Citrus Sinensis ID: 010554
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 507 | 2.2.26 [Sep-21-2011] | |||||||
| Q00081 | 470 | Glucose-1-phosphate adeny | N/A | no | 0.885 | 0.955 | 0.754 | 0.0 | |
| P55231 | 521 | Glucose-1-phosphate adeny | yes | no | 0.986 | 0.959 | 0.685 | 0.0 | |
| Q9SIK1 | 523 | Probable glucose-1-phosph | no | no | 0.942 | 0.913 | 0.699 | 0.0 | |
| P55233 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.978 | 0.950 | 0.626 | 0.0 | |
| P55230 | 518 | Glucose-1-phosphate adeny | no | no | 0.838 | 0.820 | 0.699 | 0.0 | |
| P55242 | 519 | Glucose-1-phosphate adeny | N/A | no | 0.980 | 0.957 | 0.614 | 0.0 | |
| P12299 | 522 | Glucose-1-phosphate adeny | N/A | no | 0.869 | 0.844 | 0.643 | 1e-177 | |
| P30524 | 523 | Glucose-1-phosphate adeny | N/A | no | 0.869 | 0.843 | 0.640 | 1e-176 | |
| P55229 | 522 | Glucose-1-phosphate adeny | no | no | 0.834 | 0.810 | 0.643 | 1e-175 | |
| P12300 | 500 | Glucose-1-phosphate adeny | N/A | no | 0.820 | 0.832 | 0.652 | 1e-171 |
| >sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/469 (75%), Positives = 404/469 (86%), Gaps = 20/469 (4%)
Query: 59 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
K+KPGVAY+V+T+++ + + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATP
Sbjct: 2 KIKPGVAYSVITTENDTQTVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATP 61
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVL 178
AVPV GCYRLIDIPMSNCINS INKIFVLTQ+NSA LNRHIARTYFGNG +FGDGFVEVL
Sbjct: 62 AVPVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAPLNRHIARTYFGNGVSFGDGFVEVL 121
Query: 179 AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238
AATQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+
Sbjct: 122 AATQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQNHI 181
Query: 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298
DR+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G +LKAMQVDT+L+G SPQ+
Sbjct: 182 DRNADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQD 241
Query: 299 ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI 358
A+K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDI
Sbjct: 242 AKKSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDI 301
Query: 359 GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC 418
GTIKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+C
Sbjct: 302 GTIKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDC 361
Query: 419 TVEHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 458
+VEHSIV DYYQTESEIASLLAEGKVPIG+G NTKIR CII
Sbjct: 362 SVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCII 421
Query: 459 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
DKN KIGK+V I+NKD VQEADRPE GFYIRSGI II+EKATI DG VI
Sbjct: 422 DKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7 |
| >sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/528 (68%), Positives = 414/528 (78%), Gaps = 28/528 (5%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEK 59
MDSCC T V A K K +N GE+I+GSV K L ++K R+ K
Sbjct: 1 MDSCC-NFSLGTKTVLA-KDSFKNVENKFLGEKIKGSV-----LKPFSSDLSSKKFRNRK 53
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
++PGVAYA+ TSK+ E + P ERRR DPKNVAAIILGGG G KLFPLT RAATPA
Sbjct: 54 LRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPA 113
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLA
Sbjct: 114 VPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLA 173
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD
Sbjct: 174 ATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVD 233
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
ADIT+SCA V ESRAS+YGLV ID GR+ F+EKP+G +LK+MQ DT++ G S QEA
Sbjct: 234 SKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEA 293
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWEDIG
Sbjct: 294 AKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIG 353
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFYEAN+AL +E P F FYD TPFYTSPRFLPPTK + CRI +++ISHGCFL EC+
Sbjct: 354 TIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECS 413
Query: 420 VEHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 459
++ SI+ D YQTESEIASLLAEG VPIG+GR+TKIR CIID
Sbjct: 414 IQRSIIGERSRLDYGVELQDTLMLGADSYQTESEIASLLAEGNVPIGIGRDTKIRKCIID 473
Query: 460 KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
KN KIGK+VVI+NKDDV+EADRPE GFYIRSGIT+++EKATI+DG VI
Sbjct: 474 KNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/503 (69%), Positives = 410/503 (81%), Gaps = 25/503 (4%)
Query: 26 DNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPR 84
+N +GE+ +N+G K+ L ++K R++K K GV YAV TS +P + MT+
Sbjct: 25 ENRFYGEK----NNNNGLCKRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSM 80
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKI
Sbjct: 81 FERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKI 140
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
FVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F W
Sbjct: 141 FVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLW 200
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
VFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V ESRAS++GLVKI
Sbjct: 201 VFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D GR+ F+EKP+G +LK+MQ DT++LG S QEA PY+ASMGVY FK + L LL
Sbjct: 261 DRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTR 320
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
+YP+SNDFGSE+IPAAI +HDVQ YIFRDYWEDIGTIK+FYEAN+AL +E P F FYDP+
Sbjct: 321 QYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPE 380
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV------------------- 425
TPFYTSPRFLPPTK + CR+ D+IISHGCFLREC+V+ SI+
Sbjct: 381 TPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSIIGERSRLDYGVELQDTLMLG 440
Query: 426 -DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 484
DYYQTESEIASLLAEGKVPIG+G++TKIR CIIDKN KIGK+V+I+NK DVQEADRPE
Sbjct: 441 ADYYQTESEIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEE 500
Query: 485 GFYIRSGITIIMEKATIEDGMVI 507
GFYIRSGIT+I+EKATI+DG VI
Sbjct: 501 GFYIRSGITVIVEKATIQDGTVI 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/533 (62%), Positives = 406/533 (76%), Gaps = 37/533 (6%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSL-KAEKRDEK 59
MD+ + N H+ +++G GERI S+ K L+ + E +
Sbjct: 1 MDASAAAINVNAHL-------TEVGKKRFLGERISQSLKG----KDLRALFSRTESKGRN 49
Query: 60 V-KPGVAYAVMTS---KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRA 115
V KPGVA++V+TS + E + P E + DPKNVAAI+LGGGAGT+LFPLT R
Sbjct: 50 VNKPGVAFSVLTSDFNQSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRR 109
Query: 116 ATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGF 174
A PAVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+ARTY FG+G NFGDGF
Sbjct: 110 AKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGF 169
Query: 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFI 234
VEV AATQTPGESGK WFQGTADAVRQF W FED+K++++E++ IL GDHLYRMDYM F
Sbjct: 170 VEVFAATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFW 229
Query: 235 QSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGF 294
Q H+D +ADIT+SC + +SRASDYGL+KID+ GRI FAEKP G++L AMQVDT++LG
Sbjct: 230 QKHIDTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGL 289
Query: 295 SPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDY 354
S EA PY+ASMGVYVF+ DVL +LL +YP+SNDFGSEIIP+A+ E +VQAY+F DY
Sbjct: 290 SDLEAMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQAYLFNDY 349
Query: 355 WEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCF 414
WEDIGTIKSF+++N+ALT++ P F FYDPKTPFYTS RFLPPTK+D C+I D+I+SHGCF
Sbjct: 350 WEDIGTIKSFFDSNLALTQQPPKFEFYDPKTPFYTSARFLPPTKVDRCKIVDSIVSHGCF 409
Query: 415 LRECTVEHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIR 454
L+E +++HSIV DYYQTESEIASLLAEGKVP+GVG+NTKI+
Sbjct: 410 LQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIK 469
Query: 455 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
NCIIDKN KIGKDVVI N D V+EADRP GFYIRSGITII++ ATI+DG+VI
Sbjct: 470 NCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Beta vulgaris (taxid: 161934) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/446 (69%), Positives = 371/446 (83%), Gaps = 21/446 (4%)
Query: 83 PRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGIN 142
P L + DPKNVA+IILGGGAGT+LFPLT + A PAVP+ GCYRLIDIPMSNCINSGI
Sbjct: 73 PLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIR 132
Query: 143 KIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201
KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEVLAATQT G++GK WFQGTADAVRQ
Sbjct: 133 KIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADAVRQ 192
Query: 202 FTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGL 261
F WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H++ +ADIT+SC + ESRASD+GL
Sbjct: 193 FIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLPMDESRASDFGL 252
Query: 262 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321
+KID G+I QF+EKP G +LKAMQVDTS+LG P+EA + PY+ASMGVYVF+K+VL KL
Sbjct: 253 LKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPKEAAESPYIASMGVYVFRKEVLLKL 312
Query: 322 LRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY 381
LR YPTSNDFGSEIIP A+ EH+VQA++F DYWEDIGTI SF++AN+ALT++ P F FY
Sbjct: 313 LRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWEDIGTIGSFFDANLALTEQPPKFQFY 372
Query: 382 DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV---------------- 425
D KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLREC+V+HSIV
Sbjct: 373 DQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTM 432
Query: 426 ----DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 481
D+YQTE+EIASLLAEGKVP+GVG+NTKI+NCIIDKN KIGK+VVI N D V+E DR
Sbjct: 433 MMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDR 492
Query: 482 PELGFYIRSGITIIMEKATIEDGMVI 507
PE GF+IRSGIT++++ ATI DG+ I
Sbjct: 493 PEEGFHIRSGITVVLKNATIRDGLHI 518
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/529 (61%), Positives = 387/529 (73%), Gaps = 32/529 (6%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGS-VSNDGCTKQLKKSLKAEKRDEK 59
MD+ C ++ +V ++A WGE+I G + N G + KS ++R
Sbjct: 1 MDALCASMKGTAQLVAICNQ-----ESAFWGEKISGRRLINKGFGVRSCKSFTTQQRGRN 55
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERR-RVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
V P AV+T E++ E + DPK VA++ILGGG GT+LFPLT R A P
Sbjct: 56 VTP----AVLTRDINKEMLPFEESMFEEQPTADPKAVASVILGGGVGTRLFPLTSRRAKP 111
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVL 178
AVP+ GCYRLID+PMSNCINSGI KIF+LTQFNS SLNRH+A FGNG FGDGFVEVL
Sbjct: 112 AVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLATYNFGNGVGFGDGFVEVL 171
Query: 179 AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV 238
A TQTPG+ K WFQ ADAVR+F WVFE+ KN+N+E++ IL GDHLYRM+YMDF+Q H+
Sbjct: 172 AGTQTPGDGRKMWFQA-ADAVREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQKHI 230
Query: 239 DRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298
D +ADIT+SC + + RASD+GL+KID G I QFAEKP G LKAMQVDTS+LG S QE
Sbjct: 231 DTNADITVSCVPMDDGRASDFGLMKIDETGAIIQFAEKPKGPALKAMQVDTSILGLSEQE 290
Query: 299 ARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDI 358
A PY+ASMGVYVFK DVL LL+ YP+ NDFGSEIIP+A+ +H+VQAY+F DYWEDI
Sbjct: 291 ASNFPYIASMGVYVFKTDVLLNLLKSAYPSCNDFGSEIIPSAVKDHNVQAYLFNDYWEDI 350
Query: 359 GTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLREC 418
GT+KSF++AN+ALTK+ P F F DPKTPFYTS RFLPPTK+D RI DAIISHGCFLREC
Sbjct: 351 GTVKSFFDANLALTKQPPKFDFNDPKTPFYTSARFLPPTKVDKSRIVDAIISHGCFLREC 410
Query: 419 TVEHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCII 458
++HSIV DYYQTE EIASLLAEGKVPIGVG NTKI+NCII
Sbjct: 411 NIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQNCII 470
Query: 459 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
DKN KIGKDVVI+NK+ V+EADR GFYIRSGIT+IM+ ATI+DG VI
Sbjct: 471 DKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 620 bits (1600), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/465 (64%), Positives = 357/465 (76%), Gaps = 24/465 (5%)
Query: 65 AYAVMTSK-HPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA 123
A V+TS P + + L R DP VAA+ILGGG GT+LFPLT ATPAVP+
Sbjct: 60 AQCVLTSDASPADTLVLRT-SFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIG 118
Query: 124 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183
GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ
Sbjct: 119 GCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQM 178
Query: 184 PGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDA 242
PGE+ WF+GTADAVR+F WV ED KN++IE++ IL GD LYRMDYM+ +Q HVD +A
Sbjct: 179 PGEAA-GWFRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQKHVDDNA 237
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302
DIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+ + K
Sbjct: 238 DITLSCAPVGESRASEYGLVKFDSSGRVVQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKY 297
Query: 303 PYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 362
PY+ASMGVYVFK+DVL LL+ RY +DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+
Sbjct: 298 PYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIR 357
Query: 363 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 422
SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFLREC +EH
Sbjct: 358 SFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEH 417
Query: 423 SIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 462
SI+ D Y+TE EI+ L++EGKVPIGVG NTKI NCIID N
Sbjct: 418 SIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNA 477
Query: 463 KIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
+IG+DVVI NK+ VQEADRPE G+YIRSGI +I + ATI+DG V+
Sbjct: 478 RIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 | Back alignment and function description |
|---|
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/465 (64%), Positives = 357/465 (76%), Gaps = 24/465 (5%)
Query: 65 AYAVMTS-KHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA 123
A V+TS P + + L R DP VAA+ILGGG GT+LFPLT ATPAVP+
Sbjct: 61 AQCVLTSDASPADTLVLRT-SFRRNYADPNEVAAVILGGGTGTQLFPLTSTRATPAVPIG 119
Query: 124 GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQT 183
GCYRLIDIPMSNC NSGINKIFV+TQFNSASLNRHI RTY G G NF DG VEVLAATQ
Sbjct: 120 GCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTYLGGGINFTDGSVEVLAATQM 179
Query: 184 PGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDA 242
PGE+ WF+GTADAVR+F WV ED K+++IE++ IL GD LYRMDYM+ +Q HVD +A
Sbjct: 180 PGEAA-GWFRGTADAVRKFIWVLEDYYKHKSIEHILILSGDQLYRMDYMELVQKHVDDNA 238
Query: 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302
DIT+SCA VGESRAS+YGLVK D+ GR+ QF+EKP G +L+AM+VDTS L F+ + K
Sbjct: 239 DITLSCAPVGESRASEYGLVKFDSSGRVIQFSEKPKGDDLEAMKVDTSFLNFAIDDPAKY 298
Query: 303 PYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIK 362
PY+ASMGVYVFK+DVL LL+ RY +DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+
Sbjct: 299 PYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIR 358
Query: 363 SFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEH 422
SF++ANMAL ++ P F FYDPKTPF+TSPR+LPPTK D CRIK+AIISHGCFLREC +EH
Sbjct: 359 SFFDANMALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIISHGCFLRECKIEH 418
Query: 423 SIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNV 462
SI+ D Y+TE EI+ L++EGKVPIGVG NTKI NCIID N
Sbjct: 419 SIIGVRSRLNSGSELKNAMMMGADSYETEDEISRLMSEGKVPIGVGENTKISNCIIDMNA 478
Query: 463 KIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
+IG+DVVI NK+ VQEADRPE G+YIRSGI +I + ATI+DG V+
Sbjct: 479 RIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 523
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 616 bits (1588), Expect = e-175, Method: Compositional matrix adjust.
Identities = 285/443 (64%), Positives = 349/443 (78%), Gaps = 20/443 (4%)
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
LE + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+
Sbjct: 80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKV 139
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
++LTQ+NSASLNRH+AR Y NG FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W
Sbjct: 140 YILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHW 199
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
+FEDA++++IE+V IL GDHLYRMDYMDFIQ H ADI+ISC + + RASD+GL+KI
Sbjct: 200 LFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D+ GR+ F+EKP G +LKAM VDT++LG S +EA K PY+ASMGVYVFKK++L LLRW
Sbjct: 260 DDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRW 319
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
R+PT+NDFGSEIIP + E V AY+F DYWEDIGTI+SF+EAN+ALT+ AF FYD
Sbjct: 320 RFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAA 379
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV------------------- 425
P YTS R LPP+KIDN ++ D+IISHG FL C +EHSIV
Sbjct: 380 KPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLG 439
Query: 426 -DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 484
DYY+TE+E+A+LLAEG VPIG+G NTKI+ CIIDKN ++GK+V+I N + +QEADR
Sbjct: 440 ADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSD 499
Query: 485 GFYIRSGITIIMEKATIEDGMVI 507
GFYIRSGIT+I++ + I+DG+VI
Sbjct: 500 GFYIRSGITVILKNSVIKDGVVI 522
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
| >sp|P12300|GLGL3_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic (Fragment) OS=Triticum aestivum GN=AGA.7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 600 bits (1548), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/435 (65%), Positives = 341/435 (78%), Gaps = 19/435 (4%)
Query: 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF 150
DP VAA+ILGGG GT+LFPLT ATPAVP+ GCYRLIDIPMSNC NSGINKIFV+TQF
Sbjct: 67 DPNEVAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQF 126
Query: 151 NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDA- 209
NSASLNRHI RTY G G NF DG VEVLAATQ PGE+ WF+GTADA R+ WV ED
Sbjct: 127 NSASLNRHIHRTYLGGGINFTDGSVEVLAATQMPGEAA-GWFRGTADAWRKIIWVLEDYY 185
Query: 210 KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 269
KN++IE++ IL GD LYRMDYM+ +Q HVD +ADIT+SCA VGESRAS+YGLVK D+ GR
Sbjct: 186 KNKSIEHILILSGDQLYRMDYMELVQKHVDDNADITLSCAPVGESRASEYGLVKFDSSGR 245
Query: 270 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329
+ QF+E+P G +L+AM+VDTS L F+ + K PY+ASMGVYVFK+DVL LL+ RY
Sbjct: 246 VVQFSEQPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAEL 305
Query: 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT 389
+DFGSEI+P A+ +H+VQAY+F DYWEDIGTI+SF++AN AL ++ P F FYDPKTPF+T
Sbjct: 306 HDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANRALCEQPPKFEFYDPKTPFFT 365
Query: 390 SPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSI-----------------VDYYQTES 432
SPR+LPPTK D CRIK+AII HGCFLREC +EH+ D Y+TE
Sbjct: 366 SPRYLPPTKSDKCRIKEAIILHGCFLRECKIEHTAFSRLNSGSELKNAMMMGADSYETED 425
Query: 433 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI 492
E++ L++EGKVPIGVG NTKI NCIID N +IG+DVVI NK+ VQEADRPE G+YIRSGI
Sbjct: 426 EMSRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGI 485
Query: 493 TIIMEKATIEDGMVI 507
+I + ATI+DG V+
Sbjct: 486 VVIQKNATIKDGTVV 500
|
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 2 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 507 | ||||||
| 194595409 | 527 | ADP-glucose pyrophosphorylase large subu | 1.0 | 0.962 | 0.956 | 0.0 | |
| 5917791 | 531 | ADP-glucose pyrophosphorylase large subu | 0.992 | 0.947 | 0.923 | 0.0 | |
| 255543725 | 531 | glucose-1-phosphate adenylyltransferase, | 1.0 | 0.954 | 0.766 | 0.0 | |
| 224103389 | 527 | predicted protein [Populus trichocarpa] | 1.0 | 0.962 | 0.755 | 0.0 | |
| 224080375 | 526 | predicted protein [Populus trichocarpa] | 0.998 | 0.961 | 0.764 | 0.0 | |
| 225428422 | 527 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.962 | 0.740 | 0.0 | |
| 297744412 | 517 | unnamed protein product [Vitis vinifera] | 0.980 | 0.961 | 0.726 | 0.0 | |
| 356545193 | 528 | PREDICTED: glucose-1-phosphate adenylylt | 1.0 | 0.960 | 0.736 | 0.0 | |
| 83630945 | 524 | ADPglucose pyrophosphorylase large subun | 0.994 | 0.961 | 0.719 | 0.0 | |
| 1947084 | 524 | ADP-glucose pyrophosphorylase large subu | 0.994 | 0.961 | 0.715 | 0.0 |
| >gi|194595409|gb|ACF77017.1| ADP-glucose pyrophosphorylase large subunit [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/527 (95%), Positives = 505/527 (95%), Gaps = 20/527 (3%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV
Sbjct: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV
Sbjct: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA
Sbjct: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR
Sbjct: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR
Sbjct: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
KCPYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT
Sbjct: 301 KCPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHGCFLRECTV
Sbjct: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHGCFLRECTV 420
Query: 421 EHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 460
EHSIV DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK
Sbjct: 421 EHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 480
Query: 461 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
NVKIGKDVVIVNKD VQEADRPELGFYIRSGITIIMEKATIEDGMVI
Sbjct: 481 NVKIGKDVVIVNKDGVQEADRPELGFYIRSGITIIMEKATIEDGMVI 527
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5917791|gb|AAD56042.1|AF184598_1 ADP-glucose pyrophosphorylase large subunit [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/535 (92%), Positives = 498/535 (93%), Gaps = 32/535 (5%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSV NDGCTKQLKKSLKAEKRDEKV
Sbjct: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVRNDGCTKQLKKSLKAEKRDEKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAYA+MTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV
Sbjct: 61 KPGVAYAIMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV+GCYRLIDIP INSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA
Sbjct: 121 PVSGCYRLIDIP----INSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 176
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--------YRMDYMD 232
TQTPGESGKNWFQGTADAV +FTWVFEDAKNRNIENVAILCGDHL YRMDYMD
Sbjct: 177 TQTPGESGKNWFQGTADAVTRFTWVFEDAKNRNIENVAILCGDHLSILCGDHLYRMDYMD 236
Query: 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL 292
FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL
Sbjct: 237 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLL 296
Query: 293 GFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 352
GFSPQEARK PYVASMGVYVFKKDVL KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR
Sbjct: 297 GFSPQEARKSPYVASMGVYVFKKDVLLKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFR 356
Query: 353 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHG 412
DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCR+KDAIISHG
Sbjct: 357 DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRMKDAIISHG 416
Query: 413 CFLRECTVEHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTK 452
CFLRECTVEHSIV DYYQTESEIASLLAEGKVPIGVGRNTK
Sbjct: 417 CFLRECTVEHSIVGERSRIDYGVELKDTVMLGADYYQTESEIASLLAEGKVPIGVGRNTK 476
Query: 453 IRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
IRNCIIDKNVKIGKDVVIVNKD VQEADRPELGFYIRSGITIIMEKATIEDGMVI
Sbjct: 477 IRNCIIDKNVKIGKDVVIVNKDGVQEADRPELGFYIRSGITIIMEKATIEDGMVI 531
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543725|ref|XP_002512925.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223547936|gb|EEF49428.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/531 (76%), Positives = 448/531 (84%), Gaps = 24/531 (4%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSC + L NT++VKASK G GD GE IRGS N Q+K+ LKA+ KV
Sbjct: 1 MDSCLMALNTNTNLVKASKGGINTGDKEFLGEMIRGSSKNSVWFNQMKRRLKADWNVNKV 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPP----RLERRRVDPKNVAAIILGGGAGTKLFPLTLRAA 116
KPGVAYAV+TS +P E++TL+PP R ERR+VDPKNVA+IILGGGAGT+LFPLT RAA
Sbjct: 61 KPGVAYAVLTSNNPKEIVTLSPPPPPPRFERRKVDPKNVASIILGGGAGTQLFPLTRRAA 120
Query: 117 TPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176
TPAVPV GCY+LIDIPMSNCINSGINKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVE
Sbjct: 121 TPAVPVGGCYKLIDIPMSNCINSGINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVE 180
Query: 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS 236
VLAATQTPGE+G NWFQGTADAVRQFTWVFEDAKNRN+EN+ IL GDHLYRMDYMDF+Q
Sbjct: 181 VLAATQTPGEAGMNWFQGTADAVRQFTWVFEDAKNRNVENILILSGDHLYRMDYMDFVQH 240
Query: 237 HVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSP 296
HVD +ADITISCAAVGESRASDYGLVKID+ GRI FAEKP GA LK+++ DT+ LG SP
Sbjct: 241 HVDSNADITISCAAVGESRASDYGLVKIDSRGRIVHFAEKPGGAELKSLKADTTQLGLSP 300
Query: 297 QEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWE 356
Q+A K PY+ASMGVYVF+ ++L KLLRWR+PTSNDFGSEIIPAA+MEH++Q+Y FRDYWE
Sbjct: 301 QDALKSPYIASMGVYVFRTEILLKLLRWRFPTSNDFGSEIIPAAVMEHNIQSYNFRDYWE 360
Query: 357 DIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLR 416
DIGTIKSFYEAN+ALT+E P F FYDPKTPFYTSPRFLPPTKID CRI DAIISHGCFLR
Sbjct: 361 DIGTIKSFYEANLALTEEPPTFEFYDPKTPFYTSPRFLPPTKIDKCRIVDAIISHGCFLR 420
Query: 417 ECTVEHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNC 456
ECTV HS+V DYYQTE+EIASLLAEGKVPIGVGRNTKI+NC
Sbjct: 421 ECTVRHSVVGERSRLDYGVELKDTVMLGADYYQTETEIASLLAEGKVPIGVGRNTKIKNC 480
Query: 457 IIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
IIDKN KIGKDVVIVNKD VQEADRPE GFYIRSGITIIMEKATIEDG VI
Sbjct: 481 IIDKNAKIGKDVVIVNKDGVQEADRPEEGFYIRSGITIIMEKATIEDGTVI 531
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103389|ref|XP_002313036.1| predicted protein [Populus trichocarpa] gi|222849444|gb|EEE86991.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2155), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/527 (75%), Positives = 438/527 (83%), Gaps = 20/527 (3%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCC L+ANTHV KASK G GD WGERIRGS +N QL KSLK +K K
Sbjct: 1 MDSCCATLKANTHVAKASKGGFNNGDKEFWGERIRGSFNNSVWVNQLAKSLKVDKSVNKF 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA++V+TS + E +TL PPR ERR+ DPKNVA+IILGGGAGT+LFPLT RAATPAV
Sbjct: 61 KPGVAFSVLTSSNGRETVTLQPPRFERRKADPKNVASIILGGGAGTQLFPLTRRAATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
P+ GCYRLIDIPMSNCINSGINKIFVLTQFNS SLNRH+ARTYFGNG FGDGFVEVLAA
Sbjct: 121 PLGGCYRLIDIPMSNCINSGINKIFVLTQFNSTSLNRHLARTYFGNGIIFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WFQGTADAVRQFTWVFEDAKNRNIEN+ +L GDHLYRMDYMDF+Q H+D
Sbjct: 181 TQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRNIENILVLSGDHLYRMDYMDFVQHHIDS 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+AD TISCAAVGESRASDYGLVKID G++ QFAEKP G+ L+ M+VDT+ LG SPQ+A
Sbjct: 241 NADFTISCAAVGESRASDYGLVKIDGRGQVFQFAEKPKGSELREMRVDTTRLGLSPQDAM 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L KLLRWRYPT+NDFGSEIIPAA+MEH+VQAYIF+DYWEDIGT
Sbjct: 301 KSPYIASMGVYVFKTDILLKLLRWRYPTANDFGSEIIPAAVMEHNVQAYIFKDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEAN+AL +E P F FYDPKTPFYTSPRF PPTK D CRI +AIISHGCFLRECTV
Sbjct: 361 IKSFYEANLALAEEPPKFEFYDPKTPFYTSPRFSPPTKFDKCRIVNAIISHGCFLRECTV 420
Query: 421 EHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 460
+HS+V D YQTE EIASLLAEG+VPIGVGRNTKIRNCIIDK
Sbjct: 421 QHSVVGERSRLDYGVELKDTVMLGADCYQTEVEIASLLAEGEVPIGVGRNTKIRNCIIDK 480
