16
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.16
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.15
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.15
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.14
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.14
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.13
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.12
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.11
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.1
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.1
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.1
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.09
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.08
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.06
COG0517	117	FOG: CBS domain [General function prediction only]	99.06
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.04
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.03
COG2905	610	Predicted signal-transduction protein containing c	98.98
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.93
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.85
PRK11573	413	hypothetical protein; Provisional	98.84
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.76
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.71
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.63
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.6
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.54
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.48
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.45
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.45
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.25
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.11
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.1
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.08
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.93
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.84
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.79
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.69
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.57
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.51
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.46
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.44
COG2524	294	Predicted transcriptional regulator, contains C-te	97.44
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.4
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.33
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.32
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.26
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.16
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.14
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.14
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.12
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.11
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.08
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.06
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.06
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.03
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.03
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.03
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.02
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.02
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.01
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.01
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.0
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	96.99
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	96.96
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	96.95
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.93
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	96.9
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.9
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	96.9
COG0517	117	FOG: CBS domain [General function prediction only]	96.89
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	96.89
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.88
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	96.88
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	96.87
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	96.87
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	96.84
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	96.84
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	96.84
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	96.83
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.83
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	96.82
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	96.79
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.78
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	96.78
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	96.77
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	96.77
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.75
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	96.74
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	96.73
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	96.73
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	96.72
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	96.72
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	96.71
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.7
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.69
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	96.69
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.67
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	96.66
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	96.63
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.62
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.57
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.54
COG3620	187	Predicted transcriptional regulator with C-termina	96.5
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	96.48
PRK01862	574	putative voltage-gated ClC-type chloride channel C	96.47
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	96.44
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.43
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.43
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.39
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.35
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	96.34
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.32
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	96.31
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.28
COG2905	610	Predicted signal-transduction protein containing c	96.18
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.15
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.15
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	95.98
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	95.97
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	95.93
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	95.56
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	95.54
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	95.54
COG4109	432	Predicted transcriptional regulator containing CBS	94.36
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	94.14
PF03471	81	CorC_HlyC: Transporter associated domain; InterPro	93.14
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	90.61
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	90.15
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	86.1

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-67  Score=521.48  Aligned_cols=351  Identities=25%  Similarity=0.413  Sum_probs=310.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 010540           35 WFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL  114 (508)
Q Consensus        35 ~~~~~~ii~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~  114 (508)
                      |. +++.+++|+.+||||||+|+|++++||.|++.++++|++    +|+++.+|+++|++++.|+|+|||++|++.+.+.
T Consensus         3 ~~-l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~----~Akrv~kLL~k~drlig~iLIGNNLvNilasala   77 (423)
T COG4536           3 WI-LIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNR----GAKRVEKLLEKPDRLIGTILIGNNLVNILASALA   77 (423)
T ss_pred             ch-HHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccch----hhHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence            44 346677789999999999999999999999999999994    6889999999999999999999999998765543


Q ss_pred             ----HHHHHH---HHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh---hCCC-
Q 010540          115 ----DKLFNQ---YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHN-  183 (508)
Q Consensus       115 ----~~~~~~---~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l---~g~~-  183 (508)
                          -.++|.   .+|..++|+++++|+|++||++|+.||++++..+++++.++.++|+|++|.++++.+.+   +|.+ 
T Consensus        78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~  157 (423)
T COG4536          78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL  157 (423)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence                344543   47788899999999999999999999999999999999999999999999999887764   5654 


Q ss_pred             ----cccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540          184 ----EALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (508)
Q Consensus       184 ----~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~  259 (508)
                          +...+.||+|.+++    ++++.|...+++++|+.+++++++++|.|||+||.++..++.|++.+ +.++++....
T Consensus       158 ~~~~~~~~s~EElR~~v~----~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~  232 (423)
T COG4536         158 DQAVSQLSSKEELRTAVN----ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP  232 (423)
T ss_pred             ccccccccCHHHHHHHHH----HhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence                25678999999998    44556777788999999999999999999999999999999999988 9999999999


Q ss_pred             CcEEEEeeCCCCcEEEEeEHhHHhccCCCCc-ccccccc--cccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-TPVSAVS--IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (508)
Q Consensus       260 ~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~-~~V~dim--~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G  336 (508)
                      |+|+|+|+++.|+++|++|.||++++..+.+ ..-.+++  .+++.|||+.+++.+.|..|++++.|++.|||       
T Consensus       233 HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-------  305 (423)
T COG4536         233 HTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-------  305 (423)
T ss_pred             CCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe-------
Confidence            9999999999999999999999999876654 2233433  37899999999999999999999999999999       


Q ss_pred             cCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEE
Q 010540          337 LPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG  416 (508)
Q Consensus       337 iv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvG  416 (508)
                                                                                               |||++.|
T Consensus       306 -------------------------------------------------------------------------EYG~i~G  312 (423)
T COG4536         306 -------------------------------------------------------------------------EYGDIQG  312 (423)
T ss_pred             -------------------------------------------------------------------------ccCcEEe
Confidence                                                                                     8999999


Q ss_pred             eechHHHHHHHhCCccCCCCccccccce-----eEEeccccChHHHhhcCCCCCCccccCccccCCc
Q 010540          417 IITLEDVFEELLQEEIVDETDEYVDVHK-----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ  478 (508)
Q Consensus       417 IVTleDIleeivg~eI~dE~d~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  478 (508)
                      +||+|||+||||| ||.||||...+...     ++.+||+++++|+||+|+|+.++++..|+  .|+
T Consensus       313 LVTLEDIlEEIVG-dftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~Lp~e~a~Ti--nGL  376 (423)
T COG4536         313 LVTLEDILEEIVG-DFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDWNLPDEDARTI--NGL  376 (423)
T ss_pred             eeeHHHHHHHHhc-cccccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCCCCCCCcchhH--HHH
Confidence            9999999999999 99999997665544     79999999999999999999998877665  666

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=1.7e-64  Score=530.54  Aligned_cols=353  Identities=25%  Similarity=0.435  Sum_probs=302.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 010540           43 CVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL----DKLF  118 (508)
Q Consensus        43 ~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~----~~~~  118 (508)
                      ++|+++||||||+|+|++|+++.|+++++++|++    +|+++++++++|+++++|+++||+++|.+.+.+.    ..+|
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~----~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSK----KEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCH----HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999999873    6788999999999999999999999988765443    2334


Q ss_pred             HH--------HHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh---hCCCcccc
Q 010540          119 NQ--------YVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNEALF  187 (508)
Q Consensus       119 ~~--------~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l---~g~~~~~~  187 (508)
                      +.        .++++++|+++++|||++||++|.+||++++.+++|++++++++++|++|+++++++++   +|.+...+
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~~~~  157 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNI  157 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            31        13455667889999999999999999999999999999999999999999999987765   46555568


Q ss_pred             cHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEee
Q 010540          188 RRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS  267 (508)
Q Consensus       188 s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~  267 (508)
                      |+|||+.+++.+    .++| ++++|+++++++++|++++|+|+|+||+++++++.+++++ ++++.+.+++|||+|||+
T Consensus       158 t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~~  231 (408)
T TIGR03520       158 SVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVYK  231 (408)
T ss_pred             CHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEEc
Confidence            999999999843    3445 5899999999999999999999999999999999999998 999999999999999999


Q ss_pred             CCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccc
Q 010540          268 GNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (508)
Q Consensus       268 ~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~  347 (508)
                      ++.|+++|+++.||++....++..++.++ ++++.+||+++++.++++.|++++.|+++|+|                  
T Consensus       232 ~~~d~ivGiv~~kDll~~~~~~~~~l~~~-~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD------------------  292 (408)
T TIGR03520       232 ETIDNITGVLYIKDLLPHLNKKNFDWQSL-LREPYFVPENKKLDDLLRDFQEKKNHLAIVVD------------------  292 (408)
T ss_pred             CCCCceEEEEEHHHHHhHhccCCCCHHHH-cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEc------------------
Confidence            88899999999999986544333456776 47889999999999999999999999999999                  


Q ss_pred             cccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHH
Q 010540          348 LNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEEL  427 (508)
Q Consensus       348 ~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleei  427 (508)
                                                                                    |||+++||||+|||+|++
T Consensus       293 --------------------------------------------------------------E~G~~~GiVT~eDileei  310 (408)
T TIGR03520       293 --------------------------------------------------------------EYGGTSGLVTLEDIIEEI  310 (408)
T ss_pred             --------------------------------------------------------------CCCCEEEEEEHHHHHHHH
Confidence                                                                          799999999999999999


Q ss_pred             hCCccCCCCccccccce-----eEEeccccChHHHhhcCCCCCC---ccccCccccCCc--ccCCCCCCC
Q 010540          428 LQEEIVDETDEYVDVHK-----RIRVAAAAAASSVARAPSSRRL---IGQKGAANQGGQ--SKQGLPPKK  487 (508)
Q Consensus       428 vg~eI~dE~d~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~--~~~~~~~~~  487 (508)
                      +| ||.||+|...+..+     +|.++|.++++|+++.+|++..   +++.+..|+|||  ..-|+.++.
T Consensus       311 vg-ei~de~d~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~Tl~G~i~~~l~~iP~~  379 (408)
T TIGR03520       311 VG-DISDEFDDEDLIYSKIDDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKK  379 (408)
T ss_pred             hC-CCCCcCCcCccceEEeCCCeEEEEeccCHHHHHHHhCCCccccCCcCCCCccHHHHHHHHhCcCCCC
Confidence            99 99999985433332     5999999999999999999842   222345566999  444554443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=4.1e-64  Score=527.59  Aligned_cols=346  Identities=21%  Similarity=0.345  Sum_probs=296.1

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHH--
Q 010540           46 VLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYL----DKLFN--  119 (508)
Q Consensus        46 llls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~----~~~~~--  119 (508)
                      +++||||||+|+|++|+++.++++++++|++    +|+++++++++|+++++|+++||++++.+.+.+.    ..+++  
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~----~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNR----SAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCCh----hHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4689999999999999999999999999974    6788999999999999999999999987665433    23333  


Q ss_pred             -HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh---hCCCc-----ccccHH
Q 010540          120 -QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWV---LGHNE-----ALFRRA  190 (508)
Q Consensus       120 -~~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l---~g~~~-----~~~s~e  190 (508)
                       .+++++++|+++++|||++||++|.+||++++++++++++++.++++|++|+++++++.+   +|.++     ..+|++
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence             235666788899999999999999999999999999999999999999999998887754   55432     368999


Q ss_pred             HHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCC
Q 010540          191 QLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP  270 (508)
Q Consensus       191 EL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~  270 (508)
                      ||+.+++.+    .  +.++++|++|++++++|++++|+|||+||+++++++.+++++ ++++.+.+++|||+|||+++.
T Consensus       158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            999999742    2  258999999999999999999999999999999999999998 999999999999999999989


Q ss_pred             CcEEEEeEHhHHhccCCCC-c---ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcc
Q 010540          271 KNIIGLLLVKSLLTVRPET-E---TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (508)
Q Consensus       271 d~ivGiv~~kDll~~~~~~-~---~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll  346 (508)
                      |+++|+++.||++....++ .   ..+.++ .+++.+||+++++.++++.|++++.|+++|+|                 
T Consensus       231 D~IiGiv~~kDll~~~~~~~~~~~~~l~~~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-----------------  292 (413)
T PRK11573        231 DDAISMLRVREAYRLMTEKKEFTKENMLRA-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-----------------  292 (413)
T ss_pred             CceEEEEEHHHHHHHhhccCcCCHHHHHhh-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-----------------
Confidence            9999999999998643221 1   123343 58899999999999999999999999999999                 


Q ss_pred             ccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHH
Q 010540          347 KLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEE  426 (508)
Q Consensus       347 ~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIlee  426 (508)
                                                                                     |||+++||||+|||+||
T Consensus       293 ---------------------------------------------------------------EyG~~~GiVTleDilEe  309 (413)
T PRK11573        293 ---------------------------------------------------------------EYGDIQGLVTVEDILEE  309 (413)
T ss_pred             ---------------------------------------------------------------cCCCeEEEeeHHHHHHH
Confidence                                                                           79999999999999999


Q ss_pred             HhCCccCCCCcccc-c-cce----eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCC
Q 010540          427 LLQEEIVDETDEYV-D-VHK----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       427 ivg~eI~dE~d~~~-~-~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~  486 (508)
                      |+| ||.||+|... . ..+    +|+|+|.++++|+|+.+|++.++++++  |+|||  ..-|+.++
T Consensus       310 ivG-ei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~~~l~~~~~~--Tl~G~i~~~lg~iP~  374 (413)
T PRK11573        310 IVG-DFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDAR--TVNGVILEALEEIPV  374 (413)
T ss_pred             HhC-CCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhCCCCCCCCCe--eHHHHHHHHhCcCCC
Confidence            999 9999998532 2 222    699999999999999999986655444  55999  44444443

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=2.4e-59  Score=495.47  Aligned_cols=356  Identities=29%  Similarity=0.433  Sum_probs=303.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 010540           39 AGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDK--  116 (508)
Q Consensus        39 ~~ii~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~~~--  116 (508)
                      ++++++|+++|||||++|+|++|++|.|+++++++|+    ++|..++++.++++.+++++++|+++++...+.+...  
T Consensus         7 ~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~----~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~~   82 (429)
T COG1253           7 LLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGN----KRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPAL   82 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccC----HhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667779999999999999999999999999999977    4688899999999999999999999987655433222  


Q ss_pred             --HHHHHH-----H----HHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh---CC
Q 010540          117 --LFNQYV-----A----IILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---GH  182 (508)
Q Consensus       117 --~~~~~~-----a----~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l~---g~  182 (508)
                        ++.++.     +    +++.|+++++|||++||++|.+||++++++.++++++++++|+|++|++++++++++   |.
T Consensus        83 ~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il~l~~~  162 (429)
T COG1253          83 AALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGV  162 (429)
T ss_pred             HHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence              222211     1    456788899999999999999999999999999999999999999999999988764   43


Q ss_pred             C---c--ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHH
Q 010540          183 N---E--ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILA  257 (508)
Q Consensus       183 ~---~--~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~  257 (508)
                      +   +  ...+.++++ +++    ++.+.|.++++|++|++++|+|++++|+++||||+++++++.+.+++ ++.+.+.+
T Consensus       163 ~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~~~~~~  236 (429)
T COG1253         163 EPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILE  236 (429)
T ss_pred             CCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHHHHHHh
Confidence            3   1  345677777 665    45678999999999999999999999999999999999999999998 99999999


Q ss_pred             cCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc-cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540          258 RGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (508)
Q Consensus       258 ~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~-~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G  336 (508)
                      ++|||+|||+++.|+++|++|.||++.....++. .....-++++++||+++++.++|++|++.+.|+++|+|       
T Consensus       237 ~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-------  309 (429)
T COG1253         237 SGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVD-------  309 (429)
T ss_pred             CCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-------
Confidence            9999999999888999999999999987665532 22222246999999999999999999999999999999       


Q ss_pred             cCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEE
Q 010540          337 LPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG  416 (508)
Q Consensus       337 iv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvG  416 (508)
                                                                                               |||++.|
T Consensus       310 -------------------------------------------------------------------------EyG~~~G  316 (429)
T COG1253         310 -------------------------------------------------------------------------EYGGVEG  316 (429)
T ss_pred             -------------------------------------------------------------------------cCCCeEE
Confidence                                                                                     7999999


Q ss_pred             eechHHHHHHHhCCccCCCCccc--cccce----eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCC
Q 010540          417 IITLEDVFEELLQEEIVDETDEY--VDVHK----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       417 IVTleDIleeivg~eI~dE~d~~--~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~  486 (508)
                      +||+|||+|+|+| ||.||+|+.  .+.++    .|+|+|.++++|+++.+|.+. +++.+..|+|||  ...|+.++
T Consensus       317 lVTleDIiEeIvG-ei~de~d~~~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~~-~~~~~~~Ti~G~v~~~lg~iP~  392 (429)
T COG1253         317 LVTLEDIIEEIVG-EIPDEHDEDEEEDIIQRDDDGWLVDGRVPLEELEELLGIDL-DEEEDYDTIAGLVLSLLGRIPK  392 (429)
T ss_pred             EeEHHHHHHHHhC-CCcCcccccccccceEecCCcEEEeccccHHHHHHHhCCCC-cccCCcccHHHHHHHHhCcCCC
Confidence            9999999999999 999999963  23333    499999999999999999988 556567777999  44555553

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.8e-38  Score=292.26  Aligned_cols=224  Identities=26%  Similarity=0.413  Sum_probs=196.3

Q ss_pred             HHHhhhhhCCCcccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHH
Q 010540          173 GKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAM  252 (508)
Q Consensus       173 ~~~~~~l~g~~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal  252 (508)
                      .++++.++..  ..-+++||..++.    .+++.+.++++-+.|++++++..+.+|+|||+||+++++++.+.++. +.+
T Consensus        20 e~L~~~~f~g--Epknr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~l   92 (293)
T COG4535          20 ERLLSQLFHG--EPKNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-ECL   92 (293)
T ss_pred             HHHHHHHhcC--CCcCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HHH
Confidence            3444444432  3457899999997    45677899999999999999999999999999999999999999999 999


Q ss_pred             HHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc--ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEec
Q 010540          253 GKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (508)
Q Consensus       253 ~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~--~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe  330 (508)
                      ..+.++.|||+||+.++.|++.||++.|||++....+.  ..+.++ +||.++||++..+..+|+.|+.++.|||+|+| 
T Consensus        93 ~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViD-  170 (293)
T COG4535          93 DVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVID-  170 (293)
T ss_pred             HHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEe-
Confidence            99999999999999999999999999999998765442  456674 89999999999999999999999999999999 


Q ss_pred             CCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccC
Q 010540          331 KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIE  410 (508)
Q Consensus       331 ~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E  410 (508)
                                                                                                     |
T Consensus       171 -------------------------------------------------------------------------------E  171 (293)
T COG4535         171 -------------------------------------------------------------------------------E  171 (293)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           7


Q ss_pred             CCceEEeechHHHHHHHhCCccCCCCccccc-cce-----eEEeccccChHHHhhcCCCCCCccccCccccCCcc--cCC
Q 010540          411 DGEVIGIITLEDVFEELLQEEIVDETDEYVD-VHK-----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQS--KQG  482 (508)
Q Consensus       411 ~G~lvGIVTleDIleeivg~eI~dE~d~~~~-~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~  482 (508)
                      ||++.|+||.|||+|+||| ||+||||++.+ .++     .|.|.|.|+++++|++||....++|.+|+  ||+.  .-|
T Consensus       172 fGgVsGLVTIEDiLEqIVG-dIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~FsDeevDTI--GGLVm~afG  248 (293)
T COG4535         172 FGGVSGLVTIEDILEQIVG-DIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTHFSDEEVDTI--GGLVMQAFG  248 (293)
T ss_pred             cCCeeeeEEHHHHHHHHhc-ccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcCCCChhhhhhh--hHHHHHHhc
Confidence            9999999999999999999 99999997643 233     59999999999999999999999999998  9993  345


Q ss_pred             CCCCC
Q 010540          483 LPPKK  487 (508)
Q Consensus       483 ~~~~~  487 (508)
                      +.++.
T Consensus       249 hLP~R  253 (293)
T COG4535         249 HLPAR  253 (293)
T ss_pred             cCCCC
Confidence            55543

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=100.00  E-value=4.9e-35  Score=294.49  Aligned_cols=209  Identities=28%  Similarity=0.419  Sum_probs=181.5

Q ss_pred             hhCCCcccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHc
Q 010540          179 VLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR  258 (508)
Q Consensus       179 l~g~~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~  258 (508)
                      ++|.++  .|++||+.+++    ++.++|.++++|+++++++|+|++.+|+++|+||.++++++.+++++ ++++.+.++
T Consensus        26 ~~~~~~--~t~eEl~~l~~----~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i~~~   98 (292)
T PRK15094         26 LFHGEP--KNRDELLALIR----DSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIES   98 (292)
T ss_pred             HcCCCC--CCHHHHHHHHH----hHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHHHhc
Confidence            455443  58999999998    44567999999999999999999999999999999999999999999 999999999


Q ss_pred             CCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540          259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (508)
Q Consensus       259 ~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G  336 (508)
                      +|+|+|||+++.++++|+++.+|++......  ...+.++| +++.+|++++++.++++.|++++.|++||+|       
T Consensus        99 ~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-------  170 (292)
T PRK15094         99 AHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RQAVVVPESKRVDRMLKEFRSQRYHMAIVID-------  170 (292)
T ss_pred             CCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHc-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-------
Confidence            9999999987778999999999998644321  23477775 6677999999999999999999999999999       


Q ss_pred             cCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEE
Q 010540          337 LPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG  416 (508)
Q Consensus       337 iv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvG  416 (508)
                                                                                               |||+++|
T Consensus       171 -------------------------------------------------------------------------e~G~viG  177 (292)
T PRK15094        171 -------------------------------------------------------------------------EFGGVSG  177 (292)
T ss_pred             -------------------------------------------------------------------------CCCCEEE
Confidence                                                                                     7899999


Q ss_pred             eechHHHHHHHhCCccCCCCccccc-cce-----eEEeccccChHHHhhcCCCCCCccccCccccCCc
Q 010540          417 IITLEDVFEELLQEEIVDETDEYVD-VHK-----RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ  478 (508)
Q Consensus       417 IVTleDIleeivg~eI~dE~d~~~~-~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  478 (508)
                      +||++||+|+|+| ||.||+|...+ .++     +|+|+|.++++|+|+.+|++.+.+  +..|+|||
T Consensus       178 iVTleDIle~ivG-ei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~l~~~--~~~Tl~G~  242 (292)
T PRK15094        178 LVTIEDILELIVG-EIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDE--EVDTIGGL  242 (292)
T ss_pred             EeEHHHHHHHHhC-CCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCCCCCCC--CCccHHHH
Confidence            9999999999999 99999985432 122     699999999999999999986554  44556999

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=99.97  E-value=3.4e-33  Score=297.60  Aligned_cols=302  Identities=56%  Similarity=0.850  Sum_probs=269.5

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHH-HHHHHHHHHHhhhHHHHHHHHHHH
Q 010540           26 EGIPFGSVWWFVYAGISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKK-QAAAIFPVVQKQHQLLVTLLLCNA  104 (508)
Q Consensus        26 ~~~~~~s~~~~~~~~ii~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~-~a~~~l~l~~~~~~ll~tlli~n~  104 (508)
                      ...|+...+|+.+..++++|++++++|||.+.++++++-..++.+.+.|..++++ .++++....++.+++++|++++|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~   82 (498)
T KOG2118|consen    3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS   82 (498)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence            3567777777777777888999999999999999999999999999999877665 677888899999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhCCC
Q 010540          105 ASMEA-LPIYLDKLFNQYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHN  183 (508)
Q Consensus       105 ~~~~~-~~~~~~~~~~~~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l~g~~  183 (508)
                      +++.+ ++.++....+.|.++.++++.++.|||++|+++|.+|+..+...+.|+.++++++++|+.||++++ ++.+|..
T Consensus        83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~  161 (498)
T KOG2118|consen   83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN  161 (498)
T ss_pred             hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence            99988 777777777778888899999999999999999999999999999999999999999999999998 8778877


Q ss_pred             c-ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcE
Q 010540          184 E-ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR  262 (508)
Q Consensus       184 ~-~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr  262 (508)
                      . ....+.+++.++..+..|+.+ |.+..+|..++.+++.+.++.++++|+|..+++.++.+..+.++....+.++||||
T Consensus       162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr  240 (498)
T KOG2118|consen  162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR  240 (498)
T ss_pred             cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence            5 456678999999988888766 89999999999999999999999999999999999999999878888899999999


Q ss_pred             EEEeeCCCCcEEEEeEHhHHhccC----CCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          263 VPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       263 ~PV~~~~~d~ivGiv~~kDll~~~----~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +||++.+..+.+|.+....++...    .....++.+.+.++...+|++++..+.++.|++.+.|++.|+.
T Consensus       241 ipv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~  311 (498)
T KOG2118|consen  241 IPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN  311 (498)
T ss_pred             eeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec
Confidence            999998777788887777776655    3345678888889999999999999999999999999999986

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.94  E-value=1e-25  Score=211.87  Aligned_cols=166  Identities=27%  Similarity=0.479  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---
Q 010540           40 GISCVLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPSEKKQAAAIFPVVQKQHQLLVTLLLCNAASMEALPIYLDK---  116 (508)
Q Consensus        40 ~ii~~lllls~~fs~~E~Al~s~~~~~L~~l~~~g~~~~~~~a~~~l~l~~~~~~ll~tlli~n~~~~~~~~~~~~~---  116 (508)
                      +++++++++|||||++|+|++++++.+++.++++|+    ++++++.++++||+++++|++++|++++.+.+.+...   
T Consensus         4 ~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~----~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~   79 (183)
T PF01595_consen    4 LLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGD----KRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLAS   79 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCC----HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778899999999999999999999999999987    3678899999999999999999999988776644332   


Q ss_pred             -HHH----HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh---CCC---cc
Q 010540          117 -LFN----QYVAIILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVL---GHN---EA  185 (508)
Q Consensus       117 -~~~----~~~a~~v~t~lilifgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l~---g~~---~~  185 (508)
                       +++    .+++++++++++++|||++||++|.+||++++.+.++++++++++++|+++++.++.++++   |.+   +.
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~~~  159 (183)
T PF01595_consen   80 NLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEEDP  159 (183)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccC
Confidence             233    2456667788889999999999999999999999999999999999999999999888653   433   25


Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCChhH
Q 010540          186 LFRRAQLKALVTIHSQEAGKGGELTHDE  213 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~~g~l~~~E  213 (508)
                      .+|+|||+.+++    +++++|.++++|
T Consensus       160 ~~s~eel~~lv~----~~~e~G~i~~~E  183 (183)
T PF01595_consen  160 AVSEEELRSLVE----EGEEEGVIEEEE  183 (183)
T ss_pred             CCCHHHHHHHHH----hHHHCCCCCCCC
Confidence            789999999998    456679999876

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.68  E-value=3.7e-15  Score=144.38  Aligned_cols=136  Identities=15%  Similarity=0.287  Sum_probs=113.9

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhh-------cCcccccccccccccceEEEeCCCCchHHHHHHHHHc
Q 010540          186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGAL-------DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR  258 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl-------~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~  258 (508)
                      .++.+++.+.+.    +-.|--.|+.++-+.+.+-.       ++.+.++.|||++  +|++++.+++++ ++.+.+.++
T Consensus       202 gfs~~Dld~aL~----~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQ----RLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHH----hcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            578899998886    33344567777655443332       3578999999998  999999999999 999999999


Q ss_pred             CCcEEEEeeCCCCcEEEEeEHhHHhccCCC---------CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          259 GHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       259 ~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++..+||.|++ .+++|+|+.+|+.+....         ....++.+|..++.++.++++..+++..+.+.+.|..||+|
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld  353 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD  353 (382)
T ss_pred             Ccccccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc
Confidence            99999999976 789999999999862211         24579999999999999999999999999999999999999

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.67  E-value=1e-15  Score=163.31  Aligned_cols=141  Identities=14%  Similarity=0.274  Sum_probs=116.6

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCCh-----hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540          185 ALFRRAQLKALVTIHSQEAGKGGELTH-----DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (508)
Q Consensus       185 ~~~s~eEL~~lv~~~~~e~~~~g~l~~-----~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~  259 (508)
                      ..+|++|+..++..    .+..|.|.+     +|++++++++++++.     |.+  ++++++++.++. ++++.|.+++
T Consensus        43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            46899999998873    334688884     899999999977664     554  778999999999 9999999999


Q ss_pred             CcEEEEeeCCC--CcEEEEeEHhHHhccCCCCccccccccc-ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540          260 HSRVPVYSGNP--KNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (508)
Q Consensus       260 ~sr~PV~~~~~--d~ivGiv~~kDll~~~~~~~~~V~dim~-~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G  336 (508)
                      ++++||++++.  ++++|+|+.+|++... ....+++++|. .+++++++++++.++++.|++++.+.+||+|++|+++|
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-~~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvG  189 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITKRDIRFVK-DKGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVG  189 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEHHHHhhhh-cCCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence            99999998754  6899999999998543 23467899987 48999999999999999999999999999994443333


Q ss_pred             cC
Q 010540          337 LP  338 (508)
Q Consensus       337 iv  338 (508)
                      ++
T Consensus       190 iV  191 (450)
T TIGR01302       190 LI  191 (450)
T ss_pred             EE
Confidence            33

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.66  E-value=9.6e-16  Score=163.78  Aligned_cols=134  Identities=16%  Similarity=0.153  Sum_probs=113.0

Q ss_pred             cccHHHHHHHHHHhhhhhccC------CCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHH--
Q 010540          186 LFRRAQLKALVTIHSQEAGKG------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILA--  257 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~~------g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~--  257 (508)
                      .++.+|+..+++.    ..++      +.++++|++.+++++++++.+|+++|++  ++++++++.++. ++++.+.+  
T Consensus        89 ~l~~dd~~~ll~~----l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEE----VPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHh----CCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHH-HHHHHHHhcC
Confidence            4678888888873    2222      4799999999999999999999999996  899999999999 99999875  


Q ss_pred             ---cCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          258 ---RGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       258 ---~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                         ++...+||++++ ++++|+++.+|++...  .+.+++++|.+++.++++++++.++++.|++++.+.+||+|
T Consensus       162 ~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a~--~~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD  233 (449)
T TIGR00400       162 KTKEDIYTLYVTNES-KHLKGVLSIRDLILAK--PEEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD  233 (449)
T ss_pred             CCccceeEEEEECCC-CeEEEEEEHHHHhcCC--CCCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc
Confidence               223345555554 8899999999998653  34579999988888999999999999999999999999999

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.63  E-value=7.5e-16  Score=146.78  Aligned_cols=108  Identities=17%  Similarity=0.299  Sum_probs=99.8

Q ss_pred             HHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--ccccc
Q 010540          217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVS  294 (508)
Q Consensus       217 i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~  294 (508)
                      +.++.+..+.+|+++|++  +++++.+++|+. |+.+.+.+++++..||+++  |+++|+++..|+..+.+++  ...|+
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~~kV~  237 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLDAKVS  237 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCccccHH
Confidence            445667899999999998  999999999999 9999999999999999987  5999999999999887764  36799


Q ss_pred             ccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       295 dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++|.+.+++|.+|+.+.|+++.|.+++..+++|+|
T Consensus       238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~d  272 (294)
T COG2524         238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTD  272 (294)
T ss_pred             HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEc
Confidence            99999999999999999999999999999999999

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.48  E-value=5.9e-13  Score=143.64  Aligned_cols=149  Identities=20%  Similarity=0.290  Sum_probs=124.1

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (508)
Q Consensus       185 ~~~s~eEL~~lv~~~~~e~~~~g~l~-----~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~  259 (508)
                      ..+|++||...+.    +.+..|.|.     ++++++++++.+     ++++|.+  ++++++++.++. ++++.|.+++
T Consensus        50 ~~vT~~ela~ava----~~GglG~i~~~~~~e~~~~~I~~vk~-----~~dim~~--~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMA----REGGIGVIHKNMSIEEQAEEVRKVKR-----SESGVVT--DPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHH----hCCCCCEecCCCCHHHHHHHHHHhhh-----hhhcccC--CCeEeCCCCCHH-HHHHHHHHhC
Confidence            4678999999886    334456677     477889998876     4567775  888999999999 9999999999


Q ss_pred             CcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc-ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (508)
Q Consensus       260 ~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~-~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv  338 (508)
                      ++++||++++ ++++|+++.+|+.... ....++.++|. ++++++++++++.++++.|.+++.+.+||+|++|+++|++
T Consensus       118 ~~~lpVvd~~-g~lvGiVt~~DL~~~~-~~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiI  195 (486)
T PRK05567        118 ISGVPVVDEN-GKLVGIITNRDVRFET-DLSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI  195 (486)
T ss_pred             CCEEEEEccC-CEEEEEEEHHHhhhcc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            9999999864 8999999999997543 23457899987 7889999999999999999999999999999877777877


Q ss_pred             CCCCCCccccc
Q 010540          339 PMTDGKKPKLN  349 (508)
Q Consensus       339 ~~t~kDll~~i  349 (508)
                        |.+|+++.+
T Consensus       196 --T~~DLl~~~  204 (486)
T PRK05567        196 --TVKDIEKAE  204 (486)
T ss_pred             --EhHHhhhhh
Confidence              777776544

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.48  E-value=1.6e-13  Score=136.04  Aligned_cols=115  Identities=20%  Similarity=0.306  Sum_probs=100.7

Q ss_pred             hhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccc
Q 010540          220 ALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR  299 (508)
Q Consensus       220 vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~  299 (508)
                      .+.-+-++|.|||+|..+..++..+++++ +..+...+.+|+||||++.. .+++|+|+.||+....+  ..++..+|.+
T Consensus       182 lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~--~t~ieKVMtk  257 (432)
T COG4109         182 LIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP--STTIEKVMTK  257 (432)
T ss_pred             hhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC--CccHHHHhcc
Confidence            34446678999999999999999999998 99999999999999999976 78999999999997543  5678999999


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv  338 (508)
                      .+.+|.+.+++..+.+.|...+..+.||+|++....|++
T Consensus       258 np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGii  296 (432)
T COG4109         258 NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGII  296 (432)
T ss_pred             CCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEE
Confidence            999999999999999999999999999999544444444

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.37  E-value=6.9e-12  Score=107.56  Aligned_cols=91  Identities=27%  Similarity=0.390  Sum_probs=79.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--cccccccccccceeecCCCCHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL  314 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~dim~~~v~~V~~~~~l~d~L  314 (508)
                      ++.+++.+.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.....+.  ..++.++|..++.++++++++.+++
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~al   79 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYETLKVCEVYIVPVPIVYCDSKVTDLL   79 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhccccccccChhheeecCCcEECCCCcHHHHH
Confidence            456788999998 99999998999999999865 7899999999998643321  2568899988889999999999999


Q ss_pred             HHHHhCCCeEEEEEe
Q 010540          315 NEFQKGSSHMAAVVK  329 (508)
Q Consensus       315 ~~m~~~~~~~a~VvD  329 (508)
                      +.|.+++.+.+||+|
T Consensus        80 ~~m~~~~~~~lpVvd   94 (111)
T cd04603          80 RIFRETEPPVVAVVD   94 (111)
T ss_pred             HHHHHcCCCeEEEEc
Confidence            999999999999999

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=9.2e-12  Score=108.10  Aligned_cols=91  Identities=15%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc-----cccc------ccccccceeec
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TPVS------AVSIRRIPRVP  305 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~-----~~V~------dim~~~v~~V~  305 (508)
                      ++.+++++.++. ++++.|.+++++++||++++ ++++|+++.+|++....++.     .++.      ++|..++.+++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   79 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCS   79 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEc
Confidence            567899999999 99999999999999999864 88999999999986432211     1122      22345578999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       306 ~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~l~~~~~~m~~~~~~~l~Vvd  103 (120)
T cd04641          80 PDDCLRTIFDLIVKARVHRLVVVD  103 (120)
T ss_pred             CCCcHHHHHHHHHhcCccEEEEEC
Confidence            999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.35  E-value=4e-12  Score=130.58  Aligned_cols=104  Identities=16%  Similarity=0.108  Sum_probs=90.1

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIR  299 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~  299 (508)
                      ...+|+++|++..++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+.+....+    ..++.++|.+
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~  277 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP  277 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence            6678999999645788999999999 99999998888777777754 7899999999987654322    3579999999


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus       278 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~  307 (326)
T PRK10892        278 GGIRVRPGILAVDALNLMQSRHITSVLVAD  307 (326)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCcEEEEee
Confidence            999999999999999999999999999997

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.35  E-value=8.3e-12  Score=106.21  Aligned_cols=91  Identities=12%  Similarity=0.258  Sum_probs=80.1

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~  316 (508)
                      ++.+++++.++. ++++.+.+++++.+||++++ ++++|+++.+|++........++.++|.+++.+++++++++++++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~   80 (110)
T cd04605           3 PVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK   80 (110)
T ss_pred             CCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCccCHHHhcCCCCeEECCCCcHHHHHHH
Confidence            567889999998 99999999999999999865 8999999999998654443445888888889999999999999999


Q ss_pred             HHhCCCeEEEEEe
Q 010540          317 FQKGSSHMAAVVK  329 (508)
Q Consensus       317 m~~~~~~~a~VvD  329 (508)
                      |.+++.+.+||++
T Consensus        81 ~~~~~~~~~~Vv~   93 (110)
T cd04605          81 MERHNISALPVVD   93 (110)
T ss_pred             HHHhCCCEEeEEC
Confidence            9999999999998

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.33  E-value=1.7e-11  Score=132.18  Aligned_cols=126  Identities=16%  Similarity=0.184  Sum_probs=100.0

Q ss_pred             hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCC
Q 010540          212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPET  289 (508)
Q Consensus       212 ~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~  289 (508)
                      +.++.++++.+++     ..|++  +++++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+.... ..
T Consensus        91 ~q~~~Irkvk~~~-----~gmi~--dpvtV~pd~tV~-dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~  161 (505)
T PLN02274         91 EQAAIVRKAKSRR-----VGFVS--DPVVKSPSSTIS-SLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DR  161 (505)
T ss_pred             HHHHHHHHhhccc-----ccccC--CCeeeCCCCcHH-HHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-cc
Confidence            3456677776542     22665  788999999999 99999999999999999863  36899999999997543 34


Q ss_pred             ccccccccccc--ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcccc
Q 010540          290 ETPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKL  348 (508)
Q Consensus       290 ~~~V~dim~~~--v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~  348 (508)
                      +.+|.++|.++  ++++++++++.++++.|.+++.+.+||+|+.|.++|++  |.+|+++.
T Consensus       162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvI--Tr~DIlk~  220 (505)
T PLN02274        162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLV--TRTDVKRV  220 (505)
T ss_pred             CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHHH
Confidence            56799999866  77999999999999999999999999999655555555  55555433

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=9.4e-12  Score=106.16  Aligned_cols=91  Identities=14%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---cccccccccccceeecCCCCHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---ETPVSAVSIRRIPRVPSDMPLYDI  313 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---~~~V~dim~~~v~~V~~~~~l~d~  313 (508)
                      ++..++.+.+++ ++++.+.+++++++||++++ ++++|+++.+|+.......   ..++.++|.+++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcccccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            566788999998 99999999999999999865 7899999999998654322   346888888899999999999999


Q ss_pred             HHHHHhCCCeEEEEEe
Q 010540          314 LNEFQKGSSHMAAVVK  329 (508)
Q Consensus       314 L~~m~~~~~~~a~VvD  329 (508)
                      ++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~Vv~   95 (111)
T cd04626          80 LDIMREKQIGRLPVVD   95 (111)
T ss_pred             HHHHHHcCCCeeeEeE
Confidence            9999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.6e-11  Score=104.59  Aligned_cols=91  Identities=15%  Similarity=0.243  Sum_probs=79.1

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC-----cccccccccccceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSIRRIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~-----~~~V~dim~~~v~~V~~~~~l~  311 (508)
                      ++.+++++.++. ++++.+.+.+++++||++++ ++++|+++.+|++......     ..++.++|.+++.++++++++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   79 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD   79 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHH
Confidence            567788999998 99999999999999999875 7899999999998653321     2468888888899999999999


Q ss_pred             HHHHHHHhCCCeEEEEEe
Q 010540          312 DILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.|.+.+.+.+||+|
T Consensus        80 ~~l~~~~~~~~~~~~Vv~   97 (113)
T cd04623          80 EAMALMTERRFRHLPVVD   97 (113)
T ss_pred             HHHHHHHHcCCCEeEEEe
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=1.3e-11  Score=104.13  Aligned_cols=95  Identities=15%  Similarity=0.311  Sum_probs=84.9

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~  316 (508)
                      +++++++++++. ++.+.|.+++++.+||++++.++++|+++.+|+.+..           .  +.++.+++++.++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-----------~--~~~v~~~~~l~~a~~~   67 (98)
T cd04618           2 KLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-----------R--LVSIHPERSLFDAALL   67 (98)
T ss_pred             eEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-----------e--eEEeCCCCcHHHHHHH
Confidence            678899999999 9999999999999999986447899999999998531           1  6789999999999999


Q ss_pred             HHhCCCeEEEEEecC-CCccccCCCCCCCccc
Q 010540          317 FQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPK  347 (508)
Q Consensus       317 m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~  347 (508)
                      |.+++.+.+||+|+. |+++|++  |.+|++.
T Consensus        68 m~~~~~~~lpVvd~~~~~~~gii--t~~d~~~   97 (98)
T cd04618          68 LLKNKIHRLPVIDPSTGTGLYIL--TSRRILK   97 (98)
T ss_pred             HHHCCCCEeeEEECCCCCceEEe--ehhhhhc
Confidence            999999999999987 9999999  9998864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2e-11  Score=104.83  Aligned_cols=92  Identities=16%  Similarity=0.215  Sum_probs=79.1

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-----CCcccccccccccceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-----~~~~~V~dim~~~v~~V~~~~~l~  311 (508)
                      ++.++++++++. ++++.|.+++++.+||++++.++++|+++.+|+++...     ....++.++|.+++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIK   80 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHH
Confidence            677899999999 99999998999999999864368999999999986321     122468888888899999999999


Q ss_pred             HHHHHHHhCCCeEEEEEe
Q 010540          312 DILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~Vvd   98 (114)
T cd04630          81 YCARLMERTNIRRAPVVE   98 (114)
T ss_pred             HHHHHHHHcCCCEeeEee
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.31  E-value=1.6e-11  Score=104.37  Aligned_cols=90  Identities=19%  Similarity=0.229  Sum_probs=79.9

Q ss_pred             cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHH
Q 010540          236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN  315 (508)
Q Consensus       236 ~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~  315 (508)
                      .++.++++++++. ++++.+.+++++.+||++++ ++++|+++.+|++...  ...++.++|..++.++++++++.++++
T Consensus         2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~   77 (108)
T cd04596           2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD--PDTTIEKVMTKNPITVNPKTSVASVAH   77 (108)
T ss_pred             CccEEeCCCCCHH-HHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc--ccccHHHHhcCCCeEECCCCCHHHHHH
Confidence            3678899999998 99999999999999999864 7899999999998642  245688998888999999999999999


Q ss_pred             HHHhCCCeEEEEEe
Q 010540          316 EFQKGSSHMAAVVK  329 (508)
Q Consensus       316 ~m~~~~~~~a~VvD  329 (508)
                      .|.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~~Vv~   91 (108)
T cd04596          78 MMIWEGIEMLPVVD   91 (108)
T ss_pred             HHHHcCCCeeeEEc
Confidence            99999999999999

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.31  E-value=2.1e-11  Score=128.67  Aligned_cols=116  Identities=22%  Similarity=0.259  Sum_probs=103.1

Q ss_pred             CCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC-----CcEEEEeeCCCCcEEEEeEHhHH
Q 010540          208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSL  282 (508)
Q Consensus       208 ~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~-----~sr~PV~~~~~d~ivGiv~~kDl  282 (508)
                      .++++|++.++..+.+.+.+++.+|+.  ++++++++.|+. ++++.+++.+     ...+.|+|.+ ++++|+++.+++
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~L  189 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDL  189 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhcccee--eeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHH
Confidence            478999999999999999999999997  999999999999 9999998544     3345666765 689999999999


Q ss_pred             hccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       283 l~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +...  .+.+++++|.+.+++|+++++.+++.+.|++++.-.+||||
T Consensus       190 l~a~--~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd  234 (451)
T COG2239         190 LTAE--PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD  234 (451)
T ss_pred             hcCC--cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceEC
Confidence            9653  35679999998899999999999999999999999999999

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2.1e-11  Score=104.98  Aligned_cols=91  Identities=20%  Similarity=0.210  Sum_probs=79.5

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-----CCcccccccccccceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-----~~~~~V~dim~~~v~~V~~~~~l~  311 (508)
                      .+.++++++++. ++++.+.+.++..+||++++ ++++|+++.+|+.+...     ....++.++|.+++.++++++++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   79 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLH   79 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHH
Confidence            456788999999 99999999999999999865 78999999999886432     123568899888999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEe
Q 010540          312 DILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.|.+++.+.+||+|
T Consensus        80 ~a~~~m~~~~~~~lpVvd   97 (114)
T cd04619          80 DVWQVMKQRGLKNIPVVD   97 (114)
T ss_pred             HHHHHHHHcCCCeEEEEC
Confidence            999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.30  E-value=1.9e-11  Score=105.07  Aligned_cols=91  Identities=20%  Similarity=0.296  Sum_probs=78.5

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccccceeecCCCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~v~~V~~~~~l~d  312 (508)
                      ++..++++.++. ++++.|.+.+++++||++++ ++++|+++.+|+.....+.    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   79 (115)
T cd04593           2 PPPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAH   79 (115)
T ss_pred             CCcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHH
Confidence            455788999998 99999999999999999875 7999999999998654321    23478888888999999999999


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 010540          313 ILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       313 ~L~~m~~~~~~~a~VvD  329 (508)
                      +++.|.+++.+.+||+|
T Consensus        80 ~l~~~~~~~~~~~~Vvd   96 (115)
T cd04593          80 ALDRMASRGLRQLPVVD   96 (115)
T ss_pred             HHHHHHHcCCceeeEEe
Confidence            99999999999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.30  E-value=1.9e-11  Score=104.11  Aligned_cols=91  Identities=42%  Similarity=0.631  Sum_probs=77.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc--ccccccccccceeecCCCCHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRIPRVPSDMPLYDIL  314 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~--~~V~dim~~~v~~V~~~~~l~d~L  314 (508)
                      ++++++++.++. ++++.|.+.+++.+||++++.++++|+++.+|+......+.  .++.++ ++++.++++++++.+++
T Consensus         2 ~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~   79 (111)
T cd04590           2 DIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRDL-LRPPLFVPESTPLDDLL   79 (111)
T ss_pred             ceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCcCCHHHH-hcCCeecCCCCcHHHHH
Confidence            678899999999 99999998899999999764368999999999987543222  346665 46788999999999999


Q ss_pred             HHHHhCCCeEEEEEe
Q 010540          315 NEFQKGSSHMAAVVK  329 (508)
Q Consensus       315 ~~m~~~~~~~a~VvD  329 (508)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~Vv~   94 (111)
T cd04590          80 EEMRKERSHMAIVVD   94 (111)
T ss_pred             HHHHhcCCcEEEEEE
Confidence            999999999999999

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.29  E-value=1e-11  Score=127.30  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=89.3

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---Ccccccccccccc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRI  301 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v  301 (508)
                      ..+|+++|++..++.++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|+.+....   ...++.++|.+++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGALTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCCcCCcHHHhcCCCC
Confidence            468999999732388999999999 99999998888999999875 789999999998754322   2356899999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++++++++.++++.|.+++...+||+|
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  301 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVD  301 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            9999999999999999999999999999

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.29  E-value=2.7e-11  Score=105.36  Aligned_cols=92  Identities=18%  Similarity=0.366  Sum_probs=79.8

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--------------cccccccccccce
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP  302 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--------------~~~V~dim~~~v~  302 (508)
                      ++.+++++.++. ++.+.|.+.+++++||++++ ++++|+++.+|++......              ..++.++|.+++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVV   80 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCe
Confidence            667899999998 99999999999999999875 7899999999997643321              2368888888899


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEec
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVKA  330 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvDe  330 (508)
                      ++++++++.++++.|.+++.+.+||+|+
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~  108 (124)
T cd04600          81 TVRPDTPIAELVPLLADGGHHHVPVVDE  108 (124)
T ss_pred             eeCCCCcHHHHHHHHHhcCCCceeEEcC
Confidence            9999999999999999999999999993

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.29  E-value=9.7e-12  Score=110.75  Aligned_cols=93  Identities=19%  Similarity=0.279  Sum_probs=81.5

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC-----ccccccccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVSI  298 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~-----~~~V~dim~  298 (508)
                      ..++++.+|+.  +++.+.+++++. ++++.|.++|+|.+||.++  |+++|-++..++.+...++     +..|+++|-
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~  137 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMG  137 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHH-HHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhc
Confidence            45689999997  999999999999 9999999999999999987  7999999999998876443     357899999


Q ss_pred             ccceeecCCCCHHHHHHHHHhCC
Q 010540          299 RRIPRVPSDMPLYDILNEFQKGS  321 (508)
Q Consensus       299 ~~v~~V~~~~~l~d~L~~m~~~~  321 (508)
                      .+++.|+++.++..+-+++..+.
T Consensus       138 e~fP~Vs~~~~l~vI~~LL~~~~  160 (187)
T COG3620         138 EPFPTVSPDESLNVISQLLEEHP  160 (187)
T ss_pred             CCCCcCCCCCCHHHHHHHHhhCC
Confidence            99999999999988887776554

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.28  E-value=1.2e-11  Score=124.25  Aligned_cols=127  Identities=15%  Similarity=0.125  Sum_probs=109.2

Q ss_pred             HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc--ccceeecCCCCHHHHHHHHHhC-CCeEEE
Q 010540          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKG-SSHMAA  326 (508)
Q Consensus       250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~-~~~~a~  326 (508)
                      |.++.+.+..++..|++..+++++.|++.++++.         |+|+|+  ..+..+..+++.+++.+++.+. |.++++
T Consensus       168 EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~t---------V~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRipl  238 (423)
T COG4536         168 EELRTAVNESGSEGSVNKIDRDMLLGVLDLENLT---------VSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPL  238 (423)
T ss_pred             HHHHHHHHHhhcccccccccHHHHhcccccccce---------eeeeeccccceeeecCCCCHHHHHHHHhhCCCCceee
Confidence            7789999999999999887779999999988765         999997  5677899999999999999766 888888


Q ss_pred             EEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhccc
Q 010540          327 VVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSS  392 (508)
Q Consensus       327 VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~  392 (508)
                      +.|+-++++|++  |.||+++.+.+...+..     ..+....++|||||+++++.+++.+|++++
T Consensus       239 yr~~~DnIiGvl--h~r~llr~l~e~~~~~k-----~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k  297 (423)
T COG4536         239 YRDDLDNIIGVL--HVRDLLRLLNEKNEFTK-----EDILRAADEPYFVPEGTPLSDQLVAFQRNK  297 (423)
T ss_pred             ecCChhHhhhhh--hHHHHHHHhhccCcccH-----hHHHHHhcCCeecCCCCcHHHHHHHHHHhc
Confidence            889999999999  99999988876553221     145667899999999999999999999984

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=2.9e-11  Score=103.18  Aligned_cols=91  Identities=20%  Similarity=0.305  Sum_probs=78.5

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---CcccccccccccceeecCCCCHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI  313 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~~V~~~~~l~d~  313 (508)
                      ++..++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|++.....   ...++.++|.++++++++++++.++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCCCccCHHHhccCCCEEECCCCcHHHH
Confidence            456788999998 99999999999999999876 899999999999765332   2346888888889999999999999


Q ss_pred             HHHHHhCCCeEEEEEe
Q 010540          314 LNEFQKGSSHMAAVVK  329 (508)
Q Consensus       314 L~~m~~~~~~~a~VvD  329 (508)
                      ++.|.+++...+||+|
T Consensus        80 ~~~~~~~~~~~~~Vv~   95 (112)
T cd04624          80 AKLMRKNNIRHHLVVD   95 (112)
T ss_pred             HHHHHHcCccEEEEEc
Confidence            9999998889999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=3.7e-11  Score=105.33  Aligned_cols=91  Identities=16%  Similarity=0.236  Sum_probs=76.2