Query: 461 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
N KIGKDV+I+NKD VQEADR E GFYIRSGITII EKATIEDG VI
Sbjct: 481 NAKIGKDVIIMNKDGVQEADREEEGFYIRSGITIISEKATIEDGTVI 527
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080375|ref|XP_002306116.1| predicted protein [Populus trichocarpa] gi|222849080|gb|EEE86627.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/527 (76%), Positives = 437/527 (82%), Gaps = 21/527 (3%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSC V LRANT V KASK G GD WGERIRGS +N Q KSLK +K K
Sbjct: 1 MDSCYVALRANTPVAKASKGGFINGDTEFWGERIRGSFNNI-WVNQFAKSLKVDKSVNKF 59
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
PGVA+AV+TS + E +TL PPR RRR DPKNVA+IILGGGAGT+LFPLT RAATPAV
Sbjct: 60 TPGVAFAVLTSNNGKETVTLQPPRFGRRRADPKNVASIILGGGAGTQLFPLTRRAATPAV 119
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRH+A TYFGNG NFGDGFVEVLAA
Sbjct: 120 PVGGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHLAHTYFGNGINFGDGFVEVLAA 179
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WFQGTADAVRQFTWVFEDAKNR+IEN+ IL GDHLYRMDYMDF+Q HVD
Sbjct: 180 TQTPGEAGMKWFQGTADAVRQFTWVFEDAKNRSIENILILSGDHLYRMDYMDFVQHHVDS 239
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADITISC AVGESRASDYGLVKID+ G+I QF EKP G+ L+ MQVDT+ LG SPQ+A
Sbjct: 240 NADITISCVAVGESRASDYGLVKIDSKGQIFQFTEKPKGSELREMQVDTTHLGLSPQDAL 299
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K Y+ASMGVYVFK D+L KLLRWR+PTSNDFGSEIIPAA+MEH+VQAYIF+DYWEDIGT
Sbjct: 300 KSSYIASMGVYVFKTDILLKLLRWRFPTSNDFGSEIIPAAVMEHNVQAYIFKDYWEDIGT 359
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFYEAN+AL +E P F FYDPKTPFYTSP FLPPTKID CRI DAIISHGCFLRECTV
Sbjct: 360 IKSFYEANLALAEEPPKFEFYDPKTPFYTSPGFLPPTKIDKCRIVDAIISHGCFLRECTV 419
Query: 421 EHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 460
+HS+V D+YQTE+EIASLLAEGKVPIGVGRNTKIRNCIIDK
Sbjct: 420 QHSVVGERSRLDYGVELKDTVMLGADHYQTEAEIASLLAEGKVPIGVGRNTKIRNCIIDK 479
Query: 461 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
N KIGKDV+I NKD VQEADR E GFYIRSGITII+EKATIEDG VI
Sbjct: 480 NAKIGKDVIITNKDGVQEADREEKGFYIRSGITIILEKATIEDGTVI 526
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428422|ref|XP_002283855.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/527 (74%), Positives = 440/527 (83%), Gaps = 20/527 (3%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCV +A H+ KAS+ G GDN WGERIRGS++N G QL K LK EKR K+
Sbjct: 1 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQLAKGLKTEKRPRKI 60
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA +V+TS + E +T+ P ERRR DPKNVA+IILGGGAGT+LFPLT+R ATPAV
Sbjct: 61 KPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAV 120
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIF+LTQFNSASLNRHIARTYFGNG NFGDGFVEVLAA
Sbjct: 121 PVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAA 180
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WF+GTADAVR+F WVFEDAKN+NIEN+ IL GDHLYRMDYMD +Q+H+DR
Sbjct: 181 TQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDR 240
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
ADIT+SC VGESRASDYGL+K+DN GRI QFAEKP GA+LKAM+VDT+ LG SPQEA
Sbjct: 241 KADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAM 300
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L LLRWRYPTSNDFGSEIIP A+MEH+V+A++FRDYWEDIGT
Sbjct: 301 KSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGT 360
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IK+FYEANM LT+E P F FY+PKTP +TSPRFLPPTKI+ C++ DAIISHGCFLREC+V
Sbjct: 361 IKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSV 420
Query: 421 EHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 460
+HSIV D+YQTESEIASLLAEG VPIG+GRNTKIRNCIIDK
Sbjct: 421 KHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDK 480
Query: 461 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
N KIGKD VIVNKD VQEADRP+ GFYIRSGITII+EKATI+DG VI
Sbjct: 481 NAKIGKDAVIVNKDGVQEADRPDDGFYIRSGITIILEKATIKDGTVI 527
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744412|emb|CBI37674.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/527 (72%), Positives = 434/527 (82%), Gaps = 30/527 (5%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MDSCCV +A H+ KAS+ G GDN WGERIRGS++N G Q +K +
Sbjct: 1 MDSCCVTFKAKAHLAKASRGGLSNGDNEFWGERIRGSLNNSGWVSQPRK----------I 50
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVA +V+TS + E +T+ P ERRR DPKNVA+IILGGGAGT+LFPLT+R ATPAV
Sbjct: 51 KPGVACSVITSNNGKETVTIQAPIFERRRADPKNVASIILGGGAGTQLFPLTIRQATPAV 110
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIF+LTQFNSASLNRHIARTYFGNG NFGDGFVEVLAA
Sbjct: 111 PVGGCYRLIDIPMSNCINSNINKIFILTQFNSASLNRHIARTYFGNGVNFGDGFVEVLAA 170
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+G WF+GTADAVR+F WVFEDAKN+NIEN+ IL GDHLYRMDYMD +Q+H+DR
Sbjct: 171 TQTPGEAGMKWFEGTADAVRKFIWVFEDAKNKNIENILILSGDHLYRMDYMDLVQNHIDR 230
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
ADIT+SC VGESRASDYGL+K+DN GRI QFAEKP GA+LKAM+VDT+ LG SPQEA
Sbjct: 231 KADITVSCVPVGESRASDYGLLKMDNRGRIIQFAEKPKGADLKAMKVDTTRLGLSPQEAM 290
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK D+L LLRWRYPTSNDFGSEIIP A+MEH+V+A++FRDYWEDIGT
Sbjct: 291 KSPYIASMGVYVFKTDILLNLLRWRYPTSNDFGSEIIPLAVMEHNVEAFLFRDYWEDIGT 350
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IK+FYEANM LT+E P F FY+PKTP +TSPRFLPPTKI+ C++ DAIISHGCFLREC+V
Sbjct: 351 IKTFYEANMGLTEEFPKFEFYNPKTPIFTSPRFLPPTKIEQCQVVDAIISHGCFLRECSV 410
Query: 421 EHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 460
+HSIV D+YQTESEIASLLAEG VPIG+GRNTKIRNCIIDK
Sbjct: 411 KHSIVGERSRLDYGVELKDTLMMGADFYQTESEIASLLAEGNVPIGIGRNTKIRNCIIDK 470
Query: 461 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
N KIGKD VIVNKD VQEADRP+ GFYIRSGITII+EKATI+DG VI
Sbjct: 471 NAKIGKDAVIVNKDGVQEADRPDDGFYIRSGITIILEKATIKDGTVI 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356545193|ref|XP_003541029.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/528 (73%), Positives = 435/528 (82%), Gaps = 21/528 (3%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVS-NDGCTKQLKKSLKAEKRDEK 59
M S CV L+ANTH+VK+ K + D+ GERI+G ++ + QL SL+ ++R +K
Sbjct: 1 MVSACVTLKANTHLVKSRKDNTFRQDSGFLGERIKGGLNYSPWIINQLASSLRTQERVKK 60
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
KPGV AV+TS + E + P RR+ DPKNV +IILGGG G +LFPLT RAATPA
Sbjct: 61 AKPGVVSAVLTSSNTKESVAFQMPSFLRRKADPKNVVSIILGGGPGIQLFPLTKRAATPA 120
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYRLIDIPMSNCINSG+NKIFVLTQFNSASLNRHI+RTYFGNG NFGDG VEVLA
Sbjct: 121 VPVGGCYRLIDIPMSNCINSGLNKIFVLTQFNSASLNRHISRTYFGNGINFGDGCVEVLA 180
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQT GE+GKNWFQGTADAVRQFTWVFEDAK+ NIENV IL GDHLYRMDYMD +QSHVD
Sbjct: 181 ATQTQGETGKNWFQGTADAVRQFTWVFEDAKHTNIENVLILAGDHLYRMDYMDLVQSHVD 240
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
R+ADIT+SCAAVGESRASDYGLVK D GRI QF+EKP GA+LKAMQVDTS+LG P EA
Sbjct: 241 RNADITVSCAAVGESRASDYGLVKADGRGRIIQFSEKPKGADLKAMQVDTSVLGLPPHEA 300
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
++ PY+ASMGVYVFK DVL KLL+WRYPTSNDFGSEIIPAA+ E++VQAY F DYWEDIG
Sbjct: 301 KRSPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVRENNVQAYFFNDYWEDIG 360
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFY+AN+ALT+E+P F FYDPKTP YTSPRFLPPTKID CRI DAIISHGCFLRECT
Sbjct: 361 TIKSFYDANLALTEENPMFKFYDPKTPIYTSPRFLPPTKIDKCRIVDAIISHGCFLRECT 420
Query: 420 VEHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIID 459
V+HSIV DYYQTESEIASLLAEGKVPIG+GRNTKIRNCIID
Sbjct: 421 VQHSIVGERSRLDYGVELQDTVMMGADYYQTESEIASLLAEGKVPIGIGRNTKIRNCIID 480
Query: 460 KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
KN KIGKDV+I+NKD VQEADRPE GFYIRSGIT+I+EKATIEDG VI
Sbjct: 481 KNAKIGKDVIIMNKDGVQEADRPEDGFYIRSGITVILEKATIEDGTVI 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83630945|gb|ABC26921.1| ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] gi|83630947|gb|ABC26922.1| ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/527 (71%), Positives = 439/527 (83%), Gaps = 23/527 (4%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MD+CC +++ H+ + S G G+ ++GE+IRGS++N+ QL KSLK EK K+
Sbjct: 1 MDTCCAAMKSTVHLGRVSTGGFNNGEKEIFGEKIRGSLNNNLRINQLSKSLKLEK---KI 57
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
KPGVAY+V+T+++ E + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATPAV
Sbjct: 58 KPGVAYSVITTENDTETVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAV 117
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIFVLTQ+NSA+LNRHIARTYFGNG +FGDGFVEVLAA
Sbjct: 118 PVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAALNRHIARTYFGNGVSFGDGFVEVLAA 177
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+DR
Sbjct: 178 TQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENILVLSGDHLYRMDYMELVQNHIDR 237
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G LKAMQVDT+L+G SPQ+A+
Sbjct: 238 NADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFELKAMQVDTTLVGLSPQDAK 297
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDIGT
Sbjct: 298 KSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGT 357
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+CTV
Sbjct: 358 IKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCTV 417
Query: 421 EHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 460
EHSIV DYYQTESEIASLLAEGKVPIG+G NTKIR CIIDK
Sbjct: 418 EHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDK 477
Query: 461 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
N KIGK+V I+NKD VQEADRPE GFYIRSGI II EKATI DG VI
Sbjct: 478 NAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIISEKATIRDGTVI 524
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1947084|gb|AAC49941.1| ADP-glucose pyrophosphorylase large subunit 1 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/527 (71%), Positives = 437/527 (82%), Gaps = 23/527 (4%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDEKV 60
MD+CC +++ H+ + S G G+ ++GE+IRGS++N+ QL KSLK EK K+
Sbjct: 1 MDTCCAAMKSTVHLGRVSTGGFNNGEKEIFGEKIRGSLNNNLRINQLSKSLKLEK---KI 57
Query: 61 KPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAV 120
K G AY+V+T ++ E + + PRLERRR +PK+VAA+ILGGG GTKLFPLT R ATPAV
Sbjct: 58 KFGEAYSVITIENDTETVFVDMPRLERRRANPKDVAAVILGGGEGTKLFPLTSRTATPAV 117
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAA 180
PV GCYRLIDIPMSNCINS INKIFVLTQ+NSA+LNRHIARTYFGNG +FGDGFVEVLAA
Sbjct: 118 PVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAALNRHIARTYFGNGVSFGDGFVEVLAA 177
Query: 181 TQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240
TQTPGE+GK WFQGTADAVR+F WVFEDAKN+NIEN+ +L GDHLYRMDYM+ +Q+H+DR
Sbjct: 178 TQTPGEAGKKWFQGTADAVRKFIWVFEDAKNKNIENILVLSGDHLYRMDYMELVQNHIDR 237
Query: 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300
+ADIT+SCA +SRASD+GLVKID+ GR+ QFAEKP G +LKAMQVDT+L+G SPQ+A+
Sbjct: 238 NADITLSCAPAEDSRASDFGLVKIDSRGRVVQFAEKPKGFDLKAMQVDTTLVGLSPQDAK 297
Query: 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGT 360
K PY+ASMGVYVFK DVL KLL+W YPTSNDFGSEIIPAAI +++VQAYIF+DYWEDIGT
Sbjct: 298 KSPYIASMGVYVFKTDVLLKLLKWSYPTSNDFGSEIIPAAIDDYNVQAYIFKDYWEDIGT 357
Query: 361 IKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTV 420
IKSFY A++ALT+E P F FYDPKTPFYTSPRFLPPTKIDNC+IKDAIISHGCFLR+CTV
Sbjct: 358 IKSFYNASLALTQEFPEFQFYDPKTPFYTSPRFLPPTKIDNCKIKDAIISHGCFLRDCTV 417
Query: 421 EHSIV--------------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDK 460
EHSIV DYYQTESEIASLLAEGKVPIG+G NTKIR CIIDK
Sbjct: 418 EHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDK 477
Query: 461 NVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
N KIGK+V I+NKD VQEADRPE GFYIRSGI II EKATI DG VI
Sbjct: 478 NAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIIAEKATIRDGTVI 524
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 507 | ||||||
| TAIR|locus:2136358 | 521 | APL3 [Arabidopsis thaliana (ta | 0.824 | 0.802 | 0.692 | 2.1e-193 | |
| TAIR|locus:2049364 | 523 | APL4 [Arabidopsis thaliana (ta | 0.781 | 0.757 | 0.708 | 2.7e-191 | |
| TAIR|locus:2199241 | 518 | APL2 "ADPGLC-PPase large subun | 0.814 | 0.797 | 0.623 | 5.2e-175 | |
| TAIR|locus:2182132 | 522 | APL1 "ADP glucose pyrophosphor | 0.672 | 0.653 | 0.683 | 1.3e-158 | |
| TAIR|locus:2156263 | 520 | ADG1 "ADP glucose pyrophosphor | 0.668 | 0.651 | 0.545 | 4e-123 | |
| UNIPROTKB|P15280 | 514 | AGPS "Glucose-1-phosphate aden | 0.660 | 0.651 | 0.548 | 4e-121 | |
| TAIR|locus:2032003 | 476 | APS2 "AT1G05610" [Arabidopsis | 0.781 | 0.831 | 0.397 | 3.6e-73 | |
| TIGR_CMR|SO_1498 | 420 | SO_1498 "glucose-1-phosphate a | 0.735 | 0.888 | 0.377 | 5.3e-56 | |
| TIGR_CMR|BA_5122 | 376 | BA_5122 "glucose-1-phosphate a | 0.360 | 0.486 | 0.369 | 2.9e-48 | |
| UNIPROTKB|Q9KLP4 | 407 | glgC2 "Glucose-1-phosphate ade | 0.751 | 0.936 | 0.314 | 7.1e-45 |
| TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1549 (550.3 bits), Expect = 2.1e-193, Sum P(2) = 2.1e-193
Identities = 295/426 (69%), Positives = 338/426 (79%)
Query: 1 MDSCCVGLRANTHVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEK 59
MDSCC T V A K K +N GE+I+GSV K L ++K R+ K
Sbjct: 1 MDSCC-NFSLGTKTVLA-KDSFKNVENKFLGEKIKGSV-----LKPFSSDLSSKKFRNRK 53
Query: 60 VKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPA 119
++PGVAYA+ TSK+ E + P ERRR DPKNVAAIILGGG G KLFPLT RAATPA
Sbjct: 54 LRPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPA 113
Query: 120 VPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLA 179
VPV GCYR+IDIPMSNCINS INKIFVLTQFNSASLNRH+ARTYFGNG NFGDGFVEVLA
Sbjct: 114 VPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGNGINFGDGFVEVLA 173
Query: 180 ATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239
ATQTPGE+GK WFQGTADAVR+F WVFEDAKNRNIEN+ IL GDHLYRM+YMDF+Q HVD
Sbjct: 174 ATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHHVD 233
Query: 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299
ADIT+SCA V ESRAS+YGLV ID GR+ F+EKP+G +LK+MQ DT++ G S QEA
Sbjct: 234 SKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQEA 293
Query: 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIG 359
K PY+ASMGVY FK + L KLL WRYP+SNDFGSEIIPAAI +H+VQ YI+RDYWEDIG
Sbjct: 294 AKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQGYIYRDYWEDIG 353
Query: 360 TIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECT 419
TIKSFYEAN+AL +E P F FYD TPFYTSPRFLPPTK + CRI +++ISHGCFL EC+
Sbjct: 354 TIKSFYEANIALVEEHPKFEFYDQNTPFYTSPRFLPPTKTEKCRIVNSVISHGCFLGECS 413
Query: 420 VEHSIV 425
++ SI+
Sbjct: 414 IQRSII 419
|
|
| TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1520 (540.1 bits), Expect = 2.7e-191, Sum P(2) = 2.7e-191
Identities = 284/401 (70%), Positives = 333/401 (83%)
Query: 26 DNALWGERIRGSVSNDGCTKQLKKSLKAEK-RDEKVKPGVAYAVMTSKHPNEVMTLAPPR 84
+N +GE+ +N+G K+ L ++K R++K K GV YAV TS +P + MT+
Sbjct: 25 ENRFYGEKN----NNNGLCKRFGSDLGSKKFRNQKFKHGVVYAVATSDNPKKAMTVKTSM 80
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
ERR+VDP+NVAAIILGGG G KLFPLT+RAATPAVPV GCYRLIDIPMSNCINS INKI
Sbjct: 81 FERRKVDPQNVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKI 140
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
FVLTQFNSASLNRH+ARTYFGNG NFG GFVEVLAATQTPGE+GK WFQGTADAVR+F W
Sbjct: 141 FVLTQFNSASLNRHLARTYFGNGINFGGGFVEVLAATQTPGEAGKKWFQGTADAVRKFLW 200
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
VFEDAKNRNIEN+ IL GDHLYRM+YMDF+QSHVD +ADIT+SCA V ESRAS++GLVKI
Sbjct: 201 VFEDAKNRNIENILILSGDHLYRMNYMDFVQSHVDSNADITLSCAPVSESRASNFGLVKI 260
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D GR+ F+EKP+G +LK+MQ DT++LG S QEA PY+ASMGVY FK + L LL
Sbjct: 261 DRGGRVIHFSEKPTGVDLKSMQTDTTMLGLSHQEATDSPYIASMGVYCFKTEALLNLLTR 320
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
+YP+SNDFGSE+IPAAI +HDVQ YIFRDYWEDIGTIK+FYEAN+AL +E P F FYDP+
Sbjct: 321 QYPSSNDFGSEVIPAAIRDHDVQGYIFRDYWEDIGTIKTFYEANLALVEERPKFEFYDPE 380
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV 425
TPFYTSPRFLPPTK + CR+ D+IISHGCFLREC+V+ SI+
Sbjct: 381 TPFYTSPRFLPPTKAEKCRMVDSIISHGCFLRECSVQRSII 421
|
|
| TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1399 (497.5 bits), Expect = 5.2e-175, Sum P(2) = 5.2e-175
Identities = 267/428 (62%), Positives = 332/428 (77%)
Query: 1 MDSCCVGLRAN--THVVKASKYGSKIGDNALWGERIRGSVSNDGCTKQLKKSLKAEKRDE 58
M+SC ++ N T + ++ +A WG ++ N T +L+ + + +
Sbjct: 1 MESCFPAMKLNQCTFGLNNEIVSERV--SAFWGTQV--VKPNHLRTTKLRSAPQ-----K 51
Query: 59 KVKPGVAYAVMTSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATP 118
K++ + +V+T P P L + DPKNVA+IILGGGAGT+LFPLT + A P
Sbjct: 52 KIQTNLIRSVLT---PFVDQESHEPLLRTQNADPKNVASIILGGGAGTRLFPLTSKRAKP 108
Query: 119 AVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEV 177
AVP+ GCYRLIDIPMSNCINSGI KIF+LTQFNS SLNRH++RTY FGNG NFGDGFVEV
Sbjct: 109 AVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEV 168
Query: 178 LAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSH 237
LAATQT G++GK WFQGTADAVRQF WVFEDAK +N+E+V IL GDHLYRMDYM+F+Q H
Sbjct: 169 LAATQTSGDAGKKWFQGTADAVRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQKH 228
Query: 238 VDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQ 297
++ +ADIT+SC + ESRASD+GL+KID G+I QF+EKP G +LKAMQVDTS+LG P+
Sbjct: 229 IESNADITVSCLPMDESRASDFGLLKIDQSGKIIQFSEKPKGDDLKAMQVDTSILGLPPK 288
Query: 298 EARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWED 357
EA + PY+ASMGVYVF+K+VL KLLR YPTSNDFGSEIIP A+ EH+VQA++F DYWED
Sbjct: 289 EAAESPYIASMGVYVFRKEVLLKLLRSSYPTSNDFGSEIIPLAVGEHNVQAFLFNDYWED 348
Query: 358 IGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE 417
IGTI SF++AN+ALT++ P F FYD KTPF+TSPRFLPPTK+D CRI D+I+SHGCFLRE
Sbjct: 349 IGTIGSFFDANLALTEQPPKFQFYDQKTPFFTSPRFLPPTKVDKCRILDSIVSHGCFLRE 408
Query: 418 CTVEHSIV 425
C+V+HSIV
Sbjct: 409 CSVQHSIV 416
|
|
| TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1271 (452.5 bits), Expect = 1.3e-158, Sum P(2) = 1.3e-158
Identities = 233/341 (68%), Positives = 279/341 (81%)
Query: 85 LERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI 144
LE + DP+ VA+IILGGGAGT+LFPLT R A PAVP+ G YRLID+PMSNCINSGINK+
Sbjct: 80 LETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKV 139
Query: 145 FVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTW 204
++LTQ+NSASLNRH+AR Y NG FGDG+VEVLAATQTPGESGK WFQGTADAVRQF W
Sbjct: 140 YILTQYNSASLNRHLARAYNSNGLGFGDGYVEVLAATQTPGESGKRWFQGTADAVRQFHW 199
Query: 205 VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI 264
+FEDA++++IE+V IL GDHLYRMDYMDFIQ H ADI+ISC + + RASD+GL+KI
Sbjct: 200 LFEDARSKDIEDVLILSGDHLYRMDYMDFIQDHRQSGADISISCIPIDDRRASDFGLMKI 259
Query: 265 DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324
D+ GR+ F+EKP G +LKAM VDT++LG S +EA K PY+ASMGVYVFKK++L LLRW
Sbjct: 260 DDKGRVISFSEKPKGDDLKAMAVDTTILGLSKEEAEKKPYIASMGVYVFKKEILLNLLRW 319
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
R+PT+NDFGSEIIP + E V AY+F DYWEDIGTI+SF+EAN+ALT+ AF FYD
Sbjct: 320 RFPTANDFGSEIIPFSAKEFYVNAYLFNDYWEDIGTIRSFFEANLALTEHPGAFSFYDAA 379
Query: 385 TPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV 425
P YTS R LPP+KIDN ++ D+IISHG FL C +EHSIV
Sbjct: 380 KPIYTSRRNLPPSKIDNSKLIDSIISHGSFLTNCLIEHSIV 420
|
|
| TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
Identities = 191/350 (54%), Positives = 252/350 (72%)
Query: 90 VDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFV 146
+DP +V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+V
Sbjct: 82 LDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 141
Query: 147 LTQFNSASLNRHIARTYFGN-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205
LTQFNSASLNRH++R Y N G +GFVEVLAA Q+P NWFQGTADAVRQ+ W+
Sbjct: 142 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWL 199
Query: 206 FEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
FE+ N+ IL GDHLYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID
Sbjct: 200 FEE---HNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKID 256
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
GRI +FAEKP G +LKAM+VDT++LG Q A++ P++ASMG+YV +DV+ LLR +
Sbjct: 257 EEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQ 316
Query: 326 YPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDP 383
+P +NDFGSE+IP A + VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD
Sbjct: 317 FPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDR 376
Query: 384 KTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVDYYQTESE 433
P YT PR+LPP+K+ + + D++I GC ++ C + HS+V SE
Sbjct: 377 SAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISE 426
|
|
| UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 4.0e-121, Sum P(2) = 4.0e-121
Identities = 188/343 (54%), Positives = 246/343 (71%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
+V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+VLTQFNSA
Sbjct: 83 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA 142
Query: 154 SLNRHIARTYFGN-GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SLNRH++R Y N G +GFVEVLAA Q+P NWFQGTADAVRQ+ W+FE+
Sbjct: 143 SLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP--DNPNWFQGTADAVRQYLWLFEE---H 197
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
N+ IL GDHLYRMDY FIQ+H + D+DIT++ + E RA+ +GL+KID GRI +
Sbjct: 198 NVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVE 257
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332
FAEKP G LKAM VDT++LG A++ PY+ASMG+YV K+V+ +LLR ++P +NDF
Sbjct: 258 FAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDF 317
Query: 333 GSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTS 390
GSE+IP A + VQAY++ YWEDIGTI++FY AN+ +TK+ P F FYD P YT
Sbjct: 318 GSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQ 377
Query: 391 PRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIVDYYQTESE 433
PR LPP+K+ + + D++I GC ++ C + HS+V SE
Sbjct: 378 PRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISE 420
|
|
| TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 176/443 (39%), Positives = 254/443 (57%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++VAAI+ GGG+ ++L+PLT + A+P+A YRLID +SNCINSGI KI+ +TQFNS
Sbjct: 53 QSVAAIVFGGGSDSELYPLTKTRSKGAIPIAANYRLIDAVISNCINSGITKIYAITQFNS 112
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SLN H+++ Y G G D FVEV+AA Q+ + G WFQGTADA+R+ WVFE+
Sbjct: 113 TSLNSHLSKAYSGFGLG-KDRFVEVIAAYQSLEDQG--WFQGTADAIRRCLWVFEEFP-- 167
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD----YGLVKIDNMG 268
+ +L G HLY+MDY I+ H ADITI VG S +D +G +++D+
Sbjct: 168 -VTEFLVLPGHHLYKMDYKMLIEDHRRSRADITI----VGLSSVTDHDFGFGFMEVDSTN 222
Query: 269 RIAQFAEKPSGANLK-AMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327
+ +F K + A + T G S C V S G+YV ++ + KLLR
Sbjct: 223 AVTRFTIKGQQDLISVANRTATRSDGTS-----SCS-VPSAGIYVIGREQMVKLLRECLI 276
Query: 328 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTP 386
S D SEIIP AI E V+A++F YWED+ +I ++Y ANM K ++ FYD + P
Sbjct: 277 KSKDLASEIIPGAISEGMKVKAHMFDGYWEDVRSIGAYYRANMESIK---SYRFYDRQCP 333
Query: 387 FYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV--------------------D 426
YT PR LPP+ + I ++II GC L +C + S+V D
Sbjct: 334 LYTMPRCLPPSSMSVAVITNSIIGDGCILDKCVIRGSVVGMRTRIADEVIVEDSIIVGSD 393
Query: 427 YYQTESEIASLLAEGKVPI--GVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 484
Y+ E ++ E K+ I G+G ++IR I+DKN +IGK+V+I+N+D+V+E +R
Sbjct: 394 IYEMEEDVRRKGKEKKIEIRIGIGEKSRIRRAIVDKNARIGKNVMIINRDNVEEGNREAQ 453
Query: 485 GFYIRSGITIIMEKATIEDGMVI 507
G+ IR GI II+ A I + ++
Sbjct: 454 GYVIREGIIIILRNAVIPNDSIL 476
|
|
| TIGR_CMR|SO_1498 SO_1498 "glucose-1-phosphate adenylyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 158/419 (37%), Positives = 228/419 (54%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG G++L LT A PA+ G +R+ID P+SNCINSGI ++ V+TQ+ S SL
Sbjct: 16 ALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLI 75
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
RH+ R + G+ VE+L A+Q E NW+QGTADAV Q + ++ +
Sbjct: 76 RHVMRGWGHFKKELGES-VEILPASQRYSE---NWYQGTADAVFQNIDII---RHELPKY 128
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD-YGLVKIDNMGRIAQFAE 275
V +L GDH+YRMDY + +H + AD+T+SC V + A+ +G++++D+ RI F E
Sbjct: 129 VMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRILGFEE 188
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WRYPTSNDF 332
KP L P KC +ASMG YVF + LF+ L+ + DF
Sbjct: 189 KPQ------------LPKHCPGNPEKC--LASMGNYVFNTEFLFEQLKKDAQNAESDRDF 234
Query: 333 GSEIIPAAIMEHDVQAYIFRD-------YWEDIGTIKSFYEANMALTKESPAFHFYDPKT 385
G +IIP+ I +H V AY F+ YW D+GT+ SF+ ANM L +PA + YD K
Sbjct: 235 GKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDAKW 294
Query: 386 PFYTSPRFLPPTKI---DNCR---IKDAIISHGCFLRECTVEHSIVDYYQTESEIASLLA 439
P +T LPP K D+ R D+IIS GC + TV S++ + + S++
Sbjct: 295 PIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVL-FNEVRVCSYSVVE 353
Query: 440 EGKV-P-IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITII 495
+ V P + V R+ KI+N IID+ I + VI D DR + GF + GIT++
Sbjct: 354 DSVVLPDVVVLRHCKIKNAIIDRGCIIPEGTVIGYNHD---HDRAK-GFRVSEKGITLV 408
|
|
| TIGR_CMR|BA_5122 BA_5122 "glucose-1-phosphate adenylyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 72/195 (36%), Positives = 104/195 (53%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L GG G++L LT A PAVP G YR+ID +SNC NSGI + +LTQ+ L+
Sbjct: 9 AMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELH 68
Query: 157 RHIARTYFGNGTNFG--DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNI 214
+I GN + G V VL SG W+ GTA A+ Q +
Sbjct: 69 NYIG---IGNAWDLDRVSGGVTVLPPYAE--SSGVKWYTGTASAIYQNLNYLSQYEP--- 120
Query: 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
E V IL GDH+Y+MDY + H++++AD++IS V AS +G++ + I +F
Sbjct: 121 EYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFE 180
Query: 275 EKPS--GANLKAMQV 287
EKP +NL +M +
Sbjct: 181 EKPQFPRSNLASMGI 195
|
|
| UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 133/423 (31%), Positives = 218/423 (51%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++ A+IL GG G++L PLT A PAVP G YR+ID ++NC++SG+ +I VLTQ+ S
Sbjct: 2 QDTLAVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRRILVLTQYKS 61
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SL++H+ + G+ F+ V+ G GK W++GTADA+ W+ A++
Sbjct: 62 HSLHKHLRNGWSIFNPELGE-FITVVPPQMRKG--GK-WYEGTADALFHNMWLL--ARS- 114
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ + V +L GDH+YRMDY ++ H+ ++A +TI+C V AS +G++ ID+ RI
Sbjct: 115 DAKYVVVLSGDHIYRMDYAAMLEEHISKNATLTIACMQVPRHEASAFGVMAIDDDSRITC 174
Query: 273 FAEKPSGANLKAMQVDTSL--LG---FSPQEARKC---PYVASMGVYVFKKDVLFKLLRW 324
F EKP+ + D SL +G F+ +K + F KDV+ KL+
Sbjct: 175 FVEKPADPPCIPNRPDHSLASMGIYIFNMDVLKKALTEDAEIEQSSHDFGKDVIPKLIA- 233
Query: 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTKESPAFHFYDP 383
T + F + + RD YW D+GTI SFY+ANM L + P + Y
Sbjct: 234 ---TGSVFAYSFCSG-------KGRVARDCYWRDVGTIDSFYDANMDLLQPVPPMNLYQK 283
Query: 384 KTPFYTSPRFLPPTK-IDNCRIKD-----AIISHGCFLRECTVEHSIVDYYQTESEIASL 437
T + PP + + + + +II++G +V+HSI+ ++ A L
Sbjct: 284 NWAIRTYEQQYPPARTVSSATGNEGIFINSIIANGVINSGGSVQHSIISSNVRINDSA-L 342
Query: 438 LAEGKV--PIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRS-GITI 494
+ + + + VG K+ +CIIDK+VKI + + +++ R F+I G+ +
Sbjct: 343 IVDSILFDDVEVGEGCKLIHCIIDKHVKI-PPYTEIGLNPIEDRKR----FHISERGVVV 397
Query: 495 IME 497
+ E
Sbjct: 398 VPE 400
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| B2IUY3 | GLGC_NOSP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5756 | 0.8027 | 0.9487 | yes | no |
| P12300 | GLGL3_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6528 | 0.8205 | 0.832 | N/A | no |
| A5GLA9 | GLGC_SYNPW | 2, ., 7, ., 7, ., 2, 7 | 0.5148 | 0.8047 | 0.9466 | yes | no |
| Q00081 | GLGL1_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.7547 | 0.8856 | 0.9553 | N/A | no |
| B8HM61 | GLGC_CYAP4 | 2, ., 7, ., 7, ., 2, 7 | 0.5321 | 0.8027 | 0.9487 | yes | no |
| B1XLF1 | GLGC_SYNP2 | 2, ., 7, ., 7, ., 2, 7 | 0.5484 | 0.7771 | 0.9184 | yes | no |
| P55242 | GLGL2_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6143 | 0.9802 | 0.9576 | N/A | no |
| P55243 | GLGL3_SOLTU | 2, ., 7, ., 7, ., 2, 7 | 0.6008 | 0.9033 | 0.9482 | N/A | no |
| P55241 | GLGL1_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.548 | 0.9270 | 0.9108 | N/A | no |
| P52415 | GLGC_SYNY3 | 2, ., 7, ., 7, ., 2, 7 | 0.5458 | 0.8027 | 0.9271 | N/A | no |
| B1WT08 | GLGC_CYAA5 | 2, ., 7, ., 7, ., 2, 7 | 0.5321 | 0.8027 | 0.9487 | yes | no |
| Q3MBJ4 | GLGC_ANAVT | 2, ., 7, ., 7, ., 2, 7 | 0.5573 | 0.8027 | 0.9487 | yes | no |
| P12299 | GLGL2_WHEAT | 2, ., 7, ., 7, ., 2, 7 | 0.6430 | 0.8698 | 0.8448 | N/A | no |
| P55233 | GLGL1_BETVU | 2, ., 7, ., 7, ., 2, 7 | 0.6266 | 0.9783 | 0.9501 | N/A | no |
| P55231 | GLGL3_ARATH | 2, ., 7, ., 7, ., 2, 7 | 0.6856 | 0.9861 | 0.9596 | yes | no |
| Q5N3K9 | GLGC_SYNP6 | 2, ., 7, ., 7, ., 2, 7 | 0.5481 | 0.8047 | 0.9488 | yes | no |
| P55234 | GLGL2_MAIZE | 2, ., 7, ., 7, ., 2, 7 | 0.5752 | 0.9546 | 0.9289 | N/A | no |
| P30524 | GLGL1_HORVU | 2, ., 7, ., 7, ., 2, 7 | 0.6408 | 0.8698 | 0.8432 | N/A | no |
| B7KDB8 | GLGC_CYAP7 | 2, ., 7, ., 7, ., 2, 7 | 0.5481 | 0.8027 | 0.9487 | yes | no |
| P30521 | GLGC_NOSS1 | 2, ., 7, ., 7, ., 2, 7 | 0.5573 | 0.8027 | 0.9487 | yes | no |
| B7K5U7 | GLGC_CYAP8 | 2, ., 7, ., 7, ., 2, 7 | 0.5527 | 0.8027 | 0.9487 | yes | no |
| Q31QN4 | GLGC_SYNE7 | 2, ., 7, ., 7, ., 2, 7 | 0.5481 | 0.8047 | 0.9488 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_Genewise1_v1.C_LG_IX1717 | glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (By similarity) (527 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.XV.361.1 | hypothetical protein (586 aa) | • | • | • | • | 0.957 | |||||
| gw1.164.92.1 | hypothetical protein (387 aa) | • | • | • | • | 0.949 | |||||
| gw1.XVII.1126.1 | hypothetical protein (688 aa) | • | • | • | • | 0.943 | |||||
| estExt_fgenesh4_pg.C_LG_IX1158 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa) | • | • | • | • | 0.933 | |||||
| estExt_Genewise1_v1.C_LG_IV2986 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa) | • | • | • | • | 0.931 | |||||
| estExt_Genewise1_v1.C_LG_IV0101 | hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (950 aa) | • | • | • | 0.927 | ||||||
| estExt_fgenesh4_pg.C_LG_XV1054 | phosphoglucomutase (EC-5.4.2.2) (551 aa) | • | • | 0.906 | |||||||
| eugene3.00121193 | phosphoglucomutase (EC-5.4.2.2) (631 aa) | • | • | 0.905 | |||||||
| estExt_fgenesh4_pm.C_LG_VIII0571 | phosphoglucomutase (EC-5.4.2.2) (582 aa) | • | • | 0.905 | |||||||
| estExt_fgenesh4_pg.C_LG_X0989 | phosphoglucomutase (EC-5.4.2.2) (582 aa) | • | • | 0.905 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 507 | |||
| PLN02241 | 436 | PLN02241, PLN02241, glucose-1-phosphate adenylyltr | 0.0 | |
| PRK02862 | 429 | PRK02862, glgC, glucose-1-phosphate adenylyltransf | 0.0 | |
| TIGR02091 | 361 | TIGR02091, glgC, glucose-1-phosphate adenylyltrans | 1e-167 | |
| COG0448 | 393 | COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb | 1e-128 | |
| PRK00725 | 425 | PRK00725, glgC, glucose-1-phosphate adenylyltransf | 1e-104 | |
| PRK00844 | 407 | PRK00844, glgC, glucose-1-phosphate adenylyltransf | 1e-100 | |
| PRK05293 | 380 | PRK05293, glgC, glucose-1-phosphate adenylyltransf | 5e-96 | |
| pfam00483 | 247 | pfam00483, NTP_transferase, Nucleotidyl transferas | 9e-90 | |
| cd02508 | 200 | cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory | 2e-57 | |
| COG1208 | 358 | COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph | 2e-36 | |
| cd04181 | 217 | cd04181, NTP_transferase, NTP_transferases catalyz | 2e-33 | |
| TIGR02092 | 369 | TIGR02092, glgD, glucose-1-phosphate adenylyltrans | 1e-30 | |
| cd04651 | 104 | cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly | 8e-21 | |
| cd06915 | 223 | cd06915, NTP_transferase_WcbM_like, WcbM_like is a | 6e-16 | |
| cd04189 | 236 | cd04189, G1P_TT_long, G1P_TT_long represents the l | 7e-15 | |
| cd06426 | 220 | cd06426, NTP_transferase_like_2, NTP_trnasferase_l | 1e-14 | |
| TIGR03992 | 393 | TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph | 2e-14 | |
| COG1209 | 286 | COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel | 3e-14 | |
| TIGR01208 | 353 | TIGR01208, rmlA_long, glucose-1-phosphate thymidyl | 8e-11 | |
| cd02538 | 240 | cd02538, G1P_TT_short, G1P_TT_short is the short f | 4e-07 | |
| TIGR01207 | 286 | TIGR01207, rmlA, glucose-1-phosphate thymidylyltra | 1e-06 | |
| PRK15480 | 292 | PRK15480, PRK15480, glucose-1-phosphate thymidylyl | 1e-05 | |
| cd02507 | 216 | cd02507, eIF-2B_gamma_N_like, The N-terminal of eI | 3e-05 | |
| cd05787 | 79 | cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit | 3e-05 | |
| cd02541 | 267 | cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca | 3e-05 | |
| cd06425 | 233 | cd06425, M1P_guanylylT_B_like_N, N-terminal domain | 1e-04 | |
| cd04198 | 214 | cd04198, eIF-2B_gamma_N, The N-terminal domain of | 2e-04 | |
| cd02540 | 229 | cd02540, GT2_GlmU_N_bac, N-terminal domain of bact | 4e-04 | |
| cd06422 | 221 | cd06422, NTP_transferase_like_1, NTP_transferase_l | 0.002 |
| >gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 822 bits (2125), Expect = 0.0
Identities = 317/438 (72%), Positives = 363/438 (82%), Gaps = 24/438 (5%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN 151
PK+VAAIILGGGAGT+LFPLT R A PAVP+ G YRLIDIPMSNCINSGINKI+VLTQFN
Sbjct: 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60
Query: 152 SASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210
SASLNRH++R Y FGNG NFGDGFVEVLAATQTPGE G WFQGTADAVRQF W+FEDAK
Sbjct: 61 SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
N+N+E V IL GDHLYRMDYMDF+Q H + ADITI+C V ESRASD+GL+KID+ GRI
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330
+F+EKP G LKAMQVDT++LG SP+EA++ PY+ASMG+YVFKKDVL KLLRWR+PT+N
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238
Query: 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYT 389
DFGSEIIP AI E ++VQAY+F YWEDIGTIKSFYEAN+ALTK+ P F FYDP P YT
Sbjct: 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYT 298
Query: 390 SPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV--------------------DYYQ 429
SPRFLPP+KI++CRI D+IISHGCFLREC +EHS+V DYY+
Sbjct: 299 SPRFLPPSKIEDCRITDSIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYE 358
Query: 430 TESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIR 489
TE EIASLLAEGKVPIG+G NTKIRN IIDKN +IGK+VVI+NKD VQEADR E G+YIR
Sbjct: 359 TEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEEGYYIR 418
Query: 490 SGITIIMEKATIEDGMVI 507
SGI +I++ A I DG VI
Sbjct: 419 SGIVVILKNAVIPDGTVI 436
|
Length = 436 |
| >gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 646 bits (1670), Expect = 0.0
Identities = 239/436 (54%), Positives = 306/436 (70%), Gaps = 29/436 (6%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K V AIILGGGAGT+L+PLT A PAVP+AG YRLIDIP+SNCINSGINKI+VLTQFNS
Sbjct: 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNS 61
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
ASLNRHI++TY N F GFVEVLAA QTP +WFQGTADAVR++ W F+
Sbjct: 62 ASLNRHISQTY--NFDGFSGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQ---EW 114
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+++ IL GD LYRMDY F+Q H + ADIT++ V E AS +GL+K D+ GRI +
Sbjct: 115 DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITE 174
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332
F+EKP G LKAM VDTS LG SP+EA+ PY+ASMG+YVF +DVLF LL + P DF
Sbjct: 175 FSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLN-KNPEYTDF 233
Query: 333 GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE-SPAFHFYDPKTPFYTSP 391
G EIIP AI ++ VQ+Y+F YWEDIGTI++FYEAN+ALT++ +P F FYD K P YT
Sbjct: 234 GKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRA 293
Query: 392 RFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV--------------------DYYQTE 431
R+LPP+K+ + I ++II+ GC ++ C++ HS++ D+Y++
Sbjct: 294 RYLPPSKLLDATITESIIAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESS 353
Query: 432 SEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 491
E L EGK P+G+G T I+ IIDKN +IG +V IVNKD+V+EADR + GFYIR G
Sbjct: 354 EEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDG 413
Query: 492 ITIIMEKATIEDGMVI 507
I ++++ A I DG VI
Sbjct: 414 IVVVVKNAVIPDGTVI 429
|
Length = 429 |
| >gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Score = 475 bits (1225), Expect = e-167
Identities = 177/387 (45%), Positives = 230/387 (59%), Gaps = 37/387 (9%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L GG G++L PLT R A PAVP G YR+ID P+SNCINSGI +I VLTQ+ S SLN
Sbjct: 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLN 60
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
RHI R + +G F DGFV +L A Q ESG +W+QGTADAV Q + ED + E
Sbjct: 61 RHIQRGWDFDG--FIDGFVTLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEY 113
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V IL GDH+Y+MDY + H++ AD+TI+C V AS +G++++D GRI F EK
Sbjct: 114 VLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDEDGRIVDFEEK 173
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR---YPTSNDFG 333
P AN ++ +ASMG+Y+F KDVL +LL +S+DFG
Sbjct: 174 P--ANPPSIP------------GMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219
Query: 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRF 393
+IIP A+ E VQAY+F YW D+GTI SF+EANM L P F YD K P YT F
Sbjct: 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEF 279
Query: 394 LPPTKIDNCR--IKDAIISHGCFLRECTVEHSI------VDYYQTESEIASLLAEGKVPI 445
LPP K + + D+++S GC + TV HS+ + S + + G V
Sbjct: 280 LPPAKFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSG---STVEDSVIMGDV-- 334
Query: 446 GVGRNTKIRNCIIDKNVKIGKDVVIVN 472
G+GR IRN IIDKNV+IG+ VVI N
Sbjct: 335 GIGRGAVIRNAIIDKNVRIGEGVVIGN 361
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361 |
| >gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-128
Identities = 162/423 (38%), Positives = 226/423 (53%), Gaps = 39/423 (9%)
Query: 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN 151
KNV AIIL GG G++L PLT A PAVP G YR+ID +SNC+NSGI +I VLTQ+
Sbjct: 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYK 62
Query: 152 SASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN 211
S SLN HI R + + +G V +L A Q G G+ W++GTADA+ Q + +
Sbjct: 63 SHSLNDHIGRGWPW-DLDRKNGGVFILPAQQREG--GERWYEGTADAIYQNLLIIRRS-- 117
Query: 212 RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
+ E V IL GDH+Y+MDY D + H++ AD+T++ V AS +G++ +D GRI
Sbjct: 118 -DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRII 176
Query: 272 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYPT 328
+F EKP SL ASMG+Y+F D+L +LL +
Sbjct: 177 EFVEKP-----ADGPPSNSL--------------ASMGIYIFNTDLLKELLEEDAKDPNS 217
Query: 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFY 388
S+DFG +IIP + V AY F YW D+GTI S+YEANM L P + YD P Y
Sbjct: 218 SHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIY 277
Query: 389 TSPRFLPPTKIDNCR-IKDAIISHGCFLRECTVEHSIVD---YYQTESEIASLLAEGKVP 444
T + LPP K N + +++++ GC + TVE+S++ S I + + V
Sbjct: 278 TKNKNLPPAKFVNDSEVSNSLVAGGCII-SGTVENSVLFRGVRIGKGSVIENSVIMPDV- 335
Query: 445 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDG 504
+G +R IIDKNV IG+ VVI D E DR F GI ++ + I+
Sbjct: 336 -EIGEGAVLRRAIIDKNVVIGEGVVIGG--DKPEEDRK--RFRSEEGIVVVPKGMVIKLD 390
Query: 505 MVI 507
++
Sbjct: 391 IME 393
|
Length = 393 |
| >gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = e-104
Identities = 154/452 (34%), Positives = 224/452 (49%), Gaps = 73/452 (16%)
Query: 78 MTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCI 137
L R+ ++ A+IL GG G++L LT + A PAV G +R+ID +SNCI
Sbjct: 1 EKNDSLMLARQL--TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCI 58
Query: 138 NSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG----FVEVLAATQTPGESGKNWFQ 193
NSGI +I VLTQ+ + SL RHI R G +F FV++L A Q +NW++
Sbjct: 59 NSGIRRIGVLTQYKAHSLIRHIQR-----GWSFFREELGEFVDLLPAQQR--VDEENWYR 111
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
GTADAV Q + + + V IL GDH+Y+MDY + HV+ AD T++C V
Sbjct: 112 GTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPR 168
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAM--QVDTSLLGFSPQEARKCPYVASMGVY 311
AS +G++ +D RI F EKP AN AM D SL ASMG+Y
Sbjct: 169 EEASAFGVMAVDENDRITAFVEKP--ANPPAMPGDPDKSL--------------ASMGIY 212
Query: 312 VFKKDVLFKLLRW--RYPTSN-DFGSEIIPAAIMEHDVQAYIFRD-----------YWED 357
VF D L++LL P S+ DFG +IIP + E V A+ F D YW D
Sbjct: 213 VFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRD 272
Query: 358 IGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKI----DNCR--IKDAIISH 411
+GT+ ++++AN+ L +P YD P +T LPP K R ++++S
Sbjct: 273 VGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGRRGMAINSLVSG 332
Query: 412 GCFLRECTVEHSIV-------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 464
GC + V S++ + E + LL + VGR+ ++R C+ID+ I
Sbjct: 333 GCIISGAVVRRSVLFSRVRVNSFSNVEDSV--LLPDVN----VGRSCRLRRCVIDRGCVI 386
Query: 465 GKDVVIVNKDDVQEADRPELGFYI-RSGITII 495
+ +VI +D ++A R F GI ++
Sbjct: 387 PEGMVI-GEDPEEDAKR----FRRSEEGIVLV 413
|
Length = 425 |
| >gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = e-100
Identities = 145/431 (33%), Positives = 212/431 (49%), Gaps = 61/431 (14%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
V AI+L GG G +L PLT A PAVP G YRLID +SN +NSG +I+VLTQ+ S
Sbjct: 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKS 63
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
SL+RHI++T+ + ++ + A Q GK W+ G+ADA+ Q + ED
Sbjct: 64 HSLDRHISQTW--RLSGLLGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDEDP- 117
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
+ V + DH+YRMD + H++ A +T++ V AS +G++++D GRI
Sbjct: 118 --DYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDGRIRG 175
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTS 329
F EKP A+ + D P EA +ASMG YVF D L LR +S
Sbjct: 176 FLEKP--ADPPGLPDD-------PDEA-----LASMGNYVFTTDALVDALRRDAADEDSS 221
Query: 330 NDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPA 377
+D G +IIP + Y F R YW D+GTI ++Y+A+M L P
Sbjct: 222 HDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV 281
Query: 378 FHFYDPKTPFYTSPRFLPPTKI-----DNCRIKDAIISHGCFLRECTVEHSI------VD 426
F+ Y+ + P YTS LPP K +D+++S G + TV +S+ V+
Sbjct: 282 FNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVE 341
Query: 427 YYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI-VNKDDVQEADRPELG 485
+ S+L +G +GR +R I+DKNV + I V+ E DR
Sbjct: 342 SGAEVED--SVLMDGVR---IGRGAVVRRAILDKNVVVPPGATIGVDL----EEDRR--R 390
Query: 486 FYI-RSGITII 495
F + GI ++
Sbjct: 391 FTVSEGGIVVV 401
|
Length = 407 |
| >gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 295 bits (758), Expect = 5e-96
Identities = 145/432 (33%), Positives = 208/432 (48%), Gaps = 93/432 (21%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K + A+IL GG GT+L LT A PAVP G YR+ID +SNC NSGI+ + VLTQ+
Sbjct: 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQP 61
Query: 153 ASLNRHIARTYFGNGTNFG----DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFED 208
LN HI G G+ + +G V +L G W++GTA A+ Q
Sbjct: 62 LELNNHI-----GIGSPWDLDRINGGVTILPPYS--ESEGGKWYKGTAHAIYQ------- 107
Query: 209 AKNRNI--------ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYG 260
NI E V IL GDH+Y+MDY + H +++AD+TI+ V AS +G
Sbjct: 108 ----NIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFG 163
Query: 261 LVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320
++ D RI +F EKP N K S L ASMG+Y+F L +
Sbjct: 164 IMNTDENMRIVEFEEKP--KNPK------SNL-------------ASMGIYIFNWKRLKE 202
Query: 321 LLRWRYPT---SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376
L S+DFG +IP + E + AY F+ YW+D+GTI+S +EANM L +
Sbjct: 203 YLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPEN 262
Query: 377 AFHFYDPKTPFYTSPRFLPPTKI-DNCRIKDAIISHGCFLRECTVEHSIVDYYQTESEIA 435
+ +D Y+ LPP I +N ++K++++ GC + TVEHS+
Sbjct: 263 PLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVV-YGTVEHSV----------- 310
Query: 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITII 495
L +G + VG + +++ +I KIG++VVI II
Sbjct: 311 --LFQG---VQVGEGSVVKDSVIMPGAKIGENVVIER--------------------AII 345
Query: 496 MEKATIEDGMVI 507
E A I DG++I
Sbjct: 346 GENAVIGDGVII 357
|
Length = 380 |
| >gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 9e-90
Identities = 89/284 (31%), Positives = 129/284 (45%), Gaps = 44/284 (15%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINK-IFVLTQFNSASL 155
AIIL GG+GT+L+PLT A P VPV Y +I +S +N+GI + I + TQ + +
Sbjct: 2 AIILAGGSGTRLWPLTRTLAKPLVPVLDKYPMIQYTLSRLMNAGIREPIVICTQEHRFLV 61
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ FG ++V A Q GTA AV D E
Sbjct: 62 AEQLGDGS-----KFG---LQVTYALQPEPR-------GTAPAVALAADFLGDDDP---E 103
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
V +L GDH+YRMD+ + +Q + AD T++ V + YG+++ D GR+ +F E
Sbjct: 104 LVLVLGGDHIYRMDFEEAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDENGRVIRFVE 163
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDFG 333
KP K ASMG+Y F V L + D
Sbjct: 164 KPDLP--------------------KASNYASMGIYFFNSGVFLFLAKYLKELARGEDEI 203
Query: 334 SEIIPAAIMEHDVQ-AYIFRD--YWEDIGTIKSFYEANMALTKE 374
++ IPAA+ + D+ A++FR YW D+GT S +EAN+ L
Sbjct: 204 TDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLWEANLKLLTG 247
|
This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247 |
| >gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Score = 188 bits (481), Expect = 2e-57
Identities = 67/152 (44%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL GG GT+L PLT + A PAVP G YRLID P+SN +NSGI + VLTQ+ S SLN
Sbjct: 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLN 60
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
H+ + + +G + +L Q G +W++GTADA+ Q E + E
Sbjct: 61 DHLGSGKEWDL-DRKNGGLFILPPQQRKGG---DWYRGTADAIYQNLDYIERSDP---EY 113
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISC 248
V IL GDH+Y MDY + + H++ ADIT+
Sbjct: 114 VLILSGDHIYNMDYREMLDFHIESGADITVVY 145
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. Length = 200 |
| >gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 96/386 (24%), Positives = 155/386 (40%), Gaps = 67/386 (17%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA 153
+ A+IL GG GT+L PLT P +P+AG LI+ + +G+ +I ++
Sbjct: 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAG-KPLIEYVLEALAAAGVEEIVLVV----G 55
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR- 212
L I YFG+G G V+ GTA A++ A +
Sbjct: 56 YLGEQIEE-YFGDGEGLGVRITYVVEKEPL----------GTAGALKN-------ALDLL 97
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIA 271
++ +L GD L +D + ++ H + A TI A S++G+V+ D GR+
Sbjct: 98 GGDDFLVLNGDVLTDLDLSELLEFHKKKGALATI--ALTRVLDPSEFGVVETDDGDGRVV 155
Query: 272 QFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331
+F EKP + + G+Y+F +V F + D
Sbjct: 156 EFREKPGPEEPP-------------------SNLINAGIYIFDPEV-FDYI--EKGERFD 193
Query: 332 FGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTS 390
F E++PA + DV Y+F YW DIGT + EAN L + + P
Sbjct: 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVII 253
Query: 391 PR--FLPPTKI-DNCRI-KDAIISHGCFL-RECTVEHSIVDYYQTESEI-ASLLAEGKVP 444
+ P I +I A+I + T+ + EI S++ + V
Sbjct: 254 RSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNG--------VEIKNSIIMDNVV- 304
Query: 445 IGVGRNTKIRNCIIDKNVKIGKDVVI 470
+G + I + II +N KIG ++I
Sbjct: 305 --IGHGSYIGDSIIGENCKIGASLII 328
|
Length = 358 |
| >gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-33
Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 48/264 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT+L PLT P +P+AG +++ + +GI++I ++ + +
Sbjct: 1 AVILAAGKGTRLRPLTDTRPKPLLPIAG-KPILEYIIERLARAGIDEIILVVGYLGEQI- 58
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNI-E 215
YFG+G+ FG V + Q GTA AVR A++ +
Sbjct: 59 ----EEYFGDGSKFG---VNIEYVVQEEPL-------GTAGAVRN-------AEDFLGDD 97
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+ ++ GD L +D + ++ H ++ AD TI+ V S YG+V++D+ GR+ +F E
Sbjct: 98 DFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV--EDPSRYGVVELDDDGRVTRFVE 155
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
KP+ +A+ G+Y+F+ ++ + P D ++
Sbjct: 156 KPTLPE---------------------SNLANAGIYIFEPEI-LDYIPEILPRGEDELTD 193
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIG 359
IP I E V Y YW DIG
Sbjct: 194 AIPLLIEEGKVYGYPVDGYWLDIG 217
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217 |
| >gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 98/399 (24%), Positives = 168/399 (42%), Gaps = 65/399 (16%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++AII + L PLT ++P G YRLID P+SN +N+GI +F+ +
Sbjct: 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKE 60
Query: 153 -ASLNRHIARTYFGNGTNFG-----DG-FVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205
SL H+ G+G + DG FV + + R F+
Sbjct: 61 RQSLFDHL-----GSGREWDLHRKRDGLFVFPY---NDRDDLSEGGK-------RYFSQN 105
Query: 206 FEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID 265
E K E +L + +D ++ H + DIT+ V + AS+Y
Sbjct: 106 LEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYD----- 160
Query: 266 NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325
I +F E ++ L +E S+ +Y+ D+L +LL
Sbjct: 161 ---TILRFDESGKVKSIG------QNLNPEEEENI------SLDIYIVSTDLLIELLY-- 203
Query: 326 YPTSNDFGSEIIPAAIM-----EHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH- 379
G ++ E ++ AY + Y +I ++KS+Y+ANM L P
Sbjct: 204 --ECIQRGKLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLD--PQNFQ 259
Query: 380 --FYDPKTPFYTSPRFLPPTK-IDNCRIKDAIISHGCFLRECTVEHSIVD---YYQTESE 433
FY + P YT + PPT +N +++++++++GC + E VE+SI+ + ++
Sbjct: 260 SLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCII-EGKVENSILSRGVHVGKDAL 318
Query: 434 IA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471
I ++ + V +G + N IIDK+V I +V I
Sbjct: 319 IKNCIIMQRTV---IGEGAHLENVIIDKDVVIEPNVKIA 354
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 369 |
| >gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 8e-21
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 395 PPTKIDNCRIKDAIISHGCFLRECTVEHSIVD---YYQTESEIASLLAEGKVPIGVGRNT 451
PP +K++++S GC + TVE+S++ + S + + V G+GRN
Sbjct: 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPNV--GIGRNA 58
Query: 452 KIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATI 501
IR IIDKNV I VVI + A + GI ++ + I
Sbjct: 59 VIRRAIIDKNVVIPDGVVIGGDPEEDRAR----FYVTEDGIVVVGKGMVI 104
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104 |
| >gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 6e-16
Identities = 62/272 (22%), Positives = 105/272 (38%), Gaps = 51/272 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG GT+L + P PVAG ++ + GI++I + + L
Sbjct: 1 AVILAGGLGTRLRSVVKDLPKPLAPVAG-RPFLEYLLEYLARQGISRIVLSVGY----LA 55
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR-NIE 215
I YFG+G G P GT A++ A + +
Sbjct: 56 EQI-EEYFGDGYRGG--IRIYYVIEPEP--------LGTGGAIKN-------ALPKLPED 97
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+L GD + +D + + + AD T++ V + AS YG V +D GR+ F E
Sbjct: 98 QFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYGNVTVDGDGRVIAFVE 155
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
K GA + GVY+ +K++L ++ S ++
Sbjct: 156 KGPGAAPG--------------------LING-GVYLLRKEILAEIP--ADAFS--LEAD 190
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367
++PA + + + Y+ DIG + + A
Sbjct: 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223 |
| >gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 7e-15
Identities = 70/281 (24%), Positives = 104/281 (37%), Gaps = 62/281 (22%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+IL GG GT+L PLT +PVAG +I + + +GI I ++
Sbjct: 3 GLILAGGKGTRLRPLTYTRPKQLIPVAG-KPIIQYAIEDLREAGIEDIGIVV-----GPT 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G+G+ FG +L G A AV D E
Sbjct: 57 GEEIKEALGDGSRFGVRITYILQEEP----------LGLAHAV----LAARDFLGD--EP 100
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+ GD+L + ++ ++ DAD +I A V + R +G+ +D+ GRI + EK
Sbjct: 101 FVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVEDPRR--FGVAVVDD-GRIVRLVEK 157
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRYPTSNDF 332
P + S L A +GVY F + L+ WR
Sbjct: 158 P--------KEPPSNL-------------ALVGVYAFTPAIFDAISRLKPSWR------- 189
Query: 333 GSEIIPAAIME-----HDVQAYIFRDYWEDIGTIKSFYEAN 368
G I AI V I +W+D GT + EAN
Sbjct: 190 GELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEAN 230
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236 |
| >gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 64/282 (22%), Positives = 112/282 (39%), Gaps = 72/282 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+I+ GG GT+L PLT P + V G +++ + I G ++ S+N
Sbjct: 1 VVIMAGGKGTRLRPLTENTPKPMLKVGG-KPILETIIDRFIAQGFRNFYI-------SVN 52
Query: 157 --RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQ-----GTADAVRQFTWVFEDA 209
+ YFG+G+ FG V + ++ + GTA A+
Sbjct: 53 YLAEMIEDYFGDGSKFG---VNI------------SYVREDKPLGTAGALSLL------- 90
Query: 210 KNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR 269
+ + ++ GD L ++Y + H + +AD T+ C E + YG+V+ + GR
Sbjct: 91 PEKPTDPFLVMNGDILTNLNYEHLLDFHKENNADATV-CVREYEVQVP-YGVVETEG-GR 147
Query: 270 IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329
I EKP+ ++ + G+YV + +VL
Sbjct: 148 ITSIEEKPT-----------------------HSFLVNAGIYVLEPEVL------DLIPK 178
Query: 330 NDF--GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEAN 368
N+F ++I I E V + +YW DIG + + +AN
Sbjct: 179 NEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220 |
| >gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 72/283 (25%), Positives = 113/283 (39%), Gaps = 60/283 (21%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT++ PLT P +PVAG L++ + ++GI+ + +
Sbjct: 3 AVILAAGKGTRMRPLTETRPKPMLPVAG-KPLLEHIIEALRDAGIDDFVFVVGY----GK 57
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ R YFG+G+ G V + Q GTADA+ AK +
Sbjct: 58 EKV-REYFGDGSRGG---VPIEYVVQEEQL-------GTADALGS-------AKEYVDDE 99
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L GD L D ++ + + +A + A V SDYG+V+ D GR+ EK
Sbjct: 100 FLVLNGDVLLDSDLLERL---IRAEAP---AIAVVEVDDPSDYGVVETDG-GRVTGIVEK 152
Query: 277 PSGA--NLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGS 334
P NL + G+Y+F ++ F+LL + S
Sbjct: 153 PENPPSNL-----------------------INAGIYLFSPEI-FELLE-KTKLSPRGEY 187
Query: 335 EI---IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374
E+ + I E V+A +W D+G +AN AL
Sbjct: 188 ELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLDN 230
|
The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393 |
| >gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 72/288 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
+IL GG+GT+L PLT +PV +I P+ + +GI I ++