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc----c-------------ccccccc
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET----P-------------VSAVSIR  299 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~----~-------------V~dim~~  299 (508)
                      ++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++....+...    +             ..+.|.+
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04642           2 KVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR   79 (126)
T ss_pred             CeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC
Confidence            567899999999 99999999999999999875 899999999999875432211    0             1234567


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd  109 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVD  109 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEEC
Confidence            888999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=3.2e-11  Score=105.03  Aligned_cols=92  Identities=16%  Similarity=0.276  Sum_probs=79.2

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---------------cccccccccccc
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------ETPVSAVSIRRI  301 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---------------~~~V~dim~~~v  301 (508)
                      ++.+++++.++. ++++.+.+.+++.+||++++.++++|+++.+|++....+.               ..++.++|.+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNV   80 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCc
Confidence            567789999998 9999999999999999986447899999999998644321               236788888889


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++++++.++++.|.+.+.+.+||+|
T Consensus        81 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~  108 (125)
T cd04631          81 ITITPDDSIKDAAELMLEKRVGGLPVVD  108 (125)
T ss_pred             eEeCCCCcHHHHHHHHHHcCCceEEEEc
Confidence            9999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=2.8e-11  Score=103.05  Aligned_cols=91  Identities=29%  Similarity=0.451  Sum_probs=78.8

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--CcccccccccccceeecCCCCHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL  314 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--~~~~V~dim~~~v~~V~~~~~l~d~L  314 (508)
                      ++.++++++++. ++++.+.+.+++++||++++ ++++|+++.+|+......  ...++.++|.+++.++++++++.+++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~   79 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGPDAPVRGVMRRDFPTVSPSATLDAVL   79 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCCCCcHHHHhcCCCcEECCCCcHHHHH
Confidence            456788999998 99999988899999999875 789999999999864322  23478888888999999999999999


Q ss_pred             HHHHhCCCeEEEEEe
Q 010540          315 NEFQKGSSHMAAVVK  329 (508)
Q Consensus       315 ~~m~~~~~~~a~VvD  329 (508)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~Vv~   94 (111)
T cd04639          80 RLMQQGGAPAVPVVD   94 (111)
T ss_pred             HHHHhcCCceeeEEc
Confidence            999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.26  E-value=2.9e-11  Score=129.43  Aligned_cols=118  Identities=15%  Similarity=0.192  Sum_probs=104.5

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccccccee
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR  303 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~  303 (508)
                      ...+++++|++  ++++++++.++. ++++.|.+++++.+||++++ ++++|+|+.+|+....  ...++.++|.+++.+
T Consensus        87 ~~VKv~~iMi~--~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~--~~~~V~diMt~~~it  160 (479)
T PRK07807         87 AWVKSRDLVFD--TPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD--RFTQVRDVMSTDLVT  160 (479)
T ss_pred             hhccccccccc--CCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc--cCCCHHHhccCCceE
Confidence            45678899986  888999999999 99999999999999999865 7899999999997542  235699999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccc
Q 010540          304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (508)
Q Consensus       304 V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i  349 (508)
                      +++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++..
T Consensus       161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGII--T~~DIl~~~  204 (479)
T PRK07807        161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVL--TRTGALRAT  204 (479)
T ss_pred             ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEE--EHHHHHHHh
Confidence            99999999999999999999999999888999999  888887544

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=3.7e-11  Score=107.25  Aligned_cols=91  Identities=15%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---------------------------
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------------------------  289 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---------------------------  289 (508)
                      ++.++++++++. ++++.|.+.+++.+||++++ ++++|+++.+|++......                           
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (135)
T cd04621           2 DIATVHPEHSLL-HVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEV   79 (135)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccc
Confidence            567789999998 99999999999999999865 8999999999998654311                           


Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ..+++++|.+++.++++++++.++++.|.+++.+.+||++
T Consensus        80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~  119 (135)
T cd04621          80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD  119 (135)
T ss_pred             cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe
Confidence            2468889888889999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.25  E-value=2.5e-11  Score=134.03  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=89.9

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Cccccccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSI  298 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~  298 (508)
                      ++..+|+|+|++  +..++++++++. |+++.+.+++++.+||+|++ ++++|+++.+|+.+...+    .+.++.++|.
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~  519 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAH  519 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhcc
Confidence            566799999987  667899999998 99999999999999999875 789999999999874211    2356889998


Q ss_pred             ccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++.++++++++.++++.|.+++.+..||+|
T Consensus       520 ~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd  550 (574)
T PRK01862        520 TPFPLLTPDMPLGDALEHFMAFQGERLPVVE  550 (574)
T ss_pred             CCCeeECCCCCHHHHHHHHHhcCCCeeeeEe
Confidence            8999999999999999999999999999998

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=6e-11  Score=102.82  Aligned_cols=91  Identities=21%  Similarity=0.311  Sum_probs=78.8

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-------------Cccccccccccccee
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------------TETPVSAVSIRRIPR  303 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-------------~~~~V~dim~~~v~~  303 (508)
                      ++.+++++.++. ++.+.|.+.+++++||++++ ++++|+++.+|++.....             ...++.++|.+++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLT   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeE
Confidence            456788999998 99999999999999999865 799999999999865321             234678888888999


Q ss_pred             ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       304 V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++++.++++.|++++.+.+||+|
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04803          80 VTPDTPLREAAEIMVENKIGCLPVVD  105 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEEEEc
Confidence            99999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=4.9e-11  Score=103.98  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=75.2

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--c-----------cccccccccccee
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--E-----------TPVSAVSIRRIPR  303 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~-----------~~V~dim~~~v~~  303 (508)
                      ++.+++.++++. ++++.|.+++++++||++++.++++|+++.+|+++.....  .           ..+.++|.+++.+
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVIS   80 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceE
Confidence            467788999998 9999999889999999986436899999999987642211  0           0122456788889


Q ss_pred             ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       304 V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        81 v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (123)
T cd04627          81 INGDQPLIDALHLMHNEGISSVAVVD  106 (123)
T ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEC
Confidence            99999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.24  E-value=8.2e-11  Score=99.95  Aligned_cols=90  Identities=22%  Similarity=0.331  Sum_probs=78.7

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---CcccccccccccceeecCCCCHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDI  313 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~~V~~~~~l~d~  313 (508)
                      ++.+++++.++. ++++.|.+.+++.+||+++  ++++|+++.+|+.+....   ...++.++|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPDLQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCCCceEECCCCCHHHH
Confidence            566788999998 9999999889999999976  789999999999865432   2356888888889999999999999


Q ss_pred             HHHHHhCCCeEEEEEe
Q 010540          314 LNEFQKGSSHMAAVVK  329 (508)
Q Consensus       314 L~~m~~~~~~~a~VvD  329 (508)
                      ++.|.+.+.+.+||+|
T Consensus        79 l~~~~~~~~~~~~Vv~   94 (111)
T cd04611          79 RQLMREHGIRHLVVVD   94 (111)
T ss_pred             HHHHHHcCCeEEEEEC
Confidence            9999999999999998

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.24  E-value=5.8e-11  Score=101.26  Aligned_cols=91  Identities=15%  Similarity=0.247  Sum_probs=79.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccccceeecCCCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~v~~V~~~~~l~d  312 (508)
                      ++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.....+.    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   79 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED   79 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHH
Confidence            456789999999 99999999999999999875 7899999999998643221    25688888888999999999999


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 010540          313 ILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       313 ~L~~m~~~~~~~a~VvD  329 (508)
                      +++.|++.+.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~Vv~   96 (114)
T cd04613          80 ALKKFEDSDYEQLPVVD   96 (114)
T ss_pred             HHHHHhhCCccEeeEEe
Confidence            99999999999999998

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.24  E-value=7.8e-11  Score=126.96  Aligned_cols=127  Identities=13%  Similarity=0.209  Sum_probs=106.0

Q ss_pred             hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCC
Q 010540          212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPET  289 (508)
Q Consensus       212 ~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~  289 (508)
                      +..+.++++.+     +++.|++  ++++++++.++. ++++.|.+++++.+||++++  .++++|+++.+|+.... ..
T Consensus        87 ~~~~~v~kvk~-----~e~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~~  157 (495)
T PTZ00314         87 EQVEEVRKVKR-----FENGFIM--DPYVLSPNHTVA-DVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-DK  157 (495)
T ss_pred             HHHHHHhhccc-----ccccccc--CCeecCCCCCHH-HHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-cC
Confidence            34556666654     4456765  678999999999 99999999999999999863  36899999999997433 33


Q ss_pred             cccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccc
Q 010540          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (508)
Q Consensus       290 ~~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i  349 (508)
                      ..++.++|.+  +++++++++++.++++.|++++.+.+||+|+.|.++|++  |.+|+++..
T Consensus       158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGII--T~~DIl~~~  217 (495)
T PTZ00314        158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALV--SRSDLKKNR  217 (495)
T ss_pred             CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEE--EehHhhhcc
Confidence            4679999976  789999999999999999999999999999999999999  999887544

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=7.1e-11  Score=101.29  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=75.7

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---------cccccccccccceeecCC
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---------ETPVSAVSIRRIPRVPSD  307 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---------~~~V~dim~~~v~~V~~~  307 (508)
                      ++++++.++++. ++++.|.+.+++.+||++++ ++++|+++.+|+.+.....         ..++.++|.+++.+++++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~   79 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDD   79 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCC
Confidence            677899999998 99999999999999999864 7899999999998754321         346888888889999999


Q ss_pred             CCHHHHHHHHHhCCCeEEEEEe
Q 010540          308 MPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       308 ~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++.++++.|.+.+  .+||+|
T Consensus        80 ~~l~~a~~~~~~~~--~~~Vv~   99 (116)
T cd04643          80 ADIEEILHLLIDQP--FLPVVD   99 (116)
T ss_pred             CCHHHHHHHHhcCC--ceeEEe
Confidence            99999999998754  588988

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.23  E-value=9.2e-11  Score=98.74  Aligned_cols=88  Identities=11%  Similarity=0.243  Sum_probs=77.4

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~  316 (508)
                      ++.++++++++. ++++.|.+++++.+||+++  ++++|+++.+|+.....  ..++.++|..++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   76 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAHP--NRLVADAMTREVVTISPEASLLEAKRL   76 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhcccc--cCCHHHHccCCCEEECCCCCHHHHHHH
Confidence            456788999998 9999998889999999973  78999999999986532  346888888889999999999999999


Q ss_pred             HHhCCCeEEEEEe
Q 010540          317 FQKGSSHMAAVVK  329 (508)
Q Consensus       317 m~~~~~~~a~VvD  329 (508)
                      |.+++.+.+||+|
T Consensus        77 ~~~~~~~~~~Vv~   89 (105)
T cd04599          77 MEEKKIERLPVLR   89 (105)
T ss_pred             HHHcCCCEeeEEE
Confidence            9999999999998

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=6.4e-11  Score=102.57  Aligned_cols=92  Identities=14%  Similarity=0.246  Sum_probs=78.0

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Ccccccccccc--cceeecCCCCH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIR--RIPRVPSDMPL  310 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~--~v~~V~~~~~l  310 (508)
                      ++.+++++.++. ++++.|.+++.+.+||.+++ ++++|+++.+|+......    ...++.++|.+  ++.++++++++
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l   79 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESV   79 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcH
Confidence            456889999998 99999988999999999865 789999999998865421    13457778764  68899999999


Q ss_pred             HHHHHHHHhCCCeEEEEEec
Q 010540          311 YDILNEFQKGSSHMAAVVKA  330 (508)
Q Consensus       311 ~d~L~~m~~~~~~~a~VvDe  330 (508)
                      .++++.|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~~~~lpVvd~   99 (118)
T cd04617          80 LEAAKKLIEHQVDSLPVVEK   99 (118)
T ss_pred             HHHHHHHHHcCCCEeeEEeC
Confidence            99999999999999999994

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.23  E-value=9.4e-11  Score=99.66  Aligned_cols=90  Identities=18%  Similarity=0.249  Sum_probs=78.4

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--cccccccccccceeecCCCCHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIPRVPSDMPLYDIL  314 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~dim~~~v~~V~~~~~l~d~L  314 (508)
                      +++.++.++++. ++++.|.+.+++++||+++  ++++|+++.+|+++....+  ..++.++|.+++.++++++++.+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLELAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccccCHHHHhcCCceEECCCCCHHHHH
Confidence            566788999998 9999999999999999986  7899999999998754332  2467888878889999999999999


Q ss_pred             HHHHhCCCeEEEEEe
Q 010540          315 NEFQKGSSHMAAVVK  329 (508)
Q Consensus       315 ~~m~~~~~~~a~VvD  329 (508)
                      +.|.+.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~V~~   93 (110)
T cd04588          79 RLMNKHNVGRLIVTD   93 (110)
T ss_pred             HHHHhcCCCEEEEEC
Confidence            999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=7e-11  Score=104.43  Aligned_cols=91  Identities=16%  Similarity=0.252  Sum_probs=78.1

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC---c---------------------cc
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET---E---------------------TP  292 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~---~---------------------~~  292 (508)
                      ++.+++++.++. ++++.+.+.+++++||++++ ++++|+++.+|+.......   .                     .+
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKK   79 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCC
Confidence            456789999998 99999998999999999875 7899999999998643221   1                     16


Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++|.+++.++++++++.++++.|.+.+.+.+||+|
T Consensus        80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~  116 (132)
T cd04636          80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD  116 (132)
T ss_pred             HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE
Confidence            7888888899999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.22  E-value=1.1e-10  Score=98.88  Aligned_cols=91  Identities=16%  Similarity=0.271  Sum_probs=79.0

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~  316 (508)
                      ++..++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+..... ...++.++|.+.+.++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~~~~   79 (109)
T cd04583           3 NPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK-EAKSLEDIMLEDVFTVQPDASLRDVLGL   79 (109)
T ss_pred             CCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh-cCCcHhHhhcCCceEECCCCcHHHHHHH
Confidence            566789999998 99999998999999999875 78999999999986432 2356888888889999999999999999


Q ss_pred             HHhCCCeEEEEEec
Q 010540          317 FQKGSSHMAAVVKA  330 (508)
Q Consensus       317 m~~~~~~~a~VvDe  330 (508)
                      |.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~vv~~   93 (109)
T cd04583          80 VLKRGPKYVPVVDE   93 (109)
T ss_pred             HHHcCCceeeEECC
Confidence            99999999999993

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.22  E-value=1e-10  Score=99.40  Aligned_cols=90  Identities=20%  Similarity=0.301  Sum_probs=78.2

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc---ccccccccccceeecCCCCHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRIPRVPSDMPLYDI  313 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~---~~V~dim~~~v~~V~~~~~l~d~  313 (508)
                      ++..++++.++. ++++.|.+.+++++||+++  ++++|+++.+|+........   .++.++|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGREATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcccccCHHHhccCCCeEECCCCCHHHH
Confidence            567789999998 9999999889999999986  78999999999986543322   15677888899999999999999


Q ss_pred             HHHHHhCCCeEEEEEe
Q 010540          314 LNEFQKGSSHMAAVVK  329 (508)
Q Consensus       314 L~~m~~~~~~~a~VvD  329 (508)
                      ++.|++++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~V~~   94 (111)
T cd04612          79 LKRMAERDIGRLPVVD   94 (111)
T ss_pred             HHHHHhCCCCeeeEEc
Confidence            9999999999999998

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.22  E-value=5.6e-11  Score=127.95  Aligned_cols=106  Identities=14%  Similarity=0.153  Sum_probs=92.5

Q ss_pred             EEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCCcccccccccc--cceeecCCCCHHHHH
Q 010540          239 FSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDIL  314 (508)
Q Consensus       239 v~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~--~v~~V~~~~~l~d~L  314 (508)
                      .++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+.......+.+++++|.+  ++.++++++++.+++
T Consensus       108 ~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl  186 (502)
T PRK07107        108 SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN  186 (502)
T ss_pred             CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHHhCCCCCeEEECCCCcHHHHH
Confidence            4789999999 99999999999999999862  378999999999975433345679999985  778899999999999


Q ss_pred             HHHHhCCCeEEEEEecCCCccccCCCCCCCccc
Q 010540          315 NEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (508)
Q Consensus       315 ~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~  347 (508)
                      +.|.+++.+.+||+|+.|.++|+|  |.+|+++
T Consensus       187 ~lM~e~~i~~LPVVD~~g~LvGII--T~~Dilk  217 (502)
T PRK07107        187 DIIWDHKLNTLPIVDKNGNLVYLV--FRKDYDS  217 (502)
T ss_pred             HHHHHcCCCEEEEEcCCCeEEEEE--EhHHHHh
Confidence            999999999999999888888888  8888875

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=7.5e-11  Score=103.44  Aligned_cols=91  Identities=19%  Similarity=0.310  Sum_probs=73.5

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC----------CCCccccccccccccee--e
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----------PETETPVSAVSIRRIPR--V  304 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~----------~~~~~~V~dim~~~v~~--V  304 (508)
                      ++.+++.++++. ++++.|.++++..+||.+++ ++++|+++.+|+....          .....++.++|.++...  +
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~   79 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKAL   79 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccc
Confidence            456788999998 99999988888899999865 7899999999988521          11235688888655433  3


Q ss_pred             ----cCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          305 ----PSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       305 ----~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                          .+++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~l~~~l~~m~~~~~~~lpVvd  108 (126)
T cd04640          80 DLEELENASVGDVVETLKASGRQHALVVD  108 (126)
T ss_pred             cHHHhccCcHHHHHHHHHHCCCceEEEEE
Confidence                3789999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=9.1e-11  Score=101.66  Aligned_cols=91  Identities=12%  Similarity=0.223  Sum_probs=78.1

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-------------CCccccccccccccee
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR  303 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-------------~~~~~V~dim~~~v~~  303 (508)
                      ++.+++++.++. ++++.+.+.+++.+||++++ ++++|+++.+|++....             ....++.++|.+++..
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS   79 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCee
Confidence            567889999998 99999998999999999864 89999999999985311             1234577888888899


Q ss_pred             ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       304 V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vvd  105 (122)
T cd04635          80 VTPDDSIATAVELMLEHDIGRLPVVN  105 (122)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeeeEEc
Confidence            99999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.21  E-value=1.2e-10  Score=99.71  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---CcccccccccccceeecCCCCHHHHH
Q 010540          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDIL  314 (508)
Q Consensus       238 vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~~V~~~~~l~d~L  314 (508)
                      .++++.++++. ++++.|.+.+++.+||++++ ++++|+++.+|+.....+   ...++.++|..++.++++++++.+++
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSLDDPVSEVMNRNPITAKVGSSREEIL   81 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence            45688999998 99999988899999999865 789999999998754322   23568888878888999999999999


Q ss_pred             HHHHhCCCeEEEEEe
Q 010540          315 NEFQKGSSHMAAVVK  329 (508)
Q Consensus       315 ~~m~~~~~~~a~VvD  329 (508)
                      +.|.+++.+.+||+|
T Consensus        82 ~~~~~~~~~~~~Vv~   96 (113)
T cd04607          82 ALMRERSIRHLPILD   96 (113)
T ss_pred             HHHHHCCCCEEEEEC
Confidence            999999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.20  E-value=1.3e-10  Score=98.52  Aligned_cols=91  Identities=18%  Similarity=0.245  Sum_probs=76.7

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecC-CCCHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS-DMPLYDILN  315 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~-~~~l~d~L~  315 (508)
                      ++..++.+.++. ++++.+.+++++++||++++ ++++|+++.+|+..... ...++.++|..++..+.. ++++.++++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~   79 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-LDKPVSEVMTPENLLTTVEGTSLEEALE   79 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-CCCCHHHhcccCceEEecCCCCHHHHHH
Confidence            567788999998 99999999999999999875 88999999999875432 345788888766666666 999999999


Q ss_pred             HHHhCCCeEEEEEec
Q 010540          316 EFQKGSSHMAAVVKA  330 (508)
Q Consensus       316 ~m~~~~~~~a~VvDe  330 (508)
                      .|.+++.+.+||+|+
T Consensus        80 ~~~~~~~~~~~Vv~~   94 (110)
T cd04601          80 LLHEHKIEKLPVVDD   94 (110)
T ss_pred             HHHHhCCCeeeEEcC
Confidence            999999999999993

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.20  E-value=1.5e-10  Score=98.71  Aligned_cols=90  Identities=19%  Similarity=0.264  Sum_probs=77.8

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----CcccccccccccceeecCCCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v~~V~~~~~l~d  312 (508)
                      +++.++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|+......    ...++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFN   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHH
Confidence            456788999998 9999999999999999986  689999999999865322    235688888888999999999999


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 010540          313 ILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       313 ~L~~m~~~~~~~a~VvD  329 (508)
                      +++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~Vv~   95 (111)
T cd04589          79 ALLLMTRHRIHRVVVRE   95 (111)
T ss_pred             HHHHHHHhCccEEEEee
Confidence            99999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.20  E-value=1.7e-10  Score=97.37  Aligned_cols=88  Identities=15%  Similarity=0.302  Sum_probs=77.0

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~  316 (508)
                      ++.+++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|++...  ...++.++|..++.++++++++.++++.
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (107)
T cd04610           3 DVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD--PDETVEEIMSKDLVVAVPEMDIMDAARV   77 (107)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC--ccccHHHhCCCCCeEECCCCCHHHHHHH
Confidence            667889999998 9999998888889999975  7899999999998642  2346888888888899999999999999


Q ss_pred             HHhCCCeEEEEEe
Q 010540          317 FQKGSSHMAAVVK  329 (508)
Q Consensus       317 m~~~~~~~a~VvD  329 (508)
                      |.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~Vv~   90 (107)
T cd04610          78 MFRTGISKLPVVD   90 (107)
T ss_pred             HHHhCCCeEeEEC
Confidence            9999999999998

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.20  E-value=4.6e-11  Score=104.98  Aligned_cols=82  Identities=18%  Similarity=0.306  Sum_probs=70.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC----CCCcccccccccccceeecCCCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR----PETETPVSAVSIRRIPRVPSDMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~----~~~~~~V~dim~~~v~~V~~~~~l~d  312 (508)
                      ++.+++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++...    .....++.++|.+++.++.+++++.+
T Consensus         3 ~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~   80 (124)
T cd04608           3 APVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHH
Confidence            667899999998 99999999999999999865 7899999999998532    22346899999999999999999999


Q ss_pred             HHHHHHhC
Q 010540          313 ILNEFQKG  320 (508)
Q Consensus       313 ~L~~m~~~  320 (508)
                      +.+.|...
T Consensus        81 v~~~~~~~   88 (124)
T cd04608          81 LSRILETD   88 (124)
T ss_pred             HHhhcccC
Confidence            99977543

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.20  E-value=2.1e-10  Score=96.82  Aligned_cols=88  Identities=11%  Similarity=0.088  Sum_probs=76.4

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~  316 (508)
                      ++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+.....   .++.++|.+....+++++++.++++.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG---GCCGDHAEPFKVTVSVDDDLRIVLSR   76 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc---cchhhhcccCCEEECCCCCHHHHHHH
Confidence            556788999998 99999988899999999765 79999999999986432   34778877777889999999999999


Q ss_pred             HHhCCCeEEEEEe
Q 010540          317 FQKGSSHMAAVVK  329 (508)
Q Consensus       317 m~~~~~~~a~VvD  329 (508)
                      |.+++...+||+|
T Consensus        77 ~~~~~~~~~~Vv~   89 (106)
T cd04582          77 MFAHDMSWLPCVD   89 (106)
T ss_pred             HHHCCCCeeeEEC
Confidence            9999999999999

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.19  E-value=7e-11  Score=101.35  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=89.8

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcC-CcEEEEeeCCCCcEEEEeEHhHHhccCCCC--cccccccccc--cceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPET--ETPVSAVSIR--RIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~-~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--~~~V~dim~~--~v~~V~~~~~l~  311 (508)
                      ++.++++++++. ++++.+.+++ ++.+||++++ ++++|+++.+|++......  ..++.++|..  ++..+++++++.
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHH
Confidence            566789999998 9999887665 8899999865 7899999999998754322  3568888752  356899999999


Q ss_pred             HHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccc
Q 010540          312 DILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~  347 (508)
                      ++++.|++++.+.+||+|++|.++|++  +.+|+++
T Consensus        80 ~a~~~~~~~~~~~l~Vv~~~~~~~Gvl--~~~di~~  113 (114)
T cd04801          80 EVLKLLEEQGLDELAVVEDSGQVIGLI--TEADLLR  113 (114)
T ss_pred             HHHHHHHHCCCCeeEEEcCCCcEEEEE--eccceec
Confidence            999999999999999999989999999  8888864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=1.6e-10  Score=98.65  Aligned_cols=90  Identities=13%  Similarity=0.231  Sum_probs=77.2

Q ss_pred             eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----CcccccccccccceeecCCCCHHHH
Q 010540          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSDMPLYDI  313 (508)
Q Consensus       238 vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v~~V~~~~~l~d~  313 (508)
                      ...+++++++. ++++.+.+++++++||++++ ++++|+++.+|+.+....    ...++.++|.+++.++++++++.++
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   80 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA   80 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHH
Confidence            35678999998 99999999999999999865 789999999999864221    2356888888889999999999999


Q ss_pred             HHHHHhCCCeEEEEEe
Q 010540          314 LNEFQKGSSHMAAVVK  329 (508)
Q Consensus       314 L~~m~~~~~~~a~VvD  329 (508)
                      ++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~Vvd   96 (113)
T cd04615          81 RWLMSNNNISRLPVLD   96 (113)
T ss_pred             HHHHHHcCCCeeeEEC
Confidence            9999999988899998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=1.4e-10  Score=101.73  Aligned_cols=91  Identities=14%  Similarity=0.276  Sum_probs=77.1

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----------------Ccccccccccc
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----------------TETPVSAVSIR  299 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----------------~~~~V~dim~~  299 (508)
                      ++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+......                 ...++.++|.+
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS   79 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC
Confidence            566788999998 99999999999999999876 789999999998743211                 12457888888


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++++++++.++++.|.+++.+.+||++
T Consensus        80 ~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~  109 (128)
T cd04632          80 PVITASPNDSVRDAVDRMLENDDSSVVVVT  109 (128)
T ss_pred             CCceECCCCcHHHHHHHHHhCCCCeEeEec
Confidence            899999999999999999999888888875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.19  E-value=1.6e-10  Score=99.60  Aligned_cols=90  Identities=18%  Similarity=0.245  Sum_probs=77.9

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--------------cccccccccccce
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--------------ETPVSAVSIRRIP  302 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--------------~~~V~dim~~~v~  302 (508)
                      ++.+++.+.++. ++++.|.+.+++.+||+++  ++++|+++.+|+.......              ..++.++|.+++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPI   78 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCe
Confidence            456789999999 9999999999999999986  7999999999998654321              2457788888899


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++++++.++++.|++.+.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~  105 (122)
T cd04585          79 TVSPDASVEEAAELMLERKISGLPVVD  105 (122)
T ss_pred             EeCCCCcHHHHHHHHHHcCCCceeEEC
Confidence            999999999999999999999999998

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.18  E-value=2e-10  Score=97.75  Aligned_cols=90  Identities=20%  Similarity=0.266  Sum_probs=77.8

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-C---CcccccccccccceeecCCCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-E---TETPVSAVSIRRIPRVPSDMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-~---~~~~V~dim~~~v~~V~~~~~l~d  312 (508)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|+..... .   ...++.++|.++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~   78 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFE   78 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHH
Confidence            567789999998 9999998889999999986  89999999999885321 1   235688888889999999999999


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 010540          313 ILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       313 ~L~~m~~~~~~~a~VvD  329 (508)
                      +++.|.+++.+.+||++
T Consensus        79 ~~~~~~~~~~~~~~Vv~   95 (111)
T cd04800          79 ALLLMLERGIHHLPVVD   95 (111)
T ss_pred             HHHHHHHcCCCeeeEeE
Confidence            99999999999999998

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=1.2e-10  Score=99.63  Aligned_cols=91  Identities=22%  Similarity=0.270  Sum_probs=78.0

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC------CcccccccccccceeecCCCCH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE------TETPVSAVSIRRIPRVPSDMPL  310 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~------~~~~V~dim~~~v~~V~~~~~l  310 (508)
                      ++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+++...+      ...++.++|.+++.++++++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l   79 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSI   79 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcH
Confidence            456788999998 99999988899999999865 789999999999864321      2356888888888899999999


Q ss_pred             HHHHHHHHhCCCeEEEEEe
Q 010540          311 YDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       311 ~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~~~Vv~   98 (114)
T cd04629          80 VDLAQLMLKAKPKRYPVVD   98 (114)
T ss_pred             HHHHHHHHHhCCCccCEEE
Confidence            9999999999988899998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=3.2e-10  Score=94.97  Aligned_cols=78  Identities=8%  Similarity=0.175  Sum_probs=69.6

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~  316 (508)
                      ++.+++++.++. ++++.|.+.+++.+||++++ ++++|+++.+|+....             .+.++++++++.++++.
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~-------------~~~~v~~~~~l~~a~~~   66 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS-------------EVVTATKRTTVSECAQK   66 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC-------------CcEEecCCCCHHHHHHH
Confidence            567889999998 99999988999999999865 7899999999998531             16789999999999999


Q ss_pred             HHhCCCeEEEEEe
Q 010540          317 FQKGSSHMAAVVK  329 (508)
Q Consensus       317 m~~~~~~~a~VvD  329 (508)
                      |.+++.+.+||+|
T Consensus        67 m~~~~~~~lpVv~   79 (96)
T cd04614          67 MKRNRIEQIPIIN   79 (96)
T ss_pred             HHHhCCCeeeEEC
Confidence            9999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.17  E-value=2.4e-10  Score=97.25  Aligned_cols=90  Identities=20%  Similarity=0.354  Sum_probs=78.5

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--CcccccccccccceeecCCCCHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDIL  314 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--~~~~V~dim~~~v~~V~~~~~l~d~L  314 (508)
                      ++.+++.+.++. ++.+.+.+.+++++||+++  ++++|+++.+|+......  ...++.++|.+++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGLGHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcccccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            567889999998 9999998889999999986  789999999998764322  23578888888899999999999999


Q ss_pred             HHHHhCCCeEEEEEe
Q 010540          315 NEFQKGSSHMAAVVK  329 (508)
Q Consensus       315 ~~m~~~~~~~a~VvD  329 (508)
                      +.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~V~~   94 (110)
T cd04595          80 ELMVEHDIGRVPVVE   94 (110)
T ss_pred             HHHHHcCCCeeEEEe
Confidence            999999999999988

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.17  E-value=2.1e-10  Score=98.57  Aligned_cols=91  Identities=16%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCCcccccccccccceeecC--CCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPS--DMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~--~~~l~d  312 (508)
                      ++.+++.++++. ++++.|.+.+++.+||+++.  .++++|+++.+|+..... ...+++++|.++...+..  ++++.+
T Consensus         3 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~~   80 (114)
T cd04602           3 DPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-SETPLSEVMTPREVLVVAPTGITLEE   80 (114)
T ss_pred             CCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-cCCCHHHhcCCCceEEECCCCCCHHH
Confidence            566788999998 99999988899999999852  378999999999875432 235588888776677755  999999


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 010540          313 ILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       313 ~L~~m~~~~~~~a~VvD  329 (508)
                      +++.|++++.+.+||+|
T Consensus        81 ~l~~~~~~~~~~~pVv~   97 (114)
T cd04602          81 ANEILRESKKGKLPIVN   97 (114)
T ss_pred             HHHHHHhcCCCceeEEC
Confidence            99999999999999998

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.17  E-value=3.2e-10  Score=95.91  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=74.5

Q ss_pred             EEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHh
Q 010540          240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK  319 (508)
Q Consensus       240 ~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~  319 (508)
                      +++++.++. ++++.+.+.+++++||+++  ++++|+++.+|+.....   .++.++|..+..+++++.++.++++.|.+
T Consensus         5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~---~~~~~~~~~~~~~v~~~~~l~~a~~~~~~   78 (104)
T cd04594           5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY---GDVVDYIVRGIPYVRLTSTAEEAWEVMMK   78 (104)
T ss_pred             EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc---cchhhhhhcCCcEEcCCCCHHHHHHHHHH
Confidence            578899998 9999999999999999985  78999999999986432   34777888888999999999999999999


Q ss_pred             CCCeEEEEEe
Q 010540          320 GSSHMAAVVK  329 (508)
Q Consensus       320 ~~~~~a~VvD  329 (508)
                      ++.+.+||+|
T Consensus        79 ~~~~~~~Vv~   88 (104)
T cd04594          79 NKTRWCPVVD   88 (104)
T ss_pred             cCcceEEEEE
Confidence            9999999998

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.16  E-value=2e-10  Score=97.75  Aligned_cols=85  Identities=19%  Similarity=0.230  Sum_probs=72.0

Q ss_pred             EeCCCCchHHHHHHHHHcC-----CcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHH
Q 010540          241 LDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN  315 (508)
Q Consensus       241 v~~~~tl~~eal~~~~~~~-----~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~  315 (508)
                      ++++.++. ++++.|.+++     +..+||++++ ++++|+++.+|++...  .+.++.++|..++.++++++++.++++
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~--~~~~v~~~~~~~~~~i~~~~~~~~~~~   77 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD--PDTPVSDIMDTDVISVSADDDQEEVAR   77 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC--CcchHHHHhCCCCeEEcCCCCHHHHHH
Confidence            46778888 9999988777     3678999765 7899999999998643  245688888788899999999999999


Q ss_pred             HHHhCCCeEEEEEe
Q 010540          316 EFQKGSSHMAAVVK  329 (508)
Q Consensus       316 ~m~~~~~~~a~VvD  329 (508)
                      .|.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~~Vv~   91 (109)
T cd04606          78 LFEKYDLLALPVVD   91 (109)
T ss_pred             HHHHcCCceeeeEC
Confidence            99999999999998

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.16  E-value=1.4e-10  Score=124.45  Aligned_cols=99  Identities=17%  Similarity=0.309  Sum_probs=84.4

Q ss_pred             HHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Cccc
Q 010540          217 ISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETP  292 (508)
Q Consensus       217 i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~  292 (508)
                      ..++  |...+|+++|.+  ++.++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++.....    ...+
T Consensus       328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~  401 (454)
T TIGR01137       328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDA  401 (454)
T ss_pred             HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCC
Confidence            4444  788999999987  788999999999 99999999999999999865 789999999999864322    2346


Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCC
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGS  321 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~  321 (508)
                      +.++|.+++.++++++++.++++.|.+++
T Consensus       402 v~~im~~~~~~v~~~~~l~~a~~~~~~~~  430 (454)
T TIGR01137       402 VSKVMSKKFIQIGEGEKLSDLSKFLEKNS  430 (454)
T ss_pred             HHHhcCCCCeEECCcCcHHHHHHHHHHCC
Confidence            88999888889999999999999998764

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.16  E-value=1.6e-10  Score=102.44  Aligned_cols=91  Identities=20%  Similarity=0.297  Sum_probs=78.4

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC--------------------------CCc
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP--------------------------ETE  290 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~--------------------------~~~  290 (508)
                      ++.+++++.++. ++++.|.++++.++||++++ ++++|+++.+|+.....                          ...
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           3 DVVTVSPETSVA-EAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCEEeCCCCCHH-HHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            667889999998 99999999999999999864 78999999999875321                          123


Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++.++|.+++.++++++++.++++.|.+.+.+.+||+|
T Consensus        81 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd  119 (135)
T cd04586          81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR  119 (135)
T ss_pred             CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec
Confidence            467888878889999999999999999999999999998

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.16  E-value=2.1e-10  Score=97.88  Aligned_cols=91  Identities=15%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccccceeecCCCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~v~~V~~~~~l~d  312 (508)
                      ++.+++++.++. ++++.+.+.+++++||++++ ++++|+++.+++.......    ..++.++|.+++.++++++++.+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~   80 (114)
T cd04604           3 ALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAE   80 (114)
T ss_pred             cccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHH
Confidence            455678899998 99999988889999999865 7899999999887654321    24688888888899999999999


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 010540          313 ILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       313 ~L~~m~~~~~~~a~VvD  329 (508)
                      +++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~Vv~   97 (114)
T cd04604          81 ALELMEENKITALPVVD   97 (114)
T ss_pred             HHHHHHHcCCCEEEEEC
Confidence            99999999999999998

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=2.6e-10  Score=97.82  Aligned_cols=90  Identities=12%  Similarity=0.307  Sum_probs=74.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcC-CcEEEEeeCCCCcEEEEeEHhHHhccCCC----CcccccccccccceeecCC--CC
Q 010540          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIPRVPSD--MP  309 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~-~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v~~V~~~--~~  309 (508)
                      ++..++.+.++. ++++.|.+++ ++.+||.++  ++++|+++.+|++....+    ...++.++|.+++.+++++  ++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~   78 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQD   78 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccC
Confidence            455788999998 9999998888 667777763  789999999999864322    1256888888888889887  78


Q ss_pred             HHHHHHHHHhCCCeEEEEEe
Q 010540          310 LYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       310 l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++++.|.+++.+.+||+|
T Consensus        79 l~~a~~~~~~~~~~~~pVvd   98 (115)
T cd04620          79 IFTALSLFRQHQIRHLPVLD   98 (115)
T ss_pred             HHHHHHHHHHhCCceEEEEc
Confidence            99999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=1.7e-10  Score=100.00  Aligned_cols=90  Identities=13%  Similarity=0.209  Sum_probs=77.5

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--------------Ccccccccccccce
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP  302 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--------------~~~~V~dim~~~v~  302 (508)
                      ++.+++++.++. ++++.+.+.+++++||+++  ++++|+++.+|+......              ...++.++|.++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04637           2 RVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPI   78 (122)
T ss_pred             CceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCe
Confidence            567889999998 9999999999999999985  789999999999753211              12457788888899


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~vv~  105 (122)
T cd04637          79 TVSPDTPVDEASKLLLENSISCLPVVD  105 (122)
T ss_pred             eeCCCCcHHHHHHHHHHcCCCeEeEEC
Confidence            999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.15  E-value=2.4e-10  Score=97.47  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=76.8

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC----CC-cccccccccccceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ET-ETPVSAVSIRRIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~----~~-~~~V~dim~~~v~~V~~~~~l~  311 (508)
                      ++.+++++.+++ ++++.|.+++.+.+||.++  ++++|+++.+|++....    .. ..++.++|.+++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~   78 (113)
T cd04587           2 KPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVL   78 (113)
T ss_pred             CCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHH
Confidence            566788999998 9999998889999999985  88999999999874221    11 1568888888888999999999


Q ss_pred             HHHHHHHhCCCeEEEEEec
Q 010540          312 DILNEFQKGSSHMAAVVKA  330 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvDe  330 (508)
                      ++++.|.+++.+.+||+|+
T Consensus        79 ~~~~~~~~~~~~~l~Vv~~   97 (113)
T cd04587          79 EALHLMVQGKFRHLPVVDK   97 (113)
T ss_pred             HHHHHHHHcCCCcccEECC
Confidence            9999999999988999983

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=5.8e-10  Score=94.29  Aligned_cols=89  Identities=18%  Similarity=0.246  Sum_probs=77.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNE  316 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~  316 (508)
                      ++++++.+.++. ++++.+.+.+++++||++++ ++++|+++.+++.....  ..++.++|.+++.++++++++.++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~~--~~~~~~~~~~~~~~v~~~~~l~~~~~~   77 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNPE--EEQLALLMTRDPPTVSPDDDVKEAAKL   77 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhccc--cchHHHHhcCCCceECCCCCHHHHHHH
Confidence            567888999998 99999998899999999876 78999999999985422  245777787888899999999999999


Q ss_pred             HHhCCCeEEEEEe
Q 010540          317 FQKGSSHMAAVVK  329 (508)
Q Consensus       317 m~~~~~~~a~VvD  329 (508)
                      |.+++.+.+||+|
T Consensus        78 ~~~~~~~~~~Vvd   90 (106)
T cd04638          78 MVENNIRRVPVVD   90 (106)
T ss_pred             HHHcCCCEEEEEE
Confidence            9999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=5.3e-10  Score=95.38  Aligned_cols=90  Identities=14%  Similarity=0.249  Sum_probs=76.6

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc-CC---CCc-ccccccccccceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV-RP---ETE-TPVSAVSIRRIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~-~~---~~~-~~V~dim~~~v~~V~~~~~l~  311 (508)
                      ++.++++++++. ++.+.|.+.+++.+||+++  ++++|+++.+|++.. ..   ... .++.++|.+.+.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   78 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD   78 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHH
Confidence            567889999998 9999999999999999986  899999999998632 11   111 248888888889999999999


Q ss_pred             HHHHHHHhCCCeEEEEEe
Q 010540          312 DILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.|++.+.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~~V~~   96 (113)
T cd04622          79 EAARLMREHQVRRLPVVD   96 (113)
T ss_pred             HHHHHHHHcCCCeeeEEC
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.13  E-value=2.9e-10  Score=96.83  Aligned_cols=86  Identities=15%  Similarity=0.152  Sum_probs=74.4

Q ss_pred             cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHH
Q 010540          236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDI  313 (508)
Q Consensus       236 ~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~  313 (508)
                      ++...++++.++. ++.+.+.+.+++++||+++.  .++++|+++.+|+......       +|.+++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-------~m~~~~~~v~~~~~l~~~   73 (105)
T cd04591           2 PLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-------YIDPSPFTVSPRTSLEKV   73 (105)
T ss_pred             CceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-------hccCCCceECCCCcHHHH
Confidence            3677889999998 99999999889999999862  3789999999999864321       677888899999999999


Q ss_pred             HHHHHhCCCeEEEEEe
Q 010540          314 LNEFQKGSSHMAAVVK  329 (508)
Q Consensus       314 L~~m~~~~~~~a~VvD  329 (508)
                      ++.|++++.+.+||++
T Consensus        74 ~~~~~~~~~~~~pVv~   89 (105)
T cd04591          74 HQLFRKLGLRHLLVVD   89 (105)
T ss_pred             HHHHHHcCCCEEEEEE
Confidence            9999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=6.7e-10  Score=94.67  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=77.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-----CCcccccccccccceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRRIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-----~~~~~V~dim~~~v~~V~~~~~l~  311 (508)
                      ++.++++++++. ++++.|.+++++.+||+++  ++++|+++.+|++....     ....++.++|.+++.++++++++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   78 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLN   78 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHH
Confidence            456788999998 9999999999999999986  48999999999986431     123468888888888999999999


Q ss_pred             HHHHHHHhCCCeEEEEEe
Q 010540          312 DILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~~~~~~~~~~~~~~~Vv~   96 (112)
T cd04802          79 EAAKLMAKHGIKRLPVVD   96 (112)
T ss_pred             HHHHHHHHcCCCeeEEee
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.11  E-value=4.6e-10  Score=120.17  Aligned_cols=117  Identities=18%  Similarity=0.225  Sum_probs=103.0

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccccccee
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR  303 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~  303 (508)
                      ...++.++|++  +++++++++++. ++++.|.+++++.+||+++  ++++|+|+.+|+....  ...+++++|.+++++
T Consensus        86 ~~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~~--~~~~V~dIMt~~lit  158 (475)
T TIGR01303        86 AFVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGVD--RFTQVRDIMSTDLVT  158 (475)
T ss_pred             hhcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcCC--CCCCHHHHccCCceE
Confidence            35678889986  778999999999 9999999999999999875  5899999999997543  235799999999999


Q ss_pred             ecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccc
Q 010540          304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLN  349 (508)
Q Consensus       304 V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i  349 (508)
                      +++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++..
T Consensus       159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGII--T~~DLl~~~  202 (475)
T TIGR01303       159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGIL--TRTGALRAT  202 (475)
T ss_pred             eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE--EHHHHHHHH
Confidence            99999999999999999999999999999999999  999988544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=4.9e-10  Score=96.89  Aligned_cols=90  Identities=19%  Similarity=0.326  Sum_probs=77.6

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--------------Ccccccccccccce
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TETPVSAVSIRRIP  302 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--------------~~~~V~dim~~~v~  302 (508)
                      ++..+++++++. ++++.+.+.+++++||+++  ++++|+++.+|+......              ...++.++|.+++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI   78 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCce
Confidence            456788999998 9999998889999999985  899999999999864321              13467788888899


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++++++.++++.|.+.+.+.+||+|
T Consensus        79 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~  105 (121)
T cd04633          79 TIEPDTSVSDVASLMLENNIGGLPVVD  105 (121)
T ss_pred             EECCCCcHHHHHHHHHHcCCCcccEEE
Confidence            999999999999999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.10  E-value=5.9e-10  Score=96.25  Aligned_cols=91  Identities=13%  Similarity=0.205  Sum_probs=78.0

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-------------CCccccccccccccee
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-------------ETETPVSAVSIRRIPR  303 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-------------~~~~~V~dim~~~v~~  303 (508)
                      ++.+++.++++. ++++.+.+.+++++||++++ ++++|+++.+|+.....             ....++.++|..++.+
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVIT   79 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeE
Confidence            456788999998 99999998999999999875 89999999999875421             1225678888888999


Q ss_pred             ecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          304 VPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       304 V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++++.++++.|.+++.+.+||+|
T Consensus        80 i~~~~~l~~~~~~~~~~~~~~~~V~~  105 (121)
T cd04584          80 VHPLDTVEEAALLMREHRIGCLPVVE  105 (121)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEee
Confidence            99999999999999999999999998

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.10  E-value=2.3e-10  Score=114.12  Aligned_cols=110  Identities=12%  Similarity=0.095  Sum_probs=97.1

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---Ccccccccccccce
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIP  302 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~  302 (508)
                      .+|+++|.+. ++..+++++++. ++++.|.+.+++.+||++++ ++++|+++.+|+......   .+.+++++|.+++.
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGSLKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCcccCcHHHhCCCCCe
Confidence            6899999872 277899999998 99999998999999999865 789999999999865322   24679999989999


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv  338 (508)
                      ++++++++.++++.|.+++.+.+||+|+.|+++|++
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI  267 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL  267 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEE
Confidence            999999999999999999999999999999999998

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.09  E-value=6.6e-10  Score=94.02  Aligned_cols=88  Identities=23%  Similarity=0.366  Sum_probs=73.0

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----cccccccccccceeecCCCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRRIPRVPSDMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~v~~V~~~~~l~d  312 (508)
                      ++.+++.++++. ++++.|.+++++++||+++  ++++|+++.+|+.+.....    ..++.++|.+++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   78 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEE   78 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHH
Confidence            456788999998 9999999999999999986  7899999999998754321    24678888788889999999999


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 010540          313 ILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       313 ~L~~m~~~~~~~a~VvD  329 (508)
                      +++.|++ +.+ +||+|
T Consensus        79 ~~~~~~~-~~~-~~vv~   93 (110)
T cd04609          79 LSELLDR-GNV-AVVVD   93 (110)
T ss_pred             HHHHHHh-CCc-eeEEe
Confidence            9999988 333 67888

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=9.2e-10  Score=93.82  Aligned_cols=90  Identities=14%  Similarity=0.229  Sum_probs=75.6

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----CcccccccccccceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRRIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~V~dim~~~v~~V~~~~~l~  311 (508)
                      ++.++++++++. ++++.+.+++++.++|.+ + ++++|+++.+|+.+...+     ...++.++|..++.++++++++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   78 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSID   78 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHH
Confidence            567889999998 999999888887777765 3 789999999999864321     13568888878888999999999


Q ss_pred             HHHHHHHhCCCeEEEEEe
Q 010540          312 DILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.|.+++.+.+||+|
T Consensus        79 ~a~~~m~~~~~~~l~Vv~   96 (112)
T cd04625          79 EVRRLMVERHLRYLPVLD   96 (112)
T ss_pred             HHHHHHHHcCCCeeeEEE
Confidence            999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=9.7e-10  Score=98.87  Aligned_cols=90  Identities=13%  Similarity=0.262  Sum_probs=77.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----------------------------
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------------------  288 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----------------------------  288 (508)
                      ++++++++.++. ++++.|.+.+++.+||+++  ++++|+++.+|++.....                            
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
T cd04634           2 NPITCNADDTIS-DAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEE   78 (143)
T ss_pred             CcEEecCCCCHH-HHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHH
Confidence            567899999998 9999999999999999985  789999999998754211                            


Q ss_pred             --------CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          289 --------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       289 --------~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                              ...++.++|.+++.++++++++.++++.|++.+.+.+||++
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~  127 (143)
T cd04634          79 TKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE  127 (143)
T ss_pred             HHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence                    12356777888899999999999999999999999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.06  E-value=1.6e-09  Score=92.92  Aligned_cols=96  Identities=21%  Similarity=0.354  Sum_probs=83.5

Q ss_pred             ccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc-c--cccccccccceeec
Q 010540          229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-T--PVSAVSIRRIPRVP  305 (508)
Q Consensus       229 ~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~-~--~V~dim~~~v~~V~  305 (508)
                      .++|.  .+++++.++.++. ++...|.+++++.+||.++  ++++|+++.+|+..+..... .  ++.++|.+++.++.
T Consensus         2 ~~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~~~~~~~   76 (117)
T COG0517           2 KDIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLLPVKEVMTKPVVTVD   76 (117)
T ss_pred             ccccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccccHHHhccCCcEEEC
Confidence            34555  3888999999999 9999999999999999975  37999999999998765433 2  48899888999999


Q ss_pred             CCCCHHHHHHHHHh-CCCeEEEEEe
Q 010540          306 SDMPLYDILNEFQK-GSSHMAAVVK  329 (508)
Q Consensus       306 ~~~~l~d~L~~m~~-~~~~~a~VvD  329 (508)
                      ++.++.++++.|.+ ++.+.+||+|
T Consensus        77 ~~~~~~~~~~~m~~~~~~~~lpVv~  101 (117)
T COG0517          77 PDTPLEEALELMVERHKIRRLPVVD  101 (117)
T ss_pred             CCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            99999999999999 7999999999

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=1.9e-09  Score=90.56  Aligned_cols=91  Identities=21%  Similarity=0.319  Sum_probs=77.2

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc----ccccccccccceeecCCCCHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE----TPVSAVSIRRIPRVPSDMPLYD  312 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~----~~V~dim~~~v~~V~~~~~l~d  312 (508)
                      ++.+++.+.++. ++++.+.+.+++++||++++ ++++|+++.+|+........    ..+.++|..++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHH
Confidence            456788999998 99999998899999999875 79999999999986543221    1155677888999999999999


Q ss_pred             HHHHHHhCCCeEEEEEe
Q 010540          313 ILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       313 ~L~~m~~~~~~~a~VvD  329 (508)
                      +++.|.+.+.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~V~~   96 (113)
T cd02205          80 AAELMLEHGIRRLPVVD   96 (113)
T ss_pred             HHHHHHHcCCCEEEEEc
Confidence            99999999999999999

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.03  E-value=1.3e-09  Score=93.92  Aligned_cols=90  Identities=17%  Similarity=0.225  Sum_probs=73.3

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcC-CcEEEEeeCCCCcEEEEeEHhHHhccCCC-------CcccccccccccceeecCCC
Q 010540          237 STFSLDVNSKLDWEAMGKILARG-HSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------TETPVSAVSIRRIPRVPSDM  308 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~-~sr~PV~~~~~d~ivGiv~~kDll~~~~~-------~~~~V~dim~~~v~~V~~~~  308 (508)
                      ++.++++++++. ++++.+.+.+ ++.+||+++  ++++|+++.+|+......       ...++.++|..++..+++++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   78 (119)
T cd04598           2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADT   78 (119)
T ss_pred             CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCC
Confidence            345678999998 9999998877 899999987  899999999999854322       23568899888899999999


Q ss_pred             CHHHHHHHHHhCCCe---EEEEEe
Q 010540          309 PLYDILNEFQKGSSH---MAAVVK  329 (508)
Q Consensus       309 ~l~d~L~~m~~~~~~---~a~VvD  329 (508)
                      ++.++++.|.+++.+   ..+|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vv~  102 (119)
T cd04598          79 PLEEVSRLATGRDSQNLYDGFIVT  102 (119)
T ss_pred             CHHHHHHHHHcCCcccccccEEEe
Confidence            999999999888643   345777

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.98  E-value=1e-09  Score=115.49  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=95.5

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC----CCccccccccccc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSIRR  300 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~----~~~~~V~dim~~~  300 (508)
                      -.+|+++|+.  +.+++++.+++. ++.+.|.++|.+.+.+.+++ +...||++.+|+.....    ....+|+++|+.|
T Consensus       148 ~trv~~~~~~--~~~~v~~~~~i~-~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p  223 (610)
T COG2905         148 LTRVGEVKTL--PAVTVSPQASIQ-DAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSP  223 (610)
T ss_pred             HHHHHHHhcC--CCcccCccCcHH-HHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhccC
Confidence            3468888886  778899999999 99999999999988888766 88999999999986532    2347899999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcc
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll  346 (508)
                      +.+|..++.+.+|+-.|.+++++.+||.+ .|++.||+  |..|++
T Consensus       224 ~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gil--t~~dIl  266 (610)
T COG2905         224 VISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGIL--TLTDIL  266 (610)
T ss_pred             ceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEe--eHHHHH
Confidence            99999999999999999999999999985 34455555  444444

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.93  E-value=5.6e-09  Score=110.42  Aligned_cols=92  Identities=11%  Similarity=-0.013  Sum_probs=76.0

Q ss_pred             ccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       291 ~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                      .+|+++|++  ++.+++.+++++++++.|.+++....||+++. ++++|++  |.||++....+    +.     ..+.+
T Consensus       191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv--~~kDll~~~~~----~~-----~~l~~  259 (408)
T TIGR03520       191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVL--YIKDLLPHLNK----KN-----FDWQS  259 (408)
T ss_pred             CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEE--EHHHHHhHhcc----CC-----CCHHH
Confidence            459999984  78999999999999999999999999999764 7899999  99999864432    11     12345


Q ss_pred             ccCCceeecCCCCCccchhhhhcccC
Q 010540          368 EKTESVVVDVDRPLSSGSMNRLSSSQ  393 (508)
Q Consensus       368 ~~~~~~~V~~~~~l~~~~~~~~~~~~  393 (508)
                      ..+++++||+++++.++++.|+.++.
T Consensus       260 ~~~~~~~Vpe~~~l~~ll~~m~~~~~  285 (408)
T TIGR03520       260 LLREPYFVPENKKLDDLLRDFQEKKN  285 (408)
T ss_pred             HcCCCeEeCCCCcHHHHHHHHHhcCc
Confidence            56789999999999999999999843

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.85  E-value=1e-08  Score=91.48  Aligned_cols=94  Identities=19%  Similarity=0.159  Sum_probs=77.6

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc---c------------ccccc----
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---P------------VSAVS----  297 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~---~------------V~dim----  297 (508)
                      ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++++......   .            +.++|    
T Consensus         2 ~~~~v~~~~~l~-ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLK-EALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            677899999999 99999999999999999875 789999999999865432111   1            23354    


Q ss_pred             -----cccceeecCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 010540          298 -----IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (508)
Q Consensus       298 -----~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g  332 (508)
                           .+++.++++++++.++++.|.+++.+.+||+|+.+
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence                 36788999999999999999999999999999644

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK11573 hypothetical protein; Provisional

Probab=98.84  E-value=1.8e-08  Score=106.58  Aligned_cols=128  Identities=13%  Similarity=0.128  Sum_probs=89.5

Q ss_pred             HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (508)
Q Consensus       250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~V  327 (508)
                      |.++.+.+.+..  .+-+++.+.+-|++..+|         .+++++|+  .++.+++.+++++++++.+.+++..+.||
T Consensus       157 eEl~~lv~~~~~--~l~~~e~~mi~~vl~l~~---------~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PV  225 (413)
T PRK11573        157 EELRTIVHESRS--QISRRNQDMLLSVLDLEK---------VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVL  225 (413)
T ss_pred             HHHHHHHHHHhh--hcCHHHHHHHHHHhccCC---------CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEE
Confidence            455555554433  122223344555555544         45899997  67889999999999999999887777777


Q ss_pred             Eec-CCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCC
Q 010540          328 VKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRS  395 (508)
Q Consensus       328 vDe-~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~  395 (508)
                      +++ .++++|++  |.||++.........     +...+.+..+++++||+++++.++++.|++++.|+
T Consensus       226 y~~~~D~IiGiv--~~kDll~~~~~~~~~-----~~~~l~~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~  287 (413)
T PRK11573        226 YRDSLDDAISML--RVREAYRLMTEKKEF-----TKENMLRAADEIYFVPEGTPLSTQLVKFQRNKKKV  287 (413)
T ss_pred             EcCCCCceEEEE--EHHHHHHHhhccCcC-----CHHHHHhhccCCeEeCCCCcHHHHHHHHHhcCCeE
Confidence            655 58899999  999998644321110     01123355678999999999999999999995443

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.76  E-value=4.7e-08  Score=107.50  Aligned_cols=117  Identities=16%  Similarity=0.187  Sum_probs=97.0

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----------------
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------  288 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----------------  288 (508)
                      ..+|+++|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+.....+                
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            3689999987  888999999999 99999999999999999875 789999999998642100                


Q ss_pred             --------------------------------------------------------------------------------
Q 010540          289 --------------------------------------------------------------------------------  288 (508)
Q Consensus       289 --------------------------------------------------------------------------------  288 (508)
                                                                                                      
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~  222 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK  222 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------Cccccccccc-ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcc
Q 010540          289 ---------------------TETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (508)
Q Consensus       289 ---------------------~~~~V~dim~-~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll  346 (508)
                                           ...+|+++|. +++.++++++++.++.+.|.+++.+.+||+|+.|+++|++  |.+|++
T Consensus       223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGii--t~~dl~  300 (546)
T PRK14869        223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVI--SRYHLL  300 (546)
T ss_pred             hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEE--EHHHhh
Confidence                                 0124667777 7788899999999999999888888889999888888888  777776


Q ss_pred             c
Q 010540          347 K  347 (508)
Q Consensus       347 ~  347 (508)
                      +
T Consensus       301 ~  301 (546)
T PRK14869        301 S  301 (546)
T ss_pred             c
Confidence            4

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.71  E-value=1.6e-07  Score=100.09  Aligned_cols=195  Identities=9%  Similarity=0.042  Sum_probs=124.3

Q ss_pred             hhhcchhhHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCcccccHHHHHHHHHHhhhhhccCCCCChhH
Q 010540          134 FGEVIPQAICTRYGLAVGANFVWLVRILMIICYPIAYPIGKILDWVLGHNEALFRRAQLKALVTIHSQEAGKGGELTHDE  213 (508)
Q Consensus       134 fgEiiPK~la~~~~~~ia~~~a~~~~~~~~l~~Pl~~~~~~~~~~l~g~~~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E  213 (508)
                      +.-++..-+-...+.+.+..++.........++.+.||+.+++++..         +-+..+...         ... ++
T Consensus       107 l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a---------~~il~l~~~---------~~~-~~  167 (429)
T COG1253         107 LHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIA---------NAILRLFGV---------EPV-EE  167 (429)
T ss_pred             hhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHcCC---------CCC-Cc
Confidence            33444455555666666667777777777888888888888877642         112222110         000 00


Q ss_pred             HHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccc
Q 010540          214 TTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPV  293 (508)
Q Consensus       214 ~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V  293 (508)
                      .                      +      ..... +..+ +...++...-+-.++...+-|++.+.+         .++
T Consensus       168 ~----------------------~------~~~~~-~~~~-~~~~~~~~g~~~~~E~~mi~~v~~l~~---------~~v  208 (429)
T COG1253         168 E----------------------A------LTSTE-EELE-LVSESAEEGVLEEEEREMINNVLDLDD---------RTV  208 (429)
T ss_pred             c----------------------c------cCccH-HHHH-HHHhHHhcCCcCHHHHHHHHHHhccCC---------cEe
Confidence            0                      0      00001 2222 343333333333333344556665554         458


Q ss_pred             ccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEe-cCCCccccCCCCCCCccccccccCCCCCCcccccccccccC
Q 010540          294 SAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKT  370 (508)
Q Consensus       294 ~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD-e~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~  370 (508)
                      +++|+  .++.+++.+.+.+++.+.+.+++..+.||++ +.++++|++  |.||++........ ..      ......+
T Consensus       209 ~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv--~~Kdll~~~~~~~~-~~------~~~~~~~  279 (429)
T COG1253         209 REIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIV--HVKDLLRALLDGQS-DL------DLRVLVR  279 (429)
T ss_pred             eeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEE--EHHHHHHHHhcCcc-cc------chhhccc
Confidence            99997  6788999999999999999888878888888 788899999  99999987765543 11      0112233


Q ss_pred             CceeecCCCCCccchhhhhcccCCC
Q 010540          371 ESVVVDVDRPLSSGSMNRLSSSQRS  395 (508)
Q Consensus       371 ~~~~V~~~~~l~~~~~~~~~~~~~~  395 (508)
                      ++++||+++++.++++.|++.+.|+
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hm  304 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHM  304 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeE
Confidence            7999999999999999999985443

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.63  E-value=6e-08  Score=72.90  Aligned_cols=37  Identities=22%  Similarity=0.172  Sum_probs=34.9

Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      |+++|.++++++++++++.++++.|++++.+.+||+|
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d   37 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD   37 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe
Confidence            4678889999999999999999999999999999999

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.60  E-value=4e-09  Score=99.91  Aligned_cols=128  Identities=11%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc--ccceeecCCCCHHHHHHHHHhC-CCeEEE
Q 010540          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKG-SSHMAA  326 (508)
Q Consensus       250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~-~~~~a~  326 (508)
                      |.+..+++.....+ +-.+..+++-|++...|+.         |+|+|+  .++.+++.+.++.+.+..+.+. |+++++
T Consensus        36 eLl~liRdse~n~L-iD~dt~~mlEGvm~iadl~---------vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPV  105 (293)
T COG4535          36 ELLELIRDSEQNEL-IDADTLDMLEGVMDIADLR---------VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPV  105 (293)
T ss_pred             HHHHHHHHhhhccc-cChhHHHHHHHHHHHHHhh---------HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCc
Confidence            66676666554443 4445567889999988876         899997  5788999999999999999766 777777


Q ss_pred             EEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCC
Q 010540          327 VVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSD  396 (508)
Q Consensus       327 VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~  396 (508)
                      +-++.+++.||+  ++||||..+......-       .+....++++||||+++++-+++.|+.++.|||
T Consensus       106 i~edkD~v~GIL--~AKDLL~~~~~~~~~F-------~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMA  166 (293)
T COG4535         106 ISEDKDHVEGIL--LAKDLLPFMRSDAEPF-------DIKELLRPAVVVPESKRVDRLLKEFRSQRNHMA  166 (293)
T ss_pred             ccCCchhhhhhh--hHHHHHHHhcCCcccc-------cHHHhcccceecccchhHHHHHHHHHhhcCceE
Confidence            777788999999  9999998765332211       234455669999999999999999999987763

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=9.1e-08  Score=80.48  Aligned_cols=94  Identities=12%  Similarity=0.138  Sum_probs=76.4

Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCC
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD  378 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~  378 (508)
                      ++.++++++++.++.+.|.+++.+.+||+|+. |..+|++  |.+|+.+...                     ...+.++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Giv--t~~Dl~~~~~---------------------~~~v~~~   58 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGML--TITDFILILR---------------------LVSIHPE   58 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEE--EHHHHhhhee---------------------eEEeCCC
Confidence            45789999999999999999999999999985 7899999  8888865331                     5678899


Q ss_pred             CCCccchhhhhcccCCCCcccccccccccccCC-CceEEeechHHHHH
Q 010540          379 RPLSSGSMNRLSSSQRSDSTTNGLIYASEDIED-GEVIGIITLEDVFE  425 (508)
Q Consensus       379 ~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~-G~lvGIVTleDIle  425 (508)
                      .++.+..+.|..+..+.-.+++         ++ |+++|+||..|++.
T Consensus        59 ~~l~~a~~~m~~~~~~~lpVvd---------~~~~~~~giit~~d~~~   97 (98)
T cd04618          59 RSLFDAALLLLKNKIHRLPVID---------PSTGTGLYILTSRRILK   97 (98)
T ss_pred             CcHHHHHHHHHHCCCCEeeEEE---------CCCCCceEEeehhhhhc
Confidence            9999999999887554422223         44 89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.48  E-value=3.5e-07  Score=95.61  Aligned_cols=182  Identities=18%  Similarity=0.200  Sum_probs=136.2

Q ss_pred             cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----------cccccccc---cccce
Q 010540          236 ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----------ETPVSAVS---IRRIP  302 (508)
Q Consensus       236 ~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----------~~~V~dim---~~~v~  302 (508)
                      ...+++.+..++- ++...+.++++.|+||.+.+.++++.+++.+-+++.....          ..++.|.-   ...+.
T Consensus       162 ~~~~~i~p~~s~l-~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~  240 (381)
T KOG1764|consen  162 PPFVSISPESSLL-DAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIA  240 (381)
T ss_pred             CCceeecCcHHHH-HHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhhe
Confidence            3447888888876 8888899999999999985557999999999998754221          11222221   24578


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCC-CCc---ccccccccccCCceeecCC
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDC-DLT---APLLSKQDEKTESVVVDVD  378 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~-~l~---~p~~~i~~~~~~~~~V~~~  378 (508)
                      ++.+++++.++++.|..++..-+||||++|+.+|+.  ...|+........... ..+   ...........+.+....+
T Consensus       241 ~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~--s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~  318 (381)
T KOG1764|consen  241 SISEDTPVIEALKIMSERRISALPVVDENGKKVGNY--SRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPT  318 (381)
T ss_pred             eecCCCcHHHHHHHHHhcCcCcceEEcCCCceecce--ehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEeec
Confidence            899999999999999999999999999999999999  7777775554333321 111   1111222334456788889


Q ss_pred             CCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          379 RPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       379 ~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ..++.....+...+.|.     ..+||    ++|.++|+||+.||+..++-
T Consensus       319 ssL~~vi~~lv~~~vHR-----l~VVd----~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  319 STLAEVIDKLVAHRVHR-----LWVVD----EDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             chHHHHHHHHHhcCceE-----EEEEc----CCCcEEEEeeHHHHHHHHHh
Confidence            99999999998885555     44444    78999999999999999986

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.45  E-value=1.4e-07  Score=80.71  Aligned_cols=112  Identities=19%  Similarity=0.274  Sum_probs=81.1

Q ss_pred             ccceeecCCCCHHHHHHHHHhCC-CeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecC
Q 010540          299 RRIPRVPSDMPLYDILNEFQKGS-SHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDV  377 (508)
Q Consensus       299 ~~v~~V~~~~~l~d~L~~m~~~~-~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~  377 (508)
                      +++.++++++++.++++.|.+++ .+.+||+|+.|+.+|++  +.+|++....+....    .+..++.........++.
T Consensus         1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v--~~~dl~~~~~~~~~~----~~v~~~~~~~~~~~~v~~   74 (114)
T cd04801           1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGII--SLADLRAIPTSQWAQ----TTVIQVMTPAAKLVTVLS   74 (114)
T ss_pred             CCcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEE--EHHHHHHHHHhhccc----cchhhhhcccccceEECC
Confidence            35678999999999999997664 78899999999999999  999988755422111    111122222223457888


Q ss_pred             CCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHH
Q 010540          378 DRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFE  425 (508)
Q Consensus       378 ~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIle  425 (508)
                      +.++.+..+.|..+..+...++     +    ++|.++|++|..||++
T Consensus        75 ~~~l~~a~~~~~~~~~~~l~Vv-----~----~~~~~~Gvl~~~di~~  113 (114)
T cd04801          75 EESLAEVLKLLEEQGLDELAVV-----E----DSGQVIGLITEADLLR  113 (114)
T ss_pred             CCcHHHHHHHHHHCCCCeeEEE-----c----CCCcEEEEEeccceec
Confidence            9999999999988754433333     3    5689999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.45  E-value=3e-07  Score=69.03  Aligned_cols=54  Identities=26%  Similarity=0.508  Sum_probs=50.2

Q ss_pred             cccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       228 V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      |+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhh
Confidence            5789998  899999999999 99999999999999999876 899999999999864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=8.8e-06  Score=85.83  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             cccccccccccc-eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceee
Q 010540          226 KTAEEAMTPIES-TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV  304 (508)
Q Consensus       226 ~~V~dIMtpr~~-vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V  304 (508)
                      .++.++|.+... .+...++.+.. ++++.|.+.+.+...|++++ ++++|+++.+++...... ...+.+.+.....+|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  350 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPR-SALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ-QQGLDAALIDAPLAV  350 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHH-HHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc-CCchhhhhccCCcee
Confidence            577888854221 12333555666 89999999999999999876 799999999999765433 345777777778899


Q ss_pred             cCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          305 PSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       305 ~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++++.+++..|.+.... +||+|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~-~~v~~  374 (400)
T PRK10070        351 DAQTPLSELLSHVGQAPCA-VPVVD  374 (400)
T ss_pred             CCCCCHHHHHHHHHhCCCc-EEEEC
Confidence            9999999999999987766 88888

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.11  E-value=3.1e-07  Score=92.88  Aligned_cols=124  Identities=9%  Similarity=0.092  Sum_probs=90.0

Q ss_pred             HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (508)
Q Consensus       250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~V  327 (508)
                      +.++.+.+.+.....+-.++...+.|++.+.+         .+|+++|+.  ++.++++++++.++++.+.+++.+..||
T Consensus        35 eEl~~l~~~~~~~g~l~~~e~~~i~~vl~l~~---------~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV  105 (292)
T PRK15094         35 DELLALIRDSEQNDLIDEDTRDMLEGVMDIAD---------QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPV  105 (292)
T ss_pred             HHHHHHHHhHhhcCCCCHHHHHHHHHHhccCC---------CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEE
Confidence            66777776554333333333334444444433         559999975  6899999999999999999999888999


Q ss_pred             EecC-CCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcc
Q 010540          328 VKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSS  391 (508)
Q Consensus       328 vDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~  391 (508)
                      +++. ++++|++  |.||++........ .      ..+.+..++++++++++++.++++.|+.+
T Consensus       106 ~~~~~d~iiGiv--~~kDll~~~~~~~~-~------~~l~~l~r~~~~V~e~~~l~~~L~~m~~~  161 (292)
T PRK15094        106 ISEDKDHIEGIL--MAKDLLPFMRSDAE-A------FSMDKVLRQAVVVPESKRVDRMLKEFRSQ  161 (292)
T ss_pred             ecCCCCcEEEEE--EHHHHHhHhhccCC-c------CCHHHHcCCCcCcCCCCcHHHHHHHHHhc
Confidence            9875 7899999  99999854321110 0      12345567788999999999999999988

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.10  E-value=2.3e-05  Score=81.67  Aligned_cols=86  Identities=16%  Similarity=0.195  Sum_probs=70.8

Q ss_pred             EEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHh
Q 010540          240 SLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQK  319 (508)
Q Consensus       240 ~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~  319 (508)
                      ...++.+.. ++++.+...+.....|++++ +++.|.++.+++..+.... ..+.+.|.....++++++++.+++..|.+
T Consensus       254 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (363)
T TIGR01186       254 TKTADKGPR-SALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-QGLQDVLIDDIYTVDAGTLLRETVRKVLK  330 (363)
T ss_pred             eecCCCCHH-HHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-CchhhhhccCCceECCCCcHHHHHHHHHh
Confidence            445566666 88899998888888888865 7899999999988654432 34777777888899999999999999999


Q ss_pred             CCCeEEEEEe
Q 010540          320 GSSHMAAVVK  329 (508)
Q Consensus       320 ~~~~~a~VvD  329 (508)
                      ++.. +||+|
T Consensus       331 ~~~~-~~v~~  339 (363)
T TIGR01186       331 AGIK-VPVVD  339 (363)
T ss_pred             CCCC-EEEEC
Confidence            9888 88998

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.08  E-value=4.7e-06  Score=85.04  Aligned_cols=154  Identities=11%  Similarity=0.121  Sum_probs=115.3

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCC-CChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEE
Q 010540          185 ALFRRAQLKALVTIHSQEAGKGGE-LTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV  263 (508)
Q Consensus       185 ~~~s~eEL~~lv~~~~~e~~~~g~-l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~  263 (508)
                      ..+++.|.-..+.+.+.-+--... =++++..+++++-.|..--+   +    +.+.+.++.++. ++++.-..++++.+
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~---~----~p~v~sp~~tvg-~v~~~k~~~gF~g~  142 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFI---N----NPIVISPTTTVG-EVKEAKEKHGFSGI  142 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcccc---c----CCcccCCcccch-hhhhhccccccccc
Confidence            356666655555433211000011 14566777888877765332   3    445678999998 99998889999999


Q ss_pred             EEeeCC--CCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCC
Q 010540          264 PVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMT  341 (508)
Q Consensus       264 PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t  341 (508)
                      ||.++.  ..+++|+|+.+|+-.. .+....+.++|+...++.|...+++++=+.+++.+-...||||+.|+++.++  +
T Consensus       143 pvTe~g~~~~KLvG~vtsrdi~f~-~~~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~--~  219 (503)
T KOG2550|consen  143 PVTEDGKRGSKLVGIITSRDIQFL-EDNSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAML--S  219 (503)
T ss_pred             ccccCCcccceeEEEEehhhhhhh-hcccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeee--e
Confidence            999632  3689999999998754 4455789999998779999999999999999999999999999999999999  8


Q ss_pred             CCCccccc
Q 010540          342 DGKKPKLN  349 (508)
Q Consensus       342 ~kDll~~i  349 (508)
                      ..|+.+..
T Consensus       220 rtDl~k~~  227 (503)
T KOG2550|consen  220 RTDLMKNR  227 (503)
T ss_pred             hhhhhhhc
Confidence            88887543

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.93  E-value=1.6e-05  Score=83.30  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=92.2

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc-----c-ccccc------cccceee
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET-----P-VSAVS------IRRIPRV  304 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~-----~-V~dim------~~~v~~V  304 (508)
                      ++..+..++++. ++++.|...+++.+||++.+ ++.+|..+..|+.....+...     . ++..-      ..+++++
T Consensus       238 ~i~~i~~~~~v~-~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc  315 (381)
T KOG1764|consen  238 NIASISEDTPVI-EALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTC  315 (381)
T ss_pred             hheeecCCCcHH-HHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEE
Confidence            588899999998 99999999999999999987 666999999999865444321     1 22221      1456789


Q ss_pred             cCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcccccc
Q 010540          305 PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (508)
Q Consensus       305 ~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~  350 (508)
                      .++.++.+++..|..++.|.+.|||+.|.++|++  +..|++..+.
T Consensus       316 ~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~Gvv--SLsDil~~l~  359 (381)
T KOG1764|consen  316 RPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVI--SLSDILSYLV  359 (381)
T ss_pred             eecchHHHHHHHHHhcCceEEEEEcCCCcEEEEe--eHHHHHHHHH
Confidence            9999999999999999999999999999999999  9999987765

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.84  E-value=1.5e-05  Score=79.33  Aligned_cols=113  Identities=15%  Similarity=0.123  Sum_probs=84.2

Q ss_pred             cccccccccc-ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccccc
Q 010540          291 TPVSAVSIRR-IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK  369 (508)
Q Consensus       291 ~~V~dim~~~-v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~  369 (508)
                      .+|+++|.++ ++.+++++++.++++.|.+.+.+.++|+|+.|+.+|++  +.+|+.+.......   ...|..++  +.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Giv--t~~dl~~~~~~~~~---~~~~v~~i--m~  227 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVF--TDGDLRRALLGGGS---LKSEVRDF--MT  227 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEE--EcHHHHHHHhcCCc---ccCcHHHh--CC
Confidence            3588998888 88999999999999999988889999999999999999  99999865432111   11121122  23


Q ss_pred             CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeec
Q 010540          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIIT  419 (508)
Q Consensus       370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVT  419 (508)
                      .....++++.++.+..+.|........-++     +    ++|+++|+|+
T Consensus       228 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-----d----~~g~l~GvI~  268 (268)
T TIGR00393       228 LGPKTFKLDALLLEALEFLERRKITSLVVV-----D----DHNKVLGVLH  268 (268)
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCcEEEEE-----C----CCCeEEEEEC
Confidence            345679999999999999988754432223     3    5789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.79  E-value=1.5e-05  Score=85.29  Aligned_cols=122  Identities=20%  Similarity=0.242  Sum_probs=97.8

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCC----cEEEEeEHhHHhccCC------C----
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK----NIIGLLLVKSLLTVRP------E----  288 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d----~ivGiv~~kDll~~~~------~----  288 (508)
                      +++++++|+|.+  ++++++.-+.+. ...+.++.+.|..+||+|+..+    .+.|++-.+.++....      +    
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            367789999998  999999999998 8889999999999999986443    6788887777653110      0    


Q ss_pred             ----------------Cc----------------ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540          289 ----------------TE----------------TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (508)
Q Consensus       289 ----------------~~----------------~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G  336 (508)
                                      ..                .++..+|-..+++|++++++..++..|++-+.+...|++...+++|
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~g  735 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVG  735 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeE
Confidence                            00                1234444566788999999999999999999999999999999999


Q ss_pred             cCCCCCCCccccc
Q 010540          337 LPPMTDGKKPKLN  349 (508)
Q Consensus       337 iv~~t~kDll~~i  349 (508)
                      ++  |.||+....
T Consensus       736 il--TR~D~~~~~  746 (762)
T KOG0474|consen  736 IL--TRKDLARYR  746 (762)
T ss_pred             EE--ehhhhhhHH
Confidence            99  999998433

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.69  E-value=2.1e-05  Score=84.51  Aligned_cols=101  Identities=16%  Similarity=0.141  Sum_probs=82.4

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccce
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~  302 (508)
                      -++.+++++|+|  +++++++++++. ++++.|.++++..+||+|++ ++++|+++.+|++....+.  ..+++|.....
T Consensus       192 ~~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~--~~ed~~~~~gv  265 (449)
T TIGR00400       192 KPEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE--ATEDFYMIAAV  265 (449)
T ss_pred             CCCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh--hHHHHHHhcCC
Confidence            356789999987  788899999998 99999999999999999875 7899999999999765432  24677665555


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +..+++.+.+.+..|.+++....+|.-
T Consensus       266 ~~~~~~~l~~~~~~~~~~R~~wL~v~~  292 (449)
T TIGR00400       266 KPLDDSYFDTSILVMAKNRIIWLLVLL  292 (449)
T ss_pred             CCCcchhhhchHHHHHHhccchHHHHH
Confidence            444677889999999999988888763

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.57  E-value=0.00013  Score=62.10  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=49.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .++.++|.+  ++.++.+++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        56 ~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             cChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            468899975  677899999998 99999999999999999875 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.51  E-value=6.1e-05  Score=82.98  Aligned_cols=118  Identities=11%  Similarity=0.111  Sum_probs=89.0

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---------------
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------------  288 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------------  288 (508)
                      ...+|+++|+. .++.+++++++++ ++.+.|.+++++.+||++++ ++++|+++.+|++.....               
T Consensus       244 ~~~~V~~iM~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~  320 (546)
T PRK14869        244 QSIPVSYIMTT-EDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVISRYHLLSPVRKKVILVDHNEKSQAVE  320 (546)
T ss_pred             cCCCHHHhccC-CCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEEHHHhhccccCceEEEcCcccccccc
Confidence            36789999982 3888999999999 99999999999999999876 899999999999864321               


Q ss_pred             -----------Ccccccccccccceee---cCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccc
Q 010540          289 -----------TETPVSAVSIRRIPRV---PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK  347 (508)
Q Consensus       289 -----------~~~~V~dim~~~v~~V---~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~  347 (508)
                                 +..+++++|.+.+..+   +...+...+.+.|++.+....|++... ...||+  ++.+.++
T Consensus       321 ~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~~-ll~gIl--sDT~~f~  390 (546)
T PRK14869        321 GIEEAEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAGL-LLAAIL--SDTLLFK  390 (546)
T ss_pred             chhhceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH--HHhcCcc
Confidence                       0113455655554433   445666788888898888888877632 467888  7777764

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.46  E-value=0.00034  Score=60.24  Aligned_cols=55  Identities=15%  Similarity=0.250  Sum_probs=49.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+|+++|.+  ++..+++++++. ++++.|.++++..+||++++ ++++|+++.+|+..
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            679999987  677899999998 99999999999999999865 78999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.44  E-value=0.00029  Score=59.55  Aligned_cols=58  Identities=21%  Similarity=0.315  Sum_probs=50.3

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ....++.++|.+  ++.++++++++. ++++.+.+++.+.+||++++ ++++|+++.+|++.
T Consensus        56 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          56 ILTLPVADVMTR--NPKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             cccCCHHHhhcc--CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            344579999987  667899999999 99999999999999999865 88999999999874

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.44  E-value=0.00022  Score=69.11  Aligned_cols=90  Identities=20%  Similarity=0.270  Sum_probs=71.8

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccccc
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK  369 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~  369 (508)
                      ..+|.++|.+++.++.+++++.++.+.|.+++++-+||+|                                        
T Consensus       171 k~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----------------------------------------  210 (294)
T COG2524         171 KEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD----------------------------------------  210 (294)
T ss_pred             cchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec----------------------------------------
Confidence            4679999999999999999999999999999999999998                                        


Q ss_pred             CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCccccccce--eEE
Q 010540          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHK--RIR  447 (508)
Q Consensus       370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~~~~~~~--~~~  447 (508)
                                                               +++++||+|+.||.+.+...   +..-...+..+  -+.
T Consensus       211 -----------------------------------------~dk~vGiit~~dI~~aia~g---~~~~kV~~~M~k~vit  246 (294)
T COG2524         211 -----------------------------------------DDKIVGIITLSDIAKAIANG---NLDAKVSDYMRKNVIT  246 (294)
T ss_pred             -----------------------------------------CCceEEEEEHHHHHHHHHcC---CccccHHHHhccCCce
Confidence                                                     45999999999999998752   22121222222  388


Q ss_pred             eccccChHHHhhcCCC
Q 010540          448 VAAAAAASSVARAPSS  463 (508)
Q Consensus       448 v~~~~~~~~~~~~~~~  463 (508)
                      ++....+.|.-|.+..
T Consensus       247 I~eDe~i~dAir~M~~  262 (294)
T COG2524         247 INEDEDIYDAIRLMNK  262 (294)
T ss_pred             EcCchhHHHHHHHHHh
Confidence            8888888887776543

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.40  E-value=0.00027  Score=60.89  Aligned_cols=39  Identities=23%  Similarity=0.235  Sum_probs=35.9

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd   96 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVD   96 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC
Confidence            458899888999999999999999999999999999999

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.33  E-value=0.00071  Score=73.42  Aligned_cols=100  Identities=13%  Similarity=0.208  Sum_probs=70.4

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc---cccccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---PVSAVSIR  299 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~---~V~dim~~  299 (508)
                      ..+.+|+++|++..+++++++++++. ++++.|.+++.+.+||++++ ++++|+|+.+|+++.......   ..+.+++-
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~  235 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHKENPLELLDSSKRYVVG  235 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcccChhhhhhhccCeeee
Confidence            45678999999766889999999998 99999999999999999865 789999999999975422110   01111110


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~V  327 (508)
                        ..+..+ ...+..+.+.+.+.+...|
T Consensus       236 --~av~~~-~~~~ra~~Lv~aGvd~i~v  260 (502)
T PRK07107        236 --AGINTR-DYAERVPALVEAGADVLCI  260 (502)
T ss_pred             --eccChh-hHHHHHHHHHHhCCCeEee
Confidence              123322 2445555666667766554

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.32  E-value=0.00037  Score=59.49  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=49.4

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.+++++|..  ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus        58 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          58 TAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             cCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            4568889976  778899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.26  E-value=0.00047  Score=59.21  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=50.5

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCC--CcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP--KNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~--d~ivGiv~~kDll~  284 (508)
                      .+.+++++|+.-.++.++++++++. ++++.|.+++++.+||++++.  ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            4567888997323678999999998 999999999999999998753  58999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.16  E-value=0.00075  Score=57.23  Aligned_cols=56  Identities=20%  Similarity=0.401  Sum_probs=48.8

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.+++++|.+  .+.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            3468899976  677899999998 99999999999999999865 78999999999873

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.14  E-value=0.00031  Score=69.28  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=96.8

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCC-CCccccccccccc
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDC-DLTAPLLSKQDEK  369 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~-~l~~p~~~i~~~~  369 (508)
                      ....+||.+++++++++++++++.++|++++.+-.||+||..+++|+|  |.+|+++...-....+ .-.+|...+.-+.
T Consensus       245 LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiV--t~~dl~~~a~~~p~qrlr~~~~~~vk~imt  322 (382)
T COG3448         245 LTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIV--TQRDLLKHARPSPFQRLRFLRPPTVKGIMT  322 (382)
T ss_pred             ccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeee--eHHHHhhccCcchHHHhhccCCCccccccc
Confidence            446789999999999999999999999999999999999999999999  9999997554322211 1112222222334


Q ss_pred             CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHh
Q 010540          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (508)
Q Consensus       370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeiv  428 (508)
                      .+...+..+++.-++...|...-.|--.++     |    +.|+++||||-.|++..+.
T Consensus       323 ~~v~tv~pdtpa~~lvp~lad~g~H~lpvl-----d----~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         323 TPVVTVRPDTPAVELVPRLADEGLHALPVL-----D----AAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             CcceeecCCCcHHHHHHHhhcCCcceeeEE-----c----CCCcEEEEeeHHHHHHHHH
Confidence            466778888888888877776655443333     4    8999999999999998764

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.14  E-value=0.00077  Score=57.51  Aligned_cols=58  Identities=21%  Similarity=0.399  Sum_probs=51.1

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.+.++.++|.+  ++.++++++++. ++++.+.+.+.+++||++++ ++++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            356789999976  788999999998 99999999999999999865 78999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.12  E-value=0.0013  Score=71.13  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=71.8

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccc----cccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSA----VSIRRI  301 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~d----im~~~v  301 (508)
                      .+++++|++  ++.++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++.....  +..+    .+....
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aa  221 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAA  221 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCC--chhhhhhccchHhh
Confidence            569999986  889999999998 99999999999999999875 7899999999999754332  1211    112222


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                        +.......+.++.|.+.+.+. +++|
T Consensus       222 --v~~~~~~~~~a~~Lv~aGvd~-i~~D  246 (479)
T PRK07807        222 --VGINGDVAAKARALLEAGVDV-LVVD  246 (479)
T ss_pred             --hccChhHHHHHHHHHHhCCCE-EEEe
Confidence              223344678888888888887 5556

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.11  E-value=0.0016  Score=70.69  Aligned_cols=109  Identities=18%  Similarity=0.238  Sum_probs=78.3

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc---ccccccccccc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRRI  301 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~---~~V~dim~~~v  301 (508)
                      +.+++++|++ .++++++++.++. ++++.|.+++++.+||++++ ++++|+++.+|++.......   ..-..++....
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aa  222 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAA  222 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEee
Confidence            4579999983 3788999999998 99999999999999999876 78999999999987543211   11122223333


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv  338 (508)
                      ..++++  -.+.++.|.+.+.+.+.|...+|+..|++
T Consensus       223 i~~~~~--~~e~a~~L~~agvdvivvD~a~g~~~~vl  257 (486)
T PRK05567        223 VGVGAD--NEERAEALVEAGVDVLVVDTAHGHSEGVL  257 (486)
T ss_pred             cccCcc--hHHHHHHHHHhCCCEEEEECCCCcchhHH
Confidence            344442  27788888888888664433467766666

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.08  E-value=0.00095  Score=57.45  Aligned_cols=58  Identities=19%  Similarity=0.434  Sum_probs=51.1

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ....+++++|.+  .+.++++++++. ++++.|.+.+.+++||++++ ++++|+++.+|++.
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            456679999976  788899999998 99999999999999999864 78999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.06  E-value=0.00048  Score=59.30  Aligned_cols=114  Identities=17%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccc---c-ccccCCceee
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLS---K-QDEKTESVVV  375 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~---i-~~~~~~~~~V  375 (508)
                      ++.++++++++.++++.|.+++.+.+||+|+.|+++|++  +.+|++........... ..+...   . ........++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv--~~~dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v   78 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVY--SRFDVINLAKEGAYNNL-DLTVGEALERRSQDFEGVRTC   78 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEE--eHHHHHHHHhcCccccc-cCCHHHHHhhcccCCCCCeEE
Confidence            567899999999999999999999999999999999999  99999865432211111 001011   0 0112345789


Q ss_pred             cCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHH
Q 010540          376 DVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFE  425 (508)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIle  425 (508)
                      +.+.++.+..+.|..+..+...+++         ++|+++|+||.+|+++
T Consensus        79 ~~~~~l~~~~~~m~~~~~~~l~Vvd---------~~~~~~Givt~~di~~  119 (120)
T cd04641          79 SPDDCLRTIFDLIVKARVHRLVVVD---------ENKRVEGIISLSDILQ  119 (120)
T ss_pred             cCCCcHHHHHHHHHhcCccEEEEEC---------CCCCEEEEEEHHHhhc
Confidence            9999999999999988655533333         5689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.06  E-value=0.0011  Score=55.33  Aligned_cols=56  Identities=21%  Similarity=0.385  Sum_probs=48.7

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.+++++|.+  .+.++++++++. ++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            3468899976  567889999998 99999999999999999875 78999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.03  E-value=0.0011  Score=55.98  Aligned_cols=55  Identities=18%  Similarity=0.389  Sum_probs=48.2

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.++.++|.+  ++.++++++++. ++++.|.+++..++||+++  ++++|+++.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEEHHHhhc
Confidence            4578899975  677899999998 9999999999999999974  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.03  E-value=0.0016  Score=54.27  Aligned_cols=54  Identities=15%  Similarity=0.314  Sum_probs=47.1

Q ss_pred             ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +++++|.+  ....+++++++. ++++.|.+++.+.+||++++ ++++|+++.+|++.
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            47888976  566789999998 99999999999999999875 78999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.03  E-value=0.0012  Score=55.63  Aligned_cols=57  Identities=19%  Similarity=0.404  Sum_probs=50.0

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|.+  ++.+++++.++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            35578999976  678899999998 99999999999999999865 78999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.02  E-value=0.0013  Score=56.74  Aligned_cols=52  Identities=23%  Similarity=0.254  Sum_probs=45.6

Q ss_pred             cccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (508)
Q Consensus       228 V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll  283 (508)
                      +.++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|+.
T Consensus        70 ~~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          70 DLTIGTS--DVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             hcccCcC--CceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            3557765  788999999998 99999999999999999875 7899999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.02  E-value=0.00093  Score=68.68  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=51.9

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      +.+.+|+++|++  ++.++++++++. ++++.|.+++..++||+++  ++++|+++.+|++++
T Consensus       266 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit~~dil~~  323 (326)
T PRK10892        266 LRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLHMHDLLRA  323 (326)
T ss_pred             cccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEEhHHhHhc
Confidence            456789999987  788999999998 9999999999999999974  689999999999854

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.01  E-value=0.0014  Score=55.72  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             ccccccccccccceEEEeCC--CCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVN--SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~--~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.++.++|.+  ++.+++++  +++. ++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            4578899976  67778776  5777 99999999999999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.01  E-value=0.0013  Score=55.36  Aligned_cols=55  Identities=22%  Similarity=0.475  Sum_probs=48.8

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.+++++|.+  ++.+++++.++. ++++.+.+.+.+++||+++  ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            4578999976  778899999998 9999999999999999986  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.00  E-value=0.00085  Score=59.72  Aligned_cols=93  Identities=12%  Similarity=0.027  Sum_probs=67.7

Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCc---------cccccccc---
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLT---------APLLSKQD---  367 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~---------~p~~~i~~---  367 (508)
                      ++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|++.............         .+...+..   
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Giv--t~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~   79 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGIL--TLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI   79 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEE--EHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh
Confidence            467899999999999999988889999999999999999  9999987664322211000         00001111   


Q ss_pred             ----ccCCceeecCCCCCccchhhhhcccCC
Q 010540          368 ----EKTESVVVDVDRPLSSGSMNRLSSSQR  394 (508)
Q Consensus       368 ----~~~~~~~V~~~~~l~~~~~~~~~~~~~  394 (508)
                          +....+.++++.++.+..+.|..+...
T Consensus        80 ~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~  110 (133)
T cd04592          80 SYGGQECGLWTCTPDTDLTTAKKLMEAKGVK  110 (133)
T ss_pred             hhcccCCCCEEECCCCCHHHHHHHHHHcCCC
Confidence                124567899999999999999887544

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.99  E-value=0.00087  Score=58.32  Aligned_cols=60  Identities=23%  Similarity=0.357  Sum_probs=46.9

Q ss_pred             cccccccccccccceEEEe----CCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLD----VNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~----~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|.+...+..++    +++++. ++++.|.+++.+.+||++++.++++|+|+.+|++.
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            3567899997633333443    577888 99999999999999999864358999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.96  E-value=0.0015  Score=57.99  Aligned_cols=56  Identities=23%  Similarity=0.348  Sum_probs=49.6

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|++  ++.++++++++. ++++.|.+.+++.+||+++  ++++|+++.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            45689999986  677899999998 9999999999999999985  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.95  E-value=0.0015  Score=55.49  Aligned_cols=56  Identities=16%  Similarity=0.262  Sum_probs=49.1

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            34578899965  788999999998 9999999999999999976  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.93  E-value=0.0031  Score=68.08  Aligned_cols=95  Identities=11%  Similarity=0.132  Sum_probs=68.1

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccc----cccc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAV----SIRR  300 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~di----m~~~  300 (508)
                      +.+++++|++  +++++++++++. ++++.|.+++...+||++++ ++++|+|+.+|+++.....  +..+.    ....
T Consensus       145 ~~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~--~~~d~~grl~Vga  218 (475)
T TIGR01303       145 FTQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYT--PATDAAGRLRIGA  218 (475)
T ss_pred             CCCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCC--chhhhccCceehh
Confidence            3579999997  788999999998 99999999999999999865 7899999999999754322  11111    0111


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAV  327 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~V  327 (508)
                      .  +.......+.++.+.+.+.+...+
T Consensus       219 a--v~~~~~~~~ra~~Lv~aGVd~i~~  243 (475)
T TIGR01303       219 A--VGINGDVGGKAKALLDAGVDVLVI  243 (475)
T ss_pred             e--eeeCccHHHHHHHHHHhCCCEEEE
Confidence            1  333345566677776666666433

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=96.90  E-value=0.0019  Score=54.89  Aligned_cols=56  Identities=23%  Similarity=0.481  Sum_probs=48.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCC-CcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~-d~ivGiv~~kDll~  284 (508)
                      .+++++|.+  ++.++++++++. ++++.|.+++..++||++++. ++++|+++.+|++.
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            347788876  778899999998 999999999999999998642 58999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.90  E-value=0.0025  Score=44.35  Aligned_cols=29  Identities=21%  Similarity=0.255  Sum_probs=26.5

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++++++++.++++.|.+++.+.++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   30 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVD   30 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEEC
Confidence            46789999999999999999999999998

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.90  E-value=0.0019  Score=54.63  Aligned_cols=57  Identities=19%  Similarity=0.345  Sum_probs=49.0

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.++.++|.+  ++.+++.++++. ++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEHHHhhc
Confidence            44568888975  678899999998 99999999999999999865 78999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=96.89  E-value=0.003  Score=53.54  Aligned_cols=54  Identities=22%  Similarity=0.485  Sum_probs=47.6

Q ss_pred             ccccccccccceEEEeCCCCchHHHHHHHHH-cCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILA-RGHSRVPVYSGNPKNIIGLLLVKSLL  283 (508)
Q Consensus       227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~-~~~sr~PV~~~~~d~ivGiv~~kDll  283 (508)
                      +++++|++  +++++.++.++. ++.+.|.+ ++++++||++++..+++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            69999986  788999999998 99999999 79999999997522899999999873

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.89  E-value=0.0015  Score=55.09  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=48.5

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .++.++|.+  ...++++++++. ++++.+.+++..++||++++ ++++|+++.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            578899976  677899999998 99999999999999999875 78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.88  E-value=0.0032  Score=68.46  Aligned_cols=102  Identities=13%  Similarity=0.186  Sum_probs=70.8

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc--ccccccccccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE--TPVSAVSIRRI  301 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~--~~V~dim~~~v  301 (508)
                      .+.+|+++|++..+++++++++++. ++++.|.+++..++||++++ ++++|+|+.+|+++......  .+..|-.-+=.
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~  238 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLL  238 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCcCccccccCCCCCEE
Confidence            4678999999855688999999998 99999999999999999865 78999999999997653211  11111111111


Q ss_pred             e--eecCCCCHHHHHHHHHhCCCeEEEE
Q 010540          302 P--RVPSDMPLYDILNEFQKGSSHMAAV  327 (508)
Q Consensus       302 ~--~V~~~~~l~d~L~~m~~~~~~~a~V  327 (508)
                      +  .|.....-.+-.+.+.+.+..++.+
T Consensus       239 vgaavg~~~~~~~r~~~l~~ag~d~i~i  266 (505)
T PLN02274        239 VGAAIGTRESDKERLEHLVKAGVDVVVL  266 (505)
T ss_pred             EEEEEcCCccHHHHHHHHHHcCCCEEEE
Confidence            1  2333333455566666677777544

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.88  E-value=0.0021  Score=54.16  Aligned_cols=57  Identities=23%  Similarity=0.383  Sum_probs=49.6

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ..++.++|.+  ++.++++++++. ++++.|.+.+.+.+||++++.++++|+++.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          57 LVVASDIMTK--PPVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             cEEHHHhccC--CCcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4689999987  678899999998 99999999999999999762378999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.87  E-value=0.002  Score=54.39  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=48.1

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .++.++|.+  ++.++++++++. ++++.|.+.+.+++||++++ ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            358899976  677899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=96.87  E-value=0.002  Score=54.23  Aligned_cols=57  Identities=14%  Similarity=0.306  Sum_probs=49.8

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      +.+++++|.+  ++..+++++++. ++++.|.+++...+||++++ ++++|+++..|++.+
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4578899976  678899999998 99999999999999999865 789999999999853

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.84  E-value=0.0018  Score=55.72  Aligned_cols=57  Identities=16%  Similarity=0.378  Sum_probs=49.9

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.++.++|.+  .+.++++++++. ++++.|.+.+.+.+||.+++ ++++|+|+.+|+++
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            45678899976  788999999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=96.84  E-value=0.0021  Score=65.86  Aligned_cols=58  Identities=21%  Similarity=0.293  Sum_probs=51.4

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      .+.+|+++|++  ++.++++++++. ++++.|.+++..++||++++ ++++|+++.+|++++
T Consensus       261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt~~di~~~  318 (321)
T PRK11543        261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAINLQDFYQA  318 (321)
T ss_pred             cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHhc
Confidence            34569999987  778899999998 99999999999999999875 689999999999854

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.84  E-value=0.0019  Score=56.54  Aligned_cols=56  Identities=18%  Similarity=0.394  Sum_probs=49.2

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ...++.++|.+  ++..+++++++. ++++.|.+.+.+++||.++  ++++|+++.+|+++
T Consensus        76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            34479999976  778899999998 9999999999999999986  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.83  E-value=0.0054  Score=53.47  Aligned_cols=31  Identities=10%  Similarity=0.076  Sum_probs=28.3

Q ss_pred             ccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++.++++++++.++++.|++++.+.+||+|
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd   32 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD   32 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc
Confidence            5678899999999999999999888999998

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.83  E-value=0.0041  Score=67.55  Aligned_cols=105  Identities=14%  Similarity=0.188  Sum_probs=71.4

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc---ccccccccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET---PVSAVSIRR  300 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~---~V~dim~~~  300 (508)
                      .+.+|+++|+|..++++++++.++. |+++.|.+++...+||++++ ++++|+|+.+|+++.......   .-..+..- 
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vg-  233 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNRGYPNASLDSNGQLLVG-  233 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcccCchhhhccCCCEEEE-
Confidence            3568999999877899999999998 99999999999999999876 789999999999976432110   01111111 


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g  332 (508)
                       ..+.......+.++.+.+.+..+..|--..|
T Consensus       234 -aavg~~~~~~~~~~~l~~ag~d~i~id~a~G  264 (495)
T PTZ00314        234 -AAISTRPEDIERAAALIEAGVDVLVVDSSQG  264 (495)
T ss_pred             -EEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence             1233322335555566666766654433333

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.82  E-value=0.0016  Score=55.79  Aligned_cols=57  Identities=12%  Similarity=0.353  Sum_probs=50.2

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.+.++.++|.+  +..++++++++. ++++.+.+.+.+.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            456678899976  778899999998 9999999999999999986  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=96.79  E-value=0.0029  Score=52.89  Aligned_cols=54  Identities=15%  Similarity=0.222  Sum_probs=47.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .++.++|.+  +..+++++.++. ++++.|.+++.+.+||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEEHHHhhc
Confidence            357788876  577899999998 9999999999999999973  78999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.78  E-value=0.0028  Score=53.10  Aligned_cols=56  Identities=27%  Similarity=0.452  Sum_probs=46.3

Q ss_pred             ccccccccccccceEEEeC-CCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDV-NSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~-~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.++.++|.+  ++..+.. ++++. ++++.|.+.+++++||++++ ++++|+++.+|++.
T Consensus        53 ~~~v~~~~~~--~~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTP--ENLLTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhccc--CceEEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            4578899965  3444556 88988 99999999999999999865 78999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.78  E-value=0.0025  Score=53.74  Aligned_cols=54  Identities=24%  Similarity=0.456  Sum_probs=47.8

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll  283 (508)
                      +.++.++|.+  ++.++.+++++. ++++.|.+++..++||+++  ++++|+++..|++
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~  109 (111)
T cd04626          56 EKKVFNIVSQ--DVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRTKDIL  109 (111)
T ss_pred             cCcHHHHhcC--CcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhc
Confidence            4568888975  778899999998 9999999999999999986  7899999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.77  E-value=0.0025  Score=53.66  Aligned_cols=56  Identities=23%  Similarity=0.261  Sum_probs=49.0

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|.+  ++..+++++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            34578899976  788899999998 9999999999999999975  78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.77  E-value=0.0027  Score=54.40  Aligned_cols=58  Identities=16%  Similarity=0.305  Sum_probs=50.1

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ..+.++.++|..  ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|++.
T Consensus        64 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dl~~  121 (122)
T cd04803          64 ERDVPVAEVMKT--DVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIITRSDFLR  121 (122)
T ss_pred             ccCcCHHHhhCC--CCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEEHHHhhc
Confidence            356678899965  778899999998 99999999999999999875 68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.75  E-value=0.0024  Score=54.54  Aligned_cols=57  Identities=19%  Similarity=0.280  Sum_probs=50.4

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ..+.++.++|.+  .+.+++.++++. ++++.+.+.+++.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            456779999987  778899999998 9999999999999999975  78999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=96.74  E-value=0.0021  Score=56.52  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ....+++++|.+  ++.++++++++. ++++.|.+.+.+++||++ + ++++|+++.+|+++
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd-~-g~~~Gvit~~di~~  134 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR-G-GRLVGIVSRADLLR  134 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec-C-CEEEEEEEhHhhhc
Confidence            456789999976  778899999998 999999999999999998 4 79999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.73  E-value=0.0032  Score=52.78  Aligned_cols=55  Identities=20%  Similarity=0.384  Sum_probs=48.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .++.++|.+  ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            457788876  778899999998 99999999999999999864 78999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.73  E-value=0.0026  Score=54.56  Aligned_cols=57  Identities=19%  Similarity=0.403  Sum_probs=49.7