Sbjct: 3 GVILAGGSGTRLRPLTRVVPKQLLPVYD-KPMIYYPLETLMLAGIRDILIVVGPEDKPTF 61
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQT-PGESGKNWFQGTADAV---RQFTWVFEDAKNR 212
+ + G+G++FG V++ A Q P G A AV F
Sbjct: 62 KEL----LGDGSDFG---VDITYAVQPEPD--------GLAHAVLIAEDFV--------- 97
Query: 213 NIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQ 272
++ + GD++++ + ++ + + TI V + YG+V+ D G++
Sbjct: 98 GDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDDPSR--YGVVEFDEDGKVIG 155
Query: 273 FAEKPS--GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL--FKLLR--WRY 326
EKP +NL A G+Y + V K ++ R
Sbjct: 156 LEEKPKEPKSNL-----------------------AVTGLYFYDPSVFEAIKQIKPSAR- 191
Query: 327 PTSNDFG-SEIIPA--AIMEHD--VQAYIFRDYWEDIGTIKSFYEANM 369
G EI A +E V A + R +W D GT +S EAN
Sbjct: 192 ------GELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANN 233
|
Length = 286 |
| >gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-11
Identities = 85/399 (21%), Positives = 144/399 (36%), Gaps = 100/399 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL G GT+L PLT +PVA ++ + + +GI I ++ +
Sbjct: 2 ALILAAGKGTRLRPLTFTRPKQLIPVAN-KPILQYAIEDLAEAGITDIGIVV----GPVT 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G G FG ++ G A AV D ++
Sbjct: 57 GEEIKEIVGEGERFGAKITYIVQGEP----------LGLAHAVYTARDFLGD------DD 100
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+ GD+L + F++S ++D D I V + A +G+ +++ RI + EK
Sbjct: 101 FVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVLEDGKRILKLVEK 158
Query: 277 PSG--ANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR-----WRYPTS 329
P +NL A +G+Y+F + ++F+ ++ WR
Sbjct: 159 PKEPPSNL-----------------------AVVGLYMF-RPLIFEAIKNIKPSWR---- 190
Query: 330 NDFGSEIIPAAI---MEHD--VQAYIFRDYWEDIGTIKSFYEANMALTKE-SPAFHFYDP 383
G I AI +E V +W+D G + +AN + E D
Sbjct: 191 ---GELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQGVDD 247
Query: 384 KTPFYTSPRFLPPTKI------------DNCRIKDAIISH------GCFLRECTVEHSIV 425
++ KI ++C I+++ I G +R+ VEHSIV
Sbjct: 248 ESKIRGRVVVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIV 307
Query: 426 DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 464
ES I G +I + +I K V+I
Sbjct: 308 L---DESVI------------EGVQARIVDSVIGKKVRI 331
|
The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353 |
| >gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 68/297 (22%), Positives = 111/297 (37%), Gaps = 88/297 (29%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L+PLT + +PV +I P+S + +GI +I +++
Sbjct: 3 GIILAGGSGTRLYPLTKVVSKQLLPV-YDKPMIYYPLSTLMLAGIREILIIST------P 55
Query: 157 RHIARTY--FGNGTNFGDGFVEVLAATQ-TPGESGKNWFQGTADAV---RQFTWVFEDAK 210
+ G+G++ G + + A Q PG G A A +F
Sbjct: 56 EDLPLFKELLGDGSDLG---IRITYAVQPKPG--------GLAQAFIIGEEFI------- 97
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD---YGLVKIDNM 267
+ V ++ GD+++ Y + + R A A V +D YG+V+ D
Sbjct: 98 --GDDPVCLILGDNIF---YGQGLSPILQRAAAQKEG-ATVFGYEVNDPERYGVVEFDEN 151
Query: 268 GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327
GR+ EKP + K Y A G+Y + DV
Sbjct: 152 GRVLSIEEKP--------------------KKPKSNY-AVTGLYFYDNDVF--------- 181
Query: 328 TSNDFGSEIIPAAIME---HDV-QAYIFR-----------DYWEDIGTIKSFYEANM 369
+ ++ P+A E DV Y+ + W D GT +S EA+
Sbjct: 182 ---EIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASN 235
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240 |
| >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 28/184 (15%)
Query: 98 IILGGGAGTKLFPLTLRAATPAVPVAGCYR--LIDIPMSNCINSGINKIFVLTQFNSASL 155
IIL GG+GT+L+P+T + +P+ Y +I P+S + +GI I +++
Sbjct: 3 IILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 59
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ + G+G+ +G V + A Q + D + Q + ED +
Sbjct: 60 FQQL----LGDGSQWG---VNLSYAVQP-----------SPDGLAQAFIIGEDFIGG--D 99
Query: 216 NVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
A++ GD++ Y D D ++ R++ T+ V + YG+V+ D+ GR
Sbjct: 100 PSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPER--YGVVEFDSNGRAISIE 157
Query: 275 EKPS 278
EKP+
Sbjct: 158 EKPA 161
|
Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 286 |
| >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 41/186 (22%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
K IIL GG+GT+L+P+T+ + +P+ +I P+S + +GI I +++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYD-KPMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR 212
+ + G+G+ +G + Q + D + Q + E+
Sbjct: 61 TPRFQQL----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGG 102
Query: 213 NIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIA 271
++ A++ GD++ Y D +++ V++++ T+ V + YG+V+ D G
Sbjct: 103 --DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQNGTAI 158
Query: 272 QFAEKP 277
EKP
Sbjct: 159 SLEEKP 164
|
Length = 292 |
| >gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A++L G G++ PLT +PVA LID + +G+ ++FV+ +S ++
Sbjct: 3 AVVLADGFGSRFLPLTSDIPKALLPVANVP-LIDYTLEWLEKAGVEEVFVVCCEHSQAII 61
Query: 157 RHI 159
H+
Sbjct: 62 EHL 64
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216 |
| >gnl|CDD|100061 cd05787, LbH_eIF2B_epsilon, eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-05
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 447 VGRNTKIRNCIIDKNVKIGKDVVIVNK---DDVQEADRPELGFYIRSGITIIMEKATIED 503
+G T I+N +I +N KIGK+VVI N DDV D + I + +I + TI
Sbjct: 8 IGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPP 67
Query: 504 GMVI 507
G +I
Sbjct: 68 GSLI 71
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 79 |
| >gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 70/311 (22%), Positives = 106/311 (34%), Gaps = 81/311 (26%)
Query: 97 AIILGGGAGTKLFPLTLRAATPA--VPVAGCYRLIDIP-----MSNCINSGINKIFVLTQ 149
A+I G GT+ P T A P +P+ +D P + + +GI I ++T
Sbjct: 3 AVIPAAGLGTRFLPAT--KAIPKEMLPI------VDKPVIQYIVEEAVAAGIEDIIIVTG 54
Query: 150 FNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF--Q----GTADAVRQFT 203
++ H R+Y T G ++L + + + Q G AV
Sbjct: 55 RGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAV---- 110
Query: 204 WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADI----------TISCAAVGE 253
+ E A+L GD D I S + I+ V
Sbjct: 111 LCAKPFIGD--EPFAVLLGD--------DLIDSKEPCLKQLIEAYEKTGASVIAVEEVPP 160
Query: 254 SRASDYGLVKI----DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPY-VASM 308
S YG+VK ++ ++ EKP P+EA P +A +
Sbjct: 161 EDVSKYGIVKGEKIDGDVFKVKGLVEKPK-----------------PEEA---PSNLAIV 200
Query: 309 GVYVFKKDVLFKLLRWRYPTSNDFGSEI-----IPAAIMEHDVQAYIFRDYWEDIGTIKS 363
G YV D+ F +L P G EI I + E V AY+F D G
Sbjct: 201 GRYVLTPDI-FDILENTKP---GKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLG 256
Query: 364 FYEAN--MALT 372
+ +A AL
Sbjct: 257 YLKATVEFALK 267
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267 |
| >gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 30/135 (22%)
Query: 232 DFIQSHVDRDADITISCAAVGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTS 290
+ + H A+ TI V + S YG+V D N GRI +F EKP
Sbjct: 119 ELLDFHKKHGAEGTILVTKVEDP--SKYGVVVHDENTGRIERFVEKP------------- 163
Query: 291 LLGFSPQEARKCPYVASMGVYVFKKDVLFKL-LRWRYPTSNDFGSEIIPAAIMEHDVQAY 349
+ A G+Y+ VL ++ LR PTS EI P E + AY
Sbjct: 164 ------KVFVGNKINA--GIYILNPSVLDRIPLR---PTS--IEKEIFPKMASEGQLYAY 210
Query: 350 IFRDYWEDIGTIKSF 364
+W DIG K F
Sbjct: 211 ELPGFWMDIGQPKDF 225
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233 |
| >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG G++L+PLT +PVA +I P+ +G + V+ +
Sbjct: 3 AVILAGGGGSRLYPLTDNIPKALLPVAN-KPMIWYPLDWLEKAGFEDVIVVVPEEEQAEI 61
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQF 202
R++ N D EV GTAD++R
Sbjct: 62 STYLRSFPLNLKQKLD---EVTIVLDED--------MGTADSLRHI 96
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 |
| >gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 31/135 (22%)
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDYM-DFIQSHVDRDADITISCAAV 251
GT AV+Q A +V +L GD L + + +++H + AD+T+ A
Sbjct: 74 GTGHAVKQA----LPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTA-- 127
Query: 252 GESRASD---YGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308
D YG + D G++ + E + D + E K +
Sbjct: 128 ---ELEDPTGYGRIIRDGNGKVLRIVE----------EKDAT-------EEEKAIREVNA 167
Query: 309 GVYVFKKDVLFKLLR 323
G+Y F + LF+ L
Sbjct: 168 GIYAFDAEFLFEALP 182
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229 |
| >gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFV 146
A+IL G GT++ PLT P VPVAG + LID + +GI +I V
Sbjct: 2 AMILAAGLGTRMRPLTDTRPKPLVPVAG--KPLIDHALDRLAAAGIRRIVV 50
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 507 | |||
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 100.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 100.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 100.0 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 100.0 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 100.0 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 100.0 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 100.0 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 100.0 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 100.0 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 100.0 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 100.0 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 100.0 | |
| TIGR01105 | 297 | galF UTP-glucose-1-phosphate uridylyltransferase, | 100.0 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 100.0 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 100.0 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 100.0 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK10122 | 297 | GalU regulator GalF; Provisional | 100.0 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 100.0 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 100.0 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 100.0 | |
| cd02538 | 240 | G1P_TT_short G1P_TT_short is the short form of glu | 100.0 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 100.0 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 100.0 | |
| cd02541 | 267 | UGPase_prokaryotic Prokaryotic UGPase catalyses th | 100.0 | |
| TIGR02623 | 254 | G1P_cyt_trans glucose-1-phosphate cytidylyltransfe | 100.0 | |
| TIGR01099 | 260 | galU UTP-glucose-1-phosphate uridylyltransferase. | 100.0 | |
| PRK13389 | 302 | UTP--glucose-1-phosphate uridylyltransferase subun | 100.0 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 100.0 | |
| cd02524 | 253 | G1P_cytidylyltransferase G1P_cytidylyltransferase | 100.0 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 100.0 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 100.0 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 100.0 | |
| cd06426 | 220 | NTP_transferase_like_2 NTP_trnasferase_like_2 is a | 100.0 | |
| cd04197 | 217 | eIF-2B_epsilon_N The N-terminal domain of epsilon | 100.0 | |
| COG1210 | 291 | GalU UDP-glucose pyrophosphorylase [Cell envelope | 99.98 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 99.97 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 99.97 | |
| cd04183 | 231 | GT2_BcE_like GT2_BcbE_like is likely involved in t | 99.97 | |
| cd02507 | 216 | eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma | 99.96 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 99.95 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 99.95 | |
| cd04198 | 214 | eIF-2B_gamma_N The N-terminal domain of gamma subu | 99.95 | |
| TIGR01479 | 468 | GMP_PMI mannose-1-phosphate guanylyltransferase/ma | 99.92 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 99.91 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.91 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 99.89 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 99.87 | |
| PRK15460 | 478 | cpsB mannose-1-phosphate guanyltransferase; Provis | 99.82 | |
| COG4750 | 231 | LicC CTP:phosphocholine cytidylyltransferase invol | 99.76 | |
| COG0836 | 333 | {ManC} Mannose-1-phosphate guanylyltransferase [Ce | 99.76 | |
| PLN02917 | 293 | CMP-KDO synthetase | 99.75 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.61 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 99.6 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 99.58 | |
| PRK09382 | 378 | ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp | 99.56 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 99.55 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 99.53 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 99.53 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 99.51 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 99.5 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.48 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 99.42 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 99.42 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.41 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 99.39 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 99.35 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 99.35 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 99.33 | |
| KOG1461 | 673 | consensus Translation initiation factor 2B, epsilo | 99.26 | |
| COG2266 | 177 | GTP:adenosylcobinamide-phosphate guanylyltransfera | 99.26 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.23 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 99.22 | |
| PRK00560 | 196 | molybdopterin-guanine dinucleotide biosynthesis pr | 99.19 | |
| PRK14489 | 366 | putative bifunctional molybdopterin-guanine dinucl | 99.18 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 99.12 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 99.12 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 99.11 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 99.11 | |
| PF01128 | 221 | IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.1 | |
| COG1211 | 230 | IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt | 99.09 | |
| cd04193 | 323 | UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala | 99.08 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 99.06 | |
| PRK14490 | 369 | putative bifunctional molybdopterin-guanine dinucl | 99.04 | |
| cd04180 | 266 | UGPase_euk_like Eukaryotic UGPase-like includes UD | 99.0 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 98.96 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 98.94 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.93 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.91 | |
| COG1212 | 247 | KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase | 98.89 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.86 | |
| PRK14500 | 346 | putative bifunctional molybdopterin-guanine dinucl | 98.84 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.82 | |
| PTZ00339 | 482 | UDP-N-acetylglucosamine pyrophosphorylase; Provisi | 98.81 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.8 | |
| cd04651 | 104 | LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera | 98.79 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.79 | |
| COG0746 | 192 | MobA Molybdopterin-guanine dinucleotide biosynthes | 98.78 | |
| PLN02474 | 469 | UTP--glucose-1-phosphate uridylyltransferase | 98.78 | |
| cd03353 | 193 | LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl | 98.77 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 98.76 | |
| COG1207 | 460 | GlmU N-acetylglucosamine-1-phosphate uridyltransfe | 98.74 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.73 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.72 | |
| cd03351 | 254 | LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr | 98.71 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 98.71 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 98.69 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.68 | |
| KOG1462 | 433 | consensus Translation initiation factor 2B, gamma | 98.68 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.67 | |
| PRK14356 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.67 | |
| cd05787 | 79 | LbH_eIF2B_epsilon eIF-2B epsilon subunit, central | 98.67 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.66 | |
| cd04652 | 81 | LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal | 98.66 | |
| cd03356 | 79 | LbH_G1P_AT_C_like Left-handed parallel beta-Helix | 98.66 | |
| cd04745 | 155 | LbH_paaY_like paaY-like: This group is composed by | 98.64 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.64 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.63 | |
| PLN02296 | 269 | carbonate dehydratase | 98.62 | |
| cd05636 | 163 | LbH_G1P_TT_C_like Putative glucose-1-phosphate thy | 98.62 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.61 | |
| TIGR01852 | 254 | lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac | 98.61 | |
| PRK09451 | 456 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.59 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.59 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.59 | |
| TIGR02287 | 192 | PaaY phenylacetic acid degradation protein PaaY. M | 98.59 | |
| COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 98.56 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.55 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.55 | |
| PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac | 98.54 | |
| TIGR01853 | 324 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam | 98.54 | |
| COG0448 | 393 | GlgC ADP-glucose pyrophosphorylase [Carbohydrate t | 98.53 | |
| PRK05289 | 262 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.53 | |
| PRK14357 | 448 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.49 | |
| PLN02472 | 246 | uncharacterized protein | 98.49 | |
| cd04650 | 154 | LbH_FBP Ferripyochelin Binding Protein (FBP): FBP | 98.48 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.48 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 98.47 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.47 | |
| PLN02296 | 269 | carbonate dehydratase | 98.47 | |
| cd05824 | 80 | LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr | 98.46 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.46 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.45 | |
| cd04646 | 164 | LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact | 98.45 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.45 | |
| PLN02472 | 246 | uncharacterized protein | 98.44 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.44 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 98.44 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.43 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.39 | |
| PRK12461 | 255 | UDP-N-acetylglucosamine acyltransferase; Provision | 98.31 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 98.31 | |
| cd04645 | 153 | LbH_gamma_CA_like Gamma carbonic anhydrase-like: T | 98.29 | |
| TIGR00965 | 269 | dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate | 98.29 | |
| TIGR02091 | 361 | glgC glucose-1-phosphate adenylyltransferase. This | 98.28 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 98.26 | |
| TIGR02092 | 369 | glgD glucose-1-phosphate adenylyltransferase, GlgD | 98.25 | |
| PF01704 | 420 | UDPGP: UTP--glucose-1-phosphate uridylyltransferas | 98.23 | |
| PRK14359 | 430 | glmU bifunctional N-acetylglucosamine-1-phosphate | 98.23 | |
| cd00897 | 300 | UGPase_euk Eukaryotic UGPase catalyses the synthes | 98.23 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 98.23 | |
| TIGR01208 | 353 | rmlA_long glucose-1-phosphate thymidylylransferase | 98.22 | |
| PRK00725 | 425 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.2 | |
| cd03352 | 205 | LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas | 98.19 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 98.19 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.18 | |
| PRK00844 | 407 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.15 | |
| cd03360 | 197 | LbH_AT_putative Putative Acyltransferase (AT), Lef | 98.14 | |
| PRK05293 | 380 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.12 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.1 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 98.09 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 98.09 | |
| PLN02694 | 294 | serine O-acetyltransferase | 98.07 | |
| cd05635 | 101 | LbH_unknown Uncharacterized proteins, Left-handed | 98.05 | |
| cd00710 | 167 | LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo | 98.05 | |
| TIGR03532 | 231 | DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla | 98.05 | |
| cd03350 | 139 | LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d | 98.04 | |
| PRK02862 | 429 | glgC glucose-1-phosphate adenylyltransferase; Prov | 98.03 | |
| TIGR03308 | 204 | phn_thr-fam phosphonate metabolim protein, transfe | 98.01 | |
| cd03359 | 161 | LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact | 98.01 | |
| COG4284 | 472 | UDP-glucose pyrophosphorylase [Carbohydrate transp | 98.0 | |
| KOG1322 | 371 | consensus GDP-mannose pyrophosphorylase/mannose-1- | 98.0 | |
| PLN02241 | 436 | glucose-1-phosphate adenylyltransferase | 97.96 | |
| cd03358 | 119 | LbH_WxcM_N_like WcxM-like, Left-handed parallel be | 97.96 | |
| PRK13627 | 196 | carnitine operon protein CaiE; Provisional | 97.94 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 97.92 | |
| COG1208 | 358 | GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas | 97.91 | |
| cd06424 | 315 | UGGPase UGGPase catalyzes the synthesis of UDP-Glu | 97.9 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 97.9 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 97.9 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 97.89 | |
| COG1083 | 228 | NeuA CMP-N-acetylneuraminic acid synthetase [Cell | 97.88 | |
| PRK11830 | 272 | dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N- | 97.87 | |
| PLN02435 | 493 | probable UDP-N-acetylglucosamine pyrophosphorylase | 97.87 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 97.85 | |
| cd00208 | 78 | LbetaH Left-handed parallel beta-Helix (LbetaH or | 97.83 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 97.78 | |
| PRK00576 | 178 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.74 | |
| COG0663 | 176 | PaaY Carbonic anhydrases/acetyltransferases, isole | 97.73 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 97.7 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 97.66 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 97.65 | |
| PRK11132 | 273 | cysE serine acetyltransferase; Provisional | 97.64 | |
| PLN02357 | 360 | serine acetyltransferase | 97.62 | |
| PLN02357 | 360 | serine acetyltransferase | 97.62 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 97.61 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 97.56 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 97.55 | |
| PF02348 | 217 | CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 | 97.53 | |
| cd04649 | 147 | LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah | 97.51 | |
| COG1861 | 241 | SpsF Spore coat polysaccharide biosynthesis protei | 97.51 | |
| PLN02739 | 355 | serine acetyltransferase | 97.51 | |
| cd04647 | 109 | LbH_MAT_like Maltose O-acyltransferase (MAT)-like: | 97.5 | |
| TIGR01172 | 162 | cysE serine O-acetyltransferase. Cysteine biosynth | 97.42 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 97.4 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 97.36 | |
| PRK10502 | 182 | putative acyl transferase; Provisional | 97.35 | |
| KOG2638 | 498 | consensus UDP-glucose pyrophosphorylase [Carbohydr | 97.34 | |
| PLN02694 | 294 | serine O-acetyltransferase | 97.34 | |
| PRK10191 | 146 | putative acyl transferase; Provisional | 97.33 | |
| PLN02830 | 615 | UDP-sugar pyrophosphorylase | 97.25 | |
| PRK09527 | 203 | lacA galactoside O-acetyltransferase; Reviewed | 97.16 | |
| PLN02739 | 355 | serine acetyltransferase | 97.07 | |
| TIGR03535 | 319 | DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo | 97.05 | |
| TIGR03536 | 341 | DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl | 97.04 | |
| COG2171 | 271 | DapD Tetrahydrodipicolinate N-succinyltransferase | 97.01 | |
| cd05825 | 107 | LbH_wcaF_like wcaF-like: This group is composed of | 96.96 | |
| COG1043 | 260 | LpxA Acyl-[acyl carrier protein] | 96.89 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.83 | |
| cd03354 | 101 | LbH_SAT Serine acetyltransferase (SAT): SAT cataly | 96.8 | |
| KOG1460 | 407 | consensus GDP-mannose pyrophosphorylase [Carbohydr | 96.79 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 96.78 | |
| cd03357 | 169 | LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and | 96.78 | |
| COG1045 | 194 | CysE Serine acetyltransferase [Amino acid transpor | 96.77 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 96.72 | |
| PRK09677 | 192 | putative lipopolysaccharide biosynthesis O-acetyl | 96.71 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 96.49 | |
| PRK10092 | 183 | maltose O-acetyltransferase; Provisional | 96.33 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 96.3 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 96.21 | |
| TIGR02353 | 695 | NRPS_term_dom non-ribosomal peptide synthetase ter | 96.15 | |
| PF00132 | 36 | Hexapep: Bacterial transferase hexapeptide (six re | 96.12 | |
| COG4801 | 277 | Predicted acyltransferase [General function predic | 95.88 | |
| KOG3121 | 184 | consensus Dynactin, subunit p25 [Cytoskeleton] | 95.78 | |
| cd03349 | 145 | LbH_XAT Xenobiotic acyltransferase (XAT): The XAT | 95.59 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 95.37 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 95.19 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 95.13 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 94.12 | |
| PF14602 | 34 | Hexapep_2: Hexapeptide repeat of succinyl-transfer | 94.09 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 93.31 | |
| KOG2388 | 477 | consensus UDP-N-acetylglucosamine pyrophosphorylas | 92.4 | |
| KOG4750 | 269 | consensus Serine O-acetyltransferase [Amino acid t | 91.33 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 90.63 | |
| COG0110 | 190 | WbbJ Acetyltransferase (isoleucine patch superfami | 89.26 | |
| PF07959 | 414 | Fucokinase: L-fucokinase; InterPro: IPR012887 In t | 86.8 | |
| KOG4042 | 190 | consensus Dynactin subunit p27/WS-3, involved in t | 85.71 | |
| PRK13412 | 974 | fkp bifunctional fucokinase/L-fucose-1-P-guanylylt | 81.77 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 81.03 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 80.33 |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=594.15 Aligned_cols=382 Identities=41% Similarity=0.703 Sum_probs=347.4
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCcc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN 169 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~ 169 (507)
.++++-|+|||||.|+||.|||+.||||.+|++|+|+|||++|+||.++||++|+|+|+|++.+|.+||++.| |+.+..