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ...++.++|.+  ++.+++.++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMST--PVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            45678899975  678899999998 99999999999999999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.72  E-value=0.0038  Score=51.81  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=31.7

Q ss_pred             ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (508)
Q Consensus       299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv  338 (508)
                      ++++.+++++++.++++.|.+++.+.+||+|+.|+..|++
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv   40 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGII   40 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEE
Confidence            3567899999999999999888999999999433333333

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.72  E-value=0.0031  Score=52.67  Aligned_cols=55  Identities=29%  Similarity=0.563  Sum_probs=47.9

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .++.++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            457888976  678899999998 99999999999999999865 78999999999873

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.71  E-value=0.0024  Score=53.95  Aligned_cols=55  Identities=16%  Similarity=0.303  Sum_probs=48.5

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.++.++|.+  ++.++++++++. ++++.|.+++.+.+||+++  +.++|+++.+|+++
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            4578899976  677899999998 9999999999999999986  78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.70  E-value=0.0035  Score=52.60  Aligned_cols=57  Identities=19%  Similarity=0.321  Sum_probs=49.1

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|.+  ++.++++++++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            34678889976  778899999998 99999999999999999865 78999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.69  E-value=0.003  Score=52.51  Aligned_cols=54  Identities=19%  Similarity=0.351  Sum_probs=48.2

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll  283 (508)
                      +.++.++|.+  +..++++++++. ++++.|.+++.+.+||+++  ++++|+++.+|++
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence            4568899976  778899999998 9999999999999999986  7899999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=96.69  E-value=0.0031  Score=53.04  Aligned_cols=56  Identities=18%  Similarity=0.361  Sum_probs=48.9

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|.+  ++.++++++++. ++++.|.+++.+.+||.+ + ++++|+++.+|++.
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678899976  678899999998 999999999999999998 3 78999999999873

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.67  E-value=0.0033  Score=52.98  Aligned_cols=56  Identities=23%  Similarity=0.464  Sum_probs=48.5

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.++.++|.+  ++.++++++++. ++++.+.+++...+||++++  +++|+++.+|++.
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEhhhhhc
Confidence            34578899976  678889999998 99999999999999999863  8999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.66  E-value=0.0023  Score=54.22  Aligned_cols=55  Identities=13%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|.+  .+.++++++++. ++++.|.+.+  .+||++++ ++++|+++.+|+++
T Consensus        61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit~~dil~  115 (116)
T cd04643          61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIITRREILK  115 (116)
T ss_pred             hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEEHHHhhc
Confidence            45679999987  678899999998 9999998755  59999865 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.63  E-value=0.0034  Score=52.82  Aligned_cols=55  Identities=18%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .++.++|..  ++.+++++.++. ++++.|.+++..++||++++ ++++|+++.+|+..
T Consensus        56 ~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMRR--DFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhcC--CCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            468888965  778899999998 99999999999999999865 78999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.62  E-value=0.0032  Score=53.52  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=45.7

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ..++++|.+....+..++++++. ++++.|.+++...+||++++ ++++|+++.+|++.
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            45889997633333334488988 99999999999999999865 78999999999873

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.57  E-value=0.0036  Score=53.71  Aligned_cols=55  Identities=29%  Similarity=0.448  Sum_probs=48.3

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+++++|.+  ++.++++++++. ++++.+.+++.+++||++++ ++++|+++.+|++.
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            358888975  788899999998 99999999999999999765 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.54  E-value=0.0041  Score=52.29  Aligned_cols=55  Identities=24%  Similarity=0.433  Sum_probs=48.4

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.++.++|..  ++.++++++++. ++++.|.+++.+++||+++  ++++|+++.+|++.
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            3568888865  778899999998 9999999999999999986  78999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=96.50  E-value=0.0035  Score=56.71  Aligned_cols=37  Identities=14%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ...+|.+|++++.+++++.++++.|+.+++...||++
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~  103 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE  103 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee
Confidence            5567899999999999999999999999999999998

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.48  E-value=0.0043  Score=53.86  Aligned_cols=58  Identities=21%  Similarity=0.377  Sum_probs=49.3

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeC-CCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~-~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|++  ++++++++.++. ++++.|.+.++..+||+++ +.++++|+|+.+|++.
T Consensus        69 ~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          69 LDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             ccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            45678999976  788899999998 9999999999999999853 3478999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=96.47  E-value=0.0054  Score=68.11  Aligned_cols=39  Identities=18%  Similarity=0.154  Sum_probs=36.1

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .+++|+|.++...+++++++.|+++.|.+++.+..||+|
T Consensus       447 ~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD  485 (574)
T PRK01862        447 TQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVD  485 (574)
T ss_pred             CcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEc
Confidence            568999988899999999999999999999889999999

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=96.44  E-value=0.0089  Score=50.11  Aligned_cols=54  Identities=20%  Similarity=0.362  Sum_probs=46.6

Q ss_pred             ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +++++|.+  ++.++++++++. ++++.|.+++...+||++++ ++++|+++.+|+.+
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEEHHHhhh
Confidence            47788865  677899999998 99999999998999999865 78999999999863

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.43  E-value=0.007  Score=41.94  Aligned_cols=46  Identities=17%  Similarity=0.457  Sum_probs=39.5

Q ss_pred             eEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          238 TFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       238 vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      +.++++++++. ++++.+.+++++.+||++++ ++++|+++.+++...
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHh
Confidence            35678888988 99999999999999999875 789999999998753

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.43  E-value=0.0082  Score=64.58  Aligned_cols=39  Identities=13%  Similarity=0.083  Sum_probs=36.0

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .+++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus       335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd  373 (454)
T TIGR01137       335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT  373 (454)
T ss_pred             CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            568999989999999999999999999988888999998

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.39  E-value=0.013  Score=63.50  Aligned_cols=102  Identities=15%  Similarity=0.190  Sum_probs=70.6

Q ss_pred             ccccccccccc---ceEEEeCC-CCchHHHHHHHHHcCCcEEEEee-CCCCcEEEEeEHhHHhccCCC------------
Q 010540          226 KTAEEAMTPIE---STFSLDVN-SKLDWEAMGKILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRPE------------  288 (508)
Q Consensus       226 ~~V~dIMtpr~---~vv~v~~~-~tl~~eal~~~~~~~~sr~PV~~-~~~d~ivGiv~~kDll~~~~~------------  288 (508)
                      .-..++|.|+.   ....+..+ .+++ +....|.++.|+.+||+- ++.+.++|++..+|+.....+            
T Consensus       543 t~~~~v~~p~~~~~~L~~i~~~s~tl~-~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~  621 (696)
T KOG0475|consen  543 TLAIPVMEPCRSESCLIVITQDSMTLE-DLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTS  621 (696)
T ss_pred             chhhhhhchhcCchhheeccccceeHH-HHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecc
Confidence            34556665532   24455544 5776 777788899999999884 445779999999998643210            


Q ss_pred             ---------------CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEE
Q 010540          289 ---------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVV  328 (508)
Q Consensus       289 ---------------~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~Vv  328 (508)
                                     .....+++|--.+.+|...+|.+-+++.|++-+.+...|.
T Consensus       622 ~~f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~  676 (696)
T KOG0475|consen  622 IYFNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT  676 (696)
T ss_pred             cccCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc
Confidence                           0123566665666789999999999999997777766553

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.35  E-value=0.0026  Score=68.46  Aligned_cols=136  Identities=17%  Similarity=0.167  Sum_probs=105.1

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecC---CCccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK---GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~---g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      ..++.|.+++.++++++++.++++.|.+++.+.+||+|+.   |+++|++  |.+|++....   .       ...+.+.
T Consensus        81 ~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIV--t~rDL~~~~~---~-------~~~V~dv  148 (450)
T TIGR01302        81 RAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGII--TKRDIRFVKD---K-------GKPVSEV  148 (450)
T ss_pred             cccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEE--EHHHHhhhhc---C-------CCCHHHh
Confidence            4667788899999999999999999999999999999987   7999999  9999974321   0       1122233


Q ss_pred             cC--CceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCccccccceeE
Q 010540          369 KT--ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRI  446 (508)
Q Consensus       369 ~~--~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~~~~~~~~~  446 (508)
                      ++  ..++++++.++.+.++.|+.+..+...+++         ++|+++|+||.+||++++.   ..   ....+...+|
T Consensus       149 m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD---------e~G~lvGiVT~~DIl~~~~---~~---~~~~d~~g~l  213 (450)
T TIGR01302       149 MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD---------KNGELVGLITMKDIVKRRK---FP---HASKDENGRL  213 (450)
T ss_pred             hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc---------CCCcEEEEEEhHHhhhccc---CC---cceEeCCCCE
Confidence            33  688999999999999999998776655555         8999999999999998852   11   1112223478


Q ss_pred             EeccccCh
Q 010540          447 RVAAAAAA  454 (508)
Q Consensus       447 ~v~~~~~~  454 (508)
                      +|+|++++
T Consensus       214 ~V~aav~~  221 (450)
T TIGR01302       214 IVGAAVGT  221 (450)
T ss_pred             EEEEEecC
Confidence            88888887

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.34  E-value=0.0083  Score=52.01  Aligned_cols=52  Identities=19%  Similarity=0.296  Sum_probs=44.7

Q ss_pred             ccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       229 ~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++..|+++
T Consensus        74 ~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dil~  125 (126)
T cd04642          74 DGVKSR--PLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVITLTDIIS  125 (126)
T ss_pred             cccccC--CCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEEHHHHhc
Confidence            345544  678899999998 99999999999999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.32  E-value=0.0075  Score=50.57  Aligned_cols=55  Identities=16%  Similarity=0.301  Sum_probs=47.7

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .++.++|.+  ++.+++++.++. ++++.|.+.+...+||++++ ++++|+++.+|+++
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEEhHHhhc
Confidence            467788865  778899999998 99999999999999999865 78999999999873

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.31  E-value=0.0081  Score=50.56  Aligned_cols=56  Identities=16%  Similarity=0.276  Sum_probs=48.0

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.+++++|.+  ++.+++.++++. ++++.+.+++...+||++++ +.++|+++.+|+++
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEEHHHhcc
Confidence            3468888876  678899999998 99999999899999999875 78999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.28  E-value=0.013  Score=61.60  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             HHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-Cccccc
Q 010540          216 IISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-TETPVS  294 (508)
Q Consensus       216 ~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-~~~~V~  294 (508)
                      .+..+-...-.+++++|.|....  ...+.+   .+++.   ++.+.+.|+++      |+++..+...+... .+..+.
T Consensus       264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~~~---~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  329 (382)
T TIGR03415       264 FVAHTNPLNVLTARSLMRPLTDL--EHVDGG---WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAEQEVE  329 (382)
T ss_pred             HhcccCcccceeHHHHhcccccc--cccCcc---hhhhh---cccceeEeecc------ceecccchHhHhhcccccchh
Confidence            34444445667899999763332  222222   23333   77888888764      78877776543221 233466


Q ss_pred             ccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       295 dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      + +.+...++++++++.+++..+.+....+ +|+|
T Consensus       330 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~  362 (382)
T TIGR03415       330 S-LEAAPTVINPDTLMRDVLAARHRTGGAI-LLVE  362 (382)
T ss_pred             h-hcccCcccCCCCcHHHHHHHHhcCCCCe-EEee
Confidence            6 5678889999999999999888776654 4556

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.18  E-value=0.0084  Score=64.31  Aligned_cols=70  Identities=23%  Similarity=0.287  Sum_probs=59.9

Q ss_pred             HHHHHHHhhc---CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540          213 ETTIISGALD---LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (508)
Q Consensus       213 E~~~i~~vl~---l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~  287 (508)
                      ++++..+++.   =...+|+++||.  ++++++.++-+- |++-.|.++++.++||.++  ++++|+++..|++....
T Consensus       198 ~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         198 RKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFS  270 (610)
T ss_pred             hHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhC
Confidence            4566677765   245689999997  999999999988 9999999999999999986  79999999999997543

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.15  E-value=0.01  Score=49.99  Aligned_cols=49  Identities=20%  Similarity=0.364  Sum_probs=43.4

Q ss_pred             ccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          231 AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       231 IMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +|.+  ++.++++++++. ++++.|.+++...+||+++  ++++|+++.+|+++
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEhhhhhc
Confidence            7875  677899999998 9999999999999999953  78999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.15  E-value=0.0045  Score=52.05  Aligned_cols=109  Identities=18%  Similarity=0.154  Sum_probs=83.4

Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCC
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVD  378 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~  378 (508)
                      ++.++++++++.++++.|.+++...++|+|+. |+.+|++  +.+|+++........    .+   +....+...+++.+
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v--~~~~l~~~~~~~~~~----~~---~~~~~~~~~~v~~~   72 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVV--HVKDLLRALAEGEED----LD---LRDLLRPPLFVPES   72 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEE--EHHHHHHHHHcCCCc----CC---HHHHhcCCeecCCC
Confidence            46789999999999999998888889999987 9999999  999998765432211    11   22233456788999


Q ss_pred             CCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHH
Q 010540          379 RPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEE  426 (508)
Q Consensus       379 ~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIlee  426 (508)
                      .++.+..+.|..+......++     +    ++|+++|+||..|+++|
T Consensus        73 ~~l~~~~~~~~~~~~~~~~Vv-----~----~~~~~~Gvit~~di~~~  111 (111)
T cd04590          73 TPLDDLLEEMRKERSHMAIVV-----D----EYGGTAGLVTLEDILEE  111 (111)
T ss_pred             CcHHHHHHHHHhcCCcEEEEE-----E----CCCCEEEEeEHHHhhcC
Confidence            999999999998654432223     3    57999999999999875

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=95.98  E-value=0.011  Score=50.43  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=46.6

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCc---EEEEeeCCCCcEEEEeEHhHHhc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS---RVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~s---r~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.+++++|.+  ++..+++++++. ++++.|.+++..   ..||++++ ++++|+++.+|++.
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEEHHHHhc
Confidence            45679999986  788899999998 999999887753   44677665 88999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.97  E-value=0.012  Score=52.61  Aligned_cols=55  Identities=13%  Similarity=0.351  Sum_probs=48.9

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll  283 (508)
                      ...++.++|.+  ++.+++.++++. ++++.+.+.+++++||+++  ++++|+++.+|++
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~  141 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTRGDII  141 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhh
Confidence            45678899976  778999999998 9999999999999999986  7899999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.93  E-value=0.018  Score=58.17  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=72.9

Q ss_pred             hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcc
Q 010540          212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETET  291 (508)
Q Consensus       212 ~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~  291 (508)
                      .-++.++++-...-.++++||.+ .+......+..-...++..+.+.+.+.+-+++ ..++.+|+++..+....      
T Consensus       260 YV~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------  331 (386)
T COG4175         260 YVRDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------  331 (386)
T ss_pred             HHHHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc------
Confidence            34567777777788899999985 23222222222111566777777666666666 34679999998877632      


Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                          .+..++..++.++++.+.+....+...+++ |+|
T Consensus       332 ----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvd  364 (386)
T COG4175         332 ----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVD  364 (386)
T ss_pred             ----cccccccccCccchHHHHHHHHhcCCCcee-EEc
Confidence                346778889999999999999998887776 556

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.56  E-value=0.024  Score=47.19  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=45.4

Q ss_pred             ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.++|.+  ++.+++.++++. ++++.|.+++...+||+++  ++++|+++.+|++.
T Consensus        53 ~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          53 QLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             hHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            46777865  677789999998 9999999999999999984  68999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.54  E-value=0.039  Score=45.43  Aligned_cols=53  Identities=23%  Similarity=0.460  Sum_probs=46.0

Q ss_pred             cccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       228 V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.++|.+  +..+++.+.++. ++++.+.+.+.+.+||++++ ++++|+++.+|+++
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHhhc
Confidence            5677765  677888999998 99999999999999999876 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=95.54  E-value=0.019  Score=47.85  Aligned_cols=54  Identities=17%  Similarity=0.238  Sum_probs=42.8

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      +.++.++|.+  ++.++++++++. ++++.|.+ . ...||++++ ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt~~di~~  109 (110)
T cd04609          56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIITRADLLK  109 (110)
T ss_pred             CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEeHHHhhc
Confidence            3567888865  677899999988 88888877 3 347888765 78999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=94.36  E-value=0.063  Score=54.64  Aligned_cols=60  Identities=17%  Similarity=0.330  Sum_probs=53.6

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      -++.++..+|++  +.+++.+.+++. .+.+.|.-+++.-+||++++ .+++|+++.+|+++.+
T Consensus       246 ~~~t~ieKVMtk--np~tv~~~tsVA-svaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~l  305 (432)
T COG4109         246 KPSTTIEKVMTK--NPITVRAKTSVA-SVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSL  305 (432)
T ss_pred             CCCccHHHHhcc--CCeeecccchHH-HHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHH
Confidence            366789999997  788999999998 99999999999999999976 7899999999999753

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=94.14  E-value=0.054  Score=57.95  Aligned_cols=61  Identities=15%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      .-++..++++|.+  +++++.++++.+ |+.+.+.+++....||++++ ++++|+++..|++...
T Consensus       192 a~~~~~i~~im~~--~~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi  252 (451)
T COG2239         192 AEPDELLKDLMED--DVVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVI  252 (451)
T ss_pred             CCcHhHHHHHhcc--cceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHH
Confidence            4577889999998  588999999988 99999999999999999976 8999999999998643

>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters

Probab=93.14  E-value=0.038  Score=44.74  Aligned_cols=32  Identities=9%  Similarity=0.016  Sum_probs=26.9

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ  478 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  478 (508)
                      .|.|+|.++++++++.+|++...++++  |+|||
T Consensus         7 ~~~v~G~~~l~~l~~~~~~~l~~~~~~--Tl~G~   38 (81)
T PF03471_consen    7 TYIVSGSTPLDDLNELLGLDLPEEDYD--TLGGL   38 (81)
T ss_dssp             EEEEETTSBHHHHHHHHTS-TTTTTTS--BHHHH
T ss_pred             EEEEEecCCHHHHHHHHCcCCCccchh--hHHHH
Confidence            699999999999999999987665555  56999

This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=90.61  E-value=0.38  Score=50.35  Aligned_cols=56  Identities=21%  Similarity=0.453  Sum_probs=48.9

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.+.|.+  .+.++++++++. +++..+.++++. +||++++ ++++|+|+..+++.+.
T Consensus       302 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       302 QGLQDVLID--DIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDAL  357 (363)
T ss_pred             Cchhhhhcc--CCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHH
Confidence            468888876  677899999999 999999999998 9999876 8999999999998654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=90.15  E-value=0.3  Score=50.79  Aligned_cols=100  Identities=11%  Similarity=0.107  Sum_probs=66.8

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---Cccccccccc
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSI  298 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~  298 (508)
                      .=....+.++|+++.  ++.+.+.+++ ++-+.+.++.-.++||++++ ++++.++...||.+...-   ....-+++|.
T Consensus       167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~~~yPlask~~~kqll~  242 (503)
T KOG2550|consen  167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKNRDYPLASKDSTKQLLC  242 (503)
T ss_pred             hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-CceeeeeehhhhhhhcCCCccccCcccceee
Confidence            345667899999955  7788888988 88888888888899999876 999999999999864321   1122233333


Q ss_pred             ccceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (508)
Q Consensus       299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~V  327 (508)
                      ...  |.-...=.+-+..+.+.+....+.
T Consensus       243 gAa--iGTre~dK~rl~ll~~aGvdvviL  269 (503)
T KOG2550|consen  243 GAA--IGTRDDDKERLDLLVQAGVDVVIL  269 (503)
T ss_pred             eec--cccccchhHHHHHhhhcCCcEEEE
Confidence            222  222222344555666666665543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=86.10  E-value=1.5  Score=46.54  Aligned_cols=58  Identities=17%  Similarity=0.332  Sum_probs=48.2

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~  287 (508)
                      +.+++++|.+  +..++++++++. +++..+.++.+. +||++++ ++++|+|+..+++....
T Consensus       336 ~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        336 QQGLDAALID--APLAVDAQTPLS-ELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALD  393 (400)
T ss_pred             CCchhhhhcc--CCceeCCCCCHH-HHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHH
Confidence            3467788865  677899999999 999999987766 9999865 89999999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	508
4hg0_A	292	Crystal Structure Of Magnesium And Cobalt Efflux Pr		1e-06
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		4e-06
3lhh_A	172	The Crystal Structure Of Cbs Domain Protein From Sh		9e-06

>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein Corc, Northeast Structural Genomics Consortium (nesg) Target Er40 Length = 292

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 12/158 (7%)
Query: 189 RAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLD 248
           R +L AL+    +++G+   +  D    + G  D+ ++   +   P     +L  N  LD
Sbjct: 34  RDELLALI----RDSGQNDLIDEDTRDXLEGVXDIADQRVRDIXIPRSQXITLKRNQTLD 89
Query: 249 WEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----V 304
            E +  I+   HSR PV S +  +I G+L  K LL   P   +   A S  ++ R    V
Sbjct: 90  -ECLDVIIESAHSRFPVISEDKDHIEGILXAKDLL---PFXRSDAEAFSXDKVLRQAVVV 145
Query: 305 PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD 342
           P    +   L EF+    H A V+   G    L  + D
Sbjct: 146 PESKRVDRXLKEFRSQRYHXAIVIDEFGGVSGLVTIED 183

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           E+T  +   P      LD++  L  + +  I+   HSR PVY  +  NIIG+LL K LL 
Sbjct: 4   ERTVADIXVPRSRXDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLR 62
Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVVKAKG 332
              E      A+ IR + R    +P    L  +L EF+   +H+A V+   G
Sbjct: 63  YXLE-----PALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHG 109

>pdb|3LHH|A Chain A, The Crystal Structure Of Cbs Domain Protein From Shewanella Oneidensis Mr-1 Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 1/142 (0%)
Query: 201 QEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH 260
           QE    G + H+E   +     L E+T      P      LD+N  LD   +  +    H
Sbjct: 17  QEGSSAGVIEHNEHAXVKNVFRLDERTISSLXVPRSDIVFLDLNLPLDAN-LRTVXQSPH 75
Query: 261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKG 320
           SR PV   N  + +G++  K LL+     E       ++    VP+ +   ++L  F+  
Sbjct: 76  SRFPVCRNNVDDXVGIISAKQLLSESIAGERLELVDLVKNCNFVPNSLSGXELLEHFRTT 135
Query: 321 SSHMAAVVKAKGKSKTLPPMTD 342
            S    VV   G  K L  + D
Sbjct: 136 GSQXVFVVDEYGDLKGLVTLQD 157

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	508
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	1e-27
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	1e-26
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	7e-26
3ocm_A	173	Putative membrane protein; structural genomics, PS	3e-25
3oco_A	153	Hemolysin-like protein containing CBS domains; str	6e-24
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	1e-22
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	2e-21
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	3e-21
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	1e-20
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	1e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	3e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	6e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	8e-04

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  107 bits (270), Expect = 1e-27
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 5/148 (3%)

Query: 181 GHNEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFS 240
           GH +    +  ++A++    QE    G + H+E  ++     L E+T    M P      
Sbjct: 1   GHLDDNVTQEDIQAML----QEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVF 56

Query: 241 LDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRR 300
           LD+N  LD   +  ++   HSR PV   N  +++G++  K LL+     E       ++ 
Sbjct: 57  LDLNLPLD-ANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLVKN 115

Query: 301 IPRVPSDMPLYDILNEFQKGSSHMAAVV 328
              VP+ +   ++L  F+   S M  VV
Sbjct: 116 CNFVPNSLSGMELLEHFRTTGSQMVFVV 143

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  104 bits (262), Expect = 1e-26
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 13/144 (9%)

Query: 189 RAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLD 248
              +  L+    ++A +      D    +   LD ++    +AM        L  N  ++
Sbjct: 5   AEDVLNLL----RQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 249 WEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPR----V 304
                 ++   HSR PV   +   ++G+L  K LL      E       ++ I R    V
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQ----FHLKSILRPAVFV 115

Query: 305 PSDMPLYDILNEFQKGSSHMAAVV 328
           P    L  +L EF++  +HMA V+
Sbjct: 116 PEGKSLTALLKEFREQRNHMAIVI 139

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  102 bits (256), Expect = 7e-26
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP 264
             G +   E  ++    +  EK   E M P      +  +   + + +  +   G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 265 VYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM 324
           V   N  +I+G + ++ L   +           +R I  +  ++ +   L   +K    +
Sbjct: 61  VCRKNKDDILGFVHIRDLYNQKINENKIELEEILRDIIYISENLTIDKALERIRKEKLQL 120

Query: 325 AAVV 328
           A VV
Sbjct: 121 AIVV 124

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score =  101 bits (254), Expect = 3e-25
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 2/127 (1%)

Query: 202 EAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS 261
                     +E  ++SG L L E++    MTP      ++++         ++ A  HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 262 RVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGS 321
             PV  G+   ++G+   K L+              +R    V   + +  +++  ++  
Sbjct: 71  FFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNR-LRDPIIVHESIGILRLMDTLKRSR 129

Query: 322 SHMAAVV 328
             +  V 
Sbjct: 130 GQLVLVA 136

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 96.7 bits (242), Expect = 6e-24
 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYS 267
               ++   +  A ++ +K A + M    S   +DV+  +  +A+   L   +SR PV +
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 268 GNPK-NIIGLLLVKSLLT-VRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMA 325
            N K  IIG      ++   R + +  +S + +R I  VP +M + D++ E       MA
Sbjct: 61  DNDKDKIIGYAYNYDIVRQARIDDKAKISTI-MRDIVSVPENMKVPDVMEEMSAHRVPMA 119

Query: 326 AVV 328
            V+
Sbjct: 120 IVI 122

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 92.5 bits (231), Expect = 1e-22
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKS 281
           +  +    + MTP    F +D    ++ E + K      SR  VYS    NIIG +    
Sbjct: 2   NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLE 60

Query: 282 LLTVRPETETPVSAVSIRRIPR-VPSDMPLYDILNEFQKGSSHMAAVV 328
           L  ++          ++ R  + V ++  L  + ++       +A VV
Sbjct: 61  LFKMQQSGSGQKQLGAVMRPIQVVLNNTALPKVFDQMMTHRLQLALVV 108

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 89.0 bits (222), Expect = 2e-21
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL 282
             E+T  + M P      LD++  L  + +  I+   HSR PVY  +  NIIG+LL K L
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDL 60

Query: 283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVV 328
           L    E    + ++ +R    +P    L  +L EF+   +H+A V+
Sbjct: 61  LRYMLEPALDIRSL-VRPAVFIPEVKRLNVLLREFRASRNHLAIVI 105

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 88.3 bits (220), Expect = 3e-21
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           + +  + M P      +D+N       + ++    H R+ +Y  +  + I +L V+    
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYR 59

Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVV 328
           +  E +   +   + R       VP   PL   L +FQ+    +  VV
Sbjct: 60  LMTEKKE-FTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVV 106

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           +    + M P     S+        E +  ++   HSR PV   +  +++G+LL K LL 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLL- 59

Query: 285 VRPETETPVSAVSIRRIPR----VPSDMPLYDILNEFQKGSSHMAAVV 328
                +    +  ++++ R    VP    L  +L EF+   +HMA V+
Sbjct: 60  -PLILKADGDSDDVKKLLRPATFVPESKRLNVLLREFRANHNHMAIVI 106

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 84.0 bits (209), Expect = 1e-19
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT 284
           ++   + M P     +L  N  LD E +  I+   HSR PV S +  +I G+L+ K LL 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLP 60

Query: 285 VRPETETPVSAVSIRRIPR-VPSDMPLYDILNEFQKGSSHMAAVV 328
                    S   + R    VP    +  +L EF+    HMA V+
Sbjct: 61  FMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVI 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 65/446 (14%), Positives = 121/446 (27%), Gaps = 130/446 (29%)

Query: 67  LEILQRSGTPSEKKQAAAIF--PVVQKQHQLLVTLL--LCNAASMEALPI--YLDKLFNQ 120
              L         ++    F   V++  ++ L++ +       SM         D+L+N 
Sbjct: 68  FWTLLSKQ-----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 121 YVAI----------ILSVTFVLFFGEVIPQAICTRYGLAVGANFVWLV----RILMIICY 166
                          L +   L   E+ P       G+  G+   W+         + C 
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALL--ELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQC- 178

Query: 167 PIAYPIGKILDWV-LGH-NEALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLT 224
                  KI  W+ L + N        L+ L  +  Q        +   + I      + 
Sbjct: 179 --KMD-FKIF-WLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 225 EKTAE---EAMTPIESTFSL----DVNSKLDWEAMG---KILA--RGHSRVPVYSGNPKN 272
            +                 L    +V +   W A     KIL   R        S     
Sbjct: 232 AELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 273 IIGLLLVKSLLTVRPETET-------------PVSAVSIRRIPRVPS-------DMPLYD 312
            I L      LT   E ++             P   ++    PR  S       D     
Sbjct: 288 HISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAESIRDGL--A 342

Query: 313 ILNEFQK-GSSHMAAVVKAKGKS-KTLPPMTDGKK--------PKLNEAKGGDCDLTAPL 362
             + ++      +  ++++   S   L P  + +K        P           +   L
Sbjct: 343 TWDNWKHVNCDKLTTIIES---SLNVLEP-AEYRKMFDRLSVFPP-------SAHIPTIL 391

Query: 363 LSK--QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL 420
           LS    D     V+V V++      + +    Q  +ST                   I++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKEST-------------------ISI 428

Query: 421 EDVFEELLQEEIVDETDEYVDVHKRI 446
             ++ EL  +      +    +H+ I
Sbjct: 429 PSIYLELKVK-----LENEYALHRSI 449

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK--------NI 273
            L E T  + M   +    + V + L+  A+  +   G++ +PV   + +         I
Sbjct: 10  QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315
           +  +     +      +  V  V +  IPR+  + P+     
Sbjct: 69  MNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFG 110

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR---PETETPVSAVSIRRIPRVPS 306
           +A  ++ A G +  PV  G  +  +G++ +  LL  R   P  +  +    +  +     
Sbjct: 26  DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETVRSYRP 83

Query: 307 DMPLYDILNEFQKGSSHMAAVVKAKGK 333
              L+D L         +  +    G+
Sbjct: 84  GEQLFDNLISVAAAKCSVVPLADEDGR 110

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN--------I 273
           +  +   ++ M   E    + + + L+  A+  ++  G+S +PV     K         I
Sbjct: 11  EFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPMYKLHGLISTAMI 69

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN 315
           +  +L    +      E  V  V  + IP +  +      L 
Sbjct: 70  LDGILGLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALE 111

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 11/120 (9%)

Query: 222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK--------NI 273
           +  + T +  + P +    +   + LD  A+  +   G+S +PV   + K         +
Sbjct: 7   EFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTSYKLHGLISMTMM 65

Query: 274 IGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK 333
           +  +L    +         V  V  R IPR+  D  L   +            V    G 
Sbjct: 66  MDAILGLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVN--HPFVCVENDDGY 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	508
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.95
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.92
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.92
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.91
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.9
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.87
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.86
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.85
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.84
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.83
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.83
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.82
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.82
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.82
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.82
3ddj_A	296	CBS domain-containing protein; structural genomics	99.79
4esy_A	170	CBS domain containing membrane protein; structural	99.78
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.78
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.76
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.76
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.76
3ddj_A	296	CBS domain-containing protein; structural genomics	99.73
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.7
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.7
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.7
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.7
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.69
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.69
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.69
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.69
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.69
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.69
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.68
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.67
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.67
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.66
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.66
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.65
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.65
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.65
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.64
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.64
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.64
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.63
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.63
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.62
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.61
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.61
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.61
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.6
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.59
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.58
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.58
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.57
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.56
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.55
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.54
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.52
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.51
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.47
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.46
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.46
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.44
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.44
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.39
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.16
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.07
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.06
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.81
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.63
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.62
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.44
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.41
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.41
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.39
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.34
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.3
4esy_A	170	CBS domain containing membrane protein; structural	98.29
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.29
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.27
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.25
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.22
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.12
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.07
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.04
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	97.98
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	97.98
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.96
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	97.95
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	97.95
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.95
3ocm_A	173	Putative membrane protein; structural genomics, PS	97.94
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.93
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	97.91
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	97.9
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	97.87
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.86
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.85
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.84
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.82
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.79
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.75
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.75
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.75
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.74
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.73
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.73
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.71
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.69
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.69
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.66
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.66
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.64
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.61
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	97.61
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.55
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.53
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.53
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.5
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.46
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.46
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.38
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.37
3ded_A	113	Probable hemolysin; structural genomics, P protein	97.29
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.26
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.12
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.11
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	96.76
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.53
2pli_A	91	Uncharacterized protein; CORC-associated region, M	96.49
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.14
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	94.37
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	94.29
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	94.29
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	94.13
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	94.12
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	94.09
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	94.08
2p13_A	90	CBS domain; alpha-beta structure, structural genom	93.84
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	93.15
2nqw_A	93	CBS domain protein; PFAM03471, hemolysins, CBS dom	89.6

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.95  E-value=9.9e-28  Score=221.78  Aligned_cols=167  Identities=25%  Similarity=0.466  Sum_probs=115.3

Q ss_pred             cccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEE
Q 010540          184 EALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRV  263 (508)
Q Consensus       184 ~~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~  263 (508)
                      .+.+|++||+.+++    ++.+.|.++++|++++++++.+.+.+|+++|+|+.+++++++++++. ++++.|.+++++++
T Consensus         4 ~~~~t~~el~~l~~----~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~   78 (172)
T 3lhh_A            4 DDNVTQEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRF   78 (172)
T ss_dssp             -------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEE
T ss_pred             cccCCHHHHHHHHH----HHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEE
Confidence            46789999999998    44567999999999999999999999999999988999999999999 99999999999999


Q ss_pred             EEeeCCCCcEEEEeEHhHHhccCCCC-cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCC
Q 010540          264 PVYSGNPKNIIGLLLVKSLLTVRPET-ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD  342 (508)
Q Consensus       264 PV~~~~~d~ivGiv~~kDll~~~~~~-~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~  342 (508)
                      ||++++.++++|+|+.+|++.+...+ ..+++++| +++.++++++++.++++.|.+++.+.+||+|             
T Consensus        79 pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-------------  144 (172)
T 3lhh_A           79 PVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-------------  144 (172)
T ss_dssp             EEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-------------
T ss_pred             EEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-------------
Confidence            99987547899999999999765432 46899999 9999999999999999999999999999999             


Q ss_pred             CCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHH
Q 010540          343 GKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLED  422 (508)
Q Consensus       343 kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleD  422 (508)
                                                                                         ++|+++||||.+|
T Consensus       145 -------------------------------------------------------------------~~g~lvGiit~~D  157 (172)
T 3lhh_A          145 -------------------------------------------------------------------EYGDLKGLVTLQD  157 (172)
T ss_dssp             -------------------------------------------------------------------TTSCEEEEEEHHH
T ss_pred             -------------------------------------------------------------------CCCCEEEEeeHHH
Confidence                                                                               6899999999999


Q ss_pred             HHHHHhCCccCCCCc
Q 010540          423 VFEELLQEEIVDETD  437 (508)
Q Consensus       423 Ileeivg~eI~dE~d  437 (508)
                      |+++++| +|.||+|
T Consensus       158 il~~l~~-~~~de~~  171 (172)
T 3lhh_A          158 MMDALTG-EFFQEDG  171 (172)
T ss_dssp             HHHHHHT-TCC----
T ss_pred             HHHHHhC-CCccccC
Confidence            9999999 9999976

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.92  E-value=3.3e-25  Score=201.36  Aligned_cols=138  Identities=22%  Similarity=0.319  Sum_probs=126.1

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEE
Q 010540          186 LFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPV  265 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV  265 (508)
                      .+|++||+.+++.    +.++|.++++|+++++++++|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||
T Consensus         2 ~~t~~el~~li~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLRQ----AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHHH----HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHHh----HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            4789999999983    4567999999999999999999999999999988999999999999 9999999999999999


Q ss_pred             eeCCCCcEEEEeEHhHHhccCCC-CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          266 YSGNPKNIIGLLLVKSLLTVRPE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       266 ~~~~~d~ivGiv~~kDll~~~~~-~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.++++|+++.+|++.+... ...+++++| +++.++++++++.++++.|.+++.+.+||+|
T Consensus        77 vd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd  140 (156)
T 3oi8_A           77 IGEDKDEVLGILHAKDLLKYMFNPEQFHLKSIL-RPAVFVPEGKSLTALLKEFREQRNHMAIVID  140 (156)
T ss_dssp             ESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHC-BCCCEEETTSBHHHHHHHHHHTTCCEEEEEC
T ss_pred             EcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHc-CCCEEECCCCCHHHHHHHHHhcCCeEEEEEC
Confidence            98764699999999999987654 457899997 5688999999999999999999999999999

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.92  E-value=2.1e-25  Score=206.89  Aligned_cols=152  Identities=21%  Similarity=0.318  Sum_probs=136.0

Q ss_pred             ccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh
Q 010540          204 GKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL  283 (508)
Q Consensus       204 ~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll  283 (508)
                      .++|.++++|++++++++.|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+|+.+|++
T Consensus        14 ~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~   92 (173)
T 3ocm_A           14 PAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLV   92 (173)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHH
T ss_pred             HhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHH
Confidence            456999999999999999999999999999988999999999999 9999999999999999987557999999999999


Q ss_pred             ccCCC-CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccc
Q 010540          284 TVRPE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPL  362 (508)
Q Consensus       284 ~~~~~-~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~  362 (508)
                      .+... ...+++  |++++++|++++++.++++.|.+++.+++||+|                                 
T Consensus        93 ~~~~~~~~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd---------------------------------  137 (173)
T 3ocm_A           93 ADLITEGRVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD---------------------------------  137 (173)
T ss_dssp             HHHHHHSSCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC---------------------------------
T ss_pred             HHHhcCCcchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe---------------------------------
Confidence            76422 235677  568899999999999999999999999999999                                 


Q ss_pred             cccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCccc
Q 010540          363 LSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEY  439 (508)
Q Consensus       363 ~~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~~  439 (508)
                                                                     ++|+++||||.+||+++++| +|.||+|.+
T Consensus       138 -----------------------------------------------e~g~lvGiIT~~Dil~~l~~-~i~de~~~~  166 (173)
T 3ocm_A          138 -----------------------------------------------EFGAIEGLVTPIDVFEAIAG-EFPDEDELP  166 (173)
T ss_dssp             -----------------------------------------------TTCCEEEEECHHHHHHHHHC-CCCCTTSCC
T ss_pred             -----------------------------------------------CCCCEEEEEeHHHHHHHHhC-cCCCccccH
Confidence                                                           68999999999999999999 999998853

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.91  E-value=2.5e-24  Score=193.31  Aligned_cols=123  Identities=18%  Similarity=0.361  Sum_probs=99.1

Q ss_pred             cCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       205 ~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ++|.++++|++++++++.+.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|++.
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~   80 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYN   80 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHH
Confidence            35899999999999999999999999999988999999999999 99999999999999999875479999999999987


Q ss_pred             cCCCC-cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          285 VRPET-ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       285 ~~~~~-~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ..... ..+++++| +++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  125 (148)
T 3lv9_A           81 QKINENKIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVD  125 (148)
T ss_dssp             HHHHHSCCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHhcCCCccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe
Confidence            64333 57799998 9999999999999999999999999999999

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.90  E-value=1.9e-24  Score=195.38  Aligned_cols=148  Identities=28%  Similarity=0.437  Sum_probs=123.9

Q ss_pred             CCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEe-eCCCCcEEEEeEHhHHhccC
Q 010540          208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVY-SGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       208 ~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~-~~~~d~ivGiv~~kDll~~~  286 (508)
                      .++++|++++++++.+.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||+ +++.++++|+|+.+|++...
T Consensus         2 ~l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~   80 (153)
T 3oco_A            2 NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQA   80 (153)
T ss_dssp             ------CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHH
Confidence            36778999999999999999999999988999999999999 99999999999999999 55447999999999998754


Q ss_pred             CC-CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccc
Q 010540          287 PE-TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK  365 (508)
Q Consensus       287 ~~-~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i  365 (508)
                      .. ...+++++| +++.++++++++.++++.|.+++.+.+||+|                                    
T Consensus        81 ~~~~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd------------------------------------  123 (153)
T 3oco_A           81 RIDDKAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID------------------------------------  123 (153)
T ss_dssp             HHHTTSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC------------------------------------
T ss_pred             hcCCCCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe------------------------------------
Confidence            32 256799998 9999999999999999999999999999999                                    


Q ss_pred             ccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCcc
Q 010540          366 QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (508)
Q Consensus       366 ~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~  438 (508)
                                                                  ++|+++||||.+||+++++| +|.||+|.
T Consensus       124 --------------------------------------------~~g~~vGivt~~dil~~l~~-~~~de~~~  151 (153)
T 3oco_A          124 --------------------------------------------EYGGTSGIITDKDVYEELFG-NLRDEQDD  151 (153)
T ss_dssp             --------------------------------------------TTSCEEEEECHHHHHHHHHC---------
T ss_pred             --------------------------------------------CCCCEEEEeeHHHHHHHHhc-cCCCcccC
Confidence                                                        68999999999999999999 99999885

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.87  E-value=3e-22  Score=177.46  Aligned_cols=132  Identities=30%  Similarity=0.494  Sum_probs=109.8

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC---CCccccccccccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---ETETPVSAVSIRR  300 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~---~~~~~V~dim~~~  300 (508)
                      ++.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|++.+..   ....+++++| ++
T Consensus         1 ~~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m-~~   78 (136)
T 3lfr_A            1 ADLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL-RP   78 (136)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC-BC
T ss_pred             CCCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc-CC
Confidence            3678999999988999999999999 99999999999999999875479999999999997653   2346799997 55


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCC
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRP  380 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~  380 (508)
                      +.++++++++.++++.|.+++.+.+||+|                                                   
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---------------------------------------------------  107 (136)
T 3lfr_A           79 ATFVPESKRLNVLLREFRANHNHMAIVID---------------------------------------------------  107 (136)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCCEEEEEC---------------------------------------------------
T ss_pred             CeEECCCCcHHHHHHHHHhcCCeEEEEEe---------------------------------------------------
Confidence            88999999999999999999999999999                                                   


Q ss_pred             CccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCcc
Q 010540          381 LSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDE  438 (508)
Q Consensus       381 l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~  438 (508)
                                                   ++|+++||||.+||+++++| +|.||+|.
T Consensus       108 -----------------------------~~g~lvGiit~~Dil~~l~~-~~~de~~~  135 (136)
T 3lfr_A          108 -----------------------------EYGGVAGLVTIEDVLEQIVG-DIEDEHDV  135 (136)
T ss_dssp             -----------------------------TTSCEEEEEEHHHHHTTC-----------
T ss_pred             -----------------------------CCCCEEEEEEHHHHHHHHhC-CCcCcccC
Confidence                                         68999999999999999999 99999884

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.86  E-value=1.6e-21  Score=171.08  Aligned_cols=105  Identities=31%  Similarity=0.490  Sum_probs=94.9

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccce
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~  302 (508)
                      ..+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|++.+......+++++| +++.
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~v~~~m-~~~~   79 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLV-RPAV   79 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTSCGGGGC-BCCC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCcCHHHHh-CCCe
Confidence            46789999999988999999999999 999999999999999998755799999999999987665667899987 5688


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~v~~~~~l~~~~~~m~~~~~~~~pVvd  106 (129)
T 3jtf_A           80 FIPEVKRLNVLLREFRASRNHLAIVID  106 (129)
T ss_dssp             EEETTCBHHHHHHHHHTSSCCEEEEEC
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            999999999999999999999999999

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.85  E-value=1.9e-21  Score=171.05  Aligned_cols=103  Identities=20%  Similarity=0.357  Sum_probs=92.7

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----ccccccccccc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----ETPVSAVSIRR  300 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----~~~V~dim~~~  300 (508)
                      +.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|++++..++    ..+++++| ++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~~   78 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-DE   78 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-BC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-cC
Confidence            368999999988999999999999 9999999999999999976558999999999999765543    24688887 88


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  107 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVD  107 (130)
T ss_dssp             CCEEETTCBHHHHHHHHHHHCCCEEEEEC
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEc
Confidence            89999999999999999999999999999

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.84  E-value=2.1e-21  Score=176.81  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=90.6

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--------Cccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------TETPVS  294 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--------~~~~V~  294 (508)
                      |-..+++++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.+...        ...+++
T Consensus        12 ~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~   89 (156)
T 3k6e_A           12 FLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQEIMADTDIV   89 (156)
T ss_dssp             HHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGG
T ss_pred             HhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccccccccCHH
Confidence            44568999999999999999999999 99999999999999999865 899999999999764321        246799


Q ss_pred             ccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       295 dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++|.+++.++++++++.++++.|.+++  ++||+|
T Consensus        90 ~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd  122 (156)
T 3k6e_A           90 HMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVD  122 (156)
T ss_dssp             GTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEEC
T ss_pred             HhhcCCceecccccHHHHHHHHHHHcC--CeEEEe
Confidence            999999999999999999999998765  589999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.83  E-value=2.9e-21  Score=196.07  Aligned_cols=241  Identities=10%  Similarity=0.095  Sum_probs=179.9

Q ss_pred             CCChhHHHHHHHhhcC-cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          208 ELTHDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       208 ~l~~~E~~~i~~vl~l-~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      -++++|+++++++++| .+.+|+|+|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|++...
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G            3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHH
Confidence            3567889999999995 4599999999999999999999999 9999999999999999998668999999999998642


Q ss_pred             C--------CC------ccccc-------ccccccc--eeecCCCCHHHHHHHHHhCCCeEEEEEecCCC-----ccccC
Q 010540          287 P--------ET------ETPVS-------AVSIRRI--PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-----SKTLP  338 (508)
Q Consensus       287 ~--------~~------~~~V~-------dim~~~v--~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~-----i~Giv  338 (508)
                      .        ..      ..++.       ++|.+++  .++++++++.++++.|.+++.+.+||+|++|+     ++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Giv  161 (334)
T 2qrd_G           82 KYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVL  161 (334)
T ss_dssp             HHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEE
T ss_pred             HHHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEe
Confidence            1        11      12222       3466777  89999999999999999999999999999876     99999


Q ss_pred             CCCCCCccccccccCCC-CCCcccccccc-cccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEE
Q 010540          339 PMTDGKKPKLNEAKGGD-CDLTAPLLSKQ-DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIG  416 (508)
Q Consensus       339 ~~t~kDll~~i~~~~~~-~~l~~p~~~i~-~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvG  416 (508)
                        |.+|+++.+...... .....+..++. .+....+.++++.++.+..+.|..+..+...++     +    ++|+++|
T Consensus       162 --t~~dl~~~~~~~~~~~~~~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vv-----d----~~~~~~G  230 (334)
T 2qrd_G          162 --TQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIV-----N----SEGTLLN  230 (334)
T ss_dssp             --EHHHHHHHHHHHCGGGGGCCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEE-----C----TTCBEEE
T ss_pred             --eHHHHHHHHHhhccchhhhhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEE-----c----CCCcEEE
Confidence              999999776542211 01111211211 134567889999999999999887643322222     4    6799999


Q ss_pred             eechHHHHHHHhCCccCCCCcccccc-c--------eeEEeccccChHHHhhcC
Q 010540          417 IITLEDVFEELLQEEIVDETDEYVDV-H--------KRIRVAAAAAASSVARAP  461 (508)
Q Consensus       417 IVTleDIleeivg~eI~dE~d~~~~~-~--------~~~~v~~~~~~~~~~~~~  461 (508)
                      +||..|+++.+.+ +..+..+..... .        .-+.+...+++.++.+.+
T Consensus       231 iit~~dl~~~~~~-~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m  283 (334)
T 2qrd_G          231 VYESVDVMHLIQD-GDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAI  283 (334)
T ss_dssp             EEETHHHHHHHTT-SCGGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHH
T ss_pred             EEEHHHHHHHhhc-cccccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHH
Confidence            9999999998876 443222222111 1        236788888888876654

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.83  E-value=8e-21  Score=166.66  Aligned_cols=106  Identities=25%  Similarity=0.350  Sum_probs=91.9

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--Ccccccccccc
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIR  299 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--~~~~V~dim~~  299 (508)
                      +|.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|++.....  ...+++++| +
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m-~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVM-R   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHS-E
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHh-c
Confidence            477899999999988999999999999 999999999999999998755799999999999876432  246799998 6


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd  109 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVD  109 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEc
Confidence            788999999999999999999999999999

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.82  E-value=1e-19  Score=173.22  Aligned_cols=127  Identities=6%  Similarity=0.065  Sum_probs=113.0

Q ss_pred             ccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHc---CCcEE
Q 010540          187 FRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR---GHSRV  263 (508)
Q Consensus       187 ~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~---~~sr~  263 (508)
                      +.+++.+.++.          .++++|++++++++.+++.+|+++|++  +++++++++++. ++++.|.++   +++.+
T Consensus        25 l~~~~~~~~l~----------~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~   91 (205)
T 3kxr_A           25 LPESFTDRALA----------QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNL   91 (205)
T ss_dssp             SCHHHHHHHHH----------HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEE
T ss_pred             CCHHHHHHHHH----------cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEE
Confidence            44555566654          378999999999999999999999998  899999999999 999999987   78899


Q ss_pred             EEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          264 PVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       264 PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ||++++ ++++|+|+.+|++...  ...+++++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus        92 ~Vvd~~-~~lvGivt~~dll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD  154 (205)
T 3kxr_A           92 FIVDEA-DKYLGTVRRYDIFKHE--PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVID  154 (205)
T ss_dssp             EEECTT-CBEEEEEEHHHHTTSC--TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC
T ss_pred             EEEcCC-CeEEEEEEHHHHHhCC--CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc
Confidence            999865 8999999999998653  35679999989999999999999999999999999999999

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.82  E-value=3.3e-21  Score=195.48  Aligned_cols=241  Identities=12%  Similarity=0.191  Sum_probs=175.1

Q ss_pred             cCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          205 KGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       205 ~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      ..|.+.+.+++.+++.  |.+.+|+|+|+|+.++++++.++++. ++++.|.+++++++||++++.++++|+++.+|++.
T Consensus        16 ~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~   92 (330)
T 2v8q_E           16 HSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFIN   92 (330)
T ss_dssp             -------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHH
T ss_pred             HhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHH
Confidence            4566777777777776  57889999999999999999999999 99999999999999999987678999999999975


Q ss_pred             cCCC------------Ccc-------cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEec-CCCccccCCCCCCC
Q 010540          285 VRPE------------TET-------PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLPPMTDGK  344 (508)
Q Consensus       285 ~~~~------------~~~-------~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe-~g~i~Giv~~t~kD  344 (508)
                      ....            ...       .++++|.+++.++++++++.++++.|.+++.+.+||+|+ +|+++|++  |.+|
T Consensus        93 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Giv--t~~d  170 (330)
T 2v8q_E           93 ILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYIL--THKR  170 (330)
T ss_dssp             HHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEE--CHHH
T ss_pred             HHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEE--cHHH
Confidence            3210            011       234678899999999999999999999999999999999 99999999  9999