T Consensus 2 ~~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~ 81 (393)
T COG0448 2 MKKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRK 81 (393)
T ss_pred CccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccc
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999888 755422
Q ss_pred cCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEE
Q 010554 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+++.++++.+. +.++.|++|||+|++|.++++++ ...+.+++++|||||+|||.+++++|++++|++|+++.
T Consensus 82 --~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~ 154 (393)
T COG0448 82 --NGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVK 154 (393)
T ss_pred --cCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEE
Confidence 356889887665 34457999999999999999974 45789999999999999999999999999999999999
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC--
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~-- 327 (507)
+++.++++.||++.+|++|+|++|.|||+.... ...+++||+|+|++++|.++|++...
T Consensus 155 ~Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~ 215 (393)
T COG0448 155 EVPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDP 215 (393)
T ss_pred ECChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhccc
Confidence 999999999999999999999999999986210 12489999999999999999987543
Q ss_pred -CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-ceeee
Q 010554 328 -TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIK 405 (507)
Q Consensus 328 -~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~ 405 (507)
+..||+.++||.+++.++++||+|+|||.||||+++|++|||+|++..|.+.+|+++|+|||+....||+++. ++.+.
T Consensus 216 ~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~ 295 (393)
T COG0448 216 NSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVS 295 (393)
T ss_pred CccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEe
Confidence 4689999999999999999999999999999999999999999999778899999999999999999999997 47889
Q ss_pred ceEEcCCcEEccceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCC
Q 010554 406 DAIISHGCFLRECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 481 (507)
Q Consensus 406 ~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~ 481 (507)
+|+|+.||.|.+ .|+|||| +.|+.++.|. |+||++ |.||+||+|++|||++||+|++|++|.+.. +|.++
T Consensus 296 nSLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~---~~IG~~~~l~~aIIDk~v~I~~g~~i~~~~--~~~d~ 369 (393)
T COG0448 296 NSLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD---VEIGEGAVLRRAIIDKNVVIGEGVVIGGDK--PEEDR 369 (393)
T ss_pred eeeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC---cEECCCCEEEEEEeCCCcEeCCCcEEcCCc--chhcc
Confidence 999999999997 9999999 5899999995 999999 999999999999999999999999999864 67777
Q ss_pred CCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 482 PELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 482 ~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.. +++. .|++||++++.++.+.+
T Consensus 370 ~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 370 KR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred cc-cccc-CCcEEEecccEeccccc
Confidence 77 6666 99999999999988765
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-70 Score=526.03 Aligned_cols=350 Identities=41% Similarity=0.667 Sum_probs=308.8
Q ss_pred cCCCCCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCC
Q 010554 87 RRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN 166 (507)
Q Consensus 87 ~~~~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~ 166 (507)
..+++ +.|+|+||.||.||||+|||.++||||+|++|+ |||+|+|++|.++||++|++.++|+++++++|+.+.|
T Consensus 3 ~~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y--- 77 (371)
T KOG1322|consen 3 TRPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY--- 77 (371)
T ss_pred ccccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh---
Confidence 34455 899999999999999999999999999999987 9999999999999999999999999999999999988
Q ss_pred CcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEE
Q 010554 167 GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI 246 (507)
Q Consensus 167 ~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl 246 (507)
+.+++ |+++++.|++ +.|++||+++.|+++|.+++ .+|+|++||++|+++|++|+++|+++++++|+
T Consensus 78 ~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI 144 (371)
T KOG1322|consen 78 GKELG---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEITI 144 (371)
T ss_pred hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceEE
Confidence 33565 8999887764 57999999999999998862 49999999999999999999999999999999
Q ss_pred EEEEcCCCCCccceEEEECC-CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhh
Q 010554 247 SCAAVGESRASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~-~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~ 325 (507)
+++++++ +++||+|++|+ +|||.+|.|||+... ++-+++|+|+|++++|.+++ .
T Consensus 145 ~~t~vde--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~ 199 (371)
T KOG1322|consen 145 VVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--L 199 (371)
T ss_pred EEEeccC--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--h
Confidence 9999998 89999999998 899999999998432 24567999999999999887 4
Q ss_pred CCCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-----
Q 010554 326 YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID----- 400 (507)
Q Consensus 326 ~~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~----- 400 (507)
+|+. |.+|++|.+++++++++|.++|||+|||+|+||+.+ +.||+.+.+.++.+++.||+.+.
T Consensus 200 ~ptS--iekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvlv 267 (371)
T KOG1322|consen 200 RPTS--IEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVLV 267 (371)
T ss_pred cccc--hhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEee
Confidence 5554 899999999999999999999999999999999999 44666777888888888886653
Q ss_pred --------ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCC
Q 010554 401 --------NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 467 (507)
Q Consensus 401 --------~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~ 467 (507)
+|.|. ||+||++|+|+ +..+++|.+ ++|+++++|+|.+..+. +.||.++ +|++||+||+|
T Consensus 268 d~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~--~~IG~~~-----~id~~a~lG~n 340 (371)
T KOG1322|consen 268 DSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWN--VPIGIWA-----RIDKNAVLGKN 340 (371)
T ss_pred ccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhcccc--ccccCce-----EEecccEeccc
Confidence 47776 48888899998 567888988 68999999987666665 5677765 88999999999
Q ss_pred cEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeC
Q 010554 468 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 502 (507)
Q Consensus 468 ~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~ 502 (507)
++|.|.+.+.++ +++++|+|+++|.++++|.
T Consensus 341 V~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 341 VIVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred eEEecccccccc----eeEEeccceeecccccccC
Confidence 999999988888 7999999999999999874
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=543.34 Aligned_cols=414 Identities=73% Similarity=1.237 Sum_probs=361.0
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~ 170 (507)
|++|+|||||||+||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| |+....+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 678999999999999999999999999999999889999999999999999999999999999999998666 4433333
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
..+.++++...|.. ..+.|++|||+||+++++++++....+.++|||++||+++++|+.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 33346666554432 1234679999999999988864221225899999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
++.+++++||++.+|++++|.+|.|||..+....+++|+++|++++.+....++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 88666789999999989999999999977666678999999998875444446799999999999999888876655555
Q ss_pred chhhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceecceeeeceEE
Q 010554 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAII 409 (507)
Q Consensus 331 d~~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~I~~siI 409 (507)
+|..++++.++++ .+|++|.++|||.|||+|++|++||+++++..+...++++.+++++.....||+.+.++.|.+|+|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7889999999987 689999999999999999999999999998777666778888999998888999998899999999
Q ss_pred cCCcEEccceEeeeeE---EeeccCceEe-eeecC----------------CCcceeeCCCcEEeeeEeCCCCEECCCcE
Q 010554 410 SHGCFLRECTVEHSIV---DYYQTESEIA-SLLAE----------------GKVPIGVGRNTKIRNCIIDKNVKIGKDVV 469 (507)
Q Consensus 410 g~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~----------------g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~ 469 (507)
+++|+|++|.|++|+| +.+|.+++|. |+++. |.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 9999999888999998 5889999994 88876 33345899999999999999999999999
Q ss_pred EecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 470 IVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 470 i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
|.+++++.+..+.++++.+.+|+++||+++.|.+|++|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999999999999999999986
|
|
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=526.15 Aligned_cols=408 Identities=57% Similarity=1.000 Sum_probs=351.0
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|+.. .+.
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~--~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD--GFS 78 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc--ccC
Confidence 458999999999999999999999999999999989999999999999999999999999999999997554211 122
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.+.+.++...|.. ....|++|||+||+++++++++ ...++|+|++||+++++|+.++++.|++.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 2335555444422 1124558999999999998853 1236899999999999999999999999999999999887
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCc
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d 331 (507)
+.+++..||++.+|++|+|..|.|||.......+.+++++|..++.......+++++|+|+|++++|..++++. +...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhh
Confidence 65557789999999889999999999866566788888888777765555567999999999999998777653 23456
Q ss_pred hhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh-ccCCCccccCCCCCcccCCCcCCCceecceeeeceEEc
Q 010554 332 FGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT-KESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIIS 410 (507)
Q Consensus 332 ~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll-~~~~~~~~~~~~~~i~~~~~~~~p~~i~~~~I~~siIg 410 (507)
+..+++|.++++.++++|.++|||.|+||+++|++||++++ ...+...++.+.+++++.+.+.||+.+.++++++|+||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77899999999999999999999999999999999999998 55566667788899999999999999988999999999
Q ss_pred CCcEEccceEeeeeE---EeeccCceE-eeeecCC----------------CcceeeCCCcEEeeeEeCCCCEECCCcEE
Q 010554 411 HGCFLRECTVEHSIV---DYYQTESEI-ASLLAEG----------------KVPIGVGRNTKIRNCIIDKNVKIGKDVVI 470 (507)
Q Consensus 411 ~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g----------------~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i 470 (507)
+||.|.++.|.+|+| +.||.+++| +|+++.+ .+++.||+||+|++|||+++|+||++++|
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 999997789999999 589999999 4999862 11288999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 471 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 471 ~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.+++.+.++++..+||++..|+|+|+++++|++||+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 393 VNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999999999986
|
|
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-58 Score=481.07 Aligned_cols=381 Identities=36% Similarity=0.636 Sum_probs=312.7
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| ... ..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~-~~~-~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTW-RLS-GL 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCc-Ccc-cc
Confidence 3789999999999999999999999999999999989999999999999999999999999999999997543 211 11
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
....+......+. .+..|++|||+||+.+++++.+ ...++|+|++||++++.|+.+++++|+++++++|+++..
T Consensus 80 ~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 1112222111111 1235678999999999999863 112569999999999999999999999999999999987
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~ 327 (507)
++.+.++.||++.+|++|+|..|.|||..+... .. ...++++++|+|+|++++|.+++++.. .
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGL--PD------------DPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCcccc--cC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 655557789999999889999999999643210 00 012368999999999999877776422 1
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEe------------ccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCC
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIF------------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLP 395 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~------------~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~ 395 (507)
...++.+++++.+++++++++|.+ +|||.|||++++|++||+++++..+...++++.+++++.....+
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 345677899999999999999977 59999999999999999999987777777788889999888888
Q ss_pred Cceecc-e----eeeceEEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECC
Q 010554 396 PTKIDN-C----RIKDAIISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 466 (507)
Q Consensus 396 p~~i~~-~----~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~ 466 (507)
|+.+.. + .+.+++||+||.|++++|++|+| +.|+.+++| +|+|+++ +.||++|+|.+|||+++++||+
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~---~~i~~~~~i~~~ii~~~~~i~~ 376 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG---VRIGRGAVVRRAILDKNVVVPP 376 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC---CEECCCCEEEeeEECCCCEECC
Confidence 887742 2 57899999999998789999999 588999999 5999999 8999999999999999999999
Q ss_pred CcEEecCCCCccCCCCCCCeEEc-CCeEEEcCCCEe
Q 010554 467 DVVIVNKDDVQEADRPELGFYIR-SGITIIMEKATI 501 (507)
Q Consensus 467 ~~~i~~~~~~~e~~~~~~~~~i~-~g~~vig~~~~i 501 (507)
+++|.+. . +.+ .++|.+. +|+++|++|++|
T Consensus 377 ~~~i~~~--~-~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 377 GATIGVD--L-EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CCEECCC--c-ccc--ccceEeccceEEEeCCCCCC
Confidence 9999873 1 333 4578885 899999999865
|
|
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-57 Score=469.93 Aligned_cols=369 Identities=38% Similarity=0.625 Sum_probs=305.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~ 170 (507)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.. |+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 578999999999999999999999999999999988999999999999999999999999999999986322 332111
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
...++++...+. +..++|++|||+||+++++++.+ ...++|||++||++++.|+.++++.|+++++++|+++..
T Consensus 80 -~~~~~i~~~~~~--~~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSE--SEGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCccc--CCCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 122555522221 12235789999999999998852 123689999999999999999999999999999998877
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~ 327 (507)
.+.+++..||++.+|++|+|.+|.|||..+. .+++++|+|+|++++|..+++... .
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 7655578899999998899999999986432 368899999999999987776532 2
Q ss_pred CCCchhhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-ceeee
Q 010554 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIK 405 (507)
Q Consensus 328 ~~~d~~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~ 405 (507)
...+|.+++++.++++ .++++|.+++||.||||+++|++||++++...+...++++.+.+++.+.+.+|++|+ +++|.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2356778999999876 689999999999999999999999999998777667788888998888899999997 69999
Q ss_pred ceEEcCCcEEccceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCC
Q 010554 406 DAIISHGCFLRECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADR 481 (507)
Q Consensus 406 ~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~ 481 (507)
+|+||+||.|+ +.+.+|+| +.||.++.|. |+|+++ +.||++|+|.+|+|+++++||+++.|.++..
T Consensus 293 ~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~---~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~------ 362 (380)
T PRK05293 293 NSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG---AKIGENVVIERAIIGENAVIGDGVIIGGGKE------ 362 (380)
T ss_pred cCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC---CEECCCeEEeEEEECCCCEECCCCEEcCCCc------
Confidence 99999999997 46788988 4677888774 888888 7888888888888888888888888876432
Q ss_pred CCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 482 PELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 482 ~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+..+||++++|+++++|
T Consensus 363 ---------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 363 ---------VITVIGENEVIGVGTVI 379 (380)
T ss_pred ---------eeEEEeCCCCCCCCcEe
Confidence 24789999999999986
|
|
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=471.28 Aligned_cols=385 Identities=36% Similarity=0.612 Sum_probs=315.1
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.+++++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.| +.....
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~~ 90 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGW-SFFREE 90 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhh-cccccC
Confidence 3478999999999999999999999999999999955999999999999999999999999999999997543 210000
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
....+.++...+.. ..++|++|||+|++++++++++ ...++|+|++||++++.||.++++.|+++++++|+++.+
T Consensus 91 ~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~ 165 (425)
T PRK00725 91 LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165 (425)
T ss_pred CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEe
Confidence 11235555443321 1235678999999999999863 124689999999999999999999999999999999988
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~ 327 (507)
++.+++..||++.+|++++|.+|.|||..+.. +.. ....+++++|+|+|++++|..+|++.. .
T Consensus 166 ~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~~------------~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~ 231 (425)
T PRK00725 166 VPREEASAFGVMAVDENDRITAFVEKPANPPA--MPG------------DPDKSLASMGIYVFNADYLYELLEEDAEDPN 231 (425)
T ss_pred cchhhcccceEEEECCCCCEEEEEECCCCccc--ccc------------CccceEEEeeEEEEeHHHHHHHHHHhhcCCC
Confidence 76556788999999988999999999864320 000 012368999999999999877776532 2
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEec-----------cEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCC
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIFR-----------DYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPP 396 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~~-----------gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p 396 (507)
...+|.+++++.+++++++++|.++ +||.|||||++|++||+++++..+...+++..+++++.....||
T Consensus 232 ~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 232 SSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPP 311 (425)
T ss_pred ccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCC
Confidence 3457888999999999999999996 59999999999999999999877777777888899998888888
Q ss_pred ceec------ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECC
Q 010554 397 TKID------NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 466 (507)
Q Consensus 397 ~~i~------~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~ 466 (507)
+.+- .+.+.+|+||+||+|++|.|++|+| +.||.+++|. |+|+++ |.||++|+|.+||||++|+|++
T Consensus 312 ~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~---~~I~~~~~i~~~ii~~~~~i~~ 388 (425)
T PRK00725 312 AKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD---VNVGRSCRLRRCVIDRGCVIPE 388 (425)
T ss_pred CeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC---CEECCCCEEeeEEECCCCEECC
Confidence 8763 2467899999999998889999999 5889999994 999999 8999999999999999999999
Q ss_pred CcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeC
Q 010554 467 DVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIE 502 (507)
Q Consensus 467 ~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~ 502 (507)
+++|+.. ..++.++ ....+.|+++|++++...
T Consensus 389 ~~~i~~~-~~~~~~~---~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 389 GMVIGED-PEEDAKR---FRRSEEGIVLVTREMLDK 420 (425)
T ss_pred CCEECCC-CCCCCce---eEecCccEEEECCCcccc
Confidence 9999754 3333333 344578999999997653
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=437.11 Aligned_cols=345 Identities=24% Similarity=0.409 Sum_probs=255.6
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCch-HHHHHHHhcc-cCCCccc
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTY-FGNGTNF 170 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~-~l~~~l~~~~-~~~~~~~ 170 (507)
++|+|||||||+||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++|+.+ ++.+|+.+.. |+.....
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~ 80 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKR 80 (369)
T ss_pred CcEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCccccc
Confidence 4689999999999999999999999999999998899999999999999999999999987 9999996432 3322111
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
. +...++ .|.. +.+..|++++++.+++++++ ...++|||++||+++++||.+++++|+++++++|+++.+
T Consensus 81 ~-~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 150 (369)
T TIGR02092 81 D-GLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKK 150 (369)
T ss_pred C-cEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEe
Confidence 1 111112 1211 11224777789888888842 123789999999999999999999999999999999988
Q ss_pred cCCCCCccc-eEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC-
Q 010554 251 VGESRASDY-GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (507)
Q Consensus 251 ~~~~~~~~~-g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~- 328 (507)
++...+..| +++..|++|+|..+.+++... ....+++|+|+|++++|.++++...+.
T Consensus 151 v~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 209 (369)
T TIGR02092 151 VKPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRG 209 (369)
T ss_pred cCHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcC
Confidence 764345667 456677778888874433211 124578999999999887777654332
Q ss_pred CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCcccc-CCCCCcccCCCcCCCceec-ceeeec
Q 010554 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFY-DPKTPFYTSPRFLPPTKID-NCRIKD 406 (507)
Q Consensus 329 ~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~-~~~~~i~~~~~~~~p~~i~-~~~I~~ 406 (507)
..++..++++.++++.++++|.+++||.||||+++|++||+++++++.....+ ....++++.....+|++++ +++|.+
T Consensus 210 ~~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~ 289 (369)
T TIGR02092 210 KLTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVEN 289 (369)
T ss_pred ccccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEE
Confidence 33456789999888889999999999999999999999999999876443333 2334666666667999997 699999
Q ss_pred eEEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 407 AIISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 407 siIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|+||+||.|+ +.|++|+| +.+|.+++| +|+++++ +.|+++++|.+||||++++||+++.+.+
T Consensus 290 ~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~---~~I~~~~~i~~~ii~~~~~v~~~~~~~~ 355 (369)
T TIGR02092 290 SLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR---TVIGEGAHLENVIIDKDVVIEPNVKIAG 355 (369)
T ss_pred eEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC---CEECCCCEEEEEEECCCCEECCCCEeCC
Confidence 9999999997 67899988 244555555 2555555 4555555555555555555555555543
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=424.87 Aligned_cols=354 Identities=46% Similarity=0.791 Sum_probs=283.9
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.||||+|||.++||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| ..... ....++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~~~~~-~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGW-DFDGF-IDGFVT 78 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhcc-CccCc-cCCCEE
Confidence 6999999999999999999999999999978999999999999999999999999999999997543 21110 012355
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++...+. +..++|++||+++++.+.+++++ ...++|+|++||++++.++.++++.|+++++++|+++.+.+.+.+
T Consensus 79 ~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~ 153 (361)
T TIGR02091 79 LLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEA 153 (361)
T ss_pred EeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhc
Confidence 5543332 12345678999999999988853 124689999999999999999999999988889999888765557
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---CCCCchh
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---PTSNDFG 333 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~~~~d~~ 333 (507)
..||++.+|++++|.+|.|||..+... .+. ...+++++|+|+|++++|..+++... +...+|.
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~~~--------~~~------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~ 219 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPPSI--------PGM------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDFG 219 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCcccc--------ccc------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccH
Confidence 789999999889999999998543210 000 01248999999999999877776532 2234677
Q ss_pred hhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCC-cCCCceecc-eeeeceEEcC
Q 010554 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPR-FLPPTKIDN-CRIKDAIISH 411 (507)
Q Consensus 334 ~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~-~~~p~~i~~-~~I~~siIg~ 411 (507)
+++++.+++++++++|.+++||.||||+++|++|+++++++.+....+...+++++... +.|++.++. +.|.+|+||+
T Consensus 220 ~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~ 299 (361)
T TIGR02091 220 KDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSE 299 (361)
T ss_pred HHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECC
Confidence 89999999999999999999999999999999999999987654444455566655443 345566764 6889999999
Q ss_pred CcEEccceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCC
Q 010554 412 GCFLRECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 491 (507)
Q Consensus 412 gc~I~~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g 491 (507)
||.|++++|.+|+| ++| |.||++|+|.+|+|++++.||.++.|.+
T Consensus 300 ~~~I~~~~v~~s~i-------------~~~---~~I~~~~~i~~sii~~~~~v~~~~~l~~------------------- 344 (361)
T TIGR02091 300 GCIISGATVSHSVL-------------GIR---VRIGSGSTVEDSVIMGDVGIGRGAVIRN------------------- 344 (361)
T ss_pred CCEECCCEEEccEE-------------CCC---CEECCCCEEeeeEEeCCCEECCCCEEee-------------------
Confidence 99999768888877 888 8999999999999999999999999975
Q ss_pred eEEEcCCCEeCCCccC
Q 010554 492 ITIIMEKATIEDGMVI 507 (507)
Q Consensus 492 ~~vig~~~~i~~gt~i 507 (507)
++||++++|+++++|
T Consensus 345 -~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 345 -AIIDKNVRIGEGVVI 359 (361)
T ss_pred -eEECCCCEECCCCEe
Confidence 678888888888765
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=417.18 Aligned_cols=343 Identities=25% Similarity=0.433 Sum_probs=268.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.|+|||||||+||||+|||.++||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+...+ .++ .