Q ss_pred             ccccccccCCCC---C-Cccccccccccc-CCceeecCCCCCccchhhhhcccCCCCcccccccc-cccccCCCceEEee
Q 010540          345 KPKLNEAKGGDC---D-LTAPLLSKQDEK-TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIY-ASEDIEDGEVIGII  418 (508)
Q Consensus       345 ll~~i~~~~~~~---~-l~~p~~~i~~~~-~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v-~~~~~E~G~lvGIV  418 (508)
                      +++.+.......   . ...+..++.-.. ...+.++++.++.+..+.|..+..+.      ++| +    ++|+++|+|
T Consensus       171 l~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~------~~Vvd----~~~~l~Gii  240 (330)
T 2v8q_E          171 ILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSA------LPVVD----EKGRVVDIY  240 (330)
T ss_dssp             HHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSE------EEEEC----TTSBEEEEE
T ss_pred             HHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCe------EEEEC----CCCcEEEEE
Confidence            998765432211   1 111111111122 56788999999999999888764332      333 4    689999999


Q ss_pred             chHHHHHHHhCCccCCCCccccc-c--------ceeEEeccccChHHHhhcC
Q 010540          419 TLEDVFEELLQEEIVDETDEYVD-V--------HKRIRVAAAAAASSVARAP  461 (508)
Q Consensus       419 TleDIleeivg~eI~dE~d~~~~-~--------~~~~~v~~~~~~~~~~~~~  461 (508)
                      |..|+++.+.+ ...+..+.... .        ..-+.+...+++.++.+.+
T Consensus       241 t~~dl~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m  291 (330)
T 2v8q_E          241 SKFDVINLAAE-KTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRL  291 (330)
T ss_dssp             EGGGTGGGGGS-SCCCCCSSBHHHHGGGCCSCCCSCCEECTTSBHHHHHHHH
T ss_pred             EHHHHHHHHhc-cccccccCcHHHHHhccccccCCCeEECCCCcHHHHHHHH
Confidence            99999998775 32222221111 1        1236778888887765544

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.82  E-value=4.3e-20  Score=161.30  Aligned_cols=104  Identities=30%  Similarity=0.467  Sum_probs=92.0

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--Ccccccccccccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRI  301 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--~~~~V~dim~~~v  301 (508)
                      ++.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++.++++|+++.+|+++....  ...+++++| +++
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m-~~~   78 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL-RTA   78 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC-BCC
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc-CCC
Confidence            3678999999977899999999999 999999999999999998754799999999999976432  346799997 567


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  106 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQRYHMAIVID  106 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEECCCCcHHHHHHHHHhcCCeEEEEEe
Confidence            8999999999999999999999999999

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.82  E-value=1.9e-21  Score=196.45  Aligned_cols=243  Identities=12%  Similarity=0.132  Sum_probs=182.7

Q ss_pred             CCCCChhHHHHHHHhhcC-cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc
Q 010540          206 GGELTHDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT  284 (508)
Q Consensus       206 ~g~l~~~E~~~i~~vl~l-~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~  284 (508)
                      .+.++++|+++++++++| .+.+|+|+|+|+.++++++.+.++. ++++.|.+++++++||++++.++++|+++.+|+..
T Consensus         9 ~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~   87 (323)
T 3t4n_C            9 QEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFIN   87 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHH
Confidence            456788999999999998 9999999999999999999999999 99999999999999999987679999999999986


Q ss_pred             cCC----C----------Ccccccc------cccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCC-----ccccCC
Q 010540          285 VRP----E----------TETPVSA------VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-----SKTLPP  339 (508)
Q Consensus       285 ~~~----~----------~~~~V~d------im~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~-----i~Giv~  339 (508)
                      ...    .          ....+.+      +|.++++++++++++.++++.|.+++.+.+||+|++|.     ++|++ 
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Giv-  166 (323)
T 3t4n_C           88 VIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVL-  166 (323)
T ss_dssp             HHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEE-
T ss_pred             HHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEe-
Confidence            421    0          0112333      34678899999999999999999999999999999987     99999 


Q ss_pred             CCCCCccccccccCCCC-CCccccccccc-ccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEe
Q 010540          340 MTDGKKPKLNEAKGGDC-DLTAPLLSKQD-EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGI  417 (508)
Q Consensus       340 ~t~kDll~~i~~~~~~~-~l~~p~~~i~~-~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGI  417 (508)
                       |.+|+++.+.+..... ....+..++.. +....+.++++.++.+..+.|..+..+...++     +    ++|+++|+
T Consensus       167 -t~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVv-----d----~~~~~~Gi  236 (323)
T 3t4n_C          167 -TQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII-----D----ENGYLINV  236 (323)
T ss_dssp             -EHHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEE-----C----TTCBEEEE
T ss_pred             -cHHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEE-----C----CCCeEEEE
Confidence             9999997765332211 11112222211 23567899999999999999987643332222     4    68999999


Q ss_pred             echHHHHHHHhCCccCCCCcccc-ccc--------eeEEeccccChHHHhhcC
Q 010540          418 ITLEDVFEELLQEEIVDETDEYV-DVH--------KRIRVAAAAAASSVARAP  461 (508)
Q Consensus       418 VTleDIleeivg~eI~dE~d~~~-~~~--------~~~~v~~~~~~~~~~~~~  461 (508)
                      ||..|+++.+.+ +..+..+... +..        .-+.+...+++.++.+.+
T Consensus       237 it~~dl~~~~~~-~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m  288 (323)
T 3t4n_C          237 YEAYDVLGLIKG-GIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNI  288 (323)
T ss_dssp             EETTHHHHHHHT-THHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHH
T ss_pred             EeHHHHHHHHhh-chhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHH
Confidence            999999998876 4432222111 111        237889999998876654

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.79  E-value=3.5e-20  Score=184.86  Aligned_cols=222  Identities=16%  Similarity=0.138  Sum_probs=170.1

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEE
Q 010540          185 ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP  264 (508)
Q Consensus       185 ~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~P  264 (508)
                      ..+|.+||...+..    ..   .    ..+...+.+++.+.+|+++|++  +++++++++++. ++++.|.+++++++|
T Consensus        63 GivT~~Di~~~~~~----~~---~----~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lp  128 (296)
T 3ddj_A           63 GLLTTRDLLSTVES----YC---K----DSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLP  128 (296)
T ss_dssp             EEEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEE
T ss_pred             EEEeHHHHHHHhcc----cc---c----ccccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEE
Confidence            45788887776531    00   0    0234455566678899999998  788999999998 999999999999999


Q ss_pred             EeeCCCCcEEEEeEHhHHhccCCC--CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCC
Q 010540          265 VYSGNPKNIIGLLLVKSLLTVRPE--TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTD  342 (508)
Q Consensus       265 V~~~~~d~ivGiv~~kDll~~~~~--~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~  342 (508)
                      |++++ ++++|+++.+|++.....  ...+++++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++  |.
T Consensus       129 Vvd~~-~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Giv--t~  205 (296)
T 3ddj_A          129 VVDIN-DKPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIV--TV  205 (296)
T ss_dssp             EECTT-SCEEEEEEHHHHGGGGGGSCCCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EH
T ss_pred             EEcCC-CcEEEEEeHHHHHHhhhcccccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEE--EH
Confidence            99865 889999999999875432  23579999999999999999999999999999999999999999999999  99


Q ss_pred             CCccccccccCCCCC-Ccccccccccc-cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeech
Q 010540          343 GKKPKLNEAKGGDCD-LTAPLLSKQDE-KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITL  420 (508)
Q Consensus       343 kDll~~i~~~~~~~~-l~~p~~~i~~~-~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTl  420 (508)
                      +|+++.+......-. .......+.+. ...++.++++.++.+..+.|..+..+...++     +    ++|+++|+||.
T Consensus       206 ~dl~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv-----d----~~g~~~Giit~  276 (296)
T 3ddj_A          206 VNAIKQLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL-----N----KDNTIRGIITE  276 (296)
T ss_dssp             HHHHHHHHHHHHHTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEE-----C----TTSCEEEEEEH
T ss_pred             HHHHHHHHHHHhhcChhhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-----C----CCCeEEEEEcH
Confidence            999977652111000 00000112222 3467889999999999999998754432222     4    78999999999


Q ss_pred             HHHHHHHhCCccC
Q 010540          421 EDVFEELLQEEIV  433 (508)
Q Consensus       421 eDIleeivg~eI~  433 (508)
                      .||++.+.+ ++.
T Consensus       277 ~Dil~~l~~-~~~  288 (296)
T 3ddj_A          277 RDLLIALHH-ILV  288 (296)
T ss_dssp             HHHHHHHHH-HHH
T ss_pred             HHHHHHHHH-Hhc
Confidence            999999986 543

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.78  E-value=5.6e-19  Score=162.34  Aligned_cols=112  Identities=16%  Similarity=0.251  Sum_probs=97.2

Q ss_pred             hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC--
Q 010540          212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET--  289 (508)
Q Consensus       212 ~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~--  289 (508)
                      .++..+.+.  +.+++|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+++.....  
T Consensus         6 ~~~~~~~~~--l~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~   79 (170)
T 4esy_A            6 ARRRAIARA--IRQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI   79 (170)
T ss_dssp             HHHHHHHHH--HHTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH
T ss_pred             HHHHHHHHH--HcCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc
Confidence            334445444  468899999997  899999999999 99999999999999999876 8999999999998654221  


Q ss_pred             ------------------------cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          290 ------------------------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       290 ------------------------~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                                              ..+++++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd  143 (170)
T 4esy_A           80 YEASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ  143 (170)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE
T ss_pred             cchhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE
Confidence                                    2468999999999999999999999999999999999998

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.78  E-value=9.4e-19  Score=174.07  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=107.6

Q ss_pred             CCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHc-----CCcEEEEeeCCCCcEEEEeEHhH
Q 010540          207 GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR-----GHSRVPVYSGNPKNIIGLLLVKS  281 (508)
Q Consensus       207 g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~-----~~sr~PV~~~~~d~ivGiv~~kD  281 (508)
                      +.++.+++..+.+++.+.+.+|+++|++  +++++++++++. ++++.|.++     +++++||++++ ++++|+|+.+|
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~d  191 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRD  191 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHH
Confidence            4678899999999999999999999998  899999999998 999999987     68999999875 89999999999


Q ss_pred             HhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          282 LLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       282 ll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++...  ...+++++|.+++++|++++++.++++.|++++.+.+||+|
T Consensus       192 ll~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  237 (278)
T 2yvy_A          192 LIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  237 (278)
T ss_dssp             HHHSC--TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhcCC--CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe
Confidence            98653  35679999989999999999999999999999999999999

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.76  E-value=9.7e-20  Score=179.35  Aligned_cols=220  Identities=14%  Similarity=0.172  Sum_probs=163.6

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEE
Q 010540          185 ALFRRAQLKALVTIHSQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVP  264 (508)
Q Consensus       185 ~~~s~eEL~~lv~~~~~e~~~~g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~P  264 (508)
                      ..+|.+||...+...    ...+.+...+   ..+++...+.+|+++|++  +++++++++++. ++++.|.+++++++|
T Consensus        50 Givt~~di~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~  119 (280)
T 3kh5_A           50 GIITSMDIVDFMGGG----SKYNLIREKH---ERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAP  119 (280)
T ss_dssp             EEEEHHHHHHHTTTS----GGGHHHHTTS---TTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEE
T ss_pred             EEEEHHHHHHHhccc----chhhhhhhcc---ccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEE
Confidence            457888988866311    1111111111   122333447899999997  888999999999 999999999999999


Q ss_pred             EeeCCCCcEEEEeEHhHHhccCCC---CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCC
Q 010540          265 VYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMT  341 (508)
Q Consensus       265 V~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t  341 (508)
                      |++++ ++++|+++.+|++.....   ...+++++|.+++.++++++++.++++.|.+++.+.+||+ ++|+++|++  |
T Consensus       120 Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Giv--t  195 (280)
T 3kh5_A          120 IVNDE-NQLISLITERDVIRALLDKIDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGII--T  195 (280)
T ss_dssp             EECTT-CBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEE--E
T ss_pred             EEcCC-CEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEE--E
Confidence            99875 899999999999875332   2347999998999999999999999999999999999999 789999999  9


Q ss_pred             CCCccccccccCCCCC-----Cc-ccccccccc-cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCce
Q 010540          342 DGKKPKLNEAKGGDCD-----LT-APLLSKQDE-KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEV  414 (508)
Q Consensus       342 ~kDll~~i~~~~~~~~-----l~-~p~~~i~~~-~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~l  414 (508)
                      .+|+++.+........     .. .....+.+. ...++.++++.++.+..+.|..+..+...++     +    ++|++
T Consensus       196 ~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv-----d----~~g~~  266 (280)
T 3kh5_A          196 STDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVV-----D----ENLRI  266 (280)
T ss_dssp             HHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEE-----C----TTCBE
T ss_pred             HHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEE-----C----CCCeE
Confidence            9999977643211000     00 000112222 3567889999999999999998765443333     4    67899


Q ss_pred             EEeechHHHHHHH
Q 010540          415 IGIITLEDVFEEL  427 (508)
Q Consensus       415 vGIVTleDIleei  427 (508)
                      +|+||..||++.+
T Consensus       267 ~Givt~~dil~~l  279 (280)
T 3kh5_A          267 KGIITEKDVLKYF  279 (280)
T ss_dssp             EEEEEHHHHGGGG
T ss_pred             EEEEeHHHHHHhh
Confidence            9999999999875

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.76  E-value=3.7e-18  Score=182.13  Aligned_cols=134  Identities=14%  Similarity=0.135  Sum_probs=119.1

Q ss_pred             cccHHHHHHHHHHhhhhhccC---------CCCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHH
Q 010540          186 LFRRAQLKALVTIHSQEAGKG---------GELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL  256 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~~---------g~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~  256 (508)
                      .++.+|+..+++..    .++         +.++++|++.+++++++++.+|+++|++  +++++++++++. ++++.+.
T Consensus       110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            46778888888632    233         6899999999999999999999999998  899999999999 9999999


Q ss_pred             Hc-----CCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          257 AR-----GHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       257 ~~-----~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++     +++++||++++ ++++|+++.+|++...  .+.+++++|.+++.+|+++++++++++.|++++.+.+||+|
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~--~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD  257 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD--PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD  257 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHSC--TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEHHHHhcCC--CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc
Confidence            86     47899999875 8999999999999753  35689999989999999999999999999999999999999

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.76  E-value=1.5e-18  Score=170.83  Aligned_cols=181  Identities=14%  Similarity=0.202  Sum_probs=148.2

Q ss_pred             cccc-ccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC----------------
Q 010540          227 TAEE-AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET----------------  289 (508)
Q Consensus       227 ~V~d-IMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~----------------  289 (508)
                      ++++ +|++  +++++++++++. ++++.|.+++++++||++++.++++|+++.+|++......                
T Consensus         4 ~v~~~i~~~--~~~~v~~~~sl~-~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 3kh5_A            4 RVMKIAQNK--KIVTVYPTTTIR-KALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLA   80 (280)
T ss_dssp             BGGGTSCCS--CCCCBCTTSBHH-HHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHH
T ss_pred             hHHHHhcCC--CcEEECCCCcHH-HHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhH
Confidence            3444 5565  899999999999 9999999999999999987458999999999998764321                


Q ss_pred             --cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          290 --ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       290 --~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                        +.+++++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++  |.+|+++.+.+......      .+.+
T Consensus        81 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Giv--t~~dl~~~~~~~~~~~~------~v~~  152 (280)
T 3kh5_A           81 AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLI--TERDVIRALLDKIDENE------VIDD  152 (280)
T ss_dssp             HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEE--EHHHHHHHHGGGSCTTC------BSGG
T ss_pred             HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEE--EHHHHHHHHhhcCCCCC------CHHH
Confidence              3479999999999999999999999999999999999999999999999  99999987765443221      1222


Q ss_pred             c-cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHh
Q 010540          368 E-KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (508)
Q Consensus       368 ~-~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeiv  428 (508)
                      . ....++++++.++.+..+.|..+..+.      ++|.    ++|+++|+||.+|+++.+.
T Consensus       153 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~------~~Vv----~~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          153 YITRDVIVATPGERLKDVARTMVRNGFRR------LPVV----SEGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             GCBCSCCCBCTTCBHHHHHHHHHHHTCSE------EEEE----ETTEEEEEEEHHHHHHHHT
T ss_pred             HhCCCCeEECCCCcHHHHHHHHHHcCCCE------EEEE----ECCEEEEEEEHHHHHHHHh
Confidence            2 356788999999999999998775433      3332    4799999999999999875

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.73  E-value=5.9e-18  Score=168.68  Aligned_cols=215  Identities=19%  Similarity=0.171  Sum_probs=166.8

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-------------
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-------------  288 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-------------  288 (508)
                      +....+|+|+|++  +++++++++++. ++++.|.+++++++||++   ++++|+++.+|++.....             
T Consensus        16 ~~~~~~V~dim~~--~~~~v~~~~~v~-~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~   89 (296)
T 3ddj_A           16 YFQGMNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYH   89 (296)
T ss_dssp             TTCCSSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHH
T ss_pred             hhcccCHHHhccC--CCcEECCCccHH-HHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccccccchhhHH
Confidence            4567899999998  888999999999 999999999999999997   789999999999976532             


Q ss_pred             -CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          289 -TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       289 -~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                       ...+++++|.+++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++.+.+.....       .+.+
T Consensus        90 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGiv--t~~dl~~~~~~~~~~~-------~v~~  160 (296)
T 3ddj_A           90 ISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIV--TEREFLLLYKDLDEIF-------PVKV  160 (296)
T ss_dssp             HHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHGGGGGGSCCCC-------BHHH
T ss_pred             HhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE--eHHHHHHhhhcccccc-------cHHH
Confidence             13579999999999999999999999999999999999999999999999  9999998765433221       1222


Q ss_pred             c-cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCC-----cccc-
Q 010540          368 E-KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDET-----DEYV-  440 (508)
Q Consensus       368 ~-~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~-----d~~~-  440 (508)
                      . ......++++.++.+..+.|..+..+...++     +    ++|+++|+||.+|+++.+.. .+.+-.     +... 
T Consensus       161 ~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vv-----d----~~~~~~Givt~~dl~~~~~~-~~~~~~~~~~~~~~v~  230 (296)
T 3ddj_A          161 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVI-----D----DDNKVVGIVTVVNAIKQLAK-AVDKLDPDYFYGKVVK  230 (296)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEE-----C----TTSCEEEEEEHHHHHHHHHH-HHHHTCTHHHHTCBHH
T ss_pred             hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEE-----c----CCCEEEEEEEHHHHHHHHHH-HHhhcChhhhcCcCHH
Confidence            2 3556789999999999999987754333333     4    78999999999999998762 221100     0011 


Q ss_pred             ccc--eeEEeccccChHHHhhcC
Q 010540          441 DVH--KRIRVAAAAAASSVARAP  461 (508)
Q Consensus       441 ~~~--~~~~v~~~~~~~~~~~~~  461 (508)
                      +..  .-+.+...+++.++.+.+
T Consensus       231 ~~m~~~~~~v~~~~~l~~a~~~m  253 (296)
T 3ddj_A          231 DVMVTNLVTIDELASVNRAAAEM  253 (296)
T ss_dssp             HHSBCCCCBCCTTSBHHHHHHHH
T ss_pred             HHhCCCCeEECCCCcHHHHHHHH
Confidence            111  136677888887776554

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.70  E-value=6.3e-17  Score=145.83  Aligned_cols=108  Identities=19%  Similarity=0.228  Sum_probs=91.3

Q ss_pred             HHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---------
Q 010540          218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------  288 (508)
Q Consensus       218 ~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------  288 (508)
                      ++...+.+.+|+++|+|+.+++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....         
T Consensus         3 ~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            3 WEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             -------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             hhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHHh
Confidence            4455678899999999877888999999999 99999999999999999865 789999999999876543         


Q ss_pred             CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          289 TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       289 ~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ...++.++|.+++.++++++++.++++.|.+++.  +||+|
T Consensus        81 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd  119 (157)
T 2emq_A           81 ETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN  119 (157)
T ss_dssp             GTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC
T ss_pred             cCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc
Confidence            2467999999999999999999999999999876  88998

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.70  E-value=1.1e-16  Score=159.83  Aligned_cols=116  Identities=18%  Similarity=0.194  Sum_probs=107.1

Q ss_pred             CCChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHc-----CCcEEEEeeCCCCcEEEEeEHhHH
Q 010540          208 ELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILAR-----GHSRVPVYSGNPKNIIGLLLVKSL  282 (508)
Q Consensus       208 ~l~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~-----~~sr~PV~~~~~d~ivGiv~~kDl  282 (508)
                      .++.+|+..+.+++.+.+.+|+++|++  +++++++++++. ++++.|.++     +++++||++++ ++++|+|+.+|+
T Consensus       119 ~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dl  194 (286)
T 2oux_A          119 LLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDL  194 (286)
T ss_dssp             TSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHH
T ss_pred             cCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHH
Confidence            578889999999999999999999997  889999999999 999999987     88999999875 899999999999


Q ss_pred             hccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          283 LTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       283 l~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +...  ...+++++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus       195 l~~~--~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd  239 (286)
T 2oux_A          195 IVND--DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD  239 (286)
T ss_dssp             TTSC--TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HcCC--CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc
Confidence            8753  35679999989999999999999999999999999999999

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.70  E-value=6.2e-17  Score=159.72  Aligned_cols=191  Identities=16%  Similarity=0.189  Sum_probs=143.5

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc-cCCCC----ccccccccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRPET----ETPVSAVSI  298 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~-~~~~~----~~~V~dim~  298 (508)
                      .+.+++++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++. ....+    ..+++++|.
T Consensus        58 ~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~  133 (282)
T 2yzq_A           58 DEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQ  133 (282)
T ss_dssp             ------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSB
T ss_pred             ccCCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccCCcccCcHHHHhC
Confidence            35789999997  678899999998 99999999999999999875 78999999999998 65432    467899998


Q ss_pred             ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcc------cccc------cc-------CCC----
Q 010540          299 RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP------KLNE------AK-------GGD----  355 (508)
Q Consensus       299 ~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll------~~i~------~~-------~~~----  355 (508)
                      +++.++++++++.++++.|.+++.+.+||+|++|.++|++  +.+|++      +...      ..       ...    
T Consensus       134 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Gii--t~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (282)
T 2yzq_A          134 RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIV--DETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLF  211 (282)
T ss_dssp             SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEE--EGGGGGGCGGGCC-------------------------
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEE--EHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHH
Confidence            8999999999999999999999999999999999999999  999998      3331      00       000    


Q ss_pred             --CCCcccccccccc-cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          356 --CDLTAPLLSKQDE-KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       356 --~~l~~p~~~i~~~-~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                        .....+...+.+. ...+..++++.++.+..+.|..+..+...++     +    ++|+++|+||..||++.+..
T Consensus       212 ~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv-----d----~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          212 EKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVI-----R----GEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             -------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEE-----E----TTTEEEEEEEHHHHGGGGCC
T ss_pred             hHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEE-----C----CCCCEEEEEeHHHHHHHHHh
Confidence              0000011122222 3566789999999999999987754432222     3    56899999999999988753

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.70  E-value=7.4e-17  Score=143.90  Aligned_cols=104  Identities=19%  Similarity=0.173  Sum_probs=92.5

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC----------------
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----------------  287 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~----------------  287 (508)
                      ...+|+++|+|+.+++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++....                
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~   80 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS   80 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence            4578999999977899999999999 99999999999999999875 79999999999986421                


Q ss_pred             -CCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          288 -ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       288 -~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                       ....++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd  123 (152)
T 4gqw_A           81 KTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD  123 (152)
T ss_dssp             ---CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC
T ss_pred             HhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC
Confidence             123679999988899999999999999999999999999999

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.69  E-value=9.8e-18  Score=165.48  Aligned_cols=177  Identities=18%  Similarity=0.197  Sum_probs=127.3

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeec
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~  305 (508)
                      ++|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....  ..+++++|.+++.+++
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~--~~~v~~~m~~~~~~v~   74 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CchHHhccC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc--cCCHHHHcCCCCcEEC
Confidence            368999996  888999999999 99999999999999999864 89999999999986543  4578999888889999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccc-cccccCCCCCCccccccccc-ccCCceeecCCCCCcc
Q 010540          306 SDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPK-LNEAKGGDCDLTAPLLSKQD-EKTESVVVDVDRPLSS  383 (508)
Q Consensus       306 ~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~-~i~~~~~~~~l~~p~~~i~~-~~~~~~~V~~~~~l~~  383 (508)
                      +++++.++++.|.+++.+.+||+|++|+++|++  |.+|+++ .+.+.....     ...+.+ +...++.++++.++.+
T Consensus        75 ~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Gii--t~~di~~~~~~~~~~~~-----~~~v~~~m~~~~~~v~~~~~l~~  147 (282)
T 2yzq_A           75 ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGIL--TVGDIIRRYFAKSEKYK-----GVEIEPYYQRYVSIVWEGTPLKA  147 (282)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHHHHTTTTCSGGG-----GCBSTTTSBSCCCCEETTSBHHH
T ss_pred             CCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEE--EHHHHHHHHHhccCCcc-----cCcHHHHhCCCCEEECCCCCHHH
Confidence            999999999999999999999999999999999  9999998 665431110     111222 2356789999999999


Q ss_pred             chhhhhcccCCCCcccccccc-cccccCCCceEEeechHHHHH
Q 010540          384 GSMNRLSSSQRSDSTTNGLIY-ASEDIEDGEVIGIITLEDVFE  425 (508)
Q Consensus       384 ~~~~~~~~~~~~~~~i~~l~v-~~~~~E~G~lvGIVTleDIle  425 (508)
                      ..+.|..+..+      +++| +    ++|+++|+||..|+++
T Consensus       148 ~~~~~~~~~~~------~l~Vvd----~~~~~~Giit~~dl~~  180 (282)
T 2yzq_A          148 ALKALLLSNSM------ALPVVD----SEGNLVGIVDETDLLR  180 (282)
T ss_dssp             HHHHHHTCSSS------EEEEEC----TTSCEEEEEEGGGGGG
T ss_pred             HHHHHHHcCCc------EEEEEc----CCCeEEEEEEHHHHhh
Confidence            99988876432      2333 4    6899999999999984

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.69  E-value=1.8e-16  Score=139.59  Aligned_cols=104  Identities=13%  Similarity=0.235  Sum_probs=91.8

Q ss_pred             hcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc-cCCC---Cccccccc
Q 010540          221 LDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRPE---TETPVSAV  296 (508)
Q Consensus       221 l~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~-~~~~---~~~~V~di  296 (508)
                      +.|.+.+|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++. ....   ...++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCCcccCCHHHH
Confidence            46788999999986  888999999999 99999999999999999865 89999999999973 3322   24679999


Q ss_pred             ccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       297 m~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      |.+++.++++++++.++++.|.+++.+.+ |+|
T Consensus        78 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd  109 (138)
T 2yzi_A           78 MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIE  109 (138)
T ss_dssp             CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE
T ss_pred             hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC
Confidence            98999999999999999999999999988 998

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.69  E-value=1.7e-17  Score=167.52  Aligned_cols=187  Identities=16%  Similarity=0.177  Sum_probs=145.1

Q ss_pred             cccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCC----cEEEEeEHhHHhccCC-------CCccccccc
Q 010540          228 AEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK----NIIGLLLVKSLLTVRP-------ETETPVSAV  296 (508)
Q Consensus       228 V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d----~ivGiv~~kDll~~~~-------~~~~~V~di  296 (508)
                      +.++|++  +++++++++++. ++++.|.+++++++||++++.+    +++|+++.+|++....       ....+++++
T Consensus       116 ~~~~~~~--~~v~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~~~  192 (323)
T 3t4n_C          116 ALGVDQL--DTASIHPSRPLF-EACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDL  192 (323)
T ss_dssp             HTTC------CCCBCTTSBHH-HHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGGGT
T ss_pred             HhCCCCC--CceEeCCCCcHH-HHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHHHc
Confidence            4556665  788999999998 9999999999999999986522    3999999999986421       123578898


Q ss_pred             ---ccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccccc----
Q 010540          297 ---SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK----  369 (508)
Q Consensus       297 ---m~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~----  369 (508)
                         |.+++.++++++++.++++.|.+++.+.+||+|++|+++|++  |.+|+++.+.+.... ....+..++....    
T Consensus       193 ~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Gii--t~~dl~~~~~~~~~~-~~~~~v~~~m~~~~~~~  269 (323)
T 3t4n_C          193 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY--EAYDVLGLIKGGIYN-DLSLSVGEALMRRSDDF  269 (323)
T ss_dssp             TCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--ETTHHHHHHHTTHHH-HTTSBHHHHGGGSCTTC
T ss_pred             CCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEE--eHHHHHHHHhhchhh-hccCCHHHHHhhccccC
Confidence               888999999999999999999999999999999999999999  999999877543211 1111222222211    


Q ss_pred             CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ...+.++++.++.+..+.|..+..+...++     +    ++|+++|+||..||++.+++
T Consensus       270 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-----d----~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          270 EGVYTCTKNDKLSTIMDNIRKARVHRFFVV-----D----DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             CCCEEECTTCBHHHHHHHHHHSCCCEEEEE-----C----TTSBEEEEEEHHHHHHHHHH
T ss_pred             CCCEEECCCCCHHHHHHHHHHhCCCEEEEE-----C----CCCcEEEEEEHHHHHHHHHh
Confidence            157899999999999999998755443333     4    78999999999999999987

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.69  E-value=5e-17  Score=140.00  Aligned_cols=100  Identities=11%  Similarity=0.227  Sum_probs=91.4

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeec
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~  305 (508)
                      .+|+++|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++........+++++|.+++.+++
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~v~~~~~~~~~~v~   76 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNKKTIEEIMTRNVITAH   76 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTCCBGGGTSBSSCCCEE
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcccCHHHHhcCCCeEEC
Confidence            378999997  788999999999 99999999999999999865 89999999999997755555689999989999999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       306 ~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~~l~~~~~~~~~~~~~~l~Vvd  100 (122)
T 3kpb_A           77 EDEPVDHVAIKMSKYNISGVPVVD  100 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCCCHHHHHHHHHHhCCCeEEEEC
Confidence            999999999999999999999999

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.69  E-value=4.2e-17  Score=145.95  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=92.7

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---------Cccc
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETP  292 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------~~~~  292 (508)
                      .|.+.+|+++|+|..+++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++.....         ...+
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~   88 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEMK   88 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGCB
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcCC
Confidence            467789999999877899999999999 99999999999999999865 899999999999876532         2467


Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++|.+++.++++++++.++++.|.+++.  +||+|
T Consensus        89 v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd  123 (150)
T 3lqn_A           89 VEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN  123 (150)
T ss_dssp             GGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC
T ss_pred             HHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC
Confidence            999999999999999999999999998886  89998

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.68  E-value=7.6e-17  Score=147.16  Aligned_cols=110  Identities=12%  Similarity=0.174  Sum_probs=97.1

Q ss_pred             HHhhcCcccccccccccc-cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----Ccc
Q 010540          218 SGALDLTEKTAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TET  291 (508)
Q Consensus       218 ~~vl~l~~~~V~dIMtpr-~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~  291 (508)
                      +....+...+|+++|+|+ .+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++....     ...
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~   93 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQ   93 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTS
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccC
Confidence            345568889999999984 5688999999999 99999999999999999865 789999999999865321     246


Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        94 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  131 (165)
T 3fhm_A           94 SVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE  131 (165)
T ss_dssp             BGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            79999999999999999999999999999999999999

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.67  E-value=2e-16  Score=137.93  Aligned_cols=101  Identities=14%  Similarity=0.194  Sum_probs=91.9

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc---cccccccccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE---TPVSAVSIRR  300 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~---~~V~dim~~~  300 (508)
                      .+.+|+++|++  ++.++++++++. ++++.|.+++++.+||+++  ++++|+++.+|+.+...++.   .+++++|.++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCcccCcHHHHccCC
Confidence            46799999997  788899999999 9999999999999999986  89999999999998765432   5699999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd  106 (128)
T 3gby_A           78 VRSYRPGEQLFDNLISVAAAKCSVVPLAD  106 (128)
T ss_dssp             CCCBCTTSBGGGSHHHHHHCSSSEEEEEC
T ss_pred             CcEECCCCCHHHHHHHHHhCCCcEEEEEC
Confidence            99999999999999999999999999999

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.67  E-value=3e-16  Score=137.35  Aligned_cols=102  Identities=16%  Similarity=0.236  Sum_probs=91.5

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---Ccccccccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIR  299 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~  299 (508)
                      |++.+|+++|++  ++.++++++++. ++++.|.+++++.+||++ + ++++|+++.+|++.....   ...+++++|.+
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            467899999998  788999999998 999999999999999998 4 799999999999865322   24679999988


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd  105 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVD  105 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence            999999999999999999999999999999

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.66  E-value=2.2e-16  Score=145.25  Aligned_cols=103  Identities=17%  Similarity=0.198  Sum_probs=91.9

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC------------------
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR------------------  286 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~------------------  286 (508)
                      ..+|+++|+|+.+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++...                  
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVD-DALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            468999999987899999999999 99999999999999999875 7999999999998532                  


Q ss_pred             -------------CCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          287 -------------PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       287 -------------~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                                   .....+++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  136 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD  136 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC
T ss_pred             hhhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC
Confidence                         1124579999988899999999999999999999999999999

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.66  E-value=3.2e-16  Score=138.85  Aligned_cols=99  Identities=11%  Similarity=0.186  Sum_probs=89.4

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCC--cEEEEeEHhHHhccCCC---Cccccccccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPK--NIIGLLLVKSLLTVRPE---TETPVSAVSIRR  300 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d--~ivGiv~~kDll~~~~~---~~~~V~dim~~~  300 (508)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ +  +++|+++.+|++.....   ...++.++|.++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCC
Confidence            689999997  889999999999 99999999999999999875 5  89999999999875322   246799999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.+++++ ++.++++.|.+++.+.+||+|
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd  108 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVN  108 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEc
Confidence            9999999 999999999999999999999

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.65  E-value=2e-16  Score=141.73  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=92.9

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Ccccccccccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v  301 (508)
                      .+|+++|+|+.+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++....    ...+++++|.+++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCC
Confidence            58999999877889999999999 99999999999999999865 899999999999875433    3467999998999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++++++++.++++.|.+++.+.+||+|
T Consensus       106 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd  133 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLMQSRHITCVLVAD  133 (149)
T ss_dssp             CEECTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEECCCCCHHHHHHHHHHcCCCEEEEec
Confidence            9999999999999999999999999999

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.65  E-value=5.6e-16  Score=136.33  Aligned_cols=103  Identities=17%  Similarity=0.318  Sum_probs=91.3

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHH-hccCCC---Cccccccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL-LTVRPE---TETPVSAVSI  298 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDl-l~~~~~---~~~~V~dim~  298 (508)
                      |.+.+|+++|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+ ......   ...+++++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKYTLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCcCHHHHhC
Confidence            568899999987  788899999998 99999999999999999865 789999999999 765432   2467999998


Q ss_pred             ccceeecCCCCHHHHHHHHHhCC-----CeEEEEEe
Q 010540          299 RRIPRVPSDMPLYDILNEFQKGS-----SHMAAVVK  329 (508)
Q Consensus       299 ~~v~~V~~~~~l~d~L~~m~~~~-----~~~a~VvD  329 (508)
                      +++.++++++++.++++.|.+++     .+.+||+|
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd  116 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD  116 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC
Confidence            89999999999999999999999     99999999

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.65  E-value=2.3e-16  Score=142.77  Aligned_cols=104  Identities=18%  Similarity=0.260  Sum_probs=91.8

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---------Cccc
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETP  292 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------~~~~  292 (508)
                      .+.+.+|+++|+++.+++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++.....         ...+
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQIT   87 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSB
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCC
Confidence            577899999999877889999999999 99999999999999999875 799999999999875422         2467


Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++|.+++.++++++++.++++.|.+++.  +||+|
T Consensus        88 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd  122 (159)
T 1yav_A           88 VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEN  122 (159)
T ss_dssp             HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC
T ss_pred             HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe
Confidence            999998999999999999999999998876  89998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.64  E-value=2.1e-16  Score=160.07  Aligned_cols=188  Identities=16%  Similarity=0.184  Sum_probs=147.0

Q ss_pred             ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----------Cccccccc
Q 010540          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------TETPVSAV  296 (508)
Q Consensus       227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----------~~~~V~di  296 (508)
                      +++++|++  +++++++++++. ++++.|.+++++++||++++.++++|+++.+|++.....          ...+++++
T Consensus       119 ~~~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~  195 (330)
T 2v8q_E          119 VYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEEL  195 (330)
T ss_dssp             HHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHH
T ss_pred             HHhhcccC--CceEeCCCCCHH-HHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHh
Confidence            46788986  788999999999 999999999999999998623889999999999865321          11334444


Q ss_pred             --cc-ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccc----cc
Q 010540          297 --SI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD----EK  369 (508)
Q Consensus       297 --m~-~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~----~~  369 (508)
                        |. +++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++...+.... ....+..++..    +.
T Consensus       196 ~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Gii--t~~dl~~~~~~~~~~-~~~~~v~~~~~~~~~~~  272 (330)
T 2v8q_E          196 QIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY--SKFDVINLAAEKTYN-NLDVSVTKALQHRSHYF  272 (330)
T ss_dssp             TCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEE--EGGGTGGGGGSSCCC-CCSSBHHHHGGGCCSCC
T ss_pred             cccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEE--EHHHHHHHHhccccc-cccCcHHHHHhcccccc
Confidence              43 7888999999999999999999999999999999999999  999999877644221 11122222221    13


Q ss_pred             CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ...++++++.++.+..+.|..+..+...++     +    ++|+++|+||..||++.+..
T Consensus       273 ~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv-----d----~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          273 EGVLKCYLHETLEAIINRLVEAEVHRLVVV-----D----EHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             CSCCEECTTSBHHHHHHHHHHHTCSEEEEE-----C----TTSBEEEEEEHHHHHHHHHS
T ss_pred             CCCeEECCCCcHHHHHHHHHHCCCcEEEEE-----c----CCCcEEEEEeHHHHHHHHHh
Confidence            678899999999999999988754443333     4    67999999999999999874

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.64  E-value=7.3e-16  Score=135.34  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=89.6

Q ss_pred             ccccccccc-cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhc-cCC----CCccccccccccc
Q 010540          227 TAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLT-VRP----ETETPVSAVSIRR  300 (508)
Q Consensus       227 ~V~dIMtpr-~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~-~~~----~~~~~V~dim~~~  300 (508)
                      +|+++|+|+ .+++++++++++. ++++.|.+++++.+||++ + ++++|+++.+|++. ...    ....++.++|.++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~   83 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQ   83 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCS
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCC
Confidence            899999965 6889999999999 999999999999999998 4 79999999999985 222    1346899999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  112 (135)
T 2rc3_A           84 VAYVDLNNTNEDCMALITEMRVRHLPVLD  112 (135)
T ss_dssp             CCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CeEECCCCcHHHHHHHHHHhCCCEEEEEe
Confidence            99999999999999999999999999998

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.64  E-value=8.2e-16  Score=138.71  Aligned_cols=101  Identities=11%  Similarity=0.156  Sum_probs=90.3

Q ss_pred             cccccccccc----cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----Cccccccc
Q 010540          226 KTAEEAMTPI----ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAV  296 (508)
Q Consensus       226 ~~V~dIMtpr----~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~V~di  296 (508)
                      .+|+++|+|+    .+++++++++++. ++++.|.+++++.+||.+  .++++|+++.+|+++....     ...+++++
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   83 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEI   83 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHH
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHH
Confidence            5799999986    6789999999999 999999999999999964  3899999999999875422     34679999


Q ss_pred             ccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       297 m~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      |.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        84 m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  116 (157)
T 4fry_A           84 MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD  116 (157)
T ss_dssp             SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            999999999999999999999999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.63  E-value=1.6e-16  Score=161.05  Aligned_cols=188  Identities=12%  Similarity=0.111  Sum_probs=146.7

Q ss_pred             ccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCc----EEEEeEHhHHhccCCC-------Ccccccc--
Q 010540          229 EEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKN----IIGLLLVKSLLTVRPE-------TETPVSA--  295 (508)
Q Consensus       229 ~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~----ivGiv~~kDll~~~~~-------~~~~V~d--  295 (508)
                      +++|++..+++++++++++. ++++.|.+++++++||++++.++    ++|+++.+|++.....       ...++++  
T Consensus       110 ~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~  188 (334)
T 2qrd_G          110 RKIGAIPPETIYVHPMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMT  188 (334)
T ss_dssp             HHHTCSCSSCCCBCTTSBHH-HHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSS
T ss_pred             HhhccCCCceeeeCCCCcHH-HHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhC
Confidence            45787655568899999998 99999999999999999865344    9999999999865321       1356888  


Q ss_pred             -cccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccccc----C
Q 010540          296 -VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK----T  370 (508)
Q Consensus       296 -im~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~----~  370 (508)
                       +|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++  |.+|+++.+.+.... ....+..++....    .
T Consensus       189 ~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Gii--t~~dl~~~~~~~~~~-~~~~~v~~~m~~~~~~~~  265 (334)
T 2qrd_G          189 IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVY--ESVDVMHLIQDGDYS-NLDLSVGEALLKRPANFD  265 (334)
T ss_dssp             CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--ETHHHHHHHTTSCGG-GGGSBHHHHHTTCCTTCC
T ss_pred             CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEE--EHHHHHHHhhccccc-cccCcHHHHHhcccccCC
Confidence             4788999999999999999999999999999999999999999  999999876543211 1111111111110    3


Q ss_pred             CceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          371 ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       371 ~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      .+++++++.++.+..+.|..+..+...++     +    ++|+++|+||..||++.+.+
T Consensus       266 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-----d----~~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          266 GVHTCRATDRLDGIFDAIKHSRVHRLFVV-----D----ENLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             CCCEECTTCBHHHHHHHHHHSCCCEEEEE-----C----TTCBEEEEEEHHHHHHHHHS
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEE-----C----CCCeEEEEEeHHHHHHHHHh
Confidence            67899999999999999988754433232     4    68999999999999999986

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.63  E-value=1e-15  Score=138.41  Aligned_cols=102  Identities=21%  Similarity=0.272  Sum_probs=91.2

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcE-EEEeeCCCCcEEEEeEHhHHhccC--------------
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSR-VPVYSGNPKNIIGLLLVKSLLTVR--------------  286 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr-~PV~~~~~d~ivGiv~~kDll~~~--------------  286 (508)
                      .+...+|+++|++  +++++++++++. ++++.|.+++++. +||++++  +++|+++.+|++...              
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            4677899999997  889999999999 9999999999999 9999874  899999999998642              


Q ss_pred             -----CCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          287 -----PETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       287 -----~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                           .....+++++|.+ +.++++++++.++++.|.+++.+.+||+|
T Consensus        87 ~~~~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  133 (157)
T 1o50_A           87 RSSMKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD  133 (157)
T ss_dssp             --CCCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc
Confidence                 1234679999888 89999999999999999999999999999

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.62  E-value=1.7e-15  Score=137.33  Aligned_cols=102  Identities=18%  Similarity=0.219  Sum_probs=90.6

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC----CCccccccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVSI  298 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~----~~~~~V~dim~  298 (508)
                      +.+.+|+++|++  . +++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....    ....+++++|.
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~   88 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMT   88 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHc
Confidence            467899999985  4 4899999999 99999999999999999865 89999999999987532    13468999998


Q ss_pred             c--cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          299 R--RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       299 ~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +  ++.++++++++.++++.|.+++.+.+||+|
T Consensus        89 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  121 (159)
T 3fv6_A           89 RMPNITVCRREDYVMDIAKHLIEKQIDALPVIK  121 (159)
T ss_dssp             ETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe
Confidence            7  889999999999999999999999999999

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.61  E-value=7.4e-16  Score=134.83  Aligned_cols=103  Identities=14%  Similarity=0.231  Sum_probs=89.3

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHh-ccCCC----Ccccccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLL-TVRPE----TETPVSAVS  297 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll-~~~~~----~~~~V~dim  297 (508)
                      +.-.+|+++|++  ++.++++++++. ++++.|.+++++++||++++ ++++|+++.+|++ .....    ...+++++|
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   80 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELA   80 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHH
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHh
Confidence            344689999987  788899999999 99999999999999999765 7899999999998 33322    246799999


Q ss_pred             cccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       298 ~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .+++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  112 (133)
T 1y5h_A           81 RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS  112 (133)
T ss_dssp             TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE
Confidence            89999999999999999999999999999999

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.61  E-value=1.3e-15  Score=131.50  Aligned_cols=99  Identities=14%  Similarity=0.205  Sum_probs=88.4

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Ccccccccccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v  301 (508)
                      ++|+++|++  ++.++++++++. ++++.|.+++++.+||++ + ++++|+++.+|++.....    ...++.++|.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~   75 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDL   75 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGG
T ss_pred             CCHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCC
Confidence            368999997  788999999999 999999999999999998 4 899999999999865321    2467999998999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~v~~~~~l~~~~~~~~~~~~~~l~Vvd  103 (125)
T 1pbj_A           76 VTISPRATIKEAAEKMVKNVVWRLLVEE  103 (125)
T ss_dssp             GEECTTSCHHHHHHHHHHHTCSEEEEEE
T ss_pred             eEECCCCCHHHHHHHHHhcCCcEEEEEE
Confidence            9999999999999999999999999999

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.61  E-value=1.5e-15  Score=141.05  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=90.7

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-----CCccccccccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-----ETETPVSAVSIRR  300 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-----~~~~~V~dim~~~  300 (508)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....     ....+++++|.++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~   84 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   84 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCC
Confidence            689999986  888999999999 99999999999999999865 78999999999987543     2346799999889


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        85 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  113 (184)
T 1pvm_A           85 IPKVKSDYDVKDVAAYLSENGLERCAVVD  113 (184)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcEECCCCCHHHHHHHHHHcCCcEEEEEc
Confidence            99999999999999999999999999999

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.60  E-value=2.5e-15  Score=136.37  Aligned_cols=102  Identities=24%  Similarity=0.256  Sum_probs=90.8

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC------------CCcc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP------------ETET  291 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~------------~~~~  291 (508)
                      ...+|+++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|++....            ....
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~   78 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFET   78 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCC
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhccc
Confidence            45789999997  788899999999 99999999999999999865 78999999999986421            2346


Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        79 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  116 (160)
T 2o16_A           79 PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA  116 (160)
T ss_dssp             BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE
T ss_pred             CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE
Confidence            79999999999999999999999999999999999999

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.59  E-value=2.4e-15  Score=132.97  Aligned_cols=103  Identities=15%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             Cccccccc---ccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----Cccccc
Q 010540          223 LTEKTAEE---AMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVS  294 (508)
Q Consensus       223 l~~~~V~d---IMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~V~  294 (508)
                      +-+.++++   +|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++.....     ...++.
T Consensus         5 ~~~~~v~~~~~~~~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~   80 (144)
T 2nyc_A            5 FLKIPIGDLNIITQD--NMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG   80 (144)
T ss_dssp             GGGSBGGGSSCCBCS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHH
T ss_pred             hhhcchhhcCCCCCC--CceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccHH
Confidence            45667888   7875  788999999999 99999999999999999865 889999999999875322     246789


Q ss_pred             ccccc------cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          295 AVSIR------RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       295 dim~~------~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++|.+      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        81 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  121 (144)
T 2nyc_A           81 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  121 (144)
T ss_dssp             HHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC
Confidence            98875      688999999999999999999999999999

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.58  E-value=4e-15  Score=137.49  Aligned_cols=106  Identities=14%  Similarity=0.172  Sum_probs=90.9

Q ss_pred             Ccccccccccccccc--eEEE--eCCCCchHHHHHHHHHcCCcEEEEee-CCCCcEEEEeEHhHHhccCC----------
Q 010540          223 LTEKTAEEAMTPIES--TFSL--DVNSKLDWEAMGKILARGHSRVPVYS-GNPKNIIGLLLVKSLLTVRP----------  287 (508)
Q Consensus       223 l~~~~V~dIMtpr~~--vv~v--~~~~tl~~eal~~~~~~~~sr~PV~~-~~~d~ivGiv~~kDll~~~~----------  287 (508)
                      +.+.+|+++|++..+  ++++  ++++++. ++++.|.+++++.+||++ ++.++++|+|+.+|++....          
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            367899999998533  6778  9999998 999999999999999993 23489999999999986521          


Q ss_pred             ------------------CCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          288 ------------------ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       288 ------------------~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                                        ....++.++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd  146 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  146 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE
Confidence                              234679999988999999999999999999999999999998

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.58  E-value=3.1e-15  Score=135.31  Aligned_cols=109  Identities=14%  Similarity=0.159  Sum_probs=91.2

Q ss_pred             HHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeC-CCCcEEEEeEHhHHhccCCC--------
Q 010540          218 SGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRPE--------  288 (508)
Q Consensus       218 ~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~-~~d~ivGiv~~kDll~~~~~--------  288 (508)
                      .+.+.+.+.+|+++|++  +++++++++++. ++++.|.+++++.+||+++ +.++++|+++.+|++.....        
T Consensus         5 ~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~   81 (164)
T 2pfi_A            5 GRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG   81 (164)
T ss_dssp             -----CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------C
T ss_pred             cccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCc
Confidence            34556788999999998  788899999999 9999999999999999986 24889999999999865422        


Q ss_pred             Cccccccccccc------ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          289 TETPVSAVSIRR------IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       289 ~~~~V~dim~~~------v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ...++.++|.++      +.++++++++.++++.|.+++.+.+||+|
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  128 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS  128 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE
T ss_pred             ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE
Confidence            124688888765      78899999999999999999999999998

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.56  E-value=1.9e-15  Score=166.83  Aligned_cols=104  Identities=20%  Similarity=0.115  Sum_probs=91.4

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHH-HcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc------------
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKIL-ARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE------------  290 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~-~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~------------  290 (508)
                      .+.+|+|+|+||+++.+++++++++ |+.+.|. +++++++||+|++ ++++|+|+.+|+.+......            
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC-------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            6789999999988999999999999 9999999 7999999999875 89999999999987543210            


Q ss_pred             ---------------------------------------ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 ---------------------------------------TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ---------------------------------------~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                                                             .+++++|.+++.+|++++++.++++.|++++.+++||+|
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve  606 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE  606 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE
Confidence                                                   137789999999999999999999999999999999994

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.55  E-value=1.9e-14  Score=154.28  Aligned_cols=149  Identities=13%  Similarity=0.164  Sum_probs=118.8

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCC
Q 010540          186 LFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH  260 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~~g~l~-----~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~  260 (508)
                      .++++||...+...    +..|.+.     +++++++++++++     +++|++  +++++++++++. ++++.|.++++
T Consensus        54 ~vt~~eLa~av~~~----Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIARA----GGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHc----CCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            56788999888632    2223344     6778888888654     789997  888999999998 99999999999


Q ss_pred             cEEEEeeC-CCCcEEEEeEHhHHhccCCCCcccccccccc-cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540          261 SRVPVYSG-NPKNIIGLLLVKSLLTVRPETETPVSAVSIR-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (508)
Q Consensus       261 sr~PV~~~-~~d~ivGiv~~kDll~~~~~~~~~V~dim~~-~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv  338 (508)
                      +++||+++ +.++++|+|+.+|++... ..+.+++++|.+ ++.++++++++.++++.|++++.+.+||+|++|+++|++
T Consensus       122 ~~~pVvd~~~~~~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiv  200 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIITNRDMRFIS-DYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI  200 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHHHCS-CSSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEEEHHHHhhhc-cCCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            99999982 348999999999998653 345789999987 899999999999999999999999999999555555555