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~-----~~~-~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE-----GLG-V 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc-----ccC-C
Confidence 48999999999999999999999999999999 9999999999999999999999999999998886432 222 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.++++.... ++|||++|+++.+++. .++|++++||++++.|+.+++++|+++.+.+|+....+.+
T Consensus 74 ~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~ 138 (358)
T COG1208 74 RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLD 138 (358)
T ss_pred ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCC
Confidence 244443222 3799999999998885 2899999999999999999999999998889998888877
Q ss_pred CCCccceEEEECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCch
Q 010554 254 SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (507)
Q Consensus 254 ~~~~~~g~v~id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~ 332 (507)
+ +.||++..+++ ++|.+|.|||.... ..++++++|+|+|++++|. +++. ....+|
T Consensus 139 ~--~~~Gvv~~~~~~~~v~~f~ekp~~~~-------------------~~~~~in~Giyi~~~~v~~-~i~~--~~~~~~ 194 (358)
T COG1208 139 P--SEFGVVETDDGDGRVVEFREKPGPEE-------------------PPSNLINAGIYIFDPEVFD-YIEK--GERFDF 194 (358)
T ss_pred C--CcCceEEecCCCceEEEEEecCCCCC-------------------CCCceEEeEEEEECHHHhh-hccc--CCcccc
Confidence 4 78999998844 59999999995311 1347999999999999997 3232 235567
Q ss_pred hhhhHHhhhhcCc-EEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCC---CcccCCCcCCCceec-ceeee-c
Q 010554 333 GSEIIPAAIMEHD-VQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKT---PFYTSPRFLPPTKID-NCRIK-D 406 (507)
Q Consensus 333 ~~dil~~li~~~~-V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~---~i~~~~~~~~p~~i~-~~~I~-~ 406 (507)
..+++|.+++++. +++|.++|||.|||+|++|.+|+..+++............ .+.. ..+.+|++++ +|+|. +
T Consensus 195 ~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~ 273 (358)
T COG1208 195 EEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPG 273 (358)
T ss_pred hhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCC
Confidence 7789999999987 9999999999999999999999999986443221000000 0122 4556777766 35554 2
Q ss_pred ------eEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 407 ------AIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 407 ------siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++||+||.|+ ++.|.+ |+++++ +.||++++|.+||||.||+||++. + +++
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~-------------Sii~~~---~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d- 330 (358)
T COG1208 274 ALIGPYTVIGEGVTIGNGVEIKN-------------SIIMDN---VVIGHGSYIGDSIIGENCKIGASL-I-----IGD- 330 (358)
T ss_pred CEECCCcEECCCCEECCCcEEEe-------------eEEEcC---CEECCCCEEeeeEEcCCcEECCce-e-----ecc-
Confidence 4444455554 234444 555999 899999999999999999999922 2 677
Q ss_pred CCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 480 DRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 480 ~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.....+..+..| +++++++.+++++++
T Consensus 331 ~~~g~~~~i~~g-~~~~~~~~~~~~~~~ 357 (358)
T COG1208 331 VVIGINSEILPG-VVVGPGSVVESGEIE 357 (358)
T ss_pred eEecCceEEcCc-eEeCCCccccCcccc
Confidence 777777788888 778888888877653
|
|
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=386.74 Aligned_cols=344 Identities=19% Similarity=0.296 Sum_probs=253.2
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEecc-CchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|++++ +.+++.+|+.+. ..|+. .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~-----~~~~~-~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG-----ERFGA-K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc-----cccCc-e
Confidence 589999999999999999999999999999 999999999999999999999999 889999998631 23331 1
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
+.++. +. +.+||+++++.++.+++ .++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 74 ~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~- 137 (353)
T TIGR01208 74 ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD- 137 (353)
T ss_pred EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 23322 21 23699999999998874 3689999999999999999999999999999999988765
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCch
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~ 332 (507)
+..||++..+++++|.+|.|||..+. ++++++|+|+|++.++. .+++..+. ...+
T Consensus 138 -~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~ 194 (353)
T TIGR01208 138 -PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELE 194 (353)
T ss_pred -hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEE
Confidence 56799988877789999999987432 36789999999997664 55543331 2344
Q ss_pred hhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-ceeeeceEEc
Q 010554 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (507)
Q Consensus 333 ~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~~siIg 410 (507)
..++++.++++ .+|++|.++|||.|||||++|++||+.++++... .+. .+.+.+.+.+|++++ ++.|.+++|+
T Consensus 195 l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~~----~i~~~~~i~~~~~i~~~~~i~~~~i~ 269 (353)
T TIGR01208 195 ITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EVQ----GVDDESKIRGRVVVGEGAKIVNSVIR 269 (353)
T ss_pred HHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-ccC----CcCCCCEEcCCEEECCCCEEeCCEEE
Confidence 67899999876 5799999999999999999999999999975321 111 245566677888887 5888888887
Q ss_pred CCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCc-EEecCCCCccCCCCCCCeEE
Q 010554 411 HGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV-VIVNKDDVQEADRPELGFYI 488 (507)
Q Consensus 411 ~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~-~i~~~~~~~e~~~~~~~~~i 488 (507)
.+|.|+ +|.|.+|+|. . .+.|++| +.|+ +|.|++|+|+++|+|+.++ .+.+ ..+++..++..+..+
T Consensus 270 ~~~~Ig~~~~I~~~~i~---~----~~~Ig~~---~~i~-~~~i~~s~i~~~~~i~~~~~~~~~-~ii~~~~~i~~~~~~ 337 (353)
T TIGR01208 270 GPAVIGEDCIIENSYIG---P----YTSIGEG---VVIR-DAEVEHSIVLDESVIEGVQARIVD-SVIGKKVRIKGNRRR 337 (353)
T ss_pred CCcEECCCCEEcCcEEC---C----CCEECCC---CEEe-eeEEEeeEEcCCCEEcCCcceeec-CEEcCCCEECCCccc
Confidence 778887 6777777651 0 1222333 3333 3444456666666665552 4443 234444444444333
Q ss_pred cC-CeEEEcCCCEeC
Q 010554 489 RS-GITIIMEKATIE 502 (507)
Q Consensus 489 ~~-g~~vig~~~~i~ 502 (507)
.+ ...++|++++|+
T Consensus 338 ~~~~~~~~g~~~~~~ 352 (353)
T TIGR01208 338 PGDLRLTIGDYSQVE 352 (353)
T ss_pred ccccceEEcCCceec
Confidence 32 124567666654
|
Alternate name: dTDP-D-glucose synthase |
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=358.40 Aligned_cols=377 Identities=17% Similarity=0.302 Sum_probs=263.9
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
...+|||+||.-+-+||+|+|..+|++|||++|. |||+|+|++|..+|+.+|+|+++.+..++++|+.+.-|.....|
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~~~~- 99 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLPMSF- 99 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhccccccccc-
Confidence 4679999999999999999999999999999999 99999999999999999999999999999999986445443222
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHH-----cCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~-----~~a~~tl 246 (507)
.+..+.... ....|||+|... .++...+||++++||++.+++|.+++++||+ +++.|||
T Consensus 100 --~v~ti~s~~---------~~S~GDamR~id-----~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 100 --IVVTICSGE---------SRSVGDAMRDID-----EKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred --eEEEEcCCC---------cCcHHHHHHHHH-----hcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 233332111 258999999873 2344568999999999999999999999974 4688999
Q ss_pred EEEEcCCCCCccceEEEEC-CCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHh-
Q 010554 247 SCAAVGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW- 324 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id-~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~- 324 (507)
++.+.......+--++.+| .+.|+++|.+-.. .....+++.++|..++.. ....++.+++|.+|+++++..|-++
T Consensus 164 v~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~~~v-~vr~DL~dc~IdIcS~~V~sLF~dNF 240 (673)
T KOG1461|consen 164 VFKESSTRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSNDEV-EVRNDLLDCQIDICSPEVLSLFTDNF 240 (673)
T ss_pred EEeccccccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCCCcE-EEEccCCCceeeEecHhHHHHhhhcc
Confidence 9987642111233455666 4789999976211 223567888888776554 3467999999999999999766554
Q ss_pred hCCCCCchhhhhHHhhhhcCcEEEEEecc--EEEecCCHHHHHHHHHHhhccCC-----CccccCCCCCc-ccCCC-c-C
Q 010554 325 RYPTSNDFGSEIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANMALTKESP-----AFHFYDPKTPF-YTSPR-F-L 394 (507)
Q Consensus 325 ~~~~~~d~~~dil~~li~~~~V~~~~~~g--yw~dIgt~~~y~~An~~ll~~~~-----~~~~~~~~~~i-~~~~~-~-~ 394 (507)
.|++..||.+++|-.-+-..+|+++..+. |..++.++++|...+.+++++|. ...+.+. .++ +.+.. + .
T Consensus 241 Dyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~-q~~~~~r~~IYk~ 319 (673)
T KOG1461|consen 241 DYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGN-QTFSLERRNIYKS 319 (673)
T ss_pred cceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCC-ceeeecccccccC
Confidence 44567889999988888889999999875 99999999999999999999982 2222221 111 11100 0 1
Q ss_pred CCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCC
Q 010554 395 PPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 467 (507)
Q Consensus 395 ~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~ 467 (507)
+.+.+. .|.+. +++||.|+.|+ ++.|.|||| +.||.++.| +|+||.| |+||+||+|++|||+++++|++|
T Consensus 320 ~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~---v~Igdnc~I~~aii~d~v~i~~~ 396 (673)
T KOG1461|consen 320 PDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN---VTIGDNCRIDHAIICDDVKIGEG 396 (673)
T ss_pred ccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC---cEECCCceEeeeEeecCcEeCCC
Confidence 122222 24443 45666666666 556666666 133333333 1334666 66666666666666666666666
Q ss_pred cEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 468 VVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 468 ~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
|++..++++ ..| +|+|+|-+++.+++
T Consensus 397 ~~l~~g~vl------------~~~-VVv~~~~~l~~ns~ 422 (673)
T KOG1461|consen 397 AILKPGSVL------------GFG-VVVGRNFVLPKNSK 422 (673)
T ss_pred cccCCCcEE------------eee-eEeCCCcccccccc
Confidence 666554332 223 55566666665544
|
|
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=332.19 Aligned_cols=352 Identities=22% Similarity=0.348 Sum_probs=267.9
Q ss_pred ceEEEEEcCC--CCCcccCCccCCCccceeecCcchhhHHHHHHHHh-cCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 94 NVAAIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 94 ~~~aVILAaG--~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.++||||-|| +||||+||+.+.||||+||+|+ |||.|.++.|.+ .|..+|+++.-|..+.+.+++.+.- ..|
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~----~e~ 76 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ----QEF 76 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH----hhc
Confidence 4789999999 6999999999999999999999 999999999998 5999999999998888888875332 123
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
. ..|+++... .++|||++|..+++.+-. ...+.|+|+++|..+++.+.+|++.|+..++.+||+.+.
T Consensus 77 ~-~pvrYL~E~---------~plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tk 143 (407)
T KOG1460|consen 77 K-VPVRYLRED---------NPLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTK 143 (407)
T ss_pred c-cchhhhccC---------CCCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEE
Confidence 2 125555433 257999999999887742 446789999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEEC-CCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHH---hh-
Q 010554 251 VGESRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR---WR- 325 (507)
Q Consensus 251 ~~~~~~~~~g~v~id-~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~---~~- 325 (507)
+..+++++||-+..| .+|+|+++.|||...- ++++++|+|+|++++|..+-+ +.
T Consensus 144 vs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~ 202 (407)
T KOG1460|consen 144 VSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQ 202 (407)
T ss_pred ecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHH
Confidence 998889999998888 6899999999998652 489999999999999875422 11
Q ss_pred ------------CCCCCch---hhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCcc---cc-CCCC-
Q 010554 326 ------------YPTSNDF---GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFH---FY-DPKT- 385 (507)
Q Consensus 326 ------------~~~~~d~---~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~---~~-~~~~- 385 (507)
.+...|| .+|+++.++.++++|+|...++|..|.|+-+-+.||+.+|++..... +- .+..
T Consensus 203 ~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~ 282 (407)
T KOG1460|consen 203 DLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQ 282 (407)
T ss_pred hhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCC
Confidence 0111333 36899999999999999999999999999999999999987532110 10 1111
Q ss_pred -CcccCCCcCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCC
Q 010554 386 -PFYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 461 (507)
Q Consensus 386 -~i~~~~~~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~n 461 (507)
.|...+.+.|.+++. .++|. |+-||++++|+ +.++.+||| .++ +.|.+|+.+-+||||+.
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sII-------------l~d---~ei~enavVl~sIigw~ 346 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESII-------------LDD---AEIEENAVVLHSIIGWK 346 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeee-------------ccC---cEeeccceEEeeeeccc
Confidence 122223233334444 25554 56666666666 456666665 898 89999999999999999
Q ss_pred CEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 462 VKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 462 a~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.||+++.++.........-+.- .++|.|.++.+++.++
T Consensus 347 s~iGrWaRVe~~pv~~s~~~~~~------a~Tilga~v~v~dev~ 385 (407)
T KOG1460|consen 347 SSIGRWARVEGIPVEPSPNLPFA------ALTILGADVSVEDEVI 385 (407)
T ss_pred ccccceeeecccccccCCCCCcc------eeEEecccceecceeE
Confidence 99999999986533222222211 3466667666666554
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=358.94 Aligned_cols=329 Identities=22% Similarity=0.295 Sum_probs=234.1
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|++++|||||||.|+||++ .+||||+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+. .
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~--- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----G--- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----C---
Confidence 5678999999999999984 789999999999 999999999999999999999999999898888521 0
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+.++. +. .++||+++++.+++++++ ..++|++++||+ +...++.++++.|++.++++++++.
T Consensus 69 --~i~~~~--~~-------~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 69 --DVSFAL--QE-------EQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred --ceEEEe--cC-------CCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 134432 21 136999999999998852 246899999998 5578899999999988888888887
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC--
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~-- 327 (507)
+..+ +..||.+.+|++|+|..+.|||...... ..++++++|+|+|++++|.++++...+
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 7655 4579999998889999999987421100 013688999999999987676765332
Q ss_pred -CCCchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccCC------CccccCCCC-CcccCCCcCCC
Q 010554 328 -TSNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESP------AFHFYDPKT-PFYTSPRFLPP 396 (507)
Q Consensus 328 -~~~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~~------~~~~~~~~~-~i~~~~~~~~p 396 (507)
....+.+++++.++++ .++++|.+++| |.|+|||++|++|++.++.... ...++++.. .+...+.+.+.
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 1335578999999987 47999999988 9999999999999886654321 111233322 12233333444
Q ss_pred ceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCc
Q 010554 397 TKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDV 468 (507)
Q Consensus 397 ~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~ 468 (507)
+.|+ +|.|. +++||++|.|+ ++.|.+|+| ..++.++.+. ++++++ +.||.+++|+ ++.|+++++||+++
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~---~~ig~~~~i~~~~~i~~~~~ig~~~ 351 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDD---VAIGPMAHLRPGTELSAHVKIGNFV 351 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCC---CEECCCCEECCCCEeCCCCEECCCc
Confidence 4444 35554 56777777776 567777666 2344444442 444544 4455555444 34444444444444
Q ss_pred E
Q 010554 469 V 469 (507)
Q Consensus 469 ~ 469 (507)
.
T Consensus 352 ~ 352 (459)
T PRK14355 352 E 352 (459)
T ss_pred c
Confidence 3
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=359.42 Aligned_cols=368 Identities=17% Similarity=0.199 Sum_probs=260.4
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|.++.|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+.+++... ..
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~--~~----- 70 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAEL--AP----- 70 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhcc--CC-----
Confidence 5678999999999999997 689999999999 999999999999999999999999888888777421 00
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+.++. + ++..||+++++.++.++.+ ...++|+|++||+ +...++.++++.|++.++++++++.
T Consensus 71 --~~~~~~--~-------~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~ 136 (482)
T PRK14352 71 --EVDIAV--Q-------DEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTT 136 (482)
T ss_pred --ccEEEe--C-------CCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 123332 2 1236999999999988742 1246799999998 3457899999999988888888877
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC-
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~- 328 (507)
+.++ +..||.+..|++|+|.+|.|||.....+ ....++++|+|+|++++|..+++...+.
T Consensus 137 ~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~ 197 (482)
T PRK14352 137 TLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSDN 197 (482)
T ss_pred ecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCccc
Confidence 7665 5679998888889999999998743210 0125789999999999998777654332
Q ss_pred --CCchhhhhHHhhhhcC-cEEEEEeccEEEecCCHHHH------HHHHHHhhccCC--CccccC-------CCCCcccC
Q 010554 329 --SNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSF------YEANMALTKESP--AFHFYD-------PKTPFYTS 390 (507)
Q Consensus 329 --~~d~~~dil~~li~~~-~V~~~~~~gyw~dIgt~~~y------~~An~~ll~~~~--~~~~~~-------~~~~i~~~ 390 (507)
...++.|+++.+++++ +|++|.+++||.|+|+++.| ..+|+.++..+. ....++ +...+...
T Consensus 198 ~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~ 277 (482)
T PRK14352 198 AQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRD 277 (482)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCC
Confidence 3455789999999874 89999999999999999888 566665554321 111122 22222222
Q ss_pred CCcC------------CCceec-ceeeeceEEcCCcEEccceEeeeeE---Eeec------------------cCceEe-
Q 010554 391 PRFL------------PPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQ------------------TESEIA- 435 (507)
Q Consensus 391 ~~~~------------~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg------------------~~~~i~- 435 (507)
+++. +.++|+ +|.|.+|+||++|.|+++.+.+++| ..+| .++++.
T Consensus 278 ~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~ 357 (482)
T PRK14352 278 VVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKN 357 (482)
T ss_pred cEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcc
Confidence 2222 222232 3555566666666665444555555 1222 223332
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
++++++ +.|+..+.+.+|+||++|.||.++++.+. ..+++..+...+..|.+| +.||+++.|++|++|
T Consensus 358 ~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~-~~Ig~~~~igags~v 432 (482)
T PRK14352 358 ATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAP-VTVGDGAYTGAGTVI 432 (482)
T ss_pred cEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCC-CEECCCcEECCCCEE
Confidence 445555 55666666778888899999999888753 456666666666666666 678888888888764
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=355.80 Aligned_cols=233 Identities=20% Similarity=0.267 Sum_probs=183.6
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
.+|+|||||||.|+||+| .+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+.+.+|+.. .+
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~~- 72 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------SG- 72 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------CC-
Confidence 469999999999999997 589999999999 99999999999999999999999998888877741 11
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
+.++. +. +++||+++++.++.+++. ..++|+|++||+ +...++.++++.|+++++++|+++.+
T Consensus 73 --i~~v~--~~-------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~ 137 (481)
T PRK14358 73 --VAFAR--QE-------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGE 137 (481)
T ss_pred --cEEec--CC-------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEE
Confidence 44443 21 246999999999887741 235799999998 55778999999999999999999888
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC---C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY---P 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~---~ 327 (507)
+++ +..||++.+|++|+|.+|.|||..+... ....++++|+|+|+++++ ++++... +
T Consensus 138 ~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~~i~~~~~ 197 (481)
T PRK14358 138 LPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELARRIGNDNK 197 (481)
T ss_pred cCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHHhcCCCcc
Confidence 775 4569999999889999999998643210 012468999999997653 2333321 2
Q ss_pred CCCchhhhhHHhhhhcC-cEEEEEeccEEEecCCHHHHHHHHHH-hhc
Q 010554 328 TSNDFGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMA-LTK 373 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~-~V~~~~~~gyw~dIgt~~~y~~An~~-ll~ 373 (507)
..+.+++|+++.+++++ ++++|.++++|..++...+|+.++++ +++
T Consensus 198 ~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~ 245 (481)
T PRK14358 198 AGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLR 245 (481)
T ss_pred CCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHH
Confidence 22345679999998874 79999999999999988888888765 443
|
|
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=344.01 Aligned_cols=358 Identities=18% Similarity=0.249 Sum_probs=260.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.++|||||||.||||+| .+||||+||+|+ |||+|+++.|..+ +++|+|++++..+++.+|+.+.+ .
T Consensus 2 ~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~-------~-- 67 (430)
T PRK14359 2 KLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF-------P-- 67 (430)
T ss_pred CccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC-------C--
Confidence 36899999999999997 799999999999 9999999999987 78999999999999998886321 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.++++...+ ..+.||+++++.+. ...++|++++||..+. ..+.++.+.+.++++++.+.++++
T Consensus 68 ~v~~~~~~~-------~~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~ 130 (430)
T PRK14359 68 GVIFHTQDL-------ENYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLAD 130 (430)
T ss_pred ceEEEEecC-------ccCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCC
Confidence 145543221 12369999998742 1247899999998442 235566676777888888888765
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---CCC
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSN 330 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~~~ 330 (507)
+..||.+..| +|+|..+.|+|...... ...+++++|+|+|++++|.++++.... ...
T Consensus 131 --~~~~g~v~~d-~g~v~~i~e~~~~~~~~-----------------~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e 190 (430)
T PRK14359 131 --PKGYGRVVIE-NGQVKKIVEQKDANEEE-----------------LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKE 190 (430)
T ss_pred --CccCcEEEEc-CCeEEEEEECCCCCccc-----------------ccceEEEeEEEEEEHHHHHHHHHhcCcccccCc
Confidence 4569988775 68999999987532100 013678999999999999877654321 133
Q ss_pred chhhhhHHhhhhc-CcEEEEEec-cEEEecCCHHHHHHHHHHhhccCCC-c-----------c-ccCCCCCcccCCCcCC
Q 010554 331 DFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKESPA-F-----------H-FYDPKTPFYTSPRFLP 395 (507)
Q Consensus 331 d~~~dil~~li~~-~~V~~~~~~-gyw~dIgt~~~y~~An~~ll~~~~~-~-----------~-~~~~~~~i~~~~~~~~ 395 (507)
.+.+++++.+++. .++++|.++ ++|.||+||+||+.|+..+..+... + . +..++..+...+.+.+
T Consensus 191 ~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~ 270 (430)
T PRK14359 191 YYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEE 270 (430)
T ss_pred eehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECC
Confidence 4567888888876 789999987 6899999999999998766543211 0 0 1122222333333445
Q ss_pred Cceec-ceeeeceEEcCCcEEccceEeeeeE--------------EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeC
Q 010554 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIV--------------DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIID 459 (507)
Q Consensus 396 p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii--------------~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg 459 (507)
+++|+ ++.|.+++||++|.|+++.|++|+| ..+|.+++|. +++ ++ ++||+++.|.+|+||
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~-~~---~~i~~~~~i~d~~Ig 346 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKL-NG---VKAGHLSYLGDCEID 346 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEe-cc---ccccccccccCCEEC
Confidence 55664 4666778888888887677777776 2456666664 555 66 789999999999999
Q ss_pred CCCEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 460 KNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 460 ~na~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
++|.||.++++.+. ..++++...+.+..|..| +.||+++.|++|++|
T Consensus 347 ~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 400 (430)
T PRK14359 347 EGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAP-VNIEDNVLIAAGSTV 400 (430)
T ss_pred CCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 99999999999865 345566666666666666 677888888888864
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=323.76 Aligned_cols=366 Identities=22% Similarity=0.280 Sum_probs=273.9
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.+.+||||||.||||+ +..||.|.||+|+ ||++|+++.+...+.+++++|++|..+.+.+.+.+. ..
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~~-- 68 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------DD-- 68 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------cC--
Confidence 5789999999999999 6899999999999 999999999999999999999999999998888521 01
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
++++ .|.. .+|||||+.+++++|.+ ..+.++||++||+ |. ...|+++++.|...++.+|++....
T Consensus 69 -v~~v--~Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~ 135 (460)
T COG1207 69 -VEFV--LQEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL 135 (460)
T ss_pred -ceEE--Eecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc
Confidence 2322 1321 27999999999999942 2345799999999 44 4557889999999999999999988
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---C
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~ 328 (507)
++ |..||.+..+++|+|..+.|..+..+. .+.-..+++|+|+|+...|.++|..... .
T Consensus 136 ~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e-----------------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaq 196 (460)
T COG1207 136 DD--PTGYGRIVRDGNGEVTAIVEEKDASEE-----------------EKQIKEINTGIYAFDGAALLRALPKLSNNNAQ 196 (460)
T ss_pred CC--CCCcceEEEcCCCcEEEEEEcCCCCHH-----------------HhcCcEEeeeEEEEcHHHHHHHHHHhcccccc
Confidence 87 788999999999999999996654321 1123579999999999988888876433 3
Q ss_pred CCchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccC------CCccccCCCC-------CcccCCC
Q 010554 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-------PFYTSPR 392 (507)
Q Consensus 329 ~~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~------~~~~~~~~~~-------~i~~~~~ 392 (507)
.+.|++|++..+-.+ .+|.++..+++ ...+|+-..+-++++.+.++. ....+.||.. .+..+..
T Consensus 197 gEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~Dvv 276 (460)
T COG1207 197 GEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVV 276 (460)
T ss_pred CcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceE
Confidence 567888988766544 78999988866 678999999999998776543 2233444443 2223333
Q ss_pred cCCCcee------------c-ceeeeceEEcCCcEEcc-ceEeeeeE---------------------EeeccCceEe-e
Q 010554 393 FLPPTKI------------D-NCRIKDAIISHGCFLRE-CTVEHSIV---------------------DYYQTESEIA-S 436 (507)
Q Consensus 393 ~~~p~~i------------~-~~~I~~siIg~gc~I~~-~~I~~Sii---------------------~~vg~~~~i~-s 436 (507)
+.|.+.+ + +|.|+||.|++||.|.. |.+++|.| +.+|+++|+. +
T Consensus 277 I~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a 356 (460)
T COG1207 277 IEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKA 356 (460)
T ss_pred EecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEEecc
Confidence 3443332 2 25555666666666653 55666666 3677777774 7
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC-CCCCCCeEEcCCe-----EEEcCCCEeCCCccC
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA-DRPELGFYIRSGI-----TIIMEKATIEDGMVI 507 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~-~~~~~~~~i~~g~-----~vig~~~~i~~gt~i 507 (507)
.|++| ++++.-++|.++-||+++-||.+++..|.|+.--- ..++++..|.+.- +.||+++.|++||+|
T Consensus 357 ~ig~g---sKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 357 TIGKG---SKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred cccCC---ccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 77777 77888888888999999999999999999876443 4445555564432 467888888888875
|
|
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=345.96 Aligned_cols=365 Identities=18% Similarity=0.239 Sum_probs=240.6
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.|..|+|||||||.|+||++ .+||||+|++|+ |||+|++++|.++|+++|++++++..+++.+|+.. .
T Consensus 2 ~~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~-----~--- 69 (456)
T PRK09451 2 LNSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD-----E--- 69 (456)
T ss_pred CCCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc-----C---
Confidence 35679999999999999983 699999999999 99999999999999999999999988888777741 1
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
.+.++... ..+||+++++.++.++. ..++|++++||+ +.+.++.++++.|++.+ +++++
T Consensus 70 ---~~~~i~~~---------~~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 70 ---PLNWVLQA---------EQLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ---CcEEEECC---------CCCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 13333211 13699999999988774 136899999998 55788999999886554 45666
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC-
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP- 327 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~- 327 (507)
.+.++ +..||++.. ++++|.+|.|||.....+ ...+++++|+|+|+++.|.++++...+
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 66554 567999754 578999999998632110 012579999999999999877775433
Q ss_pred --CCCchhhhhHHhhhhc-CcEEEEE------eccE--EEecCCHHHHHHHHHH--hhcc-----CCC-cc---------
Q 010554 328 --TSNDFGSEIIPAAIME-HDVQAYI------FRDY--WEDIGTIKSFYEANMA--LTKE-----SPA-FH--------- 379 (507)
Q Consensus 328 --~~~d~~~dil~~li~~-~~V~~~~------~~gy--w~dIgt~~~y~~An~~--ll~~-----~~~-~~--------- 379 (507)
....++.|+++.++++ .+|++|. ++|| |.|++++++|+++|+. ++.. .|. ..
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~ 270 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGR 270 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECC
Confidence 2445678999999987 5899996 4676 7889999999999852 3221 111 11
Q ss_pred --ccCCCCCcccCCCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCc-------
Q 010554 380 --FYDPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKV------- 443 (507)
Q Consensus 380 --~~~~~~~i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~------- 443 (507)
.+.+...+...+.+.+.+.|+ +|.|.+|+||++|.|+ +|.+++|+| ..+|.++.|. +.++++..
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 111112222222233334444 3666677777777776 566666666 2344444442 33333300
Q ss_pred -c------eeeCCCcEEeeeEeCCCCEECCCcEEecCCC-------CccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 444 -P------IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDD-------VQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 444 -~------~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~-------~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
. +.|+..+.+.+|.||++|.||+++++.+.++ +++......+..+.+| +.||++++|++|++|
T Consensus 351 ~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~gs~v 427 (456)
T PRK09451 351 KKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIGAGTTV 427 (456)
T ss_pred eceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCC-cEECCCCEECCCCEE
Confidence 0 3334444444556666666666666654322 3333333333333344 455666666666653
|
|
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=313.04 Aligned_cols=233 Identities=26% Similarity=0.432 Sum_probs=200.1
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCch-HHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSA-SLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~-~l~~~l~~~~~~~~~~~~~~ 173 (507)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++.. .++++ +++|++|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l-----lGdgs~~g-- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL-----LGDGSDFG-- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh-----hcCccccC--
Confidence 7999999999999999999999999999999 999999999999999999999988544 44333 36777887
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
+.+.+..|+. +.|.|+|+..+.+++. +++|+++.||.++.-++.++++.+.+++.++++++.++++
T Consensus 73 -v~itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 73 -VDITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred -cceEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 5555555643 4799999999998885 4899999999988779999999999988899999999997
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC--Cc
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--ND 331 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~--~d 331 (507)
|++||++++|++|+|+.+.|||+.+. |+++-+|+|+|+++++. +++...|+. +-
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCce
Confidence 77899999999999999999999874 58999999999999995 567666642 22
Q ss_pred hhhhhHHhhhhcC-cEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 332 FGSEIIPAAIMEH-DVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 332 ~~~dil~~li~~~-~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
-++|+++.+++++ .+......|.|.|.||+++|++|++.++.
T Consensus 195 EITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 195 EITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred EehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 3578899988775 55556777899999999999999998876
|
|
| >TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=325.32 Aligned_cols=243 Identities=18% Similarity=0.267 Sum_probs=192.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-c------
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F------ 164 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~------ 164 (507)
|.+|+|||||||.||||+|+|.++||||+||+|+ |||+|+|++|.++|+++|+|+++|+.+++.+|+...+ +
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4589999999999999999999999999999999 9999999999999999999999999999999986432 1
Q ss_pred ----------CCCcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc-------
Q 010554 165 ----------GNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (507)
Q Consensus 165 ----------~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~------- 227 (507)
..+.+++ +++....| .+++|||+|+++++++++ +++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q-------~~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQ-------AQPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeC-------CCcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0000122 23322233 235899999999999885 36899999999987
Q ss_pred -CCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE----CCCCc---EEEEEeCCCccccccccccccccCCCcccc
Q 010554 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI----DNMGR---IAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (507)
Q Consensus 228 -~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i----d~~gr---V~~~~eKp~~~~~~~~~~~~~~~~~~~~~~ 299 (507)
+++.++++.|.++++.+ +++.++.+ .++.||++.+ |++|+ |.++.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 58999999998777766 44444432 3788999998 44564 5899999964321
Q ss_pred ccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 300 ~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
..++++++|+|+|++++|.. ++...+. .....+++++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 12478999999999999874 4543332 22346799999999999999999999999999999999998863
|
GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose |
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=317.57 Aligned_cols=241 Identities=34% Similarity=0.586 Sum_probs=194.7
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEE-EEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I-~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+|||||||.||||+|||.++||||+|++|+||||+|+|++|.++|++++ +|+++++.+++.+|+.+.+ +++ ..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~-----~~~-~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY-----KFG-VK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG-----GGT-EE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc-----ccc-cc
Confidence 6999999999999999999999999999999999999999999999995 5555688888998886432 232 12
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
++++. |.. ..|||+||+++..+++.. ...++|+|++||++++.++.++++.|+++++++++++...+.+
T Consensus 75 i~~i~--~~~-------~~Gta~al~~a~~~i~~~--~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (248)
T PF00483_consen 75 IEYIV--QPE-------PLGTAGALLQALDFIEEE--DDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVE 143 (248)
T ss_dssp EEEEE--ESS-------SSCHHHHHHHTHHHHTTS--EE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESS
T ss_pred ceeee--ccc-------ccchhHHHHHHHHHhhhc--cccceEEEEeccccccchhhhHHHhhhcccccccccccccccc
Confidence 44443 322 259999999999998630 0023599999999999999999999999998554444444444
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHH--hhCCCCCch
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR--WRYPTSNDF 332 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~--~~~~~~~d~ 332 (507)
.++.||++.+|++|+|.+|.|||..+.. +.++++|+|+|++++|..+++ .......++
T Consensus 144 ~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~ 203 (248)
T PF00483_consen 144 DPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDF 203 (248)
T ss_dssp GGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHH
T ss_pred ccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhH
Confidence 5788999999999999999999986531 368999999999999987755 223346778
Q ss_pred hhhhHHhhhhcC-cEEEEEecc--EEEecCCHHHHHHHHHHhhc
Q 010554 333 GSEIIPAAIMEH-DVQAYIFRD--YWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 333 ~~dil~~li~~~-~V~~~~~~g--yw~dIgt~~~y~~An~~ll~ 373 (507)
..++++.+++++ .+.+|.+++ +|.|||||++|++||+.+++
T Consensus 204 l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 204 LTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 899999999886 556789998 79999999999999999875
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=339.83 Aligned_cols=359 Identities=19% Similarity=0.262 Sum_probs=241.8
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||+| .+||+|+||+|+ |||+|++++|.++|+++++|++++..+.+.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--------~~--- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--------RD--- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--------CC---
Confidence 7899999999999997 799999999999 99999999999999999999999998888877742 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+.++...+ ++||+++++.++.++++ .++|++++||+ +...++.++++.|.+. .+++++.+.+
T Consensus 66 i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~ 129 (451)
T TIGR01173 66 VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP 129 (451)
T ss_pred cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC
Confidence 33332111 25999999999888742 36899999998 4466789999998764 3677776664
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---C
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~---~ 329 (507)
+ +..|+.+..|++|+|..+.|||...... ...+.+++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~ 190 (451)
T TIGR01173 130 D--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQG 190 (451)
T ss_pred C--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhcccccccC
Confidence 3 5569999998889999999987532110 0125789999999999987776653321 2
Q ss_pred CchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccCCC------ccc-------c------CCCCCc
Q 010554 330 NDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKESPA------FHF-------Y------DPKTPF 387 (507)
Q Consensus 330 ~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~~~------~~~-------~------~~~~~i 387 (507)
..+..++++.++++ .++++|.+++| |.+++++++|..++..+..+.+. ..+ . .++..+
T Consensus 191 e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i 270 (451)
T TIGR01173 191 EYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEI 270 (451)
T ss_pred cEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEE
Confidence 34567899999877 57999999988 99999999999887655432110 000 0 111222
Q ss_pred ccCCCcCCCc------eec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEe
Q 010554 388 YTSPRFLPPT------KID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 388 ~~~~~~~~p~------~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~ 454 (507)
...+.+.+++ .|+ +|.|.+++||++|.|+ +|.|.+++| +.+|.++.|. ++++++ |.||+++.+.
T Consensus 271 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~---~~Ig~~~~i~ 347 (451)
T TIGR01173 271 DPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAG---VHIGNFVETK 347 (451)
T ss_pred cCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCC---cEEccceeec
Confidence 2222222223 332 2555667777777776 566777666 2556666663 666666 5666655555
Q ss_pred eeEe-----------------CCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 455 NCII-----------------DKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 455 nsII-----------------g~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+++| |+++.||.++++.+.+ .+++......+..+.+| +.||++++|++|+++
T Consensus 348 ~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~-~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 348 NARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAP-VKVGDGATIAAGSTV 423 (451)
T ss_pred CcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECC-cEECCCCEEccCCEE
Confidence 4444 4444444444444321 22222233333333334 567888888877764
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=323.58 Aligned_cols=343 Identities=20% Similarity=0.312 Sum_probs=245.2
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEecc-CchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQF-NSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~-~~~~l~~~l~~~~~~~~~~~ 170 (507)
|.++||||+|||.||||--+|.+.|||||||+|+ |||+|+|++|.++|+++|+|++.. ....++..|...+ ....+
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~-~l~~~- 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI-DLKKR- 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC-ccccc-
Confidence 6689999999999999999999999999999999 999999999999999999999987 3445555554332 11101
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
...+++-...+. -.|||++||.....+. .+||||++||.++++++..+++++|..++...+++..
T Consensus 84 -~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~ 148 (433)
T KOG1462|consen 84 -PDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGN 148 (433)
T ss_pred -ccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhcc
Confidence 012333322221 1699999999988775 3699999999999999999999999887655544432
Q ss_pred cCC---------CCCccceEEEECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 251 VGE---------SRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 251 ~~~---------~~~~~~g~v~id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
... .....+.++.++++ +|+. |.... ......+.+.+++|+..|+... .+.+.++++|+|+.++++.
T Consensus 149 ~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~-y~~~~-~d~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~d~ 225 (433)
T KOG1462|consen 149 ALSEVPIPGQKGKKKQARDVIGINEDTERLA-YSSDS-ADEEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVIDL 225 (433)
T ss_pred ccccccccCcccccccccceeeeccccceeE-EeecC-CcCCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHHHH
Confidence 211 11123556666664 4544 43322 2233467888999998887543 5689999999999999964
Q ss_pred HHHhhCCCCCchhhhhHHhhhhc---------------------------------CcEEEEEec--cEEEecCCHHHHH
Q 010554 321 LLRWRYPTSNDFGSEIIPAAIME---------------------------------HDVQAYIFR--DYWEDIGTIKSFY 365 (507)
Q Consensus 321 ll~~~~~~~~d~~~dil~~li~~---------------------------------~~V~~~~~~--gyw~dIgt~~~y~ 365 (507)
|+.. +...+|-.+++|.++++ -++++|... .-+.+++|.-.|+
T Consensus 226 -l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~ 303 (433)
T KOG1462|consen 226 -LSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYM 303 (433)
T ss_pred -HhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHH
Confidence 4422 23344555666665532 245555554 4588999999999
Q ss_pred HHHH--HhhccCCCccccC----CCCCcccCCCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeee
Q 010554 366 EANM--ALTKESPAFHFYD----PKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASL 437 (507)
Q Consensus 366 ~An~--~ll~~~~~~~~~~----~~~~i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~ 437 (507)
++|+ .+..-.+.-.+.. ....+.....+.+.++|+ ++.|+.|+||++|.|+ .++|.+|++
T Consensus 304 eiN~~k~~~~l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSil------------ 371 (433)
T KOG1462|consen 304 EINRDKKLKKLCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSIL------------ 371 (433)
T ss_pred hhhHHHHHHHhccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEe------------
Confidence 9994 3322111111111 112223345566778887 6888888888888888 578888776
Q ss_pred ecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecC
Q 010554 438 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
|+| +.||+|+.|+|||||.+|.||+++.+.||
T Consensus 372 -m~n---V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 372 -MDN---VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred -ecC---cEecCCcceecceecccceecCCCeeeee
Confidence 999 99999999999999999999999999995
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=335.87 Aligned_cols=328 Identities=15% Similarity=0.227 Sum_probs=224.4
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.+.|||||||.||||+ ..+||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++. . .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~-----~---~--- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFP-----D---E--- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcc-----c---c---
Confidence 5889999999999997 5799999999999 9999999999999999999999998877765553 1 0
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.++++.... ..||+++++.+++++++ ...++|++++||+ +...++.++++.|+ ++++++++.++
T Consensus 70 ~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~ 135 (456)
T PRK14356 70 DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL 135 (456)
T ss_pred CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc
Confidence 134443211 26999999999988863 1247899999998 34567899998886 66788888877
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---C
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~ 328 (507)
++ +..||++.. ++|+|.++.|||...... ....+.++++|+|+|++++|..+++...+ .
T Consensus 136 ~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~---------------~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~ 197 (456)
T PRK14356 136 PD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL---------------HGPETGEVNAGIYYLRLDAVESLLPRLTNANKS 197 (456)
T ss_pred CC--CCCceEEEE-cCCeEEEEEECCCCChHH---------------hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccC
Confidence 76 567998877 578999999988632100 00013578999999999998777664322 2
Q ss_pred CCchhhhhHHhhhhc-CcEEEEEecc--EEEecCCHHHHHHHHHHhhccCCCccccCCCCCcc--------cCCCcCCCc
Q 010554 329 SNDFGSEIIPAAIME-HDVQAYIFRD--YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFY--------TSPRFLPPT 397 (507)
Q Consensus 329 ~~d~~~dil~~li~~-~~V~~~~~~g--yw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~--------~~~~~~~p~ 397 (507)
.+.+.+++++.+++. .++++|.+.+ +|.+|+||++|.+|+..+..+... .++.+...+. ..+.+.+.+
T Consensus 198 ~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~-~~~~~~~~i~~~~~~~i~~~~~i~~~~ 276 (456)
T PRK14356 198 GEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVE-KHLESGVLIHAPESVRIGPRATIEPGA 276 (456)
T ss_pred CcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHH-HHHHcCCEEeCCCcEEECCCcEECCCC
Confidence 334567889888765 5799999876 579999999999998777654211 1122222221 122233333
Q ss_pred eec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcE
Q 010554 398 KID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVV 469 (507)
Q Consensus 398 ~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~ 469 (507)
.+. .|.|. +++||+||.|+ +|.|++|+| ..++.++.+. ++|+++ +.||++++|. +++|+++++||.++.
T Consensus 277 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~---~~Ig~~~~i~~~~~ig~~~~ig~~~~ 353 (456)
T PRK14356 277 EIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG---CSVGPYARLRPGAVLEEGARVGNFVE 353 (456)
T ss_pred EEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc---cEECCceEECCCCEECCCCEecCCce
Confidence 332 23332 45666666665 566666665 2445555553 555555 5566666665 456666666665555
Q ss_pred Eec
Q 010554 470 IVN 472 (507)
Q Consensus 470 i~~ 472 (507)
|.+
T Consensus 354 i~~ 356 (456)
T PRK14356 354 MKK 356 (456)
T ss_pred eee
Confidence 544
|
|
| >PRK10122 GalU regulator GalF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=320.61 Aligned_cols=245 Identities=18% Similarity=0.263 Sum_probs=195.4
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cC-----
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~----- 165 (507)
|++|+|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++||++|+|++++..+++.+|+...| +.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 5789999999999999999999999999999999 9999999999999999999999999999999996432 10
Q ss_pred -----------CCcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc-------
Q 010554 166 -----------NGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR------- 227 (507)
Q Consensus 166 -----------~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~------- 227 (507)
....++ +++....|.. ++|||+|++++++++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000011 2332223321 3799999999999884 36899999999986
Q ss_pred -CCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEEC----CCC---cEEEEEeCCCccccccccccccccCCCcccc
Q 010554 228 -MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (507)
Q Consensus 228 -~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id----~~g---rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~ 299 (507)
+|+.++++.|.+++++++ ++....+ .++.||++.+| ++| +|..+.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 589999999998887744 4444433 47789999986 355 78999999964321
Q ss_pred ccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHh-hcc
Q 010554 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL-TKE 374 (507)
Q Consensus 300 ~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~l-l~~ 374 (507)
..++++++|+|+|++++|..+.+ ..+. ...+++++++.+++++++++|.++|+|+|||+|++|.+|+.++ +..
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~~ 280 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRN 280 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhcC
Confidence 12468999999999999876544 3232 3345679999999999999999999999999999999999997 543
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=330.22 Aligned_cols=366 Identities=19% Similarity=0.217 Sum_probs=257.5
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.|+++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+++.+ +
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~------- 69 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I------- 69 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c-------
Confidence 46789999999999999984 589999999999 99999999999999999999999998888877742 1
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
+. .+.++. +. +..|++++++.++.+++. ..++|++++||+ ++ ..++..+++ |.+.++++++.+
T Consensus 70 ~~-~~~~~~--~~-------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~ 134 (446)
T PRK14353 70 AP-DAEIFV--QK-------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLG 134 (446)
T ss_pred CC-CceEEE--cC-------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEE
Confidence 10 122221 11 136999999999888741 247899999998 44 455778877 445667788887
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC-
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP- 327 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~- 327 (507)
.+..+ +..||.+.. ++|+|.++.|||...... ....++++|+|+|+++.|.++++...+
T Consensus 135 ~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 194 (446)
T PRK14353 135 FRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGND 194 (446)
T ss_pred EEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhccc
Confidence 77654 567988877 568999999998532110 012578999999999887777765432
Q ss_pred --CCCchhhhhHHhhhhc-CcEEEEEec-cEEEecCCHHHHHHHHHHhhcc---------C----CCccccCCCCCcccC
Q 010554 328 --TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMALTKE---------S----PAFHFYDPKTPFYTS 390 (507)
Q Consensus 328 --~~~d~~~dil~~li~~-~~V~~~~~~-gyw~dIgt~~~y~~An~~ll~~---------~----~~~~~~~~~~~i~~~ 390 (507)
....+..++++.+++. .+++++..+ ++|.||+||+||..|+..+..+ . +...++.+...|..+
T Consensus 195 ~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~ 274 (446)
T PRK14353 195 NAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRD 274 (446)
T ss_pred CCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCC
Confidence 1234567888888866 569999987 5799999999999998644221 0 111122233333333
Q ss_pred CCcCCCc------eec-------ceeeeceEEcCCcEEc-cceEe-eeeE---EeeccCceEe-eeecCCCcceeeCCCc
Q 010554 391 PRFLPPT------KID-------NCRIKDAIISHGCFLR-ECTVE-HSIV---DYYQTESEIA-SLLAEGKVPIGVGRNT 451 (507)
Q Consensus 391 ~~~~~p~------~i~-------~~~I~~siIg~gc~I~-~~~I~-~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~ 451 (507)
..+.+++ .++ .+.|.+++||++|+|+ ++.|. +|+| +.+|.++++. +.++++ +.|+.++
T Consensus 275 ~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~ 351 (446)
T PRK14353 275 VVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG---AKVNHLT 351 (446)
T ss_pred CEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---CEECCee
Confidence 3333333 332 1444467778888887 56665 5666 3567777774 777777 7778888
Q ss_pred EEeeeEeCCCCEECCCcEEec-------CCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 452 KIRNCIIDKNVKIGKDVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 452 ~I~nsIIg~na~Ig~~~~i~~-------~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.+.+++||++|.||.++++.+ ...+++......+..+.+| +.||+++.|++|+++
T Consensus 352 ~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~-~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 352 YIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAP-VTIGDGAYIASGSVI 413 (446)
T ss_pred EEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCC-CEECCCCEECCCCEE
Confidence 888888888888888887744 2345555555666666666 567888888777754
|
|
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=313.92 Aligned_cols=235 Identities=22% Similarity=0.370 Sum_probs=194.3
Q ss_pred EEEEcCC--CCCcccCCccCCCccceeecCcchhhHHHHHHHHh-cCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 97 AIILGGG--AGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 97 aVILAaG--~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+.. ..++ .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~----~~~~-~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ----QEFN-V 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc----cccC-c
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999996321 1122 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.+.++ .|.. .+||++|++.++++++. ...++|+|++||++++.|+.++++.|+++++++|+++.+++.
T Consensus 75 ~i~~~--~~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 75 PIRYL--QEYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred eEEEe--cCCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 23332 2211 36999999999988852 124689999999999999999999999999999999988765
Q ss_pred CCCccceEEEEC-CCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC-----
Q 010554 254 SRASDYGLVKID-NMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP----- 327 (507)
Q Consensus 254 ~~~~~~g~v~id-~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~----- 327 (507)
+.+..||++.+| ++|+|.++.|||..+. +.++++|+|+|++++|..+ ....+
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e 200 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQE 200 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhccccccc
Confidence 557789999998 6789999999986432 3689999999999998654 32221
Q ss_pred -------------CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 328 -------------TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 328 -------------~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
...++..++++.++++++|++|.++|||.||||+++|++||+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 201 AQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 12345679999999999999999999999999999999999863
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=329.46 Aligned_cols=354 Identities=20% Similarity=0.243 Sum_probs=238.1
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+. .+
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~-----~~------- 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLP-----EW------- 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcc-----cc-------
Confidence 7899999999999984 799999999999 99999999999975 8999999998888877663 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+.++. +. ..+||+++++.++.++++ .++|++++||+ +.+.++.++++.|+++++++|+++.+.+
T Consensus 64 ~~~~~--~~-------~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~ 129 (448)
T PRK14357 64 VKIFL--QE-------EQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE 129 (448)
T ss_pred cEEEe--cC-------CCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC
Confidence 23322 21 136999999999988741 47899999997 6678899999999999999999998876
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---C
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~---~ 329 (507)
+ +..||++..| +|+| .+.|||..+... ...+++++|+|+|++++|.++++...+. .
T Consensus 130 ~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~ 188 (448)
T PRK14357 130 D--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKG 188 (448)
T ss_pred C--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCC
Confidence 5 5679998887 6788 788876432110 0125799999999999987776643321 2
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccE--EEecCCHHHHHHHHHHhhcc------CCCcc-------ccCCCCCcccCCCcC
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKE------SPAFH-------FYDPKTPFYTSPRFL 394 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~------~~~~~-------~~~~~~~i~~~~~~~ 394 (507)
..+..|+++.+ .++++|.+.+| |.+++++++|..+...+... .+... ++.+...|..++.+.
T Consensus 189 ~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~ 265 (448)
T PRK14357 189 EYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIY 265 (448)
T ss_pred eEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEc
Confidence 23456777766 35899999998 66777999998876554211 01111 122222222233222
Q ss_pred ------------CCceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEeee
Q 010554 395 ------------PPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRNC 456 (507)
Q Consensus 395 ------------~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~ns 456 (507)
+++.|+ .+.|.+|+||+||.|..+.+.+|+| ..++.++.+. ++++++ +.||+++.+.++
T Consensus 266 ~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~---~~Ig~~~~i~~~ 342 (448)
T PRK14357 266 PMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKS---VKIGNFVEIKKS 342 (448)
T ss_pred CCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCC---cEecCceeeecc
Confidence 333333 2555567777777776566777777 3566666662 667766 666666665544
Q ss_pred Ee-----------------CCCCEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 457 II-----------------DKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 457 II-----------------g~na~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+| |+||.||.++++.+. ..+++......+..|.+| +.||+++.|++|++|
T Consensus 343 ~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~g-v~Ig~~~~i~ag~~v 416 (448)
T PRK14357 343 TIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAP-VRIGKGALIGAGSVI 416 (448)
T ss_pred EEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCC-cEECCCCEEcCCCEE
Confidence 44 444444444444321 123333333333344444 566777777777654
|
|
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=305.17 Aligned_cols=232 Identities=26% Similarity=0.421 Sum_probs=195.6
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|++||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+ + . ..++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~-~-~--~~~~--- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE-Y-E--KKLG--- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc-c-c--ccCC---
Confidence 6899999999999999999999999999999 99999999999999999999999999999999862 2 1 1222
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
++++...+. ...||+++++.++.+++. ..++|+|++||++++.++.++++.|+++++++|+++.+.++
T Consensus 73 ~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (233)
T cd06425 73 IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED- 140 (233)
T ss_pred eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC-
Confidence 444432222 136999999999988851 24689999999999999999999999999999999988765
Q ss_pred CCccceEEEECC-CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchh
Q 010554 255 RASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (507)
Q Consensus 255 ~~~~~g~v~id~-~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~ 333 (507)
++.||++.+|+ +|+|+++.|||..+. ++++++|+|+|++++|..+.+ ...++.
T Consensus 141 -~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~~ 194 (233)
T cd06425 141 -PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSIE 194 (233)
T ss_pred -ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----Ccccch
Confidence 56799999987 789999999986432 367999999999999965432 223445
Q ss_pred hhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 334 ~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
.++++.++++++|++|.++|||.||||+++|++|++.+|
T Consensus 195 ~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 195 KEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 688999999999999999999999999999999998764
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=326.86 Aligned_cols=362 Identities=20% Similarity=0.279 Sum_probs=241.9
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
.++|||||||.|+||++ .+||||+||+|+ |||+|+|++|.++|+++++++++++.+++.+|+.. +
T Consensus 2 ~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-----~------ 66 (458)
T PRK14354 2 NRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-----R------ 66 (458)
T ss_pred CceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-----C------
Confidence 46899999999999984 799999999999 99999999999999999999999998888777641 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
+.++... +.+||+++++.++.++++ ..++|++++||. +...++.++++.|++.+++.|+++.+.
T Consensus 67 -~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~ 132 (458)
T PRK14354 67 -SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA 132 (458)
T ss_pred -cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc
Confidence 2222211 136999999999988852 136799999997 446789999999988888888888776
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--- 328 (507)
++ +..|+.+..|++++|..+.|||..... ....+++++|+|+|+++.|.+.+++....
T Consensus 133 ~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 193 (458)
T PRK14354 133 EN--PTGYGRIIRNENGEVEKIVEQKDATEE-----------------EKQIKEINTGTYCFDNKALFEALKKISNDNAQ 193 (458)
T ss_pred CC--CCCceEEEEcCCCCEEEEEECCCCChH-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhCccccC
Confidence 54 456898888888999999998742110 00135789999999998776666553321
Q ss_pred CCchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccC------CCccccCCC-------CCcccCCC
Q 010554 329 SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-------TPFYTSPR 392 (507)
Q Consensus 329 ~~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~------~~~~~~~~~-------~~i~~~~~ 392 (507)
...+..++++.+++. .++++|.++++ |+++++++||..|+..+..+. +...++++. ..+...+.
T Consensus 194 ~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~ 273 (458)
T PRK14354 194 GEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTV 273 (458)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCE
Confidence 233467888888866 57999999976 567779999999886543221 111222322 11222222
Q ss_pred c------------CCCceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEe
Q 010554 393 F------------LPPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 393 ~------------~~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~ 454 (507)
+ ...+.|+ ++.|.+|+||++|.|+++.+.+|+| ..+|.++.|. ++|+++ +.||+++.|+
T Consensus 274 i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~---~~i~~~~~i~ 350 (458)
T PRK14354 274 IEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEE---VKIGNFVEIK 350 (458)
T ss_pred EeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCC---cEECCceEEe
Confidence 2 2222222 2445556666666666555666666 2455555552 566665 5666666555
Q ss_pred eeEeCCC-----------------CEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 455 NCIIDKN-----------------VKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 455 nsIIg~n-----------------a~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+++|+++ +.||.++.+.|. ..+++......+..+..| +.||+++.|++|++|
T Consensus 351 ~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~-~~ig~~~~v~~~~~v 426 (458)
T PRK14354 351 KSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAP-VTVGDNAYIAAGSTI 426 (458)
T ss_pred eeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCC-cEECCCCEECCCCEE
Confidence 5444444 444444444332 122334444444445555 567777777777654
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=306.17 Aligned_cols=235 Identities=23% Similarity=0.395 Sum_probs=189.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEec-cCchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~-~~~~~l~~~l~~~~~~~~~~~ 170 (507)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|+++ +..+.+.+|+. ++..|
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~-----~g~~~ 74 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQW 74 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc-----Ccccc
Confidence 5689999999999999999999999999999999 99999999999999999998765 45667777774 33345
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
+. .+.+. .|.. ++|||+|+..+.+++. .+++++++||+++ +.|+.++++.|.++++++|+++.
T Consensus 75 g~-~i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~ 138 (292)
T PRK15480 75 GL-NLQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAY 138 (292)
T ss_pred Cc-eeEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEE
Confidence 41 23333 3321 3699999999998884 2568889999754 89999999999988889999988
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC-
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~- 328 (507)
++++ ++.||++.+|++|+|+++.|||..+. ++++++|+|+|+++++.. ++...+.
T Consensus 139 ~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~~ 194 (292)
T PRK15480 139 HVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPSA 194 (292)
T ss_pred EcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCCC
Confidence 8865 67899999998899999999997442 368999999999998864 4543332
Q ss_pred -CCchhhhhHHhhhhcCcEEE-EEecc-EEEecCCHHHHHHHHHHhh
Q 010554 329 -SNDFGSEIIPAAIMEHDVQA-YIFRD-YWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 329 -~~d~~~dil~~li~~~~V~~-~~~~g-yw~dIgt~~~y~~An~~ll 372 (507)
.+-..+++++.+++++++.. +...| +|.|+||+++|.+|+..+.