Q ss_pred             CCCCCCccccc
Q 010540          339 PMTDGKKPKLN  349 (508)
Q Consensus       339 ~~t~kDll~~i  349 (508)
                        |.+|+++.+
T Consensus       201 --t~~Dil~~~  209 (491)
T 1zfj_A          201 --TIKDIEKVI  209 (491)
T ss_dssp             --EHHHHHHHH
T ss_pred             --EHHHHHHHH
Confidence              444444433

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.54  E-value=3.7e-14  Score=135.27  Aligned_cols=108  Identities=12%  Similarity=0.047  Sum_probs=93.8

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceee
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRV  304 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V  304 (508)
                      .-+++++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+.....  ..+++++|.+++.++
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~--~~~v~~im~~~~~~v   85 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFV   85 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCE
T ss_pred             ccCHHHhhcC--CCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC--CCcHHHHccCCCEEE
Confidence            3478999987  888999999999 99999999999999999865 88999999999987654  467999999999999


Q ss_pred             cCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540          305 PSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (508)
Q Consensus       305 ~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv  338 (508)
                      ++++++.++++.|.+++.+.+||+|++|+++|++
T Consensus        86 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGii  119 (213)
T 1vr9_A           86 HEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAV  119 (213)
T ss_dssp             ETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEE
T ss_pred             CCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEE
Confidence            9999999999999999999999999444444444

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.52  E-value=3.4e-14  Score=152.67  Aligned_cols=150  Identities=15%  Similarity=0.183  Sum_probs=120.6

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (508)
Q Consensus       185 ~~~s~eEL~~lv~~~~~e~~~~g~l~-----~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~  259 (508)
                      ..+|++++...+...+    .-|.|.     +++.+++.++..     .+++|++  +++++++++++. ++++.|.+++
T Consensus        76 dtvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~  143 (511)
T 3usb_A           76 DTVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYR  143 (511)
T ss_dssp             TTTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHC
T ss_pred             hhhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcC
Confidence            3567888877665221    113332     345556777754     5577876  788999999999 9999999999


Q ss_pred             CcEEEEeeC--CCCcEEEEeEHhHHhccCCCCcccccccccc-cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540          260 HSRVPVYSG--NPKNIIGLLLVKSLLTVRPETETPVSAVSIR-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (508)
Q Consensus       260 ~sr~PV~~~--~~d~ivGiv~~kDll~~~~~~~~~V~dim~~-~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G  336 (508)
                      ++++||+++  + ++++|+|+.+|+... .....+++++|.+ +++++++++++.++++.|++++.+.+||+|++|.++|
T Consensus       144 ~s~~pVvd~g~~-~~lvGiVt~rDl~~~-~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~G  221 (511)
T 3usb_A          144 ISGVPVVNNLDE-RKLVGIITNRDMRFI-QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQG  221 (511)
T ss_dssp             CSEEEEESCTTT-CBEEEEEEHHHHTTC-CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEE
T ss_pred             CcEEEEEecCCC-CEEEEEEEehHhhhh-ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEee
Confidence            999999986  4 899999999999853 3345789999987 8999999999999999999999999999998888888


Q ss_pred             cCCCCCCCcccccc
Q 010540          337 LPPMTDGKKPKLNE  350 (508)
Q Consensus       337 iv~~t~kDll~~i~  350 (508)
                      ++  |.+|+++.+.
T Consensus       222 iI--T~~Dil~~~~  233 (511)
T 3usb_A          222 LI--TIKDIEKVIE  233 (511)
T ss_dssp             EE--EHHHHHHHHH
T ss_pred             ec--cHHHHHHhhh
Confidence            88  8888876654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.51  E-value=5.1e-15  Score=158.51  Aligned_cols=150  Identities=16%  Similarity=0.217  Sum_probs=113.9

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCC-----ChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540          185 ALFRRAQLKALVTIHSQEAGKGGEL-----THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (508)
Q Consensus       185 ~~~s~eEL~~lv~~~~~e~~~~g~l-----~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~  259 (508)
                      ..+|++++...+..+    +.-|.|     .++++++++++     ++++++|++  +++++++++++. ++++.|.+++
T Consensus        52 dtVTe~~ma~a~a~~----GGiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~~--d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQE----GGIGFIHKNMSIEQQAAQVHQV-----KIFEAGVVT--HPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHH----TCEEEECSSSCHHHHHHHHHHH-----HHCCC--CB--CCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHc----CCcceecCCCCHHHHHHHHHhc-----ccccccccc--CceEECCCCCHH-HHHHHHHHcC
Confidence            457889988877532    112334     56778889888     566889986  889999999999 9999999999


Q ss_pred             CcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc-c-cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCcccc
Q 010540          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-R-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (508)
Q Consensus       260 ~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~-~-~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Gi  337 (508)
                      ++++||++++ ++++|+|+.+|+... .....+++++|. + +++++++++++.++++.|++++.+.+||+|++|+++|+
T Consensus       120 ~s~~PVvd~~-~~lvGiVt~rDL~~~-~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~Gi  197 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIITGRDVRFV-TDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGM  197 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEEHHHHTTC-CCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEE
T ss_pred             CcEEEEEccC-CEEEEEEEHHHHhhc-ccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEe
Confidence            9999999875 899999999999843 234578999987 4 58999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccc
Q 010540          338 PPMTDGKKPKLNE  350 (508)
Q Consensus       338 v~~t~kDll~~i~  350 (508)
                      +  |.+|+++...
T Consensus       198 I--T~~DIl~~~~  208 (496)
T 4fxs_A          198 I--TAKDFHKAES  208 (496)
T ss_dssp             E--CCC-----CC
T ss_pred             e--hHhHHHHhhc
Confidence            9  9999997654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.47  E-value=3.8e-14  Score=137.63  Aligned_cols=119  Identities=15%  Similarity=0.153  Sum_probs=100.7

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----------------
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------------  288 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----------------  288 (508)
                      ..+|+|+|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+++....                
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLK-MAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            4689999987  788999999998 99999999999999999875 899999999999864210                


Q ss_pred             --------------------------------------------------------------------------------
Q 010540          289 --------------------------------------------------------------------------------  288 (508)
Q Consensus       289 --------------------------------------------------------------------------------  288 (508)
                                                                                                      
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~  161 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAK  161 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---------------------Cccccccccc-ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcc
Q 010540          289 ---------------------TETPVSAVSI-RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKP  346 (508)
Q Consensus       289 ---------------------~~~~V~dim~-~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll  346 (508)
                                           ...+++++|. +++.++++++++.++++.|.+++.+.+||+|++|+++|++  |.+|++
T Consensus       162 ~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Gii--t~~dll  239 (245)
T 3l2b_A          162 KNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSI--ARFHLI  239 (245)
T ss_dssp             HHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEE--ECC---
T ss_pred             HcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEE--EHHHhh
Confidence                                 0235788888 8999999999999999999999999999999999999999  999998


Q ss_pred             ccc
Q 010540          347 KLN  349 (508)
Q Consensus       347 ~~i  349 (508)
                      +..
T Consensus       240 ~~~  242 (245)
T 3l2b_A          240 STH  242 (245)
T ss_dssp             ---
T ss_pred             chh
Confidence            643

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.46  E-value=1e-13  Score=149.81  Aligned_cols=102  Identities=13%  Similarity=0.165  Sum_probs=89.0

Q ss_pred             CcccccccccccccceEEEeCC-CCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC----CCcccccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVN-SKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP----ETETPVSAVS  297 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~-~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~----~~~~~V~dim  297 (508)
                      +.+.+|+++|++  ++++++++ +++. ++++.|.+++++++||++++.++++|+|+.+|+++...    ....+|+++|
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im  457 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL  457 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh
Confidence            567899999997  88899999 9999 99999999999999999833489999999999986432    2346899999


Q ss_pred             cccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          298 IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       298 ~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .+++.+|++++++.++++.|.+++  ++||+|
T Consensus       458 ~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd  487 (527)
T 3pc3_A          458 NKRVIRLNESEILGKLARVLEVDP--SVLILG  487 (527)
T ss_dssp             ETTCCEEETTSBHHHHHHHHTTCS--EEEEEE
T ss_pred             cCCCeEECCCCcHHHHHHHHhhCC--EEEEEe
Confidence            999999999999999999997666  479998

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.46  E-value=7.8e-15  Score=157.06  Aligned_cols=145  Identities=13%  Similarity=0.195  Sum_probs=22.6

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCC
Q 010540          186 LFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGH  260 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~~g~l~-----~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~  260 (508)
                      .++.+|+...+...    +..|.+.     +++++++++++++.+     +|++  +++++++++++. ++++.|.++++
T Consensus        57 ~vt~~ela~ava~~----GglG~i~~~~~~e~~~~~I~~v~~~~~-----~m~~--~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMARE----GGLGVIHRNMGIEEQVEQVKRVKRAER-----LIVE--DVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHhc----CCceeecCCCCHHHHHHHHHhhcchhh-----cccc--CceEECCCCCHH-HHHHHHHHcCC
Confidence            46778888877521    1123343     577889999987754     7885  899999999999 99999999999


Q ss_pred             cEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCC
Q 010540          261 SRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPM  340 (508)
Q Consensus       261 sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~  340 (508)
                      +++||+++  ++++|+|+.+|++.   ....+++++|.+++.++++++++.++++.|++++.+.+||+|++|+++|++  
T Consensus       125 ~~~pVvd~--~~lvGivt~~Dl~~---~~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGii--  197 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITKKDIAA---REGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI--  197 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEC--CEEEEEEEHHHhcc---CCCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEE--
Confidence            99999986  89999999999986   345679999988899999999999999999999999999999888888988  


Q ss_pred             CCCCccccc
Q 010540          341 TDGKKPKLN  349 (508)
Q Consensus       341 t~kDll~~i  349 (508)
                      |.+|+++..
T Consensus       198 T~~Dil~~~  206 (486)
T 2cu0_A          198 TMSDLVARK  206 (486)
T ss_dssp             ---------
T ss_pred             EHHHHHHhh
Confidence            888887654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.44  E-value=1.3e-14  Score=155.76  Aligned_cols=156  Identities=10%  Similarity=0.073  Sum_probs=19.6

Q ss_pred             cccHHHHHHHHHHhhhhhccCCCCC-hhHHHHHHHhhcCcccccccc-cccccceEEEeCCCCchHHHHHHHHHcCCcEE
Q 010540          186 LFRRAQLKALVTIHSQEAGKGGELT-HDETTIISGALDLTEKTAEEA-MTPIESTFSLDVNSKLDWEAMGKILARGHSRV  263 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~~g~l~-~~E~~~i~~vl~l~~~~V~dI-Mtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~  263 (508)
                      .++++++...+...+..+--...++ +++++++.++..      .++ |++  +++++++++++. ++++.|.+++++++
T Consensus        61 ~vt~~~la~~la~~gg~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~~s~~  131 (503)
T 1me8_A           61 SVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTTHNTV  131 (503)
T ss_dssp             TTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHT------TTC---------------------------------
T ss_pred             hhhHHHHHHHHHhCCCcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcCceEE
Confidence            4677888777752110000000122 456777766543      455 998  889999999999 99999999999999


Q ss_pred             EEeeCC--CCcEEEEeEHhHHhccCCCCccccccccccc--ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCC
Q 010540          264 PVYSGN--PKNIIGLLLVKSLLTVRPETETPVSAVSIRR--IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPP  339 (508)
Q Consensus       264 PV~~~~--~d~ivGiv~~kDll~~~~~~~~~V~dim~~~--v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~  339 (508)
                      ||++++  .++++|+|+.+|++........+++++|.++  ++++++++++.++++.|++++.+.+||+|++|+++|++ 
T Consensus       132 pVvd~~~~~g~lvGiVt~~Dl~~~~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiI-  210 (503)
T 1me8_A          132 AVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIV-  210 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCcCCeEEEEEEHHHHHhhhccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEE-
Confidence            999864  3789999999999853223346799999876  99999999999999999999999999999999999999 


Q ss_pred             CCCCCcccccccc
Q 010540          340 MTDGKKPKLNEAK  352 (508)
Q Consensus       340 ~t~kDll~~i~~~  352 (508)
                       |.+|+++.+...
T Consensus       211 -T~~Dil~~~~~~  222 (503)
T 1me8_A          211 -FRKDYDRSQVCH  222 (503)
T ss_dssp             ------------C
T ss_pred             -EecHHHHhhhcc
Confidence             999999776533

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.44  E-value=2e-13  Score=133.54  Aligned_cols=60  Identities=8%  Similarity=0.073  Sum_probs=53.7

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCC-CcEEEEeEHhHHhc
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNP-KNIIGLLLVKSLLT  284 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~-d~ivGiv~~kDll~  284 (508)
                      ...+++|+|+|++  +++++.+++++. ++.+.|.+++++++||++++. ++++|+|+.+|++.
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~   69 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEG   69 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHH
Confidence            3567899999997  899999999999 999999999999999998642 57999999999975

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.39  E-value=6.3e-14  Score=149.87  Aligned_cols=149  Identities=16%  Similarity=0.203  Sum_probs=22.7

Q ss_pred             ccccHHHHHHHHHHhhhhhccCCCCC-----hhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcC
Q 010540          185 ALFRRAQLKALVTIHSQEAGKGGELT-----HDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARG  259 (508)
Q Consensus       185 ~~~s~eEL~~lv~~~~~e~~~~g~l~-----~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~  259 (508)
                      ..+|++++...+...+    .-|.|.     +++++++.++     ++++++|++  +++++++++++. ++++.|.+++
T Consensus        51 ~tVTe~~lA~ala~~G----GiGvI~~~~~~e~~a~~v~~v-----k~~~~~m~~--~~v~v~~~~tv~-ea~~~m~~~~  118 (490)
T 4avf_A           51 DTVTEARLAIAMAQEG----GIGIIHKNMGIEQQAAEVRKV-----KKHETAIVR--DPVTVTPSTKII-ELLQMAREYG  118 (490)
T ss_dssp             TTTCSHHHHHHHHHHT----SEEEECCSSCHHHHHHHHHHH-----HHCCC-----------------------------
T ss_pred             hhhCHHHHHHHHHHcC----CCccccCCCCHHHHHHHhhhh-----cccccCccc--CceEeCCCCcHH-HHHHHHHHhC
Confidence            3578889888775321    123333     5567777777     457889986  888999999999 9999999999


Q ss_pred             CcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc-c-cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCcccc
Q 010540          260 HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI-R-RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTL  337 (508)
Q Consensus       260 ~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~-~-~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Gi  337 (508)
                      ++++||++ + ++++|+|+.+|+... .....+++++|. + +++++++++++.++++.|++++.+.+||+|++|+++|+
T Consensus       119 ~s~~pVvd-~-g~lvGIVt~rDl~~~-~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGi  195 (490)
T 4avf_A          119 FSGFPVVE-Q-GELVGIVTGRDLRVK-PNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGL  195 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEEEE-C-CEEEEEEEhHHhhhc-cccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence            99999998 3 899999999999643 234578999988 4 68999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccc
Q 010540          338 PPMTDGKKPKLNE  350 (508)
Q Consensus       338 v~~t~kDll~~i~  350 (508)
                      +  |.+|+++...
T Consensus       196 I--T~~Dil~~~~  206 (490)
T 4avf_A          196 V--TFRDIEKAKT  206 (490)
T ss_dssp             -------------
T ss_pred             E--ehHHhhhhcc
Confidence            9  9999997654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.16  E-value=5.2e-12  Score=135.45  Aligned_cols=132  Identities=15%  Similarity=0.162  Sum_probs=13.2

Q ss_pred             CChh-HHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540          209 LTHD-ETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (508)
Q Consensus       209 l~~~-E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~  287 (508)
                      ++.+ .++.+.++.     +++++|++  +++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+... .
T Consensus        82 ~~~e~~~~~v~~v~-----~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~-~  151 (494)
T 1vrd_A           82 LTPDEQARQVSIVK-----KTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE-K  151 (494)
T ss_dssp             SCHHHHHHHHHHHH-----TC-----------------------------------------------------------
T ss_pred             CChHHHHHHHHhhh-----hHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh-c
Confidence            3443 344565554     46789987  889999999999 99999999999999999865 789999999999863 2


Q ss_pred             CCcccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcccccccc
Q 010540          288 ETETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAK  352 (508)
Q Consensus       288 ~~~~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~  352 (508)
                      ....+++++|.+  ++.++++++++.++++.|.+++.+.+||+|++|+++|++  |.+|+++.+...
T Consensus       152 ~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI--t~~Dll~~~~~~  216 (494)
T 1vrd_A          152 NLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI--TIKDIMSVIEHP  216 (494)
T ss_dssp             -----------------------------------------------------------CHHHHTCT
T ss_pred             CCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEE--EHHHHHhhhccc
Confidence            234679999987  899999999999999999999999999999999999999  999999877654

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.07  E-value=2.1e-11  Score=128.58  Aligned_cols=127  Identities=12%  Similarity=0.218  Sum_probs=9.3

Q ss_pred             hHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCCCC
Q 010540          212 DETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRPET  289 (508)
Q Consensus       212 ~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~~~  289 (508)
                      ++.++++++-++..     .|+.  +.+++.++.++. |+++.+.+++++.+||+++.  .++++||++-+|+...  +.
T Consensus       129 ~Qa~~V~~VKr~e~-----g~i~--dPvtl~P~~Tv~-da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d~  198 (556)
T 4af0_A          129 EQAAMVRRVKKYEN-----GFIT--DPLCLGPDATVG-DVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--DA  198 (556)
T ss_dssp             HHHHHHHHHHHCCC------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhccc-----CccC--CCeEcCCCCCHH-HHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--cc
Confidence            45677888766654     4543  678999999999 99999999999999999852  3689999999998753  44


Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcccccc
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~  350 (508)
                      ..+|+++|++++++++++.+++++.+.|++++...+||||+.|+++|++  |.||+++...
T Consensus       199 ~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlI--T~kDi~k~~~  257 (556)
T 4af0_A          199 ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLV--ARSDLLKNQN  257 (556)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEE--Eechhhhhhh
Confidence            5789999999999999999999999999999999999999999999999  9999986553

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.06  E-value=1.5e-11  Score=132.47  Aligned_cols=121  Identities=12%  Similarity=0.203  Sum_probs=72.5

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC--CCcEEEEeEHhHHhccCC-CCcccccccccc--c
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN--PKNIIGLLLVKSLLTVRP-ETETPVSAVSIR--R  300 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~--~d~ivGiv~~kDll~~~~-~~~~~V~dim~~--~  300 (508)
                      ++++++|++  +++++++++++. ++++.|.+++++.+||++++  .++++|+|+.+|+..... ....+++++|.+  +
T Consensus       108 ~~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~~~~  184 (514)
T 1jcn_A          108 KNFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIE  184 (514)
T ss_dssp             HTCCTTSCS--SCCCCCC------------------CEESCC--------CCEECTTTTC----------------CCBC
T ss_pred             hhhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCCCCC
Confidence            368899986  678899999999 99999999999999999863  378999999999976421 234679999987  8


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccc
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEA  351 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~  351 (508)
                      ++++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++.+..
T Consensus       185 ~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiI--t~~Dll~~~~~  233 (514)
T 1jcn_A          185 LVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAII--ARTDLKKNRDY  233 (514)
T ss_dssp             CCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC------CCCCSSCCCC
T ss_pred             CeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEE--EHHHHHHHhhC
Confidence            99999999999999999999999999999999999999  99999977653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.81  E-value=1.2e-09  Score=105.67  Aligned_cols=59  Identities=8%  Similarity=0.091  Sum_probs=54.6

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCcccccc
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNE  350 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~  350 (508)
                      ..+|+++|.+++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++.+.
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Gii--t~~di~~~~~   64 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGML--STSNITATYM   64 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEE--EHHHHHHHHH
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEE--EHHHHHHHHH
Confidence            3579999999999999999999999999999999999999999999999  9999987654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.63  E-value=1.1e-08  Score=109.45  Aligned_cols=115  Identities=12%  Similarity=0.008  Sum_probs=82.3

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccC-
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKT-  370 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~-  370 (508)
                      .++++|.++++++++++++.++++.|.+++...+||+|+.|+++|+|  |.+|+.....          +...+.+.+. 
T Consensus        90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiV--t~rDL~~~~~----------~~~~v~diM~p  157 (496)
T 4fxs_A           90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGII--TGRDVRFVTD----------LTKSVAAVMTP  157 (496)
T ss_dssp             HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEE--EHHHHTTCCC----------TTSBGGGTSEE
T ss_pred             ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEE--EHHHHhhccc----------CCCcHHHHhcC
Confidence            46778899999999999999999999999999999999999999999  9999863211          1112333344 


Q ss_pred             --CceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHH
Q 010540          371 --ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEEL  427 (508)
Q Consensus       371 --~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleei  427 (508)
                        +.++++++.++.+.++.|+.++.+...+++         |+|+++|+||.+||++..
T Consensus       158 ~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD---------e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          158 KERLATVKEGATGAEVQEKMHKARVEKILVVN---------DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             GGGCCEEECC----CGGGTCC---CCCEEEEC---------TTSBCCEEECCC-----C
T ss_pred             CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---------CCCCEEEeehHhHHHHhh
Confidence              578999999999999999988766655555         899999999999999863

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.62  E-value=6.3e-08  Score=75.46  Aligned_cols=65  Identities=12%  Similarity=0.239  Sum_probs=54.7

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC-C----Ccccccccccccceee
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP-E----TETPVSAVSIRRIPRV  304 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~-~----~~~~V~dim~~~v~~V  304 (508)
                      +++++++++++. |+++.|.+++++.+||.++  ++++|+++.+|+++... .    .+.+|+++|.+++.+|
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            367899999999 9999999999999999985  78999999999975432 2    2357999999887664

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.44  E-value=7.4e-08  Score=87.98  Aligned_cols=123  Identities=11%  Similarity=0.034  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCccccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEE
Q 010540          250 EAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAV  327 (508)
Q Consensus       250 eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~V  327 (508)
                      +.++.+.+.+.....+-.++.+.+.+++..++         .+++++|.  ++++++++++++.++++.|.+++.+.+||
T Consensus        10 ~el~~l~~~~~~~g~l~~~e~~~i~~~~~l~~---------~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pV   80 (172)
T 3lhh_A           10 EDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDE---------RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPV   80 (172)
T ss_dssp             ------------------------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEE
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHhccCC---------CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEE
Confidence            44555555444433333344455666666554         34899998  78899999999999999999999999999


Q ss_pred             EecC-CCccccCCCCCCCccccccccCCCCCCcccccccccccCCceeecCCCCCccchhhhhcc
Q 010540          328 VKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSS  391 (508)
Q Consensus       328 vDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~V~~~~~l~~~~~~~~~~  391 (508)
                      +|+. |+++|++  |.+|++.......     ..   .+.+.+..+.++++++++.+..+.|..+
T Consensus        81 vd~~~~~lvGiv--t~~dl~~~~~~~~-----~~---~v~~im~~~~~v~~~~~l~~a~~~m~~~  135 (172)
T 3lhh_A           81 CRNNVDDMVGII--SAKQLLSESIAGE-----RL---ELVDLVKNCNFVPNSLSGMELLEHFRTT  135 (172)
T ss_dssp             ESSSTTSEEEEE--EHHHHHHHHHTTC-----CC---CGGGGCBCCEEEETTCCHHHHHHHHHHH
T ss_pred             EeCCCCeEEEEE--EHHHHHHHHhhcC-----cc---cHHHHhcCCeEeCCCCCHHHHHHHHHHc
Confidence            9988 9999999  9999997765332     11   2233336788999999999999998877

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.41  E-value=3e-08  Score=105.93  Aligned_cols=114  Identities=14%  Similarity=0.069  Sum_probs=2.7

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccC-
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKT-  370 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~-  370 (508)
                      .++++|..++.++++++++.++++.|.+++.+.+||+| .|+++|++  |.+|+......          ...+.+.+. 
T Consensus        89 ~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIV--t~rDl~~~~~~----------~~~V~~vMtp  155 (490)
T 4avf_A           89 KHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIV--TGRDLRVKPNA----------GDTVAAIMTP  155 (490)
T ss_dssp             HCCC----------------------------------------------------------------------------
T ss_pred             ccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEE--EhHHhhhcccc----------CCcHHHHhcc
Confidence            46788889999999999999999999999999999999 89999999  99999632211          112333333 


Q ss_pred             --CceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHH
Q 010540          371 --ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEEL  427 (508)
Q Consensus       371 --~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleei  427 (508)
                        .+.+++++.++.+.++.|+.+..+...+++         |+|+++|+||.+||++..
T Consensus       156 ~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD---------e~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          156 KDKLVTAREGTPLEEMKAKLYENRIEKMLVVD---------ENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc---------CCCcEEEEEehHHhhhhc
Confidence              578999999999999999988766654545         899999999999999875

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.39  E-value=4.8e-08  Score=92.67  Aligned_cols=103  Identities=12%  Similarity=0.180  Sum_probs=53.1

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccce-e
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP-R  303 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~-~  303 (508)
                      +.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++...... ..+.+.+.+-.+ .
T Consensus        71 ~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGiit~~Dil~~~~~~-~~~~~~~~~l~~~~  145 (213)
T 1vr9_A           71 DSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVSLHDFLEALIEA-LAMDVPGIRFSVLL  145 (213)
T ss_dssp             TSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEEHHHHHHHHHHS-CC------------
T ss_pred             CCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHH-hcCCCCcEEEEEEe
Confidence            3469999997  778899999999 99999999999999999875 7999999999998754221 112333322111 1


Q ss_pred             ecCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 010540          304 VPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (508)
Q Consensus       304 V~~~~~l~d~L~~m~~~~~~~a~VvDe~g  332 (508)
                      .....++.++.+.|.+++.+.++|++..|
T Consensus       146 ~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          146 EDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             -----------------------------
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            13444599999999999999999887543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.34  E-value=6.6e-08  Score=103.48  Aligned_cols=119  Identities=15%  Similarity=0.152  Sum_probs=6.8

Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCCc
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTES  372 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~  372 (508)
                      ++++|.++++++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+.....       ...+..+++.....+
T Consensus        97 ~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGiv--t~~Dl~~~~~-------~~~~v~~im~~~~~~  167 (494)
T 1vrd_A           97 TENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLL--TNRDVRFEKN-------LSKKIKDLMTPREKL  167 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEE--EHHHHHhhcC-------CCCcHHHHhCCCCCC
Confidence            6788999999999999999999999999999999999999999999  9999985211       111111222111257


Q ss_pred             eeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          373 VVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       373 ~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ..++++.++.+..+.|..+..+...++     |    ++|+++|+||..|+++.+..
T Consensus       168 ~~v~~~~~l~ea~~~m~~~~~~~lpVV-----d----~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          168 IVAPPDISLEKAKEILHQHRIEKLPLV-----S----KDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             --------------------------------------------------CHHHHTC
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEE-----c----CCCeEEEEEEHHHHHhhhcc
Confidence            889999999999999887754443333     4    78999999999999999876

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.30  E-value=2.7e-08  Score=89.34  Aligned_cols=117  Identities=14%  Similarity=0.096  Sum_probs=95.8

Q ss_pred             cccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecCC-CccccCCCCCCCccccccccCCCCCCcccccccc
Q 010540          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG-KSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (508)
Q Consensus       290 ~~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g-~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~  366 (508)
                      ..+++++|.+  +++++++++++.++++.|.+++.+.+||+|+.+ +++|++  |.+|++......        +...+.
T Consensus        37 ~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGiv--t~~dl~~~~~~~--------~~~~v~  106 (156)
T 3oi8_A           37 DLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGIL--HAKDLLKYMFNP--------EQFHLK  106 (156)
T ss_dssp             TCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEE--EGGGGGGGSSCG--------GGCCHH
T ss_pred             CCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEE--EHHHHHHHHHcC--------CcccHH
Confidence            3569999975  788999999999999999999999999999885 899999  999999776432        111233


Q ss_pred             cccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHH
Q 010540          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFE  425 (508)
Q Consensus       367 ~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIle  425 (508)
                      +.++++++++++.++.+..+.|..+..+...+++         ++|+++||||.+||+|
T Consensus       107 ~im~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd---------~~g~~~Givt~~Dile  156 (156)
T 3oi8_A          107 SILRPAVFVPEGKSLTALLKEFREQRNHMAIVID---------EYGGTSGLVTFEDIIE  156 (156)
T ss_dssp             HHCBCCCEEETTSBHHHHHHHHHHTTCCEEEEEC---------TTSSEEEEEEHHHHCC
T ss_pred             HHcCCCEEECCCCCHHHHHHHHHhcCCeEEEEEC---------CCCCEEEEEEHHHhcC
Confidence            3445688999999999999999988665544444         7899999999999974

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.29  E-value=3.5e-07  Score=83.12  Aligned_cols=128  Identities=17%  Similarity=0.148  Sum_probs=98.5

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCC-------CCCccc-
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGD-------CDLTAP-  361 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~-------~~l~~p-  361 (508)
                      +.+|+++|.+++++|++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++........       .....+ 
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGii--t~~Dll~~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGII--TESDFLRGSIPFWIYEASEILSRAIPAPE   94 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEE--EGGGGGGGTCCTTHHHHHHHHTTTSCHHH
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEE--EHHHHHHHHhhccccchhhhhhhccchhh
Confidence            3579999999999999999999999999999999999999999999999  999998765422210       000000 


Q ss_pred             ---------ccccc-cccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          362 ---------LLSKQ-DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       362 ---------~~~i~-~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                               ...+. -+...++.++++.++.+..+.|..+..+.      ++|-    ++|+++||||..||++.++.
T Consensus        95 ~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~------lpVv----d~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           95 VEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHR------IPVV----QDGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSE------EEEE----ETTEEEEEEEHHHHTTTSCC
T ss_pred             HHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcE------EEEE----ECCEEEEEEEHHHHHHHHHh
Confidence                     00111 22456788999999999999998875443      3332    36999999999999999987

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.29  E-value=4.1e-07  Score=79.50  Aligned_cols=93  Identities=8%  Similarity=-0.021  Sum_probs=75.4

Q ss_pred             cccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       291 ~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                      .+++++|.  +++.++++++++.++++.|.+++.+.+||+|+. |+++|++  |.+|++..+.....      +...+.+
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGiv--t~~dl~~~~~~~~~------~~~~v~~   74 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVL--LAKDLLPLILKADG------DSDDVKK   74 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEE--EGGGGGGGGGSSSG------GGCCGGG
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEE--EHHHHHHHHHhccC------CCcCHHH
Confidence            45889998  678999999999999999999999999999987 8999999  99999987652111      1112334


Q ss_pred             ccCCceeecCCCCCccchhhhhcc
Q 010540          368 EKTESVVVDVDRPLSSGSMNRLSS  391 (508)
Q Consensus       368 ~~~~~~~V~~~~~l~~~~~~~~~~  391 (508)
                      .++++.+++++.++.+....|..+
T Consensus        75 ~m~~~~~v~~~~~l~~~~~~m~~~   98 (136)
T 3lfr_A           75 LLRPATFVPESKRLNVLLREFRAN   98 (136)
T ss_dssp             TCBCCCEEETTCBHHHHHHHHHHH
T ss_pred             HcCCCeEECCCCcHHHHHHHHHhc
Confidence            445688999999999999888876

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.27  E-value=7.1e-07  Score=77.11  Aligned_cols=123  Identities=16%  Similarity=0.190  Sum_probs=100.2

Q ss_pred             ccccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCcccccccc
Q 010540          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (508)
Q Consensus       290 ~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~  366 (508)
                      +.+++++|.  ++++++++++++.++++.|.+++.+.+||+|+. |+++|++  |.+|+++.....         ...+.
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Giv--t~~dl~~~~~~~---------~~~v~   72 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGIL--LAKDLLRYMLEP---------ALDIR   72 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEE--EGGGGGGGGTCT---------TSCGG
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEE--EHHHHHhHhccC---------CcCHH
Confidence            356899998  678899999999999999999999999999986 8999999  999999776421         11233


Q ss_pred             cccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccC
Q 010540          367 DEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIV  433 (508)
Q Consensus       367 ~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~  433 (508)
                      +.++.+++++++.++.+..+.|..+..+...+++         ++|+++|+||.+||+++++| ||+
T Consensus        73 ~~m~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd---------~~g~~~Giit~~Dil~~l~g-ei~  129 (129)
T 3jtf_A           73 SLVRPAVFIPEVKRLNVLLREFRASRNHLAIVID---------EHGGISGLVTMEDVLEQIVG-DIE  129 (129)
T ss_dssp             GGCBCCCEEETTCBHHHHHHHHHTSSCCEEEEEC---------C-CCEEEEEEHHHHHHHHHH-TC-
T ss_pred             HHhCCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEEHHHHHHHHhC-CCC
Confidence            3345688999999999999999987655444444         78999999999999999999 763

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.25  E-value=5.3e-07  Score=77.61  Aligned_cols=121  Identities=15%  Similarity=0.165  Sum_probs=97.3

Q ss_pred             ccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       291 ~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                      .+++++|.+  ++.++++++++.++++.|.+++.+.+||+|+. |+++|++  |.+|+++.+......       ..+.+
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGiv--t~~dl~~~~~~~~~~-------~~v~~   73 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGIL--MAKDLLPFMRSDAEA-------FSMDK   73 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEE--EGGGGGGGGSTTCCC-------CCHHH
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEE--EHHHHHHHHhccCCC-------CCHHH
Confidence            458899984  48999999999999999999999999999988 8999999  999999876533211       12333


Q ss_pred             ccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          368 EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       368 ~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      .++.+.+++++.++.+..+.|..+..+...+++         ++|+++|+||.+|++++++|
T Consensus        74 ~m~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---------~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           74 VLRTAVVVPESKRVDRMLKEFRSQRYHMAIVID---------EFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             HCBCCCEEETTCBHHHHHHHHHHTTCCEEEEEC---------TTSCEEEEEEHHHHHHHC--
T ss_pred             HcCCCeEECCCCcHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEEHHHHHHHHhC
Confidence            345678999999999999999887655443433         78999999999999999998

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.22  E-value=3.5e-07  Score=80.90  Aligned_cols=123  Identities=11%  Similarity=0.116  Sum_probs=101.8

Q ss_pred             ccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       291 ~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                      .+++++|.+  ++.++++++++.++++.|.+++.+.+||+|+. |+++|++  |.+|++....... .    .   .+.+
T Consensus        23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGiv--t~~dl~~~~~~~~-~----~---~v~~   92 (148)
T 3lv9_A           23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFV--HIRDLYNQKINEN-K----I---ELEE   92 (148)
T ss_dssp             CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEE--EHHHHHHHHHHHS-C----C---CGGG
T ss_pred             CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEE--EHHHHHHHHhcCC-C----c---cHHH
Confidence            569999987  89999999999999999999999999999988 8999999  9999997664332 1    1   2233


Q ss_pred             ccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccC
Q 010540          368 EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIV  433 (508)
Q Consensus       368 ~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~  433 (508)
                      .+..+.+++++.++.+..+.|..+..+...+++         ++|+++|+||.+||+++++| ||.
T Consensus        93 ~m~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---------~~g~~~Giit~~dil~~l~~-~i~  148 (148)
T 3lv9_A           93 ILRDIIYISENLTIDKALERIRKEKLQLAIVVD---------EYGGTSGVVTIEDILEEIVG-EIQ  148 (148)
T ss_dssp             TCBCCEEEETTSBHHHHHHHHHHHTCSEEEEEC---------TTSSEEEEEEHHHHHHHHHH-TC-
T ss_pred             hcCCCeEECCCCCHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEEHHHHHHHHhC-cCC
Confidence            346688999999999999999987655544434         78999999999999999998 763

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.12  E-value=3.3e-07  Score=98.53  Aligned_cols=121  Identities=17%  Similarity=0.061  Sum_probs=64.3

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEec---CCCccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA---KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe---~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      .++++|.++++++++++++.++++.|.+++.+.+||+|+   .|+++|++  |.+|+.....     .....|..+++..
T Consensus       109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiV--t~~Dl~~~~~-----~~~~~~v~~vm~~  181 (514)
T 1jcn_A          109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIV--TSRDIDFLAE-----KDHTTLLSEVMTP  181 (514)
T ss_dssp             TCCTTSCSSCCCCCC-----------------CEESCC--------CCEE--CTTTTC---------------------C
T ss_pred             hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEE--EHHHHHhhhh-----ccCCCCHHHHhCC
Confidence            477889889999999999999999999999999999998   58999999  9999975321     0011111122211


Q ss_pred             cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHh
Q 010540          369 KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (508)
Q Consensus       369 ~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeiv  428 (508)
                      ......++++.++.+..+.|..+..+...+++         ++|+++|+||..|+++.+.
T Consensus       182 ~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd---------~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          182 RIELVVAPAGVTLKEANEILQRSKKGKLPIVN---------DCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             CBCCCCEETTCCSTTTTTHHHHHTCSCCCEES---------SSSCCC----CCCCSSCCC
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCcccEEC---------CCCeEEEEEEHHHHHHHhh
Confidence            12578899999999999999887654433333         7899999999999987754

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.07  E-value=2.5e-06  Score=73.36  Aligned_cols=121  Identities=10%  Similarity=0.019  Sum_probs=96.6

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccc-
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE-  368 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~-  368 (508)
                      +.+++++|.++++++++++++.++++.|.+++.+.+||+|+ |+++|++  |.+|+++.........   .   .+.+. 
T Consensus         4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Giv--t~~dl~~~~~~~~~~~---~---~v~~~m   74 (128)
T 3gby_A            4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMV--HLSRLLEGRKGWPTVK---E---KLGEEL   74 (128)
T ss_dssp             TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEE--EHHHHHTTCSSSCCTT---C---BCCGGG
T ss_pred             ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEE--EHHHHHHHHhhCCccc---C---cHHHHc
Confidence            46799999999999999999999999999999999999999 9999999  9999987665432211   1   12222 


Q ss_pred             cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHh
Q 010540          369 KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (508)
Q Consensus       369 ~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeiv  428 (508)
                      ......++++.++.+....|..+..+...++     +    ++|+++|+||..|+++.+.
T Consensus        75 ~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVv-----d----~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           75 LETVRSYRPGEQLFDNLISVAAAKCSVVPLA-----D----EDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCCCCBCTTSBGGGSHHHHHHCSSSEEEEE-----C----TTCBEEEEEEHHHHHHHHH
T ss_pred             cCCCcEECCCCCHHHHHHHHHhCCCcEEEEE-----C----CCCCEEEEEEHHHHHHHHH
Confidence            2456789999999999999987754322222     4    7899999999999999875

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.04  E-value=8.5e-07  Score=76.65  Aligned_cols=121  Identities=20%  Similarity=0.232  Sum_probs=98.3

Q ss_pred             cccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       291 ~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                      .+++++|.  .++.++++++++.++++.|.+++.+.+||+|+. |+++|++  |.+|++.........       ..+.+
T Consensus         6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Giv--t~~dl~~~~~~~~~~-------~~v~~   76 (130)
T 3i8n_A            6 VPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFV--HRLELFKMQQSGSGQ-------KQLGA   76 (130)
T ss_dssp             -CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEEC--CHHHHHHHHHTTTTT-------SBHHH
T ss_pred             CCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEE--EHHHHHHHHhcCCCc-------CCHHH
Confidence            56899998  456689999999999999999999999999987 8999999  999999776543221       12233


Q ss_pred             ccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          368 EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       368 ~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      .++.+.+++++.++.+..+.|..+..+...+++         ++|+++|+||.+||+++++|
T Consensus        77 ~m~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---------~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           77 VMRPIQVVLNNTALPKVFDQMMTHRLQLALVVD---------EYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             HSEECCEEETTSCHHHHHHHHHHHTCCEEEEEC---------TTSCEEEEEEHHHHHHHHHT
T ss_pred             HhcCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc---------CCCCEEEEEEHHHHHHHHcC
Confidence            334578999999999999999987655444444         78999999999999999998

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=97.98  E-value=1.8e-05  Score=61.42  Aligned_cols=29  Identities=10%  Similarity=0.082  Sum_probs=27.6

Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++|.+++++.++++.|.+++.+.+||+|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d   30 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME   30 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence            57899999999999999999999999998

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=97.98  E-value=1.3e-06  Score=78.52  Aligned_cols=132  Identities=11%  Similarity=0.017  Sum_probs=94.9

Q ss_pred             ccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccc-c
Q 010540          292 PVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD-E  368 (508)
Q Consensus       292 ~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~-~  368 (508)
                      .++++|+  .++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|++..+.......... ....+.+ +
T Consensus        16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGii--t~~Di~~~~~~~~~~~~~~-~~~~v~~im   92 (156)
T 3k6e_A           16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTI--GLRDIMAYQMEHDLSQEIM-ADTDIVHMT   92 (156)
T ss_dssp             TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEE--EHHHHHHHHHHHTCCHHHH-TTSBGGGTC
T ss_pred             cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEE--Eecchhhhhhhcccccccc-cccCHHHhh
Confidence            4788887  5789999999999999999999999999999999999999  9999987665433221000 0011222 2


Q ss_pred             cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC--CccCCCCc
Q 010540          369 KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ--EEIVDETD  437 (508)
Q Consensus       369 ~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg--~eI~dE~d  437 (508)
                      ...+.+++++.++.+..+.|..+.      + ..+||    |+|+++||||.+||++++.+  .|+.||+|
T Consensus        93 ~~~~~~v~~~~~l~~~~~~m~~~~------~-lpVVd----~~g~l~GiiT~~Dil~~~~~~~~~~~~e~~  152 (156)
T 3k6e_A           93 KTDVAVVSPDFTITEVLHKLVDES------F-LPVVD----AEGIFQGIITRKSILKAVNALLHDFSKEYE  152 (156)
T ss_dssp             BCSCCCBCTTCCHHHHHHHTTTSS------E-EEEEC----TTSBEEEEEEHHHHHHHHHHHSCC------
T ss_pred             cCCceecccccHHHHHHHHHHHcC------C-eEEEe----cCCEEEEEEEHHHHHHHHHHHhcccchhhe
Confidence            455778999999999999887542      1 22346    89999999999999999943  15555544

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.96  E-value=1.3e-06  Score=75.63  Aligned_cols=124  Identities=15%  Similarity=0.198  Sum_probs=99.0

Q ss_pred             ccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEec-CCCccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540          292 PVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       292 ~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe-~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      +++++|.  +++.++++++++.++++.|.+++.+.+||+|+ .|+++|++  |.+|+++.........     ...+.+.
T Consensus         3 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGiv--t~~dl~~~~~~~~~~~-----~~~v~~~   75 (130)
T 3hf7_A            3 SVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISML--RVREAYRLMTEKKEFT-----KEIMLRA   75 (130)
T ss_dssp             BHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEE--EHHHHHHHHTSSSCCC-----HHHHHHH
T ss_pred             CHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEE--EHHHHHHHHhccCccc-----hhhHHHh
Confidence            5788886  46889999999999999999999999999975 68999999  9999997765432111     1123334


Q ss_pred             cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCcc
Q 010540          369 KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEI  432 (508)
Q Consensus       369 ~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI  432 (508)
                      ++.+.+++++.++.+..+.|..+..+...+++         |+|+++||||.+|++++++| ||
T Consensus        76 m~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---------~~g~lvGiit~~Dil~~l~g-~i  129 (130)
T 3hf7_A           76 ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---------EYGDIQGLVTVEDILEEIVG-DF  129 (130)
T ss_dssp             SBCCCEEETTCBHHHHHHHHHHHCCCEEEEEC---------TTSCEEEEEEHHHHHHHHHC---
T ss_pred             ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc---------CCCCEEEEeeHHHHHHHHhC-CC
Confidence            46788999999999999999987655444444         78999999999999999999 76

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=97.95  E-value=2e-05  Score=70.41  Aligned_cols=38  Identities=13%  Similarity=0.087  Sum_probs=34.6

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .+|+++|.+ ++++++++++.++++.|.+++.+.+||+|
T Consensus        17 ~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd   54 (159)
T 3fv6_A           17 LQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVD   54 (159)
T ss_dssp             CBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEc
Confidence            569999876 45999999999999999999999999999

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=97.95  E-value=2e-05  Score=69.60  Aligned_cols=39  Identities=26%  Similarity=0.303  Sum_probs=36.6

Q ss_pred             ccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .+++++|.+  +++++++++++.++++.|.+++.+.+||+|
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd   68 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICD   68 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEEC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEEC
Confidence            369999988  899999999999999999999999999999

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.95  E-value=5.7e-06  Score=71.81  Aligned_cols=128  Identities=13%  Similarity=0.170  Sum_probs=99.8

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccccc
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK  369 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~  369 (508)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++.........  ..   .+.+.+
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Giv--t~~dl~~~~~~~~~~~--~~---~v~~~m   78 (138)
T 2yzi_A            6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFF--TKSDIIRRVIVPGLPY--DI---PVERIM   78 (138)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEE--EHHHHHHHTTTTCCCT--TS---BGGGTC
T ss_pred             hhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEE--eHHHHHHHHHhcCCcc--cC---CHHHHh
Confidence            3568999999999999999999999999999999999999999999999  9999974332111110  11   222232


Q ss_pred             -CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCC
Q 010540          370 -TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDE  435 (508)
Q Consensus       370 -~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE  435 (508)
                       ..+.+++++.++.+....|..+..+.. +++         ++|+++|+||..||++.+.+ ++..+
T Consensus        79 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd---------~~g~~~Giit~~dil~~~~~-~~~~~  134 (138)
T 2yzi_A           79 TRNLITANVNTPLGEVLRKMAEHRIKHI-LIE---------EEGKIVGIFTLSDLLEASRR-RLETA  134 (138)
T ss_dssp             BCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE---------ETTEEEEEEEHHHHHHHHHC-CSCCC
T ss_pred             hCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC---------CCCCEEEEEEHHHHHHHHHH-HHHhh
Confidence             457899999999999999987754433 444         68999999999999999987 66544

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=97.94  E-value=3.1e-06  Score=77.41  Aligned_cols=91  Identities=9%  Similarity=0.050  Sum_probs=74.7

Q ss_pred             ccccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEecC-CCccccCCCCCCCccccccccCCCCCCcccccccc
Q 010540          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAK-GKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQ  366 (508)
Q Consensus       290 ~~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~-g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~  366 (508)
                      ..+|+++|.  ++++++++++++.++++.|.+++.+.+||+|+. |+++|++  |.+|++........        ..+.
T Consensus        35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGiv--t~~Dl~~~~~~~~~--------~~v~  104 (173)
T 3ocm_A           35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIG--RAKDLVADLITEGR--------VRRN  104 (173)
T ss_dssp             TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEE--EHHHHHHHHHHHSS--------CCGG
T ss_pred             CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEE--EHHHHHHHHhcCCc--------chhH
Confidence            457999996  468899999999999999999999999999987 8999999  99999976643211        1223


Q ss_pred             cccCCceeecCCCCCccchhhhhcc
Q 010540          367 DEKTESVVVDVDRPLSSGSMNRLSS  391 (508)
Q Consensus       367 ~~~~~~~~V~~~~~l~~~~~~~~~~  391 (508)
                       ..+.+.+++++.++.+.+..|..+
T Consensus       105 -~~~~~~~v~~~~~l~~al~~m~~~  128 (173)
T 3ocm_A          105 -RLRDPIIVHESIGILRLMDTLKRS  128 (173)
T ss_dssp             -GSBCCCEECGGGCHHHHHHHHHHS
T ss_pred             -hcCCCeEECCCCcHHHHHHHHHHc
Confidence             456678999999999998888876

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.93  E-value=7.7e-06  Score=72.78  Aligned_cols=60  Identities=22%  Similarity=0.306  Sum_probs=53.8

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~  287 (508)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+++.+|++.+..
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~  134 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVI  134 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHH
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence            357899999997  788899999999 999999999999999998 4 89999999999997643

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=97.91  E-value=3.3e-06  Score=74.50  Aligned_cols=127  Identities=13%  Similarity=0.048  Sum_probs=97.7

Q ss_pred             cccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       291 ~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      .+++++|.  +++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|+++.+........-......+.+.
T Consensus        15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Giv--t~~dl~~~~~~~~~~~~~~~~~~~v~~~   92 (150)
T 3lqn_A           15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLI--STAMILDGILGLERIEFERLEEMKVEQV   92 (150)
T ss_dssp             CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--EHHHHHHHTBCSSSBCGGGGGGCBGGGT
T ss_pred             CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEE--EHHHHHHHHHhhcccchhHHhcCCHHHH
Confidence            46899998  5689999999999999999999999999999999999999  9999997775332211000011123333


Q ss_pred             c-CCceeecCCCCCccchhhhhcccCCCCcccccccc-cccccCCCceEEeechHHHHHHHhCCcc
Q 010540          369 K-TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIY-ASEDIEDGEVIGIITLEDVFEELLQEEI  432 (508)
Q Consensus       369 ~-~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v-~~~~~E~G~lvGIVTleDIleeivg~eI  432 (508)
                      + ..+.+++++.++.+....|..+..        ++| +    ++|+++|+||..||++.+.+ ++
T Consensus        93 m~~~~~~v~~~~~l~~a~~~~~~~~~--------l~Vvd----~~g~~~Giit~~dil~~l~~-~~  145 (150)
T 3lqn_A           93 MKQDIPVLKLEDSFAKALEMTIDHPF--------ICAVN----EDGYFEGILTRRAILKLLNK-KV  145 (150)
T ss_dssp             CBSSCCEEETTCBHHHHHHHHHHCSE--------EEEEC----TTCBEEEEEEHHHHHHHHHH-HC
T ss_pred             hcCCCceeCCCCCHHHHHHHHHhCCE--------EEEEC----CCCcEEEEEEHHHHHHHHHH-Hh
Confidence            2 456899999999999998876632        333 5    68999999999999999875 54

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=97.90  E-value=1.6e-05  Score=67.31  Aligned_cols=59  Identities=22%  Similarity=0.314  Sum_probs=52.3

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ...+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+++.+|++.+.
T Consensus        60 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt~~dl~~~l  118 (122)
T 3kpb_A           60 NKKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVTSEDISRLF  118 (122)
T ss_dssp             TCCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             cccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEeHHHHHHHh
Confidence            34489999987  778899999998 99999999999999999875 8999999999998654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.85  E-value=6.6e-06  Score=71.85  Aligned_cols=121  Identities=13%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCC--CccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG--KSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g--~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      .+++++|.+++.++++++++.++++.|.+++.+.+||+|+.|  +++|++  |.+|+++.+.......   .   .+.+.
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Giv--t~~dl~~~~~~~~~~~---~---~v~~~   76 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVV--SERDILRAVAQRLDLD---G---PAMPI   76 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEE--EHHHHHHHHHTTCCTT---S---BSGGG
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEE--EHHHHHHHHhcCCCCC---C---CHHHH
Confidence            458899999999999999999999999999999999999988  999999  9999987654332111   1   22233


Q ss_pred             -cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          369 -KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       369 -~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                       .....+++++ ++.+..+.|..+..+...++     +    ++|+++|+||.+||++++.+
T Consensus        77 m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vv-----d----~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           77 ANSPITVLDTD-PVHVAAEKMRRHNIRHVVVV-----N----KNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             CBCCCEEETTS-BHHHHHHHHHHHTCSEEEEE-----C----TTSCEEEEEEHHHHHSCHHH
T ss_pred             cCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEE-----c----CCCcEEEEEEHHHHHHHHHH
Confidence             3467899999 99999999988754443233     4    68999999999999987764

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.84  E-value=6e-06  Score=71.56  Aligned_cols=127  Identities=13%  Similarity=0.127  Sum_probs=95.7

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCc-cccccccCCCCCCcccccccccc
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKK-PKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDl-l~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      ..+++++|.+++.++++++++.++++.|.+++.+.+||+|+.|+++|++  +.+|+ +..+.......      ..+.+.
T Consensus         7 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Giv--t~~dl~~~~~~~~~~~~------~~v~~~   78 (138)
T 2p9m_A            7 NIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIV--TTTDIGYNLIRDKYTLE------TTIGDV   78 (138)
T ss_dssp             TCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEE--EHHHHHHHHTTTCCCSS------CBHHHH
T ss_pred             cCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEE--EHHHHHHHHHhhcccCC------cCHHHH
Confidence            3568999988999999999999999999999999999999999999999  99999 76554322111      122222


Q ss_pred             -cCCceeecCCCCCccchhhhhcccCCCCcccccccc-cccccCCCceEEeechHHHHHHHhC
Q 010540          369 -KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIY-ASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       369 -~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v-~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                       .....+++++.++.+..+.|..+.... ..+..++| +    ++|+++|+||..|+++.+.+
T Consensus        79 m~~~~~~v~~~~~l~~~~~~~~~~~~~~-~~~~~l~Vvd----~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           79 MTKDVITIHEDASILEAIKKMDISGKKE-EIINQLPVVD----KNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             SCSSCCCEETTSBHHHHHHHHTCC------CCCEEEEEC----TTSBEEEEEEHHHHHHHHHH
T ss_pred             hCCCcEEECCCCCHHHHHHHHHhcCCcc-ccccEEEEEC----CCCeEEEEEEHHHHHHHHHh
Confidence             245678999999999999988775110 11223333 4    68999999999999998864

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.82  E-value=7.2e-06  Score=70.66  Aligned_cols=121  Identities=16%  Similarity=0.142  Sum_probs=95.8

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccccc-
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK-  369 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~-  369 (508)
                      .+++++|.+++.++++++++.++++.|.+++.+.+||+| .|+++|++  |.+|++..+.......   .   .+.+.+ 
T Consensus         4 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Giv--t~~dl~~~~~~~~~~~---~---~v~~~~~   74 (133)
T 2ef7_A            4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGII--TERDIVKAIGKGKSLE---T---KAEEFMT   74 (133)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEE--EHHHHHHHHHTTCCTT---C---BGGGTSE
T ss_pred             ccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEE--cHHHHHHHHhcCCCcc---c---CHHHHcC
Confidence            468999988999999999999999999999999999999 88999999  9999987655432211   1   122222 


Q ss_pred             CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ....+++++.++.+..+.|..+..+...++     +    ++|+++|+||..|+++.+..
T Consensus        75 ~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv-----d----~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           75 ASLITIREDSPITGALALMRQFNIRHLPVV-----D----DKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             ECCCCEETTSBHHHHHHHHHHHTCSEEEEE-----C----TTSCEEEEEEHHHHHHHHHH
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEE-----C----CCCeEEEEEEHHHHHHHHHH
Confidence            356789999999999999987754432222     4    68999999999999998875

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.79  E-value=1.2e-05  Score=71.35  Aligned_cols=129  Identities=14%  Similarity=0.058  Sum_probs=98.1

Q ss_pred             cccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          290 ETPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       290 ~~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                      ..+++++|.+  ++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|++...........-......+.+
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Giv--t~~dl~~~~~~~~~~~~~~~~~~~v~~   87 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLI--SMTMMMDAILGLERIEFERLETMKVEE   87 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEE--EHHHHHHHSBCSSSBCGGGGGTCBGGG
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEe--eHHHHHHHHhcccccchHHhcCCcHHH
Confidence            3568999886  889999999999999999999999999999999999999  999998766532111000000112222


Q ss_pred             c-cCCceeecCCCCCccchhhhhcccCCCCcccccccc-cccccCCCceEEeechHHHHHHHhCCccC
Q 010540          368 E-KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIY-ASEDIEDGEVIGIITLEDVFEELLQEEIV  433 (508)
Q Consensus       368 ~-~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v-~~~~~E~G~lvGIVTleDIleeivg~eI~  433 (508)
                      . ...+.+++++.++.+..+.|..+..        ++| +    ++|+++|+||..||++.+.+ ...
T Consensus        88 ~m~~~~~~v~~~~~l~~a~~~m~~~~~--------l~Vvd----~~g~~~Giit~~dil~~~~~-~~~  142 (157)
T 2emq_A           88 VMNRNIPRLRLDDSLMKAVGLIVNHPF--------VCVEN----DDGYFAGIFTRREVLKQLNK-QLH  142 (157)
T ss_dssp             TCBCCCCEEETTSBHHHHHHHHHHSSE--------EEEEC----SSSSEEEEEEHHHHHHHHHH-TTC
T ss_pred             HhCCCCceecCCCcHHHHHHHHhhCCE--------EEEEc----CCCeEEEEEEHHHHHHHHHH-Hhh
Confidence            2 3456799999999999999987732        333 5    67999999999999999986 544

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.75  E-value=2.6e-05  Score=66.10  Aligned_cols=59  Identities=22%  Similarity=0.304  Sum_probs=53.2

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      +.+.+++++|++  ++.++++++++. ++++.|.+++++++||+++  ++++|+++.+|++.+.
T Consensus        62 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l  120 (125)
T 1pbj_A           62 LAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAK  120 (125)
T ss_dssp             TTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             ccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            457889999997  778899999999 9999999999999999986  7999999999998653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.75  E-value=3.5e-05  Score=66.47  Aligned_cols=59  Identities=24%  Similarity=0.383  Sum_probs=53.1

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++.+++||++ + ++++|+++.+|++.+.
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dll~~~  129 (135)
T 2rc3_A           71 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLSIGDLVKDA  129 (135)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             cccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEEHHHHHHHH
Confidence            457899999997  778899999998 999999999999999998 4 7999999999998653

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.75  E-value=5.6e-05  Score=69.22  Aligned_cols=60  Identities=12%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.+++++|.+  ++.++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++.+.
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           72 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEEHHHHTTTS
T ss_pred             cccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            456789999997  778899999999 99999999999999999875 7899999999999653

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.74  E-value=3.3e-05  Score=69.10  Aligned_cols=39  Identities=13%  Similarity=0.070  Sum_probs=36.6

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .+|+++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd   43 (160)
T 2o16_A            5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD   43 (160)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc
Confidence            468999989999999999999999999999999999999

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.73  E-value=2.1e-05  Score=68.89  Aligned_cols=60  Identities=18%  Similarity=0.396  Sum_probs=52.6

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.+++++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|+++..
T Consensus        82 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit~~dil~~~  141 (152)
T 4gqw_A           82 TNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIITRGNVVRAA  141 (152)
T ss_dssp             --CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEEHHHHHHHH
T ss_pred             hccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEEHHHHHHHH
Confidence            356789999998  677899999999 99999999999999999865 8999999999999753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.73  E-value=5.2e-06  Score=87.79  Aligned_cols=134  Identities=15%  Similarity=0.083  Sum_probs=10.6

Q ss_pred             ccccccceeecCCCCHHHHHHHHHhCCCeEEEEEec---CCCccccCCCCCCCccccccccCCCCCCcccccccccccCC
Q 010540          295 AVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA---KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE  371 (508)
Q Consensus       295 dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe---~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~  371 (508)
                      ..|..+++++.++.++.|++++|.+++..-+||+|+   .|+++||+  |.+|+-.+        +..+|..+++.  .+
T Consensus       142 ~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIv--T~RD~rf~--------d~~~~V~evMT--~~  209 (556)
T 4af0_A          142 NGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIV--TGRDVQFQ--------DAETPIKSVMT--TE  209 (556)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEE--eccccccc--------ccceEhhhhcc--cc
Confidence            446788899999999999999999999999999986   67899999  99997431        11122222222  34


Q ss_pred             ceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCccccccceeEEeccc
Q 010540          372 SVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAA  451 (508)
Q Consensus       372 ~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~~~~~~~~~~v~~~  451 (508)
                      .+.+++...+.+.++.+++++..-..++     |    ++|+++|+||..|+...-   +....  ...|..++++|.++
T Consensus       210 lvt~~~~~~leeA~~iL~~~kieklpVV-----d----~~g~LvGlIT~kDi~k~~---~~p~A--~k~d~~grL~VgAA  275 (556)
T 4af0_A          210 VVTGSSPITLEKANSLLRETKKGKLPIV-----D----SNGHLVSLVARSDLLKNQ---NYPYA--SKVPESKQLYCGAA  275 (556)
T ss_dssp             ------------------------------------------------------------CTTC--CBCTTTCCBCCEEE
T ss_pred             eEEecCCCCHHHHHHHHHHccccceeEE-----c----cCCcEEEEEEechhhhhh---hCCcc--hhcchhhceeeEEE
Confidence            6778888888888888877654433333     4    789999999999997762   22211  11234457777777


Q ss_pred             cCh
Q 010540          452 AAA  454 (508)
Q Consensus       452 ~~~  454 (508)
                      +.+
T Consensus       276 Vgv  278 (556)
T 4af0_A          276 IGT  278 (556)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            665

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.71  E-value=5.2e-05  Score=67.20  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=51.5

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      +.+|+++| +  ++.++++++++. ++++.|.+++..++||++++ ++++|+|+.+|++.+.
T Consensus        85 ~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt~~dil~~l  141 (153)
T 3oco_A           85 KAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIITDKDVYEEL  141 (153)
T ss_dssp             TSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEECHHHHHHHH
T ss_pred             CCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEeeHHHHHHHH
Confidence            67899999 4  778999999998 99999999999999999875 7999999999999653

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.69  E-value=1.6e-05  Score=74.75  Aligned_cols=117  Identities=12%  Similarity=0.058  Sum_probs=96.5

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhC---CCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccccc
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKG---SSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQD  367 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~---~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~  367 (508)
                      .+++++|.++++++++++++.++++.|+++   +.+.++|+|+.|+++|++  |.+|++...           +...+.+
T Consensus        54 ~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGiv--t~~dll~~~-----------~~~~v~~  120 (205)
T 3kxr_A           54 NEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTV--RRYDIFKHE-----------PHEPLIS  120 (205)
T ss_dssp             TCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEE--EHHHHTTSC-----------TTSBGGG
T ss_pred             chHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEE--EHHHHHhCC-----------CcchHHH
Confidence            458899999999999999999999999987   789999999999999999  999987531           1112333


Q ss_pred             cc-CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          368 EK-TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       368 ~~-~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      .+ ..+.+++++.++.+..+.|.....+...+++         ++|+++||||.+||++.+.+
T Consensus       121 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD---------~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          121 LLSEDSRALTANTTLLDAAEAIEHSREIELPVID---------DAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC---------TTSBEEEEEEHHHHHHHHHH
T ss_pred             HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc---------CCCeEEEEEEHHHHHHHHHH
Confidence            33 4578999999999999999987655544444         78999999999999999875

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.69  E-value=5.3e-05  Score=68.06  Aligned_cols=60  Identities=20%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~  287 (508)
                      ..+.+|+++|++  ++.++++++++. ++++.|.+++++++||+++  ++++|+|+.+|++.+..
T Consensus        90 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           90 SLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             GGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             cccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            456789999996  788899999999 9999999999999999987  89999999999997654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.66  E-value=3.8e-05  Score=66.04  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=53.0

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.+++++|++  ++.++++++++. ++++.|.+++.+++||+++  ++++|+++.+|+++..
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           71 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARHL  129 (133)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHTC
T ss_pred             ccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            356789999987  778899999999 9999999999999999986  7999999999998754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.66  E-value=1.1e-05  Score=71.96  Aligned_cols=130  Identities=14%  Similarity=0.059  Sum_probs=96.7

Q ss_pred             ccccccccc--cceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540          291 TPVSAVSIR--RIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       291 ~~V~dim~~--~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      .+++++|.+  ++.++++++++.++++.|.+++.+.+||+|+.|+++|++  |.+|++..+........-......+.+.
T Consensus        14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGiv--t~~dl~~~~~~~~~~~~~~~~~~~v~~~   91 (159)
T 1yav_A           14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLI--GTNMIMNSIFGLERIEFEKLDQITVEEV   91 (159)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEE--EHHHHHHHHBCSSSBCGGGTTTSBHHHH
T ss_pred             hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEe--EHHHHHHHhhhhcccchhhhccCCHHHh
Confidence            568899887  899999999999999999999999999999999999999  9999987665322110000001122222


Q ss_pred             c-CCceeecCCCCCccchhhhhcccCCCCcccccccc-cccccCCCceEEeechHHHHHHHhCCccCCC
Q 010540          369 K-TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIY-ASEDIEDGEVIGIITLEDVFEELLQEEIVDE  435 (508)
Q Consensus       369 ~-~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v-~~~~~E~G~lvGIVTleDIleeivg~eI~dE  435 (508)
                      + .....++++.++.+....|.....        ++| +    ++|+++|+||..||++.+.+ ++.++
T Consensus        92 m~~~~~~v~~~~~l~~a~~~m~~~~~--------lpVvd----~~g~~vGiit~~dil~~~~~-~~~~~  147 (159)
T 1yav_A           92 MLTDIPRLHINDPIMKGFGMVINNGF--------VCVEN----DEQVFEGIFTRRVVLKELNK-HIRSL  147 (159)
T ss_dssp             SBCSCCEEETTSBHHHHHHHTTTCSE--------EEEEC----TTCBEEEEEEHHHHHHHHHH-HC---
T ss_pred             cCCCCceEcCCCCHHHHHHHHHhCCE--------EEEEe----CCCeEEEEEEHHHHHHHHHH-HHHhh
Confidence            2 356789999999999888876622        333 5    68999999999999999886 66544

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.64  E-value=4.2e-05  Score=69.17  Aligned_cols=61  Identities=23%  Similarity=0.395  Sum_probs=54.2

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ...+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+|+.+|++++.
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILTRGNVVRAA  154 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHH
Confidence            4567889999997  678899999998 99999999999999999865 8999999999998653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.61  E-value=7.8e-05  Score=72.43  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ...|+++|.+++++|.+++++.++.+.|.+++.+..||||
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd   51 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD   51 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEES
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEe
Confidence            3569999999999999999999999999999999999998

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=97.61  E-value=7.2e-05  Score=66.53  Aligned_cols=40  Identities=15%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ..+++++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd   51 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVE   51 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEES
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEe
Confidence            4568999999999999999999999999999999999998

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.55  E-value=0.00012  Score=63.49  Aligned_cols=39  Identities=10%  Similarity=0.384  Sum_probs=35.2

Q ss_pred             ccccc---cccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSA---VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~d---im~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++++   +|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         8 ~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd   49 (144)
T 2nyc_A            8 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID   49 (144)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEc
Confidence            45667   7778999999999999999999999999999999

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.53  E-value=3.2e-05  Score=82.76  Aligned_cols=109  Identities=14%  Similarity=0.206  Sum_probs=23.2

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccc--
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI--  301 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v--  301 (508)
                      .+.+|+++|+|..+++++++++++. ++++.|.+++++.+||++++ ++++|+|+.+|+++...... ...+.+.+-.  
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~-~~~d~~~~l~v~  235 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHN-ELVDSQKRYLVG  235 (503)
T ss_dssp             -----------------------------------------------------------------CC-CCBCTTSCBCCE
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhccc-chhccccccccc
Confidence            4568999999855699999999999 99999999999999999876 89999999999997654322 1222221111  


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccc
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT  336 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~G  336 (508)
                      ..++. ....+.++.|.+.+.+..+|....|...|
T Consensus       236 a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~  269 (503)
T 1me8_A          236 AGINT-RDFRERVPALVEAGADVLCIDSSDGFSEW  269 (503)
T ss_dssp             EEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHH
T ss_pred             cccCc-hhHHHHHHHHHhhhccceEEecccCcccc
Confidence            23455 66677788888888887555333444444

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.50  E-value=0.00013  Score=64.79  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeE-EEEEe
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHM-AAVVK  329 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~-a~VvD  329 (508)
                      .+++++|.++++++++++++.++++.|.+++.+. +||+|
T Consensus        16 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd   55 (157)
T 1o50_A           16 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR   55 (157)
T ss_dssp             HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE
T ss_pred             ccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEE
Confidence            4689999999999999999999999999999999 99999

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.46  E-value=0.00022  Score=76.32  Aligned_cols=112  Identities=18%  Similarity=0.165  Sum_probs=83.9

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccce
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIP  302 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~  302 (508)
                      -.+.+|+++|++ .++++++++.++. ++++.|.+++...+||+|++ ++++|+++.+|+++..... ..+.+.+.+-.+
T Consensus       172 ~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p-~a~~D~~~rl~V  247 (511)
T 3usb_A          172 DYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFP-NSAKDKQGRLLV  247 (511)
T ss_dssp             CSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCT-TCCBCTTSCBCC
T ss_pred             cCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhcc-cchhhhccceee
Confidence            356789999997 5788999999998 99999999999999999876 8999999999999764321 223343333322


Q ss_pred             --eecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccC
Q 010540          303 --RVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLP  338 (508)
Q Consensus       303 --~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv  338 (508)
                        .+.......+.++.+.+.+.+.+.+....|...|++
T Consensus       248 ~aavg~~~d~~era~aLveaGvd~I~Id~a~g~~~~v~  285 (511)
T 3usb_A          248 GAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVI  285 (511)
T ss_dssp             EEEECSSTTHHHHHHHHHHTTCSEEEEECSCTTSHHHH
T ss_pred             eeeeeeccchHHHHHHHHhhccceEEecccccchhhhh
Confidence              344455567777888888999887776655544444

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.46  E-value=3.7e-05  Score=84.58  Aligned_cols=128  Identities=16%  Similarity=0.073  Sum_probs=97.6

Q ss_pred             ccccccccc--ccceeecCCCCHHHHHHHHH-hCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCC---------
Q 010540          290 ETPVSAVSI--RRIPRVPSDMPLYDILNEFQ-KGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCD---------  357 (508)
Q Consensus       290 ~~~V~dim~--~~v~~V~~~~~l~d~L~~m~-~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~---------  357 (508)
                      +.+|+|+|.  +++.++++++++.|+++.|+ +++.+..||+|+.|+++|++  |.+|+++.+........         
T Consensus       452 ~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiV--t~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          452 EMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAI--SRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEE--SHHHHTTTTTTC--------------
T ss_pred             cCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEE--EHHHHHHHHHHHhhhcccccccccce
Confidence            467999999  89999999999999999999 79999999999999999999  99999976653311000         


Q ss_pred             --------------Cc-------------------cccccc-ccccCCceeecCCCCCccchhhhhcccCCCCccccccc
Q 010540          358 --------------LT-------------------APLLSK-QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLI  403 (508)
Q Consensus       358 --------------l~-------------------~p~~~i-~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~  403 (508)
                                    +.                   .|...+ ..+.+.++.+++++++.+..+.|.++..+.      ++
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~------lp  603 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSM------IY  603 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSE------EE
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCE------EE
Confidence                          00                   000001 124566789999999999999999987665      22


Q ss_pred             ccccccCCCceEEeechHHHHHHHhC
Q 010540          404 YASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       404 v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      |.    |+|+++||||.+||++++..
T Consensus       604 Vv----e~G~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          604 VT----ERGKLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             EE----ETTEEEEEEEGGGTEECCCC
T ss_pred             EE----ECCEEEEEEehhhHHHHHhh
Confidence            22    48999999999999887653

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.38  E-value=5e-05  Score=81.71  Aligned_cols=125  Identities=10%  Similarity=0.025  Sum_probs=97.6

Q ss_pred             ccccccccccceeecCC-CCHHHHHHHHHhCCCeEEEEEe-cCCCccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540          291 TPVSAVSIRRIPRVPSD-MPLYDILNEFQKGSSHMAAVVK-AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~-~~l~d~L~~m~~~~~~~a~VvD-e~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      .+|+++|.+++++++++ +++.++++.|.+++.+.+||+| +.|+++|+|  |.+|+++.+........  .   .+.+.
T Consensus       384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiV--t~~Dll~~l~~~~~~~~--~---~V~~i  456 (527)
T 3pc3_A          384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVV--GQETLITQIVSMNRQQS--D---PAIKA  456 (527)
T ss_dssp             SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEE--EHHHHHHHHHHHCCCTT--S---BGGGG
T ss_pred             CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEE--EHHHHHHHHHhccCcCC--C---cHHHH
Confidence            57999999999999999 9999999999999999999999 889999999  99999977654322111  1   22232


Q ss_pred             -cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          369 -KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       369 -~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                       .....+++++.++.+..+.|.....       ..|++.+.-.+|+++||||.+||++.+..
T Consensus       457 m~~~~~~v~~~~~l~~a~~~m~~~~~-------~pVVd~~~~~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          457 LNKRVIRLNESEILGKLARVLEVDPS-------VLILGKNPAGKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             EETTCCEEETTSBHHHHHHHHTTCSE-------EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred             hcCCCeEECCCCcHHHHHHHHhhCCE-------EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence             3556799999999999998865421       24556111115999999999999999986

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.37  E-value=0.00018  Score=65.34  Aligned_cols=59  Identities=14%  Similarity=0.170  Sum_probs=52.8

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.+|+++|++  ++.++++++++. ++++.|.+++++++||++ + ++++|+|+.+|++.+.
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd-~-g~~vGiit~~dll~~l  163 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTH-N-GRLLGIITKKDVLKHI  163 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHH-HHHHHHHhCCCcEEEEEE-C-CEEEEEEEHHHHHHHH
Confidence            456789999987  788999999999 999999999999999998 3 8999999999998653

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4

Probab=97.29  E-value=6.8e-05  Score=63.78  Aligned_cols=56  Identities=11%  Similarity=-0.080  Sum_probs=31.6

Q ss_pred             ccCCCCccccccce-----eEEeccccChHHHhhcCCCC--CCcc-ccCccccCCcc--cCCCCCC
Q 010540          431 EIVDETDEYVDVHK-----RIRVAAAAAASSVARAPSSR--RLIG-QKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       431 eI~dE~d~~~~~~~-----~~~v~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~g~~--~~~~~~~  486 (508)
                      ||.||||.....+.     +|+|+|.++++++|+.+|++  .+.+ +.+.-|+|||.  .-|+.+.
T Consensus        17 ~I~DE~D~ee~~i~~~~dg~~~v~G~~~l~dl~e~lg~~~~l~~~~~~~~dTlgGlil~~lg~iP~   82 (113)
T 3ded_A           17 LYFQGHDGEEDEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPS   82 (113)
T ss_dssp             ----------CCEEECTTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCC
T ss_pred             cCcCCCCCCCCceEEecCCEEEEecccCHHHHHHHhCCCccCCcccCCCCccHHHHHHHHhCCCCC
Confidence            89999997544333     59999999999999999998  5431 23344569993  3355443

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.26  E-value=0.00024  Score=69.71  Aligned_cols=61  Identities=16%  Similarity=0.294  Sum_probs=54.1

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~  287 (508)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++.+.+||++++ ++++|+|+..|++....
T Consensus       196 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          196 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             CTTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC-
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHH
Confidence            357889999986  788999999998 99999999999999999865 89999999999997643

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.12  E-value=0.00031  Score=69.37  Aligned_cols=60  Identities=15%  Similarity=0.280  Sum_probs=53.6

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.+|+++|++  +++++++++++. ++++.|.+++.+.+||++++ ++++|+|+..|++...
T Consensus       198 ~~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i  257 (286)
T 2oux_A          198 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVI  257 (286)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHH
T ss_pred             CCCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHH
Confidence            357789999987  788899999998 99999999999999999865 8999999999998653

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.11  E-value=0.00018  Score=76.34  Aligned_cols=120  Identities=18%  Similarity=0.200  Sum_probs=98.6

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhC-----CCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccc
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKG-----SSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLS  364 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~-----~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~  364 (508)
                      +.+++++|.++++++++++++.++++.|+++     +....||+|+.|+++|++  |.+|++...           +...
T Consensus       154 ~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiV--t~~Dll~~~-----------~~~~  220 (473)
T 2zy9_A          154 EDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVL--SLRDLIVAD-----------PRTR  220 (473)
T ss_dssp             TTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEE--EHHHHHHSC-----------TTSB
T ss_pred             CCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEE--EHHHHhcCC-----------CCCc
Confidence            4568999999999999999999999999875     578999999999999999  999998531           1112


Q ss_pred             ccccc-CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCcc
Q 010540          365 KQDEK-TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEI  432 (508)
Q Consensus       365 i~~~~-~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI  432 (508)
                      +.+.+ +..+++++++++.+..+.|+++..+...+++         ++|+++|+||.+||++.+.+ +.
T Consensus       221 v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD---------e~g~lvGiIT~~Dil~~i~~-e~  279 (473)
T 2zy9_A          221 VAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD---------EEGRLVGIVTVDDVLDVLEA-EA  279 (473)
T ss_dssp             GGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC---------TTSBEEEEEEHHHHHHHHHH-HH
T ss_pred             HHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc---------CCCEEEEEEehHhhHHHHHH-Hh
Confidence            33333 5678999999999999999988665544444         89999999999999999876 53

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4

Probab=96.76  E-value=0.00038  Score=56.87  Aligned_cols=40  Identities=10%  Similarity=0.055  Sum_probs=30.8

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|+++++++|+.+|++.+.++++|  +|||.  .-|+.+.
T Consensus        17 ~~~v~G~~~l~dl~~~l~~~l~~~~~~T--lgG~i~~~lg~iP~   58 (93)
T 2r2z_A           17 EYLVQGRMLIDEFNEVFETDLHMSDVDT--MAGYLITALGTIPD   58 (93)
T ss_dssp             EEEEETTSBHHHHHHHHTCCCCCTTCCB--HHHHHHHHHSSCCC
T ss_pred             EEEEECCCCHHHHHHHhCCCCCCCCccc--HHHHHHHHhCCCCC
Confidence            6999999999999999999876655555  59993  3344443

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.53  E-value=0.0016  Score=69.28  Aligned_cols=105  Identities=18%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccc----cccc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSA----VSIR  299 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~d----im~~  299 (508)
                      .+.+++++|++  +++++++++++. ++++.|.+++.+.+||++++ ++++|+++.+|+++...... ...+    ++..
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~~~~~-~~~~~~g~~~v~  222 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARKKYKN-AVRDENGELLVA  222 (486)
T ss_dssp             ---------------------------------------------------------------CCTT-CCBCTTSCBCCE
T ss_pred             CCCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhhhccc-cccccCCceeec
Confidence            35689999987  788999999999 99999999999999999865 78999999999997654221 1111    1111


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEe-cCCCccccC
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK-AKGKSKTLP  338 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD-e~g~i~Giv  338 (508)
                      .  .++.+ . .+.+..+.+.+.+.. |+| ..|...+++
T Consensus       223 ~--~~~~~-~-~~~a~~l~~~gvd~l-vvdta~G~~~~~L  257 (486)
T 2cu0_A          223 A--AVSPF-D-IKRAIELDKAGVDVI-VVDTAHAHNLKAI  257 (486)
T ss_dssp             E--EECTT-C-HHHHHHHHHTTCSEE-EEECSCCCCHHHH
T ss_pred             c--eechh-h-HHHHHHHHHhcCCce-EEEecCCcEeehh
Confidence            1  23333 3 556777888888775 555 344444444

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=96.49  E-value=0.0008  Score=54.74  Aligned_cols=40  Identities=20%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|.++++++|+.+|++.+.++++|  +|||.  .-|+.+.
T Consensus        19 ~~~v~G~~~l~dl~~~l~~~l~~~~~dT--lgG~i~~~lg~iP~   60 (91)
T 2pli_A           19 RWRIHAATEIEDINTFFGTEYSSEEADT--IGGLVIQELGHLPV   60 (91)
T ss_dssp             EEEEETTCBHHHHHHHHCCCCCCSSCCB--HHHHHHHHHSSCCC
T ss_pred             EEEEEcCCCHHHHHHHhCCCCCCCCCcc--HHHHHHHHhCCCCC
Confidence            6999999999999999999876655555  59993  2344443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.14  E-value=0.0023  Score=68.06  Aligned_cols=115  Identities=13%  Similarity=0.066  Sum_probs=94.8

Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe--cCCCccccCCCCCCCccccccccCCCCCCcccccccccccC
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK--AKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKT  370 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD--e~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~  370 (508)
                      ++++|..++.++++++++.++++.|.+++.+.+||+|  +.|+++|++  |.+|++....          +...+.+.+.
T Consensus        92 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGiv--t~~Dl~~~~~----------~~~~v~~im~  159 (491)
T 1zfj_A           92 SENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGII--TNRDMRFISD----------YNAPISEHMT  159 (491)
T ss_dssp             HTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEE--EHHHHHHCSC----------SSSBTTTSCC
T ss_pred             HHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEE--EHHHHhhhcc----------CCCcHHHHcC
Confidence            5788989999999999999999999999999999999  889999999  9999985421          1112233333


Q ss_pred             --CceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHh
Q 010540          371 --ESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (508)
Q Consensus       371 --~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeiv  428 (508)
                        .+++++++.++.+..+.|..+..+...+++         ++|+++|+||.+||++.+.
T Consensus       160 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd---------~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          160 SEHLVTAAVGTDLETAERILHEHRIEKLPLVD---------NSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             CSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC---------TTSBEEEEEEHHHHHHHHH
T ss_pred             CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---------CCCcEEEEEEHHHHHHHHh
Confidence              578999999999999999988665544444         7999999999999999986

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0

Probab=94.37  E-value=0.01  Score=47.16  Aligned_cols=40  Identities=20%  Similarity=0.086  Sum_probs=31.1

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|.++++|+|+.+|++..+++++|  +|||.  .-|+.+.
T Consensus        10 ~~~v~G~~~l~dl~~~l~~~l~~~~~~T--l~G~i~~~lg~iP~   51 (83)
T 3llb_A           10 DFIVKALTPVDAFNDFFGSEFSDEEFDT--VGGLVMSAFGHLPK   51 (83)
T ss_dssp             CEEEETTCBHHHHHHHHCCCCCTTTCSB--HHHHHHHHHSSCCC
T ss_pred             EEEEEccCCHHHHHHHhCCCCCCCCCcC--HHHHHHHHhCcCCC
Confidence            6999999999999999999877665665  59993  3344443

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4

Probab=94.29  E-value=0.012  Score=47.19  Aligned_cols=40  Identities=10%  Similarity=-0.012  Sum_probs=31.2

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|.++++|+|+.+|++.++++++|+  |||.  .-|+.+.
T Consensus         9 ~~~v~G~~~l~dl~~~l~~~l~~~~~dTl--~G~v~~~lg~iP~   50 (87)
T 2rk5_A            9 TYIVLGTMTLNDFNEYFETDLESDNVDTI--AGFYLTGVGTIPS   50 (87)
T ss_dssp             EEEEETTSBHHHHHHHHTCCCCCTTCCBH--HHHHHHHHCSCCC
T ss_pred             EEEEEccCCHHHHHHHhCCCCCCCCcccH--HHHHHHHhCcCCC
Confidence            69999999999999999998766555554  9993  3355443

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*

Probab=94.29  E-value=0.011  Score=46.73  Aligned_cols=40  Identities=8%  Similarity=-0.001  Sum_probs=31.3

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~  486 (508)
                      +|.|+|.++++|+|+.+|++.++++++|  +|||  ..-|+.+.
T Consensus        10 ~~~v~g~~~l~dl~~~l~~~l~~~~~~T--l~G~i~~~lg~iP~   51 (81)
T 3lae_A           10 SMIIDGSANLRDLNKMFNWELDTEDART--FNGLILEHLEEIPD   51 (81)
T ss_dssp             CEEEETTCBHHHHHHHHCCCCCCSSCSB--HHHHHHHHCSSCCC
T ss_pred             EEEEEeeCCHHHHHHHhCCCCCCCCCcc--HHHHHHHHhCCCCC
Confidence            6999999999999999999877665655  5999  33445443

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*

Probab=94.13  E-value=0.012  Score=47.92  Aligned_cols=40  Identities=8%  Similarity=0.021  Sum_probs=27.6

Q ss_pred             eEEeccccChHHHhhcCCCCCCc---cccCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLI---GQKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|.++++|+++.+|++.++   ++++  |+|||.  .-|+.+.
T Consensus        19 ~~~v~G~~~l~dl~~~l~~~l~~~~~~~~d--TlgG~i~~~lg~iP~   63 (94)
T 2oai_A           19 SFLIDGTLPIEELREVLGAELPDGEENNYH--TLAGMCISYFGRIPH   63 (94)
T ss_dssp             CEEEETTCBHHHHHHHHTC-------CCCS--BHHHHHHHHHSSCCC
T ss_pred             eEEEeccCCHHHHHHHhCCCCCcccCCCCc--cHHHHHHHHhCCCCC
Confidence            69999999999999999998765   3444  559993  3354443

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=94.12  E-value=0.014  Score=47.37  Aligned_cols=40  Identities=13%  Similarity=0.005  Sum_probs=29.9

Q ss_pred             eEEeccccChHHHhhcCCCC-CC-ccccCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSR-RL-IGQKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|.++++++|+.+|++ .+ +++++  |+|||.  .-|+.+.
T Consensus        18 ~~~v~G~~~l~dl~~~l~~~~l~~~~~~~--Tl~G~i~~~lg~iP~   61 (92)
T 2o3g_A           18 SLTVEGALEYVELAPQLNLPQQEEDADFH--TVAGLIMEELQTIPD   61 (92)
T ss_dssp             CSEEETTCBHHHHTTTTTCCCCCTTCSCS--BHHHHHHHHHTSCCC
T ss_pred             EEEEEccCCHHHHHHHhCCCCCCcCCCcc--cHHHHHHHHhCCCCC
Confidence            69999999999999999998 55 34455  559993  3354443

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4

Probab=94.09  E-value=0.014  Score=48.35  Aligned_cols=32  Identities=16%  Similarity=0.122  Sum_probs=27.8

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ  478 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  478 (508)
                      +|+|+|.++++|+|+.+|++..+++++|+  |||
T Consensus        13 ~~~v~G~~~l~dl~~~lg~~l~~e~~dTl--gGl   44 (101)
T 2p3h_A           13 KWLIDGDTPLDEVERAIGYELPEGDYETI--SGL   44 (101)
T ss_dssp             EEEEETTCBHHHHHHHHTSCCCCSSCCBH--HHH
T ss_pred             EEEEEccCCHHHHHHHhCCCCCCCCCccH--HHH
Confidence            69999999999999999998766555554  999

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4

Probab=94.08  E-value=0.019  Score=45.90  Aligned_cols=41  Identities=17%  Similarity=0.077  Sum_probs=29.7

Q ss_pred             eEEeccccChHHHhhcCCCC-CCccccCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSR-RLIGQKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|.++++|+|+.+|++ .+. +.+.-|+|||.  .-|+.+.
T Consensus        10 ~~~v~G~~~l~dl~~~l~~~~l~~-~~~~~Tl~G~i~~~lg~iP~   53 (86)
T 2p4p_A           10 SWLIDGATPLEDVMRALNIHTFPR-DENYETIGGFMMYMLRXIPX   53 (86)
T ss_dssp             EEEEETTSBHHHHHHHTTCCCSCC-SCSSCBHHHHHHHHHCSCCC
T ss_pred             EEEEEccCCHHHHHHHhCCCCCCc-CCCCccHHHHHHHHhCCCCC
Confidence            69999999999999999996 543 22344559993  3354443

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4

Probab=93.84  E-value=0.018  Score=46.47  Aligned_cols=33  Identities=6%  Similarity=-0.056  Sum_probs=27.4

Q ss_pred             eEEeccccChHHHhhcCCCCCCc--cccCccccCCcc
Q 010540          445 RIRVAAAAAASSVARAPSSRRLI--GQKGAANQGGQS  479 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~  479 (508)
                      +|+|+|.++++++|+.+|++.++  ++++  |+|||.
T Consensus        16 ~~~v~G~~~l~dl~~~l~~~l~~~~~~~~--TlgG~i   50 (90)
T 2p13_A           16 TWLMDGWISIRKASNLLEHDLVDEAERYS--TLGGYL   50 (90)
T ss_dssp             CEEEETTSBHHHHHHHHTSCCCCTTCCCC--BHHHHH
T ss_pred             EEEEECcCCHHHHHHHHCCCCCCcCCCCc--cHHHHH
Confidence            69999999999999999997765  3444  559993

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4

Probab=93.15  E-value=0.023  Score=45.37  Aligned_cols=42  Identities=12%  Similarity=-0.010  Sum_probs=30.3

Q ss_pred             eEEeccccChHHHhhcCCCC-CCccc-cCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSR-RLIGQ-KGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|.++++++|+.++++ .++++ .+.-|+|||.  .-|+.+.
T Consensus        10 ~~~v~G~~~l~dl~~~l~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~   55 (86)
T 2pls_A           10 SWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQ   55 (86)
T ss_dssp             CEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCC
T ss_pred             eEEEEcccCHHHHHHHhCCCcCCCccCCCcccHHHHHHHHhCCCCC
Confidence            69999999999999999998 65411 2344569993  3355443

>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4

Probab=89.60  E-value=0.083  Score=42.75  Aligned_cols=40  Identities=10%  Similarity=-0.043  Sum_probs=28.2

Q ss_pred             eEEeccccChHHHhhcCCCCCCcc-----ccCccccCCcc--cCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIG-----QKGAANQGGQS--KQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~--~~~~~~~  486 (508)
                      +|+|+|.++++++|+.+|+  +.+     ..+.-|+|||.  .-|+.+.
T Consensus        16 ~~~v~G~~~l~dl~~~l~~--~~~~~~~~~~~~~TlgG~i~~~lg~iP~   62 (93)
T 2nqw_A           16 SYLFEGKTSLSDVRHYLDL--PENAFGELGDEVDTLSGLFLEIKQELPH   62 (93)
T ss_dssp             CEEEETTCBHHHHHHHHTC--CTTTTHHHHTTCSBHHHHHHHHHCSCCC
T ss_pred             EEEEEcccCHHHHHHHhCC--CcccccccCCCcccHHHHHHHHhCcCCC
Confidence            6999999999999999999  321     02344569993  3355443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	508
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	2e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	5e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.002
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.003
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.003

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 11/125 (8%), Positives = 38/125 (30%), Gaps = 20/125 (16%)

Query: 223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSL 282
           +      + +         D + ++  +A   ++  G    P++    ++ +G+L +   
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 68

Query: 283 LTV-------------------RPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSH 323
           + +                              S + +  +  +  L+D ++   +   H
Sbjct: 69  INILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIH 128

Query: 324 MAAVV 328
              V+
Sbjct: 129 RLPVI 133

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 11/148 (7%)

Query: 292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEA 351
           PV      ++  +  ++ L   +    +       V+    K   +  + +  K      
Sbjct: 3   PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIK------ 56

Query: 352 KGGDCDLTAPLLSKQDEKTESVVVDV-DRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIE 410
                   A      D     VV DV    L +       +   ++     +       +
Sbjct: 57  ----QLAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK 112

Query: 411 DGEVIGIITLEDVFEELLQEEIVDETDE 438
           D  + GIIT  D+   L    ++++  E
Sbjct: 113 DNTIRGIITERDLLIALHHILVMEKFKE 140

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 13/153 (8%), Positives = 35/153 (22%), Gaps = 25/153 (16%)

Query: 208 ELTHDETTIISGALD-LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVY 266
           ++   +   +      +  +T+ + +         DV       ++  +        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLF-VKTSLSLLTLNNIVSAPLW 59

Query: 267 SGNPKNIIGLLLVKSLLTV-----------------------RPETETPVSAVSIRRIPR 303
                   GLL +   + V                                         
Sbjct: 60  DSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIY 119

Query: 304 VPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKT 336
           V     L D      K  +    ++   G++ +
Sbjct: 120 VHPMHSLMDACLAMSKSRARRIPLIDVDGETGS 152

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 410 EDGEVIGIITLEDVFEELLQEEIVDETDEY 439
           + G V+GI+TL D+   L +  I D    +
Sbjct: 108 DPGRVVGIVTLTDLSRYLSRASITDILLSH 137

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 13/143 (9%)

Query: 290 ETPVSAVSI---RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-SKTLPPMTDGKK 345
           + P+  ++I     +       P+ D++    +G      ++   G              
Sbjct: 5   KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 64

Query: 346 PKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYA 405
            K          +   L+ + D+         +  LS+   N   +        +     
Sbjct: 65  IKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD----- 119

Query: 406 SEDIEDGEVIGIITLEDVFEELL 428
               + G ++G++TL D+ + +L
Sbjct: 120 ----DVGRLVGVLTLSDILKYIL 138

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 1/138 (0%)

Query: 293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAK 352
           V  +   +   V  D P+ +I++   +        V    K   + P+            
Sbjct: 6   VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMH-LLKVSGFHF 64

Query: 353 GGDCDLTAPLLSKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDG 412
            G       + S           ++        M+            N +       E G
Sbjct: 65  FGFIPKEELIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG 124

Query: 413 EVIGIITLEDVFEELLQE 430
           E++G +   ++   L + 
Sbjct: 125 EIVGDLNSLEILLALWKG 142

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDC 356
           +   I  V +  P+Y  L  F +       VV  KG+   +    D       +      
Sbjct: 18  TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLD 77

Query: 357 DLTAPLLSKQDEKTESVV-VDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVI 415
                 L  +    E V+   +   L +     + +        +         E   V 
Sbjct: 78  VSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD---------EHDVVK 128

Query: 416 GIITLEDVFEELLQE 430
           GI++L D+ + L+  
Sbjct: 129 GIVSLSDILQALVLT 143

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 22/154 (14%), Positives = 48/154 (31%), Gaps = 15/154 (9%)

Query: 290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGK-------SKTLPPMTD 342
              +     R +  V    PL   L      +S    VV ++G        +  L     
Sbjct: 3   GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62

Query: 343 GKKPKLNEAKGGDCDLTAPLLSKQDEKTESVVVDVDRPLSS-GSMNRLSSSQRSDSTTNG 401
            +  K  E      +             +  +   ++P++   + + + ++         
Sbjct: 63  VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122

Query: 402 LIYASEDI-------EDGEVIGIITLEDVFEELL 428
           L  A   I        +G++IG+I   D+ + L+
Sbjct: 123 LKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	508
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.76
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.72
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.72
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.71
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.7
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.7
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.7
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.69
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.69
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.69
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.68
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.68
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.68
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.67
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.67
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.66
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.64
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.63
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.6
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.59
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.58
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.56
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.56
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.54
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.5
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.31
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.21
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.19
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.16
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.14
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.12
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.09
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.08
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.05
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.03
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.02
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.97
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	97.93
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	97.91
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	97.88
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.86
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.85
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.83
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.77
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.67
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.67
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.64
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.61
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.6
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.35
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.3
d2o3ga1	76	Putative protein NMB1485 {Neisseria meningitidis [	96.14
d2p13a1	85	Uncharacterized protein NE2227 {Nitrosomonas europ	95.61
d2p4pa1	82	Hypothetical protein HD1797 {Haemophilus ducreyi [	95.55
d2rk5a1	84	Putative hemolysin SMU1693 {Streptococcus mutans [	95.51
d2o1ra1	78	Hypothetical protein HI0107 {Haemophilus influenza	95.36
d2r2za1	84	Putative hemolysin EF0700 {Enterococcus faecalis [	95.15
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	95.13
d2p3ha1	98	Uncharacterized protein Cgl1194/Cg1349 {Corynebact	94.78
d2plsa1	84	Hypothetical protein CT0541 {Chlorobium tepidum [T	93.96
d3deda1	87	Probable hemolysin CV0231 {Chromobacterium violace	93.73
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	93.56
d2nqwa1	87	Hypothetical protein PG0272 {Porphyromonas gingiva	92.18

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=5.1e-19  Score=154.18  Aligned_cols=101  Identities=18%  Similarity=0.270  Sum_probs=89.8

Q ss_pred             ccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---------Ccccccc
Q 010540          225 EKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---------TETPVSA  295 (508)
Q Consensus       225 ~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---------~~~~V~d  295 (508)
                      +.+|+++|+|.+++++++++++++ ++++.|.+++++++||++++ ++++|+++.+|++.....         ...++++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~   78 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEE   78 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccccccccccccccccc
Confidence            468999999999999999999999 99999999999999999876 899999999999865322         2357889


Q ss_pred             cccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       296 im~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +|.++++++++++++.+++..|.+++  ++||+|
T Consensus        79 ~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd  110 (132)
T d1yava3          79 VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN  110 (132)
T ss_dssp             HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC
T ss_pred             cccccccccccchhHHHHHHHHHhCC--EEEEEc
Confidence            99999999999999999999997654  589998

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.72  E-value=9.2e-18  Score=145.16  Aligned_cols=102  Identities=17%  Similarity=0.256  Sum_probs=92.5

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC---Ccccccccccc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE---TETPVSAVSIR  299 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~---~~~~V~dim~~  299 (508)
                      |++.+|+++|++  +++++++++++. ++++.|.+++++++||+++  ++++|+++.+|+++....   ...++.++|.+
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccccchhhhhhhh
Confidence            467899999997  899999999999 9999999999999999985  689999999999875332   34678999999


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  105 (127)
T d2ef7a1          76 SLITIREDSPITGALALMRQFNIRHLPVVD  105 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccccccccchhHHHHHHHHcCceEEEEEe
Confidence            999999999999999999999999999999

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=2.2e-17  Score=141.57  Aligned_cols=98  Identities=12%  Similarity=0.059  Sum_probs=90.3

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeec
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~  305 (508)
                      ++|+++|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+++...  +.++.++|.+++.+++
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~--~~~v~~~~~~~~~~v~   74 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL--DSSVFNKVSLPDFFVH   74 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT--TSBSGGGCBCTTCCEE
T ss_pred             CCchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhc--cccccccccCccEEEC
Confidence            478999997  888999999999 99999999999999999765 89999999999997643  4679999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       306 ~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++.++++.|.+++.+.+||+|
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd   98 (121)
T d1vr9a3          75 EEDNITHALLLFLEHQEPYLPVVD   98 (121)
T ss_dssp             TTSBHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCCCHHHHHHHHHhcCceeeeeEC
Confidence            999999999999999999999999

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=6.1e-18  Score=145.37  Aligned_cols=98  Identities=16%  Similarity=0.212  Sum_probs=71.9

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccceeec
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVP  305 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~  305 (508)
                      ++|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....  ..++.++|.+++++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~--~~~~~~~~~~~~~~v~   74 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD--EEQLAMLVKRDVPVVK   74 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEESSCC------------CCCBSCCCEEE
T ss_pred             CCcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhc--ccchhhccccceeecc
Confidence            478999998  888999999999 99999999999999999875 89999999999986533  4578899999999999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          306 SDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       306 ~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++.++++.|.+++.+.+||+|
T Consensus        75 ~~~~l~~~~~~~~~~~~~~lpVvd   98 (122)
T d2yzqa2          75 ENDTLKKAAKLMLEYDYRRVVVVD   98 (122)
T ss_dssp             TTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhHHHHHHHHHHHcCcEEEEEEe
Confidence            999999999999999999999999

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=2.3e-18  Score=151.20  Aligned_cols=100  Identities=15%  Similarity=0.225  Sum_probs=90.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----------Ccccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----------TETPVSA  295 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----------~~~~V~d  295 (508)
                      .+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+.+....          ...++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            479999998  789999999999 99999999999999999876 789999999999754311          2367999


Q ss_pred             cccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       296 im~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        78 im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd  111 (141)
T d3ddja1          78 VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILN  111 (141)
T ss_dssp             HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             HhCcccccccccchhhHHHHHHHHcCCCEEEEEc
Confidence            9999999999999999999999999999999999

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.70  E-value=6e-18  Score=154.61  Aligned_cols=122  Identities=11%  Similarity=0.138  Sum_probs=104.4

Q ss_pred             ChhHHHHHHHhhcC-cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC
Q 010540          210 THDETTIISGALDL-TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE  288 (508)
Q Consensus       210 ~~~E~~~i~~vl~l-~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~  288 (508)
                      .+.|+..++.+.+| .+.++.|+|++..++++++++.++. ++++.|.+++++++||++++.++++|+++.+|++.....
T Consensus         3 ~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1           3 QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            35678888888886 8999999999888999999999999 999999999999999999766899999999999753210


Q ss_pred             ---------C--------------cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCC
Q 010540          289 ---------T--------------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKG  332 (508)
Q Consensus       289 ---------~--------------~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g  332 (508)
                               .              ...+..+|.++++++++++++.+++..|.+++.|.+||+|++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g  148 (179)
T d2ooxe1          82 YYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG  148 (179)
T ss_dssp             HHHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECT
T ss_pred             ccccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCC
Confidence                     0              0123445778999999999999999999999999999999644

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=2.6e-17  Score=146.91  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=91.6

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC---------------
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP---------------  287 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~---------------  287 (508)
                      +.+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....               
T Consensus         1 ~~~~~v~~~m~r--~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           1 YKGVEIEPYYQR--YVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGGCBSTTTSBS--CCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCCHHHHhcC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            468899999987  899999999999 99999999999999999876 89999999999964211               


Q ss_pred             -------------------CCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          288 -------------------ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       288 -------------------~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                                         ....++.++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd  137 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR  137 (156)
T ss_dssp             --------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe
Confidence                               012478899999999999999999999999999999999999

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.70  E-value=2.7e-17  Score=142.37  Aligned_cols=97  Identities=18%  Similarity=0.180  Sum_probs=88.7

Q ss_pred             ccccccccccceEEEeCCCCchHHHHHHHHHcC-----CcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccc
Q 010540          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI  301 (508)
Q Consensus       227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~-----~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v  301 (508)
                      ||+.+|++  +++++++++++. ++++.|++++     .+.+||++++ ++++|++..+++.....  ..+++++|.+++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~~--~~~v~~im~~~~   75 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVNDD--DTLIADILNERV   75 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSCT--TSBHHHHSBSCC
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccccc--cEEhhhhccCCC
Confidence            78999997  999999999999 9999998774     6789999876 89999999999986543  467999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++++++.++++.|.+++.+.+||+|
T Consensus        76 ~~v~~~~~l~~a~~~m~~~~~~~lPVVD  103 (127)
T d2ouxa2          76 ISVHVGDDQEDVAQTIRDYDFLAVPVTD  103 (127)
T ss_dssp             CCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             ccCCCCCCHHHHHHHHHHhCCEEEEEEe
Confidence            9999999999999999999999999999

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.2e-17  Score=143.53  Aligned_cols=100  Identities=13%  Similarity=0.227  Sum_probs=89.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----Cccccccccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRR  300 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~V~dim~~~  300 (508)
                      .||+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....     ....++++|.++
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~   76 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS   76 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTC
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeecc
Confidence            489999997  899999999999 99999999999999999865 799999999998753221     234678898899


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++++++++.++++.|.+++.+.+||+|
T Consensus        77 ~~~v~~~~~~~~~~~~m~~~~~~~lpVvd  105 (123)
T d1y5ha3          77 IYYVDANASIQEMLNVMEEHQVRRVPVIS  105 (123)
T ss_dssp             CCCEETTCCHHHHHHHHHHHTCSEEEEEE
T ss_pred             ceeeeecchHHHHHHHHHHcCceEEEEEE
Confidence            99999999999999999999999999998

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.69  E-value=3.3e-17  Score=141.68  Aligned_cols=101  Identities=15%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             cccccccccc-cceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----Ccccccccccc
Q 010540          226 KTAEEAMTPI-ESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIR  299 (508)
Q Consensus       226 ~~V~dIMtpr-~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~V~dim~~  299 (508)
                      .||+|||+.+ .+++++++++++. ++++.|.+++++.+||+++  ++++|+++.+|+++....     ...+++++|.+
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~   78 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR   78 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcccccceeEeeeccc
Confidence            4799999753 4799999999999 9999999999999999984  789999999999764311     23679999999


Q ss_pred             cceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          300 RIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       300 ~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.++.+++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  108 (127)
T d2rc3a1          79 QVAYVDLNNTNEDCMALITEMRVRHLPVLD  108 (127)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             eeEEeccCccHHHHHHHHHHCCCcEEEEEE
Confidence            999999999999999999999999999998

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.69  E-value=2e-17  Score=145.21  Aligned_cols=100  Identities=24%  Similarity=0.272  Sum_probs=90.2

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC------------Ccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE------------TETPV  293 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~------------~~~~V  293 (508)
                      ++|+|+|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....            ...++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            479999998  889999999999 99999999999999999876 899999999999754311            23579


Q ss_pred             cccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          294 SAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       294 ~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus        78 ~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  113 (139)
T d2o16a3          78 FEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA  113 (139)
T ss_dssp             HHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE
T ss_pred             hHhhccccccccccchHHHHHHHHHHcCceEEEEEE
Confidence            999999999999999999999999999999999998

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.68  E-value=6.8e-17  Score=142.46  Aligned_cols=100  Identities=23%  Similarity=0.262  Sum_probs=90.6

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC-----Cccccccccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE-----TETPVSAVSIRR  300 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~-----~~~~V~dim~~~  300 (508)
                      ++|+|+|++  ++.++++++++. ++++.|.+++++.+||++++ ++++|+++.+|+++....     ...+++++|.++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~   78 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKP   78 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSS
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhcccccccccccccccc
Confidence            579999997  899999999999 99999999999999999876 899999999999764321     235789999999


Q ss_pred             ceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          301 IPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       301 v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.+++++.++++.|.+++.+.+||+|
T Consensus        79 ~~~v~~~~~l~~~~~~m~~~~~~~lpVvd  107 (142)
T d1pvma4          79 IPKVKSDYDVKDVAAYLSENGLERCAVVD  107 (142)
T ss_dssp             CCEEETTCBHHHHHHHHHHHTCSEEEEEC
T ss_pred             cccccchhhHHHHHHHHHHcCCcEEEEEe
Confidence            99999999999999999999999999999

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=3e-17  Score=145.21  Aligned_cols=97  Identities=16%  Similarity=0.209  Sum_probs=88.2

Q ss_pred             ccccccccccceEEEeCCCCchHHHHHHHHHcC-----CcEEEEeeCCCCcEEEEeEHhHHhccCCCCcccccccccccc
Q 010540          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARG-----HSRVPVYSGNPKNIIGLLLVKSLLTVRPETETPVSAVSIRRI  301 (508)
Q Consensus       227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~-----~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v  301 (508)
                      ||+++|++  +++++++++|+. ++++.|++++     .+.+||++++ ++++|+++.+|+.....  ..++.++|.+++
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~--~~~v~~im~~~~   75 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP--RTRVAEIMNPKV   75 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCT--TCBSTTTSBSSC
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhccc--ccchHHhcccCC
Confidence            79999998  899999999999 9999998774     5788999876 89999999999986533  467999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .++++++++.++++.|.+++.+.+||||
T Consensus        76 ~~v~~~~~~~~a~~~m~~~~~~~lPVVd  103 (144)
T d2yvxa2          76 VYVRTDTDQEEVARLMADYDFTVLPVVD  103 (144)
T ss_dssp             CCEESSCCHHHHHHHHHHSCCSEEEEEC
T ss_pred             ccCCCCChHHHHHHHHHHcCCCEEEEEe
Confidence            9999999999999999999999999999

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.9e-17  Score=147.04  Aligned_cols=106  Identities=10%  Similarity=0.285  Sum_probs=92.2

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC-------------
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-------------  289 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~-------------  289 (508)
                      |.+.+++|+|.+..++++++.+.++. ++++.|.+++++++||++++.++++|+++.+|++......             
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~   88 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE   88 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhh
Confidence            45779999999888999999999999 9999999999999999987768999999999997542110             


Q ss_pred             ------cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          290 ------ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       290 ------~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                            .....++|.++++++++++++.++++.|.+++.|.+||+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd  134 (159)
T d2v8qe2          89 HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID  134 (159)
T ss_dssp             CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC
T ss_pred             hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEE
Confidence                  1234567788899999999999999999999999999998

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=2.4e-16  Score=137.08  Aligned_cols=100  Identities=13%  Similarity=0.220  Sum_probs=89.7

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Ccccccccccccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRI  301 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v  301 (508)
                      .+|+++|+.  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.....    ...+++++|.+++
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcCC--CCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            479999986  899999999999 99999999999999999875 799999999999865432    2367999999999


Q ss_pred             eeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          302 PRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       302 ~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++++++.++++.|.+++.+.+||++
T Consensus        81 ~~v~~~~~~~~~~~~m~~~~~~~l~V~~  108 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEHRIKHILIEE  108 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccCcchHHHHHHHHHHHcCCCEEEEEE
Confidence            9999999999999999999999888765

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.67  E-value=1.4e-16  Score=142.18  Aligned_cols=103  Identities=9%  Similarity=-0.009  Sum_probs=88.3

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC-CCcEEEEeEHhHHhccCCC--------------
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLTVRPE--------------  288 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~-~d~ivGiv~~kDll~~~~~--------------  288 (508)
                      .+++|+|||++  +++++++++++. |+++.|.+++++.+||++++ .+.++|+++..|++.....              
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            46799999997  899999999999 99999999999999999854 3579999999999653210              


Q ss_pred             ---------------CcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          289 ---------------TETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       289 ---------------~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                                     ....+.++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d  141 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS  141 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE
Confidence                           01235667888999999999999999999999999999987

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.66  E-value=1e-16  Score=137.17  Aligned_cols=98  Identities=14%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             ccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC----Ccccccccccccce
Q 010540          227 TAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE----TETPVSAVSIRRIP  302 (508)
Q Consensus       227 ~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~----~~~~V~dim~~~v~  302 (508)
                      +|+|+|++  +++++++++|+. |+++.|.+++++.+||.++  ++++|+++.+|++++...    ...++.++|.++++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~   75 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   75 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEEeeeccccccccccccceeEeeecccccc
Confidence            48899997  889999999999 9999999999999999975  789999999999865322    24679999999999


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++++++.++++.|++++.+.+||+|
T Consensus        76 ~v~~~~~l~~a~~~m~~~~~~~l~V~~  102 (120)
T d1pbja3          76 TISPRATIKEAAEKMVKNVVWRLLVEE  102 (120)
T ss_dssp             EECTTSCHHHHHHHHHHHTCSEEEEEE
T ss_pred             cccchhHHHHHHHHHHHcCCeEEEEEE
Confidence            999999999999999999999999876

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.64  E-value=5.1e-16  Score=133.87  Aligned_cols=92  Identities=12%  Similarity=0.133  Sum_probs=80.0

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC-CCcEEEEeEHhHHhccCCCCcccccccccccceeecCCCCHHHHHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILN  315 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~-~d~ivGiv~~kDll~~~~~~~~~V~dim~~~v~~V~~~~~l~d~L~  315 (508)
                      +++++++++++. ++++.|.+++++++||+++. .++++|+++.+|+......+......+|.++++++++++++.++++
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~   84 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSEHLVTAAVGTDLETAER   84 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBTTTSCCCSCCCCEETTCCHHHHHH
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCceeeeeeccceeecCCCCCHHHHHH
Confidence            677899999999 99999999999999999862 3789999999999987655444445555678889999999999999


Q ss_pred             HHHhCCCeEEEEEe
Q 010540          316 EFQKGSSHMAAVVK  329 (508)
Q Consensus       316 ~m~~~~~~~a~VvD  329 (508)
                      .|.+++.+.+||+|
T Consensus        85 ~m~~~~~~~lpVVd   98 (126)
T d1zfja4          85 ILHEHRIEKLPLVD   98 (126)
T ss_dssp             HHHHTTCSEEEEEC
T ss_pred             HHHhcCCcEEEEEc
Confidence            99999999999999

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=4.6e-16  Score=135.29  Aligned_cols=98  Identities=22%  Similarity=0.223  Sum_probs=88.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCC--------------Ccc
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPE--------------TET  291 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~--------------~~~  291 (508)
                      ++|+++|++  ++.++++++++. ++++.|.+++++++||++   ++++|+++.+|++.....              ...
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             CEeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccC
Confidence            479999998  788899999999 999999999999999996   369999999999865421              135


Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        75 ~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd  112 (135)
T d3ddja2          75 PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD  112 (135)
T ss_dssp             BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC
T ss_pred             CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe
Confidence            79999999999999999999999999999999999999

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.60  E-value=8.6e-16  Score=132.95  Aligned_cols=101  Identities=11%  Similarity=0.105  Sum_probs=86.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCC-CCcEEEEeEHhHHhccCCCC--cccccccccccce
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGN-PKNIIGLLLVKSLLTVRPET--ETPVSAVSIRRIP  302 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~-~d~ivGiv~~kDll~~~~~~--~~~V~dim~~~v~  302 (508)
                      ++|+|+|++  +++++++++++. |+++.|.+++++++||++.+ .++++|+++..|+.+....+  .......|.++.+
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce
Confidence            479999987  889999999999 99999999999999999532 37799999999998753322  2233344578888


Q ss_pred             eecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          303 RVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       303 ~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ++.+++++.++++.|.+++.+.+||+|
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd  104 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVN  104 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEc
Confidence            999999999999999999999999999

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.59  E-value=2.4e-15  Score=133.84  Aligned_cols=101  Identities=10%  Similarity=0.172  Sum_probs=85.1

Q ss_pred             cccccccc-ccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC-----cccccccc---
Q 010540          227 TAEEAMTP-IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ETPVSAVS---  297 (508)
Q Consensus       227 ~V~dIMtp-r~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~-----~~~V~dim---  297 (508)
                      .++++|.+ +++++++++++++. ++++.|.+++++.+||++++ ++++|+++.+|++......     ..++.++|   
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~   79 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR   79 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTS
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeee
Confidence            56778765 56899999999999 99999999999999999875 7999999999998654321     23455554   


Q ss_pred             ---cccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          298 ---IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       298 ---~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                         ..++.++++++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  114 (153)
T d2ooxe2          80 PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD  114 (153)
T ss_dssp             CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC
T ss_pred             ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc
Confidence               35667899999999999999999999999999

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4e-15  Score=130.92  Aligned_cols=104  Identities=14%  Similarity=0.182  Sum_probs=86.1

Q ss_pred             ccccccccccc-ccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCC-----cc------
Q 010540          224 TEKTAEEAMTP-IESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPET-----ET------  291 (508)
Q Consensus       224 ~~~~V~dIMtp-r~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~-----~~------  291 (508)
                      -..++++++.+ ..+++++++++++. |+++.|.+++++.+||++++ ++++|+++.+|++......     ..      
T Consensus         7 ~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~   84 (145)
T d2v8qe1           7 MSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL   84 (145)
T ss_dssp             GGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHG
T ss_pred             hhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhcc
Confidence            34577777654 24789999999999 99999999999999999865 7899999999998765432     12      


Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .+...|..++.++.+++++.++++.|.+++.+.+||+|
T Consensus        85 ~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  122 (145)
T d2v8qe1          85 QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD  122 (145)
T ss_dssp             GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             chhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc
Confidence            23344567888999999999999999999999999999

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.6e-15  Score=134.12  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=84.5

Q ss_pred             cccccccccccce----EEEeCCCCchHHHHHHHHHcCCcEEEEeeC-CCCcEEEEeEHhHHhccCC-------------
Q 010540          226 KTAEEAMTPIEST----FSLDVNSKLDWEAMGKILARGHSRVPVYSG-NPKNIIGLLLVKSLLTVRP-------------  287 (508)
Q Consensus       226 ~~V~dIMtpr~~v----v~v~~~~tl~~eal~~~~~~~~sr~PV~~~-~~d~ivGiv~~kDll~~~~-------------  287 (508)
                      ..|+|||.|+...    +.++++.|+. |+.+.|.+++++++||+++ +.++++|+++.+|++.+..             
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~   81 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   81 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccch
Confidence            5689999986432    4566778898 9999999999999999953 3367999999999975321             


Q ss_pred             ---------------CCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          288 ---------------ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       288 ---------------~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                                     ....+++++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d  138 (169)
T d2j9la1          82 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH  138 (169)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE
Confidence                           012358899999999999999999999999999999999876

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=4.3e-15  Score=130.08  Aligned_cols=103  Identities=13%  Similarity=0.132  Sum_probs=80.0

Q ss_pred             ccccccc-cccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCCCCc-----cc------
Q 010540          225 EKTAEEA-MTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRPETE-----TP------  292 (508)
Q Consensus       225 ~~~V~dI-Mtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~~~~-----~~------  292 (508)
                      .++++++ +.+..+++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++.......     ..      
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~   82 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM   82 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHHH
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhhh
Confidence            4566665 33446899999999999 99999999999999999875 78999999999986532211     11      


Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ....+..++++|++++++.++++.|.+++.+.+||+|
T Consensus        83 ~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd  119 (140)
T d2nyca1          83 RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  119 (140)
T ss_dssp             HCC------CEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe
Confidence            2233456778999999999999999999999999999

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.1e-14  Score=128.02  Aligned_cols=99  Identities=18%  Similarity=0.236  Sum_probs=83.5

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC------------------
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP------------------  287 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~------------------  287 (508)
                      ..|.++|+.  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++....                  
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            457788986  788999999999 99999999999999999865 79999999999975311                  


Q ss_pred             -CCcccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          288 -ETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       288 -~~~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                       -...+++++| ++++++.+++++.++++.|.+++.+.+||+|
T Consensus        80 ~~~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd  121 (145)
T d1o50a3          80 RLIAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD  121 (145)
T ss_dssp             CCSSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             hccccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe
Confidence             0113456654 5667899999999999999999999999999

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.50  E-value=1.4e-15  Score=130.12  Aligned_cols=92  Identities=10%  Similarity=0.243  Sum_probs=42.7

Q ss_pred             ceEEEeCCCCchHHHHHHHHHcCCcEEEEeeC--CCCcEEEEeEHhHHhccCCCC-ccccccccc--ccceeecCCCCHH
Q 010540          237 STFSLDVNSKLDWEAMGKILARGHSRVPVYSG--NPKNIIGLLLVKSLLTVRPET-ETPVSAVSI--RRIPRVPSDMPLY  311 (508)
Q Consensus       237 ~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~--~~d~ivGiv~~kDll~~~~~~-~~~V~dim~--~~v~~V~~~~~l~  311 (508)
                      +++++++++++. ++++.|.+++++++||+++  ..++++|+++.+|+....... +.++.++|+  .++.++++++++.
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   83 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLK   83 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----------------------CCSBTTTSCCEETTCCHH
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECCCCCHH
Confidence            667899999999 9999999999999999975  247899999999986543322 345556554  4678999999999


Q ss_pred             HHHHHHHhCCCeEEEEEe
Q 010540          312 DILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       312 d~L~~m~~~~~~~a~VvD  329 (508)
                      ++++.|++++.+.+||+|
T Consensus        84 ~a~~~m~~~~i~~lpVVd  101 (120)
T d1jr1a4          84 EANEILQRSKKGKLPIVN  101 (120)
T ss_dssp             HHHHHTCSCC---CEEEE
T ss_pred             HHHHHHHHcCccEEEEEc
Confidence            999999999999999999

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.31  E-value=6.9e-07  Score=75.98  Aligned_cols=40  Identities=8%  Similarity=0.126  Sum_probs=38.0

Q ss_pred             cccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          290 ETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       290 ~~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ..||+++|.+++.++++++++.++++.|.+++.+.+||+|
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd   43 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN   43 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEec
Confidence            3579999999999999999999999999999999999999

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=9.8e-08  Score=80.36  Aligned_cols=119  Identities=13%  Similarity=0.083  Sum_probs=93.3

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCC-CCCcccccccccc-c
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGD-CDLTAPLLSKQDE-K  369 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~-~~l~~p~~~i~~~-~  369 (508)
                      +++|+|.+++.++.+++++.++++.|.+++.+.+||+|+.|+++|++  |.+|++......... ...     ...+. .
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Gii--t~~Di~~~~~~~~~~~~~~-----~v~~im~   74 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGML--TDRDIVIKGLAAGLDPNTA-----TAGELAR   74 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEE--EHHHHHHTTGGGTCCTTTS-----BHHHHHT
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhh--hhhhHhhhhhhcCCCcccc-----eEEEEee
Confidence            57899999999999999999999999999999999999999999999  999987644322221 110     11222 3


Q ss_pred             CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHH
Q 010540          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEEL  427 (508)
Q Consensus       370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleei  427 (508)
                      ..+..++++.++.+..+.|..+..+.      ++|.    ++|+++|+||..||++++
T Consensus        75 ~~~~~v~~~~~~~~~~~~m~~~~~~~------lpVv----d~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          75 DSIYYVDANASIQEMLNVMEEHQVRR------VPVI----SEHRLVGIVTEADIARHL  122 (123)
T ss_dssp             TCCCCEETTCCHHHHHHHHHHHTCSE------EEEE----ETTEEEEEEEHHHHHHTC
T ss_pred             ccceeeeecchHHHHHHHHHHcCceE------EEEE----ECCEEEEEEEHHHHHhhC
Confidence            45678999999999999998775443      3332    368999999999999864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.19  E-value=5.8e-07  Score=75.27  Aligned_cols=117  Identities=13%  Similarity=0.179  Sum_probs=96.6

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCC
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE  371 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~  371 (508)
                      .++++|.+++++|++++++.++++.|.+++.+.+||+|+.|+.+|++  +.+|+++.....        +.  ...+...
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii--~~~dl~~~~~~~--------~v--~~~~~~~   69 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVV--NKEDLLDLDLDS--------SV--FNKVSLP   69 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEE--EGGGGTTSCTTS--------BS--GGGCBCT
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEe--ehhhhhhhhccc--------cc--cccccCc
Confidence            37889999999999999999999999999999999999999999999  999998542211        11  1123456


Q ss_pred             ceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          372 SVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       372 ~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ++++++++.+.+..+.|.++......++     +    |+|+++|+||.+|+++.+.+
T Consensus        70 ~~~v~~~~~l~~~~~~~~~~~~~~lpVv-----d----e~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          70 DFFVHEEDNITHALLLFLEHQEPYLPVV-----D----EEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             TCCEETTSBHHHHHHHHHHCCCSEEEEE-----C----TTCBEEEEEEHHHHHHHHHH
T ss_pred             cEEECCCCCHHHHHHHHHhcCceeeeeE-----C----CCCeEEEEEEHHHHHHHHHH
Confidence            7899999999999999998865543333     4    89999999999999999885

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.16  E-value=6.3e-07  Score=75.84  Aligned_cols=59  Identities=15%  Similarity=0.298  Sum_probs=53.7

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      -.+.+|+++|++  ++.++++++++. ++++.|.++++..+||++++ ++++|+|+.+|++..
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~  120 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDV  120 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHH
Confidence            467889999997  778999999999 99999999999999999875 899999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.14  E-value=3.9e-07  Score=76.53  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=79.8

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccccCC
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTE  371 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~  371 (508)
                      .|+++|.++++++++++++.++++.|.+++.+.+||+|+.|++.|++  |.+|++.........          ..+...
T Consensus         2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~i--t~~dl~~~~~~~~~~----------~~~~~~   69 (122)
T d2yzqa2           2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGII--SVKRILVNPDEEQLA----------MLVKRD   69 (122)
T ss_dssp             BHHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEE--ESSCC--------------------CCCBSC
T ss_pred             CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhh--hcchhhhhhcccchh----------hccccc
Confidence            37889999999999999999999999999999999999999999999  999998643221111          122345


Q ss_pred             ceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          372 SVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       372 ~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ..+++++.++.+....|..+..+...++     |    ++|+++|+||..||++.+++
T Consensus        70 ~~~v~~~~~l~~~~~~~~~~~~~~lpVv-----d----~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          70 VPVVKENDTLKKAAKLMLEYDYRRVVVV-----D----SKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEEEEE-----C----TTSCEEEEEEHHHHHHHTTT
T ss_pred             eeecchhhHHHHHHHHHHHcCcEEEEEE-----e----CCCEEEEEEEHHHHHHHHHh
Confidence            6789999999999999998754332222     4    78999999999999999886

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.12  E-value=2.2e-06  Score=73.78  Aligned_cols=38  Identities=11%  Similarity=0.091  Sum_probs=36.3

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      .|+++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d   41 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD   41 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEEC
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeec
Confidence            48899999999999999999999999999999999999

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.09  E-value=4.2e-07  Score=78.05  Aligned_cols=126  Identities=14%  Similarity=0.053  Sum_probs=96.8

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCC---ccccccccc-
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDL---TAPLLSKQD-  367 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l---~~p~~~i~~-  367 (508)
                      +|+|+|.+++.++++++++.++++.|.+++.+.+||+|+.|+.+|++  |.+|++............   ......+.+ 
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Gii--t~~dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIV--SQRDLLAAQESSLQRSAQGDSLAFETPLFEV   80 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--EHHHHHHHHHHHCC---------CCCBHHHH
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccc--cHHHHHHHHHhhhhhhhcccccccccchhHh
Confidence            48899999999999999999999999999999999999999999999  999998665433221100   001111222 


Q ss_pred             ccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          368 EKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       368 ~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      +...+.+++.+.++.+..+.|..+..+.      ++|.    ++|+++|+||..||++.+..
T Consensus        81 m~~~~~~v~~~~~l~~a~~~m~~~~~~~------lpVv----d~~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          81 MHTDVTSVAPQAGLKESAIYMQKHKIGC------LPVV----AKDVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             SCSCEEEBCTTSBHHHHHHHHHHTTCSC------EEEE----ETTEEEEEECHHHHHHHHHH
T ss_pred             hccccccccccchHHHHHHHHHHcCceE------EEEE----ECCEEEEEEEHHHHHHHHHH
Confidence            2456789999999999999998875433      3442    46899999999999998863

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.08  E-value=3.8e-06  Score=70.62  Aligned_cols=39  Identities=21%  Similarity=0.159  Sum_probs=36.9

Q ss_pred             ccccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          291 TPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       291 ~~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ..|+++|.++++++++++++.++++.|.+++.+.+||+|
T Consensus         4 ~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d   42 (127)
T d2ef7a1           4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD   42 (127)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE
T ss_pred             cCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec
Confidence            458999999999999999999999999999999999998

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=3.3e-06  Score=71.46  Aligned_cols=91  Identities=12%  Similarity=0.042  Sum_probs=70.1

Q ss_pred             cccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCcccccccccc
Q 010540          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDE  368 (508)
Q Consensus       291 ~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~  368 (508)
                      .+|+++|+  +++.+|.+++++.++++.|.+++.+.+||+|                                       
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd---------------------------------------   42 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD---------------------------------------   42 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC---------------------------------------
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEee---------------------------------------
Confidence            45888884  7899999999999999999999999999999                                       


Q ss_pred             cCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhCCccCCCCccccc----c--
Q 010540          369 KTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVD----V--  442 (508)
Q Consensus       369 ~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg~eI~dE~d~~~~----~--  442 (508)
                                                               ++|+++|+||..||++.+.+ ......+...+    .  
T Consensus        43 -----------------------------------------~~~~~vGiit~~di~~~~~~-~~~~~~~~~~~~~v~~~m   80 (132)
T d1yava3          43 -----------------------------------------PSYRLHGLIGTNMIMNSIFG-LERIEFEKLDQITVEEVM   80 (132)
T ss_dssp             -----------------------------------------TTCBEEEEEEHHHHHHHHBC-SSSBCGGGTTTSBHHHHS
T ss_pred             -----------------------------------------cccccccEEEcchhHHHhhc-cccccccccccccccccc
Confidence                                                     57899999999999999886 33222221111    0  


Q ss_pred             -ceeEEeccccChHHHhhcCC
Q 010540          443 -HKRIRVAAAAAASSVARAPS  462 (508)
Q Consensus       443 -~~~~~v~~~~~~~~~~~~~~  462 (508)
                       ..-..+.-.+++.++.+.+.
T Consensus        81 ~~~~~~v~~~~~l~~~~~~~~  101 (132)
T d1yava3          81 LTDIPRLHINDPIMKGFGMVI  101 (132)
T ss_dssp             BCSCCEEETTSBHHHHHHHTT
T ss_pred             cccccccccchhHHHHHHHHH
Confidence             01267888888888877763

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.03  E-value=2e-06  Score=74.83  Aligned_cols=60  Identities=27%  Similarity=0.350  Sum_probs=53.8

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      ...+.+|+++|++  +++++++++++. ++++.|.+++++++||++++ ++++|+++.+|++++
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIRDFDLLKV  154 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEEHHHHGGG
T ss_pred             cccCCEeehhccc--CceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEEHHHHHHH
Confidence            3577899999998  788999999998 99999999999999999876 899999999999975

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.02  E-value=1.9e-06  Score=73.14  Aligned_cols=60  Identities=18%  Similarity=0.278  Sum_probs=54.2

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccCC
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVRP  287 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~~  287 (508)
                      .+.+++++|++  +++++++++++. ++++.|.+++.+++||++++ ++++|+|+.+|++++..
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHH
Confidence            45789999998  888999999998 99999999999999999876 89999999999997643

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.97  E-value=9.1e-07  Score=74.81  Aligned_cols=119  Identities=12%  Similarity=0.156  Sum_probs=95.9

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEE--ecCCCccccCCCCCCCccccccccCCCCCCccccccccccc
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVV--KAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEK  369 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~Vv--De~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~  369 (508)
                      +|+++|.++++++++++++.++++.|.+++.+..||+  |+.|+++|++  +..|+.+.+.+......      ......
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~--~~~dl~~~~~~~~~~~~------~~~~~~   73 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVV--SERDILRAVAQRLDLDG------PAMPIA   73 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEE--EHHHHHHHHHTTCCTTS------BSGGGC
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEE--eeecccccccccccccc------cccccc
Confidence            4889999999999999999999999999999999999  5678899999  99999877655443322      223345


Q ss_pred             CCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHH
Q 010540          370 TESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEEL  427 (508)
Q Consensus       370 ~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleei  427 (508)
                      .....+.++.++.+.++.|..+..+...++     +    ++|+++|+||..||++.+
T Consensus        74 ~~~~~v~~~~~~~~a~~~m~~~~i~~lpVv-----d----~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          74 NSPITVLDTDPVHVAAEKMRRHNIRHVVVV-----N----KNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             BCCCEEETTSBHHHHHHHHHHHTCSEEEEE-----C----TTSCEEEEEEHHHHHSCH
T ss_pred             ccceeEeeecchHHHHHHHHHCCeEEEEEE-----c----CCCeEEEEEEHHHHHHHH
Confidence            566788889999999999888755443333     4    899999999999999874

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=97.93  E-value=5e-06  Score=71.67  Aligned_cols=60  Identities=17%  Similarity=0.302  Sum_probs=54.3

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.+++++|++  +++++++++++. ++++.|.++++.++||++++ ++++|+|+.+|++++.
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l  121 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVL  121 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHH
Confidence            456789999997  788899999999 99999999999999999876 8999999999998653

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.91  E-value=2.2e-06  Score=72.17  Aligned_cols=114  Identities=11%  Similarity=0.057  Sum_probs=90.1

Q ss_pred             ccccceeecCCCCHHHHHHHHHhCCCeEEEEEec--CCCccccCCCCCCCccccccccCCCCCCcccccccccccCCcee
Q 010540          297 SIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA--KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSKQDEKTESVV  374 (508)
Q Consensus       297 m~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe--~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i~~~~~~~~~  374 (508)
                      |++++++|++++++.++++.|.+++.+.+||+|+  .|+++|++  |.+|++...........        .-.....+.
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGiv--t~~Di~~~~~~~~~~~~--------~~~~~~~~~   72 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGII--TNRDMRFISDYNAPISE--------HMTSEHLVT   72 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEE--EHHHHHHCSCSSSBTTT--------SCCCSCCCC
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEe--EHHHHHHhhccCCceee--------eeeccceee
Confidence            6677889999999999999999999999999997  67799999  99999865543322211        122345678


Q ss_pred             ecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          375 VDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       375 V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ++++..+.+....|.++..+.-.++     +    ++|+++||||..||++.+-.
T Consensus        73 ~~~~~~l~~a~~~m~~~~~~~lpVV-----d----~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          73 AAVGTDLETAERILHEHRIEKLPLV-----D----NSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             EETTCCHHHHHHHHHHTTCSEEEEE-----C----TTSBEEEEEEHHHHHHHHHC
T ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEE-----c----CCCeEEEEEEHHHHHHHhhC
Confidence            8999999999999988765443233     4    78999999999999998764

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.88  E-value=6.6e-06  Score=68.43  Aligned_cols=58  Identities=22%  Similarity=0.294  Sum_probs=52.3

Q ss_pred             CcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          223 LTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       223 l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      +.+.+++++|++  ++.++++++++. ++++.|.+++..++||.++  ++++|+++.+|++++
T Consensus        61 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~V~~~--~~l~Givt~~Dil~A  118 (120)
T d1pbja3          61 LAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVISATDILRA  118 (120)
T ss_dssp             TTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             ccceeEeeeccc--ccccccchhHHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEEHHHHHhc
Confidence            466789999987  788999999999 9999999999999999874  799999999999865

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.86  E-value=9.9e-06  Score=68.02  Aligned_cols=57  Identities=25%  Similarity=0.377  Sum_probs=51.7

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      .+.+++++|++  ++.++++++++. ++++.|.+++.+++||+++  ++++|+++.+|++++
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          68 KDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLSIGDLVKD  124 (127)
T ss_dssp             GGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHH
T ss_pred             cceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHH
Confidence            45789999997  888999999999 9999999999999999984  799999999999864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.85  E-value=2.6e-06  Score=71.16  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=45.8

Q ss_pred             cccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          224 TEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       224 ~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      .+.++.++|+.+.+++++++++++. ++++.|.+++++++||++++ ++++|+++.+|+++.
T Consensus        59 ~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          59 HDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             -------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             cCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            3567888888888899999999998 99999999999999999876 899999999999863

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.83  E-value=7.1e-06  Score=69.85  Aligned_cols=38  Identities=11%  Similarity=0.197  Sum_probs=36.5

Q ss_pred             cccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          292 PVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       292 ~V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      ||+++|.+++.+|++++++.++++.|.+++.+.+||+|
T Consensus         3 ~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~   40 (141)
T d3ddja1           3 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID   40 (141)
T ss_dssp             BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeeccc
Confidence            68999999999999999999999999999999999999

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=2.9e-06  Score=72.53  Aligned_cols=122  Identities=12%  Similarity=0.125  Sum_probs=92.0

Q ss_pred             cccccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccc---ccccccCCc
Q 010540          296 VSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLL---SKQDEKTES  372 (508)
Q Consensus       296 im~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~---~i~~~~~~~  372 (508)
                      +|..++.++.+++++.+|++.|.+++.+.+||+|+.|+++|++  |.+|++..+..............   .........
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~i--t~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVY--EAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGV   91 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE--EHHHHHHHHHTC----CCSBHHHHHHHCC------
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEccee--hhhHHHHHHhhccccccccchhhhhhhhhhccccc
Confidence            4568899999999999999999999999999999999999999  99999987765444322111110   112334567


Q ss_pred             eeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHh
Q 010540          373 VVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELL  428 (508)
Q Consensus       373 ~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeiv  428 (508)
                      +++++++++.+..+.|..+..+...+++         |+|+++|+||..||++.++
T Consensus        92 ~~v~~~~~l~~~~~~~~~~~~~~l~VVd---------~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          92 YTCTKNDKLSTIMDNIRKARVHRFFVVD---------DVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             CEECTTSBHHHHHHHHHHHTCSEEEEEC---------TTSBEEEEEEHHHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHhcCeeEEEEEe---------CCCeEEEEEEHHHHHHHHh
Confidence            8999999999999999988665544444         8999999999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=1.7e-05  Score=67.80  Aligned_cols=126  Identities=16%  Similarity=0.174  Sum_probs=97.2

Q ss_pred             cccccc---cccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccc----c
Q 010540          292 PVSAVS---IRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLL----S  364 (508)
Q Consensus       292 ~V~dim---~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~----~  364 (508)
                      ++++++   .+++++|.+++++.+|++.|.+++.+.+||+|+.|+++|++  |.+|++..+........ ..+..    .
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvi--t~~di~~~l~~~~~~~~-~~~v~~~~~~   86 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY--SKFDVINLAAEKTYNNL-DVSVTKALQH   86 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEE--EGGGTGGGGGSSCCCCC-SSBHHHHGGG
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEE--Ecchhhhhhhcccccch-hhhhhhccch
Confidence            345543   36789999999999999999999999999999999999999  99999987765433221 11111    1


Q ss_pred             cccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          365 KQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       365 i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                      ........+.++++.++.+....|..+..+..-+++         ++|+++|+||..||++.++-
T Consensus        87 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---------~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          87 RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD---------EHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             CCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC---------TTSBEEEEEEHHHHHHHHHS
T ss_pred             hhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc---------cCCEEEEEEEHHHHHHHHHh
Confidence            123345667899999999999999887655433333         78999999999999999984

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.67  E-value=2.7e-05  Score=66.43  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=34.7

Q ss_pred             ccccccccceeecCCCCHHHHHHHHHhCCCeEEEEEe
Q 010540          293 VSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVK  329 (508)
Q Consensus       293 V~dim~~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvD  329 (508)
                      +.++|.+++++|++++++.++++.|.+++.+.+||+|
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd   42 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA   42 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEE
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEec
Confidence            5677889999999999999999999999999999999

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.64  E-value=2.7e-05  Score=67.19  Aligned_cols=95  Identities=13%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             cccHHHHHHHHHHhhhhhcc---CCCC-ChhHHHHHHHhhcCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCc
Q 010540          186 LFRRAQLKALVTIHSQEAGK---GGEL-THDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHS  261 (508)
Q Consensus       186 ~~s~eEL~~lv~~~~~e~~~---~g~l-~~~E~~~i~~vl~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~s  261 (508)
                      .++..++..++.........   .... .......-..........++++|.+  .++++++++++. ++++.|.+++++
T Consensus        59 ~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~-~~~~~m~~~~v~  135 (160)
T d2d4za3          59 SIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLD  135 (160)
T ss_dssp             EEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHH-HHHHHHHHHTCS
T ss_pred             cchHHHHHHHHhhccccccccchhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHH-HHHHHHHHcCCe
Confidence            45777877766532211000   0111 1222333444556677788999987  778899999999 999999999999


Q ss_pred             EEEEeeCCCCcEEEEeEHhHHhcc
Q 010540          262 RVPVYSGNPKNIIGLLLVKSLLTV  285 (508)
Q Consensus       262 r~PV~~~~~d~ivGiv~~kDll~~  285 (508)
                      ++||+++  ++++|+|+.+|++++
T Consensus       136 ~l~V~d~--g~lvGiIt~~Di~k~  157 (160)
T d2d4za3         136 RAYVTSM--GKLVGVVALAEIQAA  157 (160)
T ss_dssp             EEEEEET--TEEEEEEEHHHHHHH
T ss_pred             EEEEEEC--CEEEEEEEHHHHHHH
Confidence            9999874  799999999999865

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.7e-05  Score=68.46  Aligned_cols=60  Identities=12%  Similarity=0.149  Sum_probs=53.3

Q ss_pred             cCcccccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          222 DLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       222 ~l~~~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      .....+++++|+|  +++++++++++. ++++.|.+++.+++||.++  ++++|+|+.+|++++.
T Consensus        96 ~~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          96 TPPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHI  155 (169)
T ss_dssp             CCCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHH
T ss_pred             cccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            3456789999998  788999999999 9999999999999999874  7899999999999764

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.60  E-value=8.9e-06  Score=70.54  Aligned_cols=126  Identities=11%  Similarity=0.114  Sum_probs=96.5

Q ss_pred             ccccccc---ccceeecCCCCHHHHHHHHHhCCCeEEEEEecCCCccccCCCCCCCccccccccCCCCCCccccccc---
Q 010540          292 PVSAVSI---RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKAKGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLLSK---  365 (508)
Q Consensus       292 ~V~dim~---~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~~i---  365 (508)
                      |+++++.   +++++|.+++++.++++.|.+++.+.+||+|+.|+++|++  |.+|++..+........ ..+..+.   
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~i--t~~Dl~~~~~~~~~~~~-~~~v~~~~~~   78 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVY--ESVDVMHLIQDGDYSNL-DLSVGEALLK   78 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEE--EHHHHHHHHGGGCGGGG-GSBHHHHHHT
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEE--Eeeeeeehhcccccccc-ccchhhheee
Confidence            4566654   5789999999999999999999999999999999999999  99999876653322111 1111111   


Q ss_pred             -ccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccccCCCceEEeechHHHHHHHhC
Q 010540          366 -QDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASEDIEDGEVIGIITLEDVFEELLQ  429 (508)
Q Consensus       366 -~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~~E~G~lvGIVTleDIleeivg  429 (508)
                       .......++++++.++.+..+.|..+..+...++     |    ++|+++|+||..||++.+++
T Consensus        79 ~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-----d----~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          79 RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV-----D----ENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             SCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEE-----C----TTCBEEEEEEHHHHHHHHHS
T ss_pred             eecccCCCeEECCCCcHHHHHHhhhhceeeEEEEE-----c----CCCEEEEEEEHHHHHHHHHc
Confidence             1223445689999999999999998865554343     4    89999999999999999987

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=4.7e-05  Score=65.93  Aligned_cols=58  Identities=17%  Similarity=0.214  Sum_probs=51.0

Q ss_pred             cccccccccccceEEEeCCCCchHHHHHHHHHcCCcEEEEeeCCCCcEEEEeEHhHHhccC
Q 010540          226 KTAEEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNIIGLLLVKSLLTVR  286 (508)
Q Consensus       226 ~~V~dIMtpr~~vv~v~~~~tl~~eal~~~~~~~~sr~PV~~~~~d~ivGiv~~kDll~~~  286 (508)
                      ..+.++|.+  +++++++++++. ++++.|.+++.+++||++++.++++|+|+.+|++++.
T Consensus        96 ~~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          96 EVYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             ceeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            346778887  788999999998 9999999999999999986658999999999999753

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.30  E-value=1.6e-05  Score=70.38  Aligned_cols=137  Identities=9%  Similarity=0.002  Sum_probs=98.3

Q ss_pred             cccccccc--ccceeecCCCCHHHHHHHHHhCCCeEEEEEec-CCCccccCCCCCCCccccccccCCCCCCccccc----
Q 010540          291 TPVSAVSI--RRIPRVPSDMPLYDILNEFQKGSSHMAAVVKA-KGKSKTLPPMTDGKKPKLNEAKGGDCDLTAPLL----  363 (508)
Q Consensus       291 ~~V~dim~--~~v~~V~~~~~l~d~L~~m~~~~~~~a~VvDe-~g~i~Giv~~t~kDll~~i~~~~~~~~l~~p~~----  363 (508)
                      ..+.|+|.  .+++++++++++.+|++.|.+++.+.+||+|+ .+.++|++  |.+|++..+..............    
T Consensus        20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGii--s~~Di~~~l~~~~~~~~~~~~~~~~~~   97 (179)
T d2ooxe1          20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLL--TMADFVNVIKYYYQSSSFPEAIAEIDK   97 (179)
T ss_dssp             SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEE--CHHHHHHHHHHHHHHCSCGGGGGGGGG
T ss_pred             CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEE--eechHHHHHHhccccccchhhhhhhhc
Confidence            45788885  67899999999999999999999999999994 68899999  99999865432111000000000    


Q ss_pred             -----------ccccccCCceeecCCCCCccchhhhhcccCCCCcccccccccccc-cCCCceEEeechHHHHHHHhCCc
Q 010540          364 -----------SKQDEKTESVVVDVDRPLSSGSMNRLSSSQRSDSTTNGLIYASED-IEDGEVIGIITLEDVFEELLQEE  431 (508)
Q Consensus       364 -----------~i~~~~~~~~~V~~~~~l~~~~~~~~~~~~~~~~~i~~l~v~~~~-~E~G~lvGIVTleDIleeivg~e  431 (508)
                                 ....+..+.+.++++.++.+....|..+..|...++     |.++ .+.+.++||||..||++.|.. .
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVv-----d~~g~~~~~~vvgiiT~~dIlk~l~~-~  171 (179)
T d2ooxe1          98 FRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI-----DVDGETGSEMIVSVLTQYRILKFISM-N  171 (179)
T ss_dssp             SBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEE-----EECTTTCCEEEEEEEEHHHHHHHHHT-T
T ss_pred             cchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEE-----ecCCCcCCCcEEEEEeHHHHHHHHHH-h
Confidence                       111235667889999999999999998865553333     3211 122469999999999999986 7


Q ss_pred             cCCC
Q 010540          432 IVDE  435 (508)
Q Consensus       432 I~dE  435 (508)
                      +.++
T Consensus       172 ~~~~  175 (179)
T d2ooxe1         172 CKET  175 (179)
T ss_dssp             CGGG
T ss_pred             hhHh
Confidence            7654

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

Probab=96.14  E-value=0.00067  Score=51.40  Aligned_cols=42  Identities=12%  Similarity=0.039  Sum_probs=33.5

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~  486 (508)
                      +|+|+|+++++|+|+.++++.++++.+.-|+|||  ..-|+.++
T Consensus         2 s~~vdG~~~i~dl~~~l~~~~~~~~~~~~Ti~G~vl~~lg~iP~   45 (76)
T d2o3ga1           2 SLTVEGALEYVELAPQLNLPQQEEDADFHTVAGLIMEELQTIPD   45 (76)
T ss_dssp             CSEEETTCBHHHHTTTTTCCCCCTTCSCSBHHHHHHHHHTSCCC
T ss_pred             eEEEEcCCCHHHHHHHHCcCCCccccccccHHHHHHHHhCcCCC
Confidence            6899999999999999999988776666677999  33444443

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.61  E-value=0.0013  Score=50.77  Aligned_cols=41  Identities=10%  Similarity=0.024  Sum_probs=32.8

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPP  485 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~  485 (508)
                      +|+|+|.++++|+|+.++++.++++.+..|+|||  ...|+.+
T Consensus        12 ~~~v~G~~~l~dl~~~l~~~l~~e~~~~~TlgG~i~~~lg~iP   54 (85)
T d2p13a1          12 TWLMDGWISIRKASNLLEHDLVDEAERYSTLGGYLLWQFGYIP   54 (85)
T ss_dssp             CEEEETTSBHHHHHHHHTSCCCCTTCCCCBHHHHHHHHHSSCC
T ss_pred             eEEEEecCCHHHHHHHHCCCCCCccccceEHHHHHHHHhCcCC
Confidence            6999999999999999999887666666677999  3334443

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

Probab=95.55  E-value=0.0022  Score=49.17  Aligned_cols=42  Identities=19%  Similarity=0.137  Sum_probs=32.9

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~  486 (508)
                      +|+|+|.++++|+|+.++++.++++.+.-|+|||  ..-|+.++
T Consensus         7 ~~~v~g~~~l~d~~~~~~~~~~~~~~~~~TlgG~i~~~lg~iP~   50 (82)
T d2p4pa1           7 SWLIDGATPLEDVMRALNIHTFPRDENYETIGGFMMYMLRKIPK   50 (82)
T ss_dssp             EEEEETTSBHHHHHHHTTCCCSCCSCSSCBHHHHHHHHHCSCCC
T ss_pred             EEEEEeeCCHHHHHHHhCCCCCCcccCccCHHHHHHHHhCcCCC
Confidence            7999999999999999999876556556667999  44455444

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

Probab=95.51  E-value=0.0017  Score=50.02  Aligned_cols=41  Identities=10%  Similarity=0.029  Sum_probs=32.9

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPKK  487 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~  487 (508)
                      +|+|+|.++++|+|+.++++.++++++|+  |||  ..-|+-|..
T Consensus         7 ~~~v~G~~~l~dl~~~l~~~l~~~~~dTl--gG~v~~~lg~iP~~   49 (84)
T d2rk5a1           7 TYIVLGTMTLNDFNEYFETDLESDNVDTI--AGFYLTGVGTIPSQ   49 (84)
T ss_dssp             EEEEETTSBHHHHHHHHTCCCCCTTCCBH--HHHHHHHHCSCCCS
T ss_pred             EEEEEeeeEHHHHHHHhCCCcccccchhH--HHHHHHHhCcCCCC
Confidence            69999999999999999999877766765  999  444554443

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

Probab=95.36  E-value=0.0019  Score=49.03  Aligned_cols=41  Identities=7%  Similarity=0.011  Sum_probs=32.7

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPKK  487 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~  487 (508)
                      +|.|+|.++++|+|+.++++.+.++++|+  |||  ..-|+.++.
T Consensus         7 ~~~v~G~~~l~dl~~~l~~~l~~~~~~Ti--~G~v~~~lg~iP~~   49 (78)
T d2o1ra1           7 SMIIDGSANLRDLNKMFNWELDTEDARTF--NGLILEHLEEIPDE   49 (78)
T ss_dssp             CEEEETTCBHHHHHHHHCCCCCCSSCSBH--HHHHHHHCSSCCCT
T ss_pred             EEEEEeeCCHHHHHHHHCCCCCCccchHH--HHHHHHHhCcCCCC
Confidence            69999999999999999998877666655  999  445555543

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.15  E-value=0.0026  Score=48.97  Aligned_cols=41  Identities=10%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPKK  487 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~  487 (508)
                      +|+|+|.++++|+|+.++++.++++++|  +|||  ..-|+.|..
T Consensus        10 ~~~v~G~~~l~dl~~~l~~~l~~~~~~T--igG~i~~~lg~iP~~   52 (84)
T d2r2za1          10 EYLVQGRMLIDEFNEVFETDLHMSDVDT--MAGYLITALGTIPDE   52 (84)
T ss_dssp             EEEEETTSBHHHHHHHHTCCCCCTTCCB--HHHHHHHHHSSCCCT
T ss_pred             EEEEEeeCCHHHHHHHHCcCCCCccchh--HHHHHHHHhCcCCCC
Confidence            6999999999999999999987666665  5999  334555443

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=95.13  E-value=0.0028  Score=48.75  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             eeEEeccccChHHHhhcCCCCCCccccCccccCCc
Q 010540          444 KRIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ  478 (508)
Q Consensus       444 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  478 (508)
                      ..|+|+|.++++|+|+.++++.+.++++|  +|||
T Consensus        11 ~~~~v~g~~~l~dl~~~~~~~l~~~~~~T--igG~   43 (84)
T d2plia1          11 ERWRIHAATEIEDINTFFGTEYSSEEADT--IGGL   43 (84)
T ss_dssp             TEEEEETTCBHHHHHHHHCCCCCCSSCCB--HHHH
T ss_pred             CEEEEEecCCHHHHHHHhCCCCCccccHH--HHHH
Confidence            37999999999999999999887766555  5999

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.78  E-value=0.0037  Score=49.56  Aligned_cols=41  Identities=15%  Similarity=0.086  Sum_probs=33.0

Q ss_pred             eEEeccccChHHHhhcCCCCCCccccCccccCCc--ccCCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQKGAANQGGQ--SKQGLPPKK  487 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~  487 (508)
                      +|.|+|.++++|+|+.+|++.++++++|+  |||  ..-|+.++.
T Consensus        10 ~~~v~G~~~l~dl~~~l~~~l~~~~~~Tl--~G~~~~~lg~iP~~   52 (98)
T d2p3ha1          10 KWLIDGDTPLDEVERAIGYELPEGDYETI--SGLLFDHANALLKT   52 (98)
T ss_dssp             EEEEETTCBHHHHHHHHTSCCCCSSCCBH--HHHHHHHHCSCCCT
T ss_pred             EEEEEeccCHHHHHHHHCCCCCCCCccCH--HHHHHHHHCcCCCC
Confidence            69999999999999999999887766665  999  444555443

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.96  E-value=0.0068  Score=46.45  Aligned_cols=42  Identities=12%  Similarity=0.022  Sum_probs=32.4

Q ss_pred             eEEeccccChHHHhhcCCCCCCccc--cCccccCCc--ccCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQ--KGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~--~~~~~~~~  486 (508)
                      +|+|+|.++++|+|+.++++.++++  .+.-|+|||  ...|+.++
T Consensus         8 ~~~v~G~~~l~dl~~~l~~~~~~~~e~~~~~Tl~G~i~~~lg~iP~   53 (84)
T d2plsa1           8 SWLLDGLIAVPELKDTLGLRAVPEEEKGVYHTLSGMIMWLLGRLPQ   53 (84)
T ss_dssp             CEEEETTCBHHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHHTSCCC
T ss_pred             eEEEEccCCHHHHHHHHCCCCCcccccccccCHHHHHHHHhCccCC
Confidence            6999999999999999999876543  345677999  44455444

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

Probab=93.73  E-value=0.0094  Score=45.96  Aligned_cols=42  Identities=10%  Similarity=0.012  Sum_probs=30.8

Q ss_pred             eEEeccccChHHHhhcCCCCCCc---cccCccccCCc--ccCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLI---GQKGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~--~~~~~~~~  486 (508)
                      +|+|+|.++++|+|+.++++.+.   ++.+.-|+|||  ...|+.++
T Consensus        10 ~~~v~G~~~l~dl~~~~~~~l~~~~~~~~~~~TlgG~il~~lg~iP~   56 (87)
T d3deda1          10 SWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPS   56 (87)
T ss_dssp             CEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCC
T ss_pred             eEEEEeeCCHHHHHHHhCCCCCCCccccccccCHHHHHHHHhCcCCC
Confidence            69999999999999999998751   23344456999  44444443

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=93.56  E-value=0.0084  Score=46.27  Aligned_cols=42  Identities=12%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             eEEeccccChHHHhhcCCCCCCccc-cCccccCCc--ccCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLIGQ-KGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~--~~~~~~~~  486 (508)
                      +|+|+|.++++|+|+.++++.+.++ .+.-|+|||  ...|+.+.
T Consensus        12 ~~~v~G~~~l~dl~~~l~~~l~~~e~~~~~Tl~G~i~~~lg~iP~   56 (87)
T d2oaia1          12 SFLIDGTLPIEELREVLGAELPDGEENNYHTLAGMCISYFGRIPH   56 (87)
T ss_dssp             CEEEETTCBHHHHHHHHTC-------CCCSBHHHHHHHHHSSCCC
T ss_pred             EEEEEecCCHHHHHHHHCCCCCcccccccccHHHHHHHHhCcCCC
Confidence            6999999999999999999887654 345567999  34444443

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

Probab=92.18  E-value=0.013  Score=45.19  Aligned_cols=42  Identities=10%  Similarity=-0.050  Sum_probs=30.0

Q ss_pred             eEEeccccChHHHhhcCCCCCCc---cccCccccCCc--ccCCCCCC
Q 010540          445 RIRVAAAAAASSVARAPSSRRLI---GQKGAANQGGQ--SKQGLPPK  486 (508)
Q Consensus       445 ~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~--~~~~~~~~  486 (508)
                      +|+|+|+++++|+|+.++++...   .+.+.-|+|||  ..-|+.++
T Consensus        10 ~~~v~G~~~l~dl~~~l~~~l~~~~~~~~~~~Ti~G~i~~~lg~iP~   56 (87)
T d2nqwa1          10 SYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPH   56 (87)
T ss_dssp             CEEEETTCBHHHHHHHHTCCTTTTHHHHTTCSBHHHHHHHHHCSCCC
T ss_pred             EEEEEEeCCHHHHHHHhCCCcccccCcccceeeHHHHHHHHhCcccc
Confidence            69999999999999999987642   22344455999  34444433