T Consensus 195 ~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 195 RGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 12225789999998887644 46678 4999999999999998775
|
|
| >cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=297.33 Aligned_cols=231 Identities=23% Similarity=0.382 Sum_probs=189.0
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccC-chHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~-~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++ .+++.+|+.. +..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~-----~~~~~-- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD-----GSDLG-- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc-----ccccC--
Confidence 6899999999999999999999999999998 9999999999999999999998754 4778888852 22343
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+++....+. ...||++|++.++++++ .++|+|++||+++ +.++.++++.|.++++++|+++.+++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
T cd02538 73 -IRITYAVQP-------KPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVN 138 (240)
T ss_pred -ceEEEeeCC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 333332332 13699999999988874 3679999999755 67899999999988899999988876
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CC
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~ 330 (507)
+ ++.||++.+|++|+|+++.|||..+. +.++++|+|+|++++|. +++...+. ..
T Consensus 139 ~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~ 194 (240)
T cd02538 139 D--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGE 194 (240)
T ss_pred c--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCe
Confidence 5 56799999998899999999986432 25789999999999884 56543222 22
Q ss_pred chhhhhHHhhhhcCcEEEEEec--cEEEecCCHHHHHHHHHHh
Q 010554 331 DFGSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 331 d~~~dil~~li~~~~V~~~~~~--gyw~dIgt~~~y~~An~~l 371 (507)
.+..++++.+++++++.++.++ |||.|||||++|++||+.+
T Consensus 195 ~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 195 LEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred EEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 3456899999998888888877 9999999999999999865
|
This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=317.22 Aligned_cols=325 Identities=21% Similarity=0.315 Sum_probs=217.4
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+.+.+|+.+. + .
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~--------~--~ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL--------P--G 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc--------C--C
Confidence 6799999999999985 789999999999 999999999999999999999999888888777421 1 1
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
++++. +. ++.|++++++.++.++++ ..++++|++||+ +...++.++++.|++.++++++++.+.+
T Consensus 68 i~~v~--~~-------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~ 134 (450)
T PRK14360 68 LEFVE--QQ-------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP 134 (450)
T ss_pred eEEEE--eC-------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 44443 21 136999999999888752 236799999998 5577899999999999998888877766
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---C
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~---~ 329 (507)
+ +..||.+..|++|+|.++.|||..... ...++++++|+|+|+++.|.+++++..+. .
T Consensus 135 ~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~ 195 (450)
T PRK14360 135 N--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQK 195 (450)
T ss_pred C--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccCC
Confidence 5 556999999989999999999853210 01236899999999999988887654332 3
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccE--EEecCCHHHHHHHHHHhhccC------CCccccCCCC-CcccCCCcCCCceec
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPKT-PFYTSPRFLPPTKID 400 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~------~~~~~~~~~~-~i~~~~~~~~p~~i~ 400 (507)
..+.+++++.+. ++.+|.+.++ |..+++++++..+...+.... +...+.++.. .+.....+.+++.++
T Consensus 196 e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~ 272 (450)
T PRK14360 196 EYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIE 272 (450)
T ss_pred ceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEEC
Confidence 345667777663 3667777776 456999999998887654321 1111222221 111122222333333
Q ss_pred -ceeee-ceEEcCCcEEc-cceEeeeeEE---eeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 401 -NCRIK-DAIISHGCFLR-ECTVEHSIVD---YYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 401 -~~~I~-~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
++.|. ++.||++|.|+ ++.|.+|+|+ .++ .+.+ .++++++ +.||.+++|+ +|+||++|+||+++.|.+
T Consensus 273 ~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~---~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~ 348 (450)
T PRK14360 273 PQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDG---VKIGPYAHLRPEAQIGSNCRIGNFVEIKK 348 (450)
T ss_pred CCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCC---cEECCCCEECCCCEEeCceEECCCEEEec
Confidence 23333 34555555554 4455554441 121 1112 2455555 5555555554 455555555555555543
|
|
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=302.65 Aligned_cols=231 Identities=26% Similarity=0.447 Sum_probs=188.7
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEec-cCchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++||++|+|+++ +..+++.+|+. ++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg-----~g~~~g--- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG-----DGSQWG--- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc-----cccccC---
Confidence 589999999999999999999999999999 99999999999999999998875 55667777764 344554
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
+.+....|.. ++|||+|++.+.+++. .++|++++||++ ++.++.++++.|.+.++++|+++.++++
T Consensus 72 ~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~ 138 (286)
T TIGR01207 72 VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD 138 (286)
T ss_pred ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC
Confidence 3343333421 3699999999999885 367889999975 5889999999999888899999988875
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCc
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SND 331 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d 331 (507)
++.||++.+|++|+|+++.|||..+. ++++++|+|+|+++++. +++...+. ..-
T Consensus 139 --p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~ 194 (286)
T TIGR01207 139 --PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGEL 194 (286)
T ss_pred --HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcE
Confidence 67899999998899999999996442 36899999999999875 55544332 223
Q ss_pred hhhhhHHhhhhcCcEEEEEe-ccE-EEecCCHHHHHHHHHHhh
Q 010554 332 FGSEIIPAAIMEHDVQAYIF-RDY-WEDIGTIKSFYEANMALT 372 (507)
Q Consensus 332 ~~~dil~~li~~~~V~~~~~-~gy-w~dIgt~~~y~~An~~ll 372 (507)
..+++++.+++++++.++.+ +|+ |.|+||+++|++||..+.
T Consensus 195 eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 195 EITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred eHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 45799999998877766666 676 999999999999998764
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=298.49 Aligned_cols=244 Identities=22% Similarity=0.307 Sum_probs=191.1
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCC-cccCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNG-TNFGD 172 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~-~~~~~ 172 (507)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++++++.+|+...+ +... ...+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996432 1100 00000
Q ss_pred -----------CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC---CHHHHHHHHH
Q 010554 173 -----------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (507)
Q Consensus 173 -----------~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~---dl~~ll~~h~ 238 (507)
..+++....| .+.+|||+|++.++.+++ .++|+|++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQ-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEc-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHHHH
Confidence 0122221122 234799999999998885 278999999998864 4999999998
Q ss_pred HcCCceEEEEEEcCCCCCccceEEEECC----CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEe
Q 010554 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (507)
Q Consensus 239 ~~~a~~tl~~~~~~~~~~~~~g~v~id~----~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~ 314 (507)
+.+++ ++++.+++.+.+..||++.+|+ +++|.++.|||..... .+.++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 87776 4666666655567899999985 2589999999863211 2368999999999
Q ss_pred HHHHHHHHHhhC-CCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 315 KDVLFKLLRWRY-PTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 315 ~~iL~~ll~~~~-~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
+++|..+.+... .....+..++++.++++++|++|.++|||.||||+++|++||+++.
T Consensus 207 ~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 999876533111 1233456789999999899999999999999999999999999874
|
Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. |
| >TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=293.89 Aligned_cols=232 Identities=19% Similarity=0.309 Sum_probs=189.3
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCccc--CC
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNF--GD 172 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~--~~ 172 (507)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++||++|+|+++|+.+++.+|+.+.. .+.+.++ ..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999986321 1111110 00
Q ss_pred C------------eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHc
Q 010554 173 G------------FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDR 240 (507)
Q Consensus 173 ~------------~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~ 240 (507)
+ .+++. .+ ..++||++||+.+++++. .++|+|++||+++++|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLV--DT-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeee--ec-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 01111 11 113799999999988874 478999999999999999999999999
Q ss_pred CCceEEEEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 241 DADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 241 ~a~~tl~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
++++|+++.+ + +..||++.+|+ ++|++|.|||... +.++++|+|+|++++| .
T Consensus 145 ~~d~tl~~~~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il-~ 196 (254)
T TIGR02623 145 GKKATVTAVQ--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVL-D 196 (254)
T ss_pred CCCEEEEEec--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHH-h
Confidence 9999987642 2 46799999985 6999999998532 2579999999999998 4
Q ss_pred HHHhhCCCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhcc
Q 010554 321 LLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 321 ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~ 374 (507)
+++. ...++.+++++.+++++++++|.++|||.||||+++|.+|+..+...
T Consensus 197 ~l~~---~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 197 LIDG---DATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred hccc---cCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 5553 23467789999999999999999999999999999999999987653
|
Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. |
| >TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=296.97 Aligned_cols=239 Identities=21% Similarity=0.286 Sum_probs=187.4
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cC-----CCc
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG-----NGT 168 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~-----~~~ 168 (507)
|+|||||||.||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ +. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996432 11 000
Q ss_pred ccC-------CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC---CHHHHHHHHH
Q 010554 169 NFG-------DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFIQSHV 238 (507)
Q Consensus 169 ~~~-------~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~---dl~~ll~~h~ 238 (507)
.+. ...+.+....| .+.+||++|++.++.++. .++|+|++||+++.. ++.++++.|+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00012211122 234799999999988874 378999999998854 6999999999
Q ss_pred HcCCceEEEEEEcCCCCCccceEEEECC----CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEe
Q 010554 239 DRDADITISCAAVGESRASDYGLVKIDN----MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (507)
Q Consensus 239 ~~~a~~tl~~~~~~~~~~~~~g~v~id~----~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~ 314 (507)
++++++ +++..++.+++..||++.+|+ +++|+.+.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 988876 666666655578899999862 3699999999953211 2368999999999
Q ss_pred HHHHHHHHHhhCC-CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHH
Q 010554 315 KDVLFKLLRWRYP-TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (507)
Q Consensus 315 ~~iL~~ll~~~~~-~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~A 367 (507)
+++|..+.+.... ....+..++++.++++++|++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 9998766442221 1234567899999999999999999999999999999875
|
Built to distinquish between the highly similar genes galU and galF |
| >PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=296.75 Aligned_cols=244 Identities=22% Similarity=0.315 Sum_probs=194.2
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCC--Cc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN--GT 168 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~--~~ 168 (507)
.+-|+|||||||.|+||+|+|..+||||+||+|+ |+|+|+|++|.++||++|+|++++..+++.+|+...+ |+. ..
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~ 84 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhh
Confidence 4568999999999999999999999999999999 9999999999999999999999999999999996432 220 00
Q ss_pred ccCC-----------CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--------CC
Q 010554 169 NFGD-----------GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--------MD 229 (507)
Q Consensus 169 ~~~~-----------~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--------~d 229 (507)
+... ....+.+..| ...+|||+|++++++++. +++|+|++||++++ .|
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q-------~~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~d 151 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQ-------GLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDN 151 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeec-------CCCCChHHHHHHHHHHcC------CCCEEEEeCcceeccccccccccc
Confidence 0000 0012222222 124799999999988774 37899999999874 79
Q ss_pred HHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECC-------CCcEEEEEeCCCccccccccccccccCCCccccccC
Q 010554 230 YMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302 (507)
Q Consensus 230 l~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~-------~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (507)
+.++++.|.+++++ |+++.++++ +..||++.+|+ +++|.++.|||..... .
T Consensus 152 l~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~ 209 (302)
T PRK13389 152 LAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------P 209 (302)
T ss_pred HHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------C
Confidence 99999999988876 777777754 67899998863 3589999999974211 1
Q ss_pred CceeeeEEEEEeHHHHHHHHHhhCC--CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 303 PYVASMGVYVFKKDVLFKLLRWRYP--TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 303 ~~l~~~Giyif~~~iL~~ll~~~~~--~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
++++++|+|+|++++| ++++...+ ....+.+++++.++++.+|++|.++|||.|||||++|.+|++++-
T Consensus 210 s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 210 SNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred ccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 3689999999999998 56665332 234567899999999999999999999999999999999999863
|
|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=284.81 Aligned_cols=219 Identities=21% Similarity=0.306 Sum_probs=182.7
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
+|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. .|+ +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~------~~~---~ 70 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS------RFG---L 70 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc------cCC---c
Confidence 589999999999999999999999999999 999999999999999999999999999999998631 232 3
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHH--HcCCceEEEEEEcCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHV--DRDADITISCAAVGE 253 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~--~~~a~~tl~~~~~~~ 253 (507)
.+....+. .+..||+++++.++.+++ .++|+|++||++++.|+.++++.|+ ..++.+|+...+.+.
T Consensus 71 ~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (221)
T cd06422 71 RITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPG 138 (221)
T ss_pred eEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCC
Confidence 33332221 023699999999988874 3789999999999999999999998 456666666655543
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchh
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~ 333 (507)
...||.+.+|++|+|..+.|||.. +++++|+|+|++++|..+.+. ....
T Consensus 139 --~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~ 187 (221)
T cd06422 139 --HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSL 187 (221)
T ss_pred --CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccH
Confidence 567999999988999999888742 478999999999998765432 2346
Q ss_pred hhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHH
Q 010554 334 SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEA 367 (507)
Q Consensus 334 ~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~A 367 (507)
+++++.+++++++++|.++|||.||||+++|.+|
T Consensus 188 ~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 188 NPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 7899999999999999999999999999999875
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=284.77 Aligned_cols=241 Identities=16% Similarity=0.263 Sum_probs=190.5
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC----C
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG----D 172 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~----~ 172 (507)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++|+.+++.+|+.+.+. .+..+. .
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~-~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFL-HNSDVTIDLGT 78 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhh-hcCceeEeecc
Confidence 69999999999999999999999999999 99999999999999999999999999999999975321 011111 0
Q ss_pred CeEEEecCccCCCC---CCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEE
Q 010554 173 GFVEVLAATQTPGE---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 173 ~~V~vl~~~q~~~~---~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
+.+.++......-. .......||++|++.++.++. ..++|+|++||++++.|+.++++.|...++++|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~ 153 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV 153 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe
Confidence 11222221000000 000012589999999998874 1278999999999999999999999999999998775
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
. ....||++.+|++|+|..+.|||... +.++++|+|+|++++|..+ +.. .
T Consensus 154 ~----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~ 203 (253)
T cd02524 154 H----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---D 203 (253)
T ss_pred c----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---c
Confidence 3 24679999999899999999998642 1478999999999998644 322 4
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhcc
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~ 374 (507)
.++.+++++.+++++++++|.++|||.||+|+++|.+|+..+...
T Consensus 204 ~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 204 TVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred chhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 466779999999999999999999999999999999999877543
|
Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=278.10 Aligned_cols=232 Identities=26% Similarity=0.398 Sum_probs=191.4
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.+ +|+ ..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~-----~~~-~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS-----RFG-VR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh-----hcC-Ce
Confidence 7899999999999999999999999999999 9999999999999999999999999999988885321 222 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
+.++. +. ++.||+++++.++.++. .++|++++||++++.++.++++.|.++++++++++.+.++
T Consensus 74 i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (236)
T cd04189 74 ITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED- 137 (236)
T ss_pred EEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC-
Confidence 33332 21 23699999999988774 3689999999999999999999999999999999888765
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCch
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~ 332 (507)
+..||++.+|+ ++|..+.|||..+. +.++++|+|+|++++|..+ +...+. ...+
T Consensus 138 -~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~ 193 (236)
T cd04189 138 -PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGELE 193 (236)
T ss_pred -cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEE
Confidence 46789888875 59999999986431 2578999999999998654 432221 2234
Q ss_pred hhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 333 ~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
..++++.++++ .+|++|.+++||.||||+++|.+||+.+++
T Consensus 194 ~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 194 ITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 57889988866 579999999999999999999999999885
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=267.20 Aligned_cols=217 Identities=30% Similarity=0.520 Sum_probs=182.4
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+ .++ ..+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-----~~~-~~i~ 73 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS-----KFG-VNIE 73 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh-----hcC-ceEE
Confidence 69999999999999999999999999999 9999999999999999999999999899988885321 122 1233
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++. +. ...|++++++.++.++. .++|+|++||++++.|+.++++.|+++++++|+++.+.+ .+
T Consensus 74 ~~~--~~-------~~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 136 (217)
T cd04181 74 YVV--QE-------EPLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DP 136 (217)
T ss_pred EEe--CC-------CCCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CC
Confidence 332 21 12699999999987772 489999999999999999999999999999999988776 36
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~~di 336 (507)
..||++.+|++|+|.++.|||.... ..++++|+|+|++++|. +++.......++..++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 194 (217)
T cd04181 137 SRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDA 194 (217)
T ss_pred CcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHH
Confidence 7899999998899999999986432 26899999999999884 5554332346778899
Q ss_pred HHhhhhcCcEEEEEeccEEEecC
Q 010554 337 IPAAIMEHDVQAYIFRDYWEDIG 359 (507)
Q Consensus 337 l~~li~~~~V~~~~~~gyw~dIg 359 (507)
++.++++.+|++|.++|||.|||
T Consensus 195 ~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 195 IPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHhcCCEEEEEcCCEEecCC
Confidence 99999999999999999999986
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=268.43 Aligned_cols=223 Identities=25% Similarity=0.420 Sum_probs=185.3
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~-----~~~~-~~~ 73 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY-----RGGI-RIY 73 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc-----ccCc-eEE
Confidence 69999999999999999999999999999 9999999999999999999999999999988886322 1221 122
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
+.. +. ...|++++++.++.++. .++|++++||++++.++.++++.|++.++++++++.+..+ .
T Consensus 74 ~~~--~~-------~~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~ 136 (223)
T cd06915 74 YVI--EP-------EPLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--A 136 (223)
T ss_pred EEE--CC-------CCCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--C
Confidence 221 11 12699999999987773 4789999999999999999999999888889988887654 4
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~~di 336 (507)
..|+.+.+|++|+|..+.|||.... ++++++|+|+|++++|..+.+. ..++.+++
T Consensus 137 ~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~ 191 (223)
T cd06915 137 SRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADV 191 (223)
T ss_pred CcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHH
Confidence 5789999998899999999876421 3688999999999998754221 33456789
Q ss_pred HHhhhhcCcEEEEEeccEEEecCCHHHHHHHH
Q 010554 337 IPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 337 l~~li~~~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
++.++++++|.+|.++++|.||+|++||+.|+
T Consensus 192 ~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 192 LPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 99999888999999999999999999999873
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=263.82 Aligned_cols=219 Identities=24% Similarity=0.451 Sum_probs=178.1
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. ..++. .+.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~~~~~-~i~ 73 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-----SKFGV-NIS 73 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-----cccCc-cEE
Confidence 69999999999999999999999999999 999999999999999999999999998898888531 12321 133
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++ .+. .+.||+++++.+.... .++|+|++||++++.++.++++.|+..++++++++.+... .
T Consensus 74 ~~--~~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~ 135 (220)
T cd06426 74 YV--RED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--Q 135 (220)
T ss_pred EE--ECC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--C
Confidence 32 221 1369999997665332 4789999999999999999999999999999988877543 3
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchhhhh
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEI 336 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~~di 336 (507)
..||++..|+ ++|.++.|||.. +.++++|+|+|+++++..+ + +.......++
T Consensus 136 ~~~g~~~~d~-~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~i-~---~~~~~~l~~~ 187 (220)
T cd06426 136 VPYGVVETEG-GRITSIEEKPTH-----------------------SFLVNAGIYVLEPEVLDLI-P---KNEFFDMPDL 187 (220)
T ss_pred CcceEEEECC-CEEEEEEECCCC-----------------------CCeEEEEEEEEcHHHHhhc-C---CCCCcCHHHH
Confidence 4699999986 899999998753 2478999999999998653 2 1222235688
Q ss_pred HHhhhhc-CcEEEEEeccEEEecCCHHHHHHHH
Q 010554 337 IPAAIME-HDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 337 l~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
++.++++ .+|++|.++++|.||||+++|.+||
T Consensus 188 ~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 188 IEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 9888876 5699999999999999999999986
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=262.97 Aligned_cols=206 Identities=17% Similarity=0.253 Sum_probs=163.8
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~~~~ 173 (507)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+ |+.. +...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPK--SSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccc--cCcc
Confidence 5899999999999999999999999999999 9999999999999999999999999999999997543 3221 1111
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHH-----cCCceEEEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD-----RDADITISC 248 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~-----~~a~~tl~~ 248 (507)
.+.++. +. ...|||+|++.+... . ...++|++++||+++++|+.++++.|++ +++++|+++
T Consensus 78 ~i~~~~--~~-------~~~~~~~al~~~~~~-~----~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 78 IVIIIM--SE-------DCRSLGDALRDLDAK-G----LIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred eEEEEe--CC-------CcCccchHHHHHhhc-c----ccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEE
Confidence 244332 21 135899999765321 0 1247899999999999999999999998 489999999
Q ss_pred EEcCCCC----CccceEEEECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHH
Q 010554 249 AAVGESR----ASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (507)
Q Consensus 249 ~~~~~~~----~~~~g~v~id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL 318 (507)
.++++++ ..+++++.+|++ ++|+.|.|||..+.....+++++++...+... ..+++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~-i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 144 KEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVE-IRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEE-EECCceecCEEEeCCCCC
Confidence 8887643 224788888865 89999999998776555677888777766543 467999999999999864
|
N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=255.18 Aligned_cols=248 Identities=21% Similarity=0.307 Sum_probs=204.8
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCC----
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN---- 166 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~---- 166 (507)
++-.+|||+|||.||||.|-|+..||-||||.++ |+|+|+++.+..+||++|++||+.+...+.+|+...| +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 3567999999999999999999999999999999 9999999999999999999999999999999987555 221
Q ss_pred -Cc--------ccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC---CHHHHH
Q 010554 167 -GT--------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM---DYMDFI 234 (507)
Q Consensus 167 -~~--------~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~---dl~~ll 234 (507)
++ +. ...+.+.+..|.. ++|.|||++++++++. +++|.|+.||.++.. -+++|+
T Consensus 81 ~~K~~~L~~v~~i-~~~~~i~~vRQ~e-------~~GLGhAVl~A~~~vg------~EpFaVlL~Ddl~~~~~~~l~qmi 146 (291)
T COG1210 81 RGKRELLEEVRSI-PPLVTISFVRQKE-------PLGLGHAVLCAKPFVG------DEPFAVLLPDDLVDSEKPCLKQMI 146 (291)
T ss_pred hCHHHHHHHHHhc-ccCceEEEEecCC-------CCcchhHHHhhhhhcC------CCceEEEeCCeeecCCchHHHHHH
Confidence 11 01 1234555555542 4799999999999985 589999999999865 378899
Q ss_pred HHHHHcCCceEEEEEEcCCCCCccceEEE----ECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeE
Q 010554 235 QSHVDRDADITISCAAVGESRASDYGLVK----IDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309 (507)
Q Consensus 235 ~~h~~~~a~~tl~~~~~~~~~~~~~g~v~----id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 309 (507)
+.+.+.+.. ++.+.+++.++.+.||++. .+++ .+|..++|||+..+. .|+++..|
T Consensus 147 ~~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~G 206 (291)
T COG1210 147 ELYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVG 206 (291)
T ss_pred HHHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeee
Confidence 998888764 6788889887889999997 4333 489999999976543 36899999
Q ss_pred EEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccC
Q 010554 310 VYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (507)
Q Consensus 310 iyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~ 375 (507)
-|+|++++|. +|++..++ .+--++|.+..++++..+++|.++|-.+|+|++..|.+|+.++..+.
T Consensus 207 RYil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 207 RYVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eeecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 9999999996 67775554 23346788999999999999999999999999999999999886543
|
|
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=249.08 Aligned_cols=198 Identities=47% Similarity=0.780 Sum_probs=162.2
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCcccCCCeE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFV 175 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~~~~~~V 175 (507)
|||||||.||||+|||..+||+|+||+|+||||+|+++++.++|+++|+|+++++.+++.+|+.+.. |+. +.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDL--DRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccC--CCCCCCE
Confidence 6999999999999999999999999999879999999999999999999999999999999986432 221 1111225
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESR 255 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 255 (507)
+++...+.. .+.+.+|||+|++.++.++++ ...++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 555433311 123568999999999988852 12478999999999999999999999999988888765
Q ss_pred CccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC-CCCCchhh
Q 010554 256 ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY-PTSNDFGS 334 (507)
Q Consensus 256 ~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~-~~~~d~~~ 334 (507)
+++|+|+|++++|..+++... ....++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 257999999999987776532 23457788
Q ss_pred hhHHhhhhcCcEEEEEeccEEEec
Q 010554 335 EIIPAAIMEHDVQAYIFRDYWEDI 358 (507)
Q Consensus 335 dil~~li~~~~V~~~~~~gyw~dI 358 (507)
|+++.++++.++++|.++|||.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999986
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=250.50 Aligned_cols=222 Identities=17% Similarity=0.229 Sum_probs=173.0
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+. .+ +.
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~-------~~---~~ 69 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY-------PN---IK 69 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc-------CC---eE
Confidence 69999999999999999999999999999 999999999999999999999999999999888521 11 45
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++|+++.+..++..
T Consensus 70 ~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (229)
T cd02523 70 FVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWE 132 (229)
T ss_pred EEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCccccc
Confidence 54332211 2699999999987772 78999999999865 5677888888999998887444334
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHh---hCC--CCCc
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW---RYP--TSND 331 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~---~~~--~~~d 331 (507)
..+++...| .+++..+.+||..+. ...++++|+|+|++++|..+.+. ..+ ...+
T Consensus 133 ~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~ 191 (229)
T cd02523 133 DEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNL 191 (229)
T ss_pred ccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccc
Confidence 456654444 378999999886432 12578999999999998765432 111 2456
Q ss_pred hhhhhHHhhhhc--CcEEEEEeccEEEecCCHHHHHHHH
Q 010554 332 FGSEIIPAAIME--HDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 332 ~~~dil~~li~~--~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
+.+++++.++++ .+++++.. +||.||||+++|++|+
T Consensus 192 ~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 192 YYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred cHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 678999999884 44555555 8999999999999874
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=246.79 Aligned_cols=222 Identities=18% Similarity=0.246 Sum_probs=168.8
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
.||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++|+++++|++++.. ....|+.+.+ ... . . .+.
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~-~~~-~-~--~~~ 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESL-KLL-A-P--NAT 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHH-HHh-C-C--CCE
Confidence 48999999999999999999999999999 99999999999999999999986432 2223332221 110 0 1 123
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRA 256 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 256 (507)
++...+. ..||++++..++..+. ..++|+|++||++++.++.++++.|.+.+++.++++...+ .
T Consensus 74 i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 137 (231)
T cd04183 74 VVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS---H 137 (231)
T ss_pred EEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---C
Confidence 3221111 2699999999988773 2478999999999999999999999888877777766552 3
Q ss_pred ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHH-HHHHHHHhhC-----CCCC
Q 010554 257 SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLLRWRY-----PTSN 330 (507)
Q Consensus 257 ~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~-iL~~ll~~~~-----~~~~ 330 (507)
..||.+.+|++|+|..+.||+.. +.++++|+|+|+++ .|.+.++... +...
T Consensus 138 ~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~ 194 (231)
T cd04183 138 PRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGE 194 (231)
T ss_pred CCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCc
Confidence 47999999999999999888531 24689999999997 6655555321 1123
Q ss_pred chhhhhHHhhhhcC-cEEEEEe-ccEEEecCCHHHH
Q 010554 331 DFGSEIIPAAIMEH-DVQAYIF-RDYWEDIGTIKSF 364 (507)
Q Consensus 331 d~~~dil~~li~~~-~V~~~~~-~gyw~dIgt~~~y 364 (507)
.+..++++.+++++ +|++|.+ +++|.|||||++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 34578999999774 6999999 6999999999987
|
GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=234.35 Aligned_cols=204 Identities=19% Similarity=0.309 Sum_probs=161.7
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||.|+|...||+|+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+|... ..+ ..
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~-~~~-~~ 77 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSL-SSK-MI 77 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccc-cCC-ce
Confidence 6899999999999999999999999999999 99999999999999999999999999999999976553210 011 12
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHH--HHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS--HVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~--h~~~~a~~tl~~~~~~ 252 (507)
+.+....+. ...|||++++++++++. ++|+|++||+++++|+.+++++ +..+++++|+++....
T Consensus 78 v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~ 143 (216)
T cd02507 78 VDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLAS 143 (216)
T ss_pred EEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEecc
Confidence 444433332 23699999999987763 7899999999999999999976 5566777777776554
Q ss_pred CCC-------CccceEEEECCC---CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHH
Q 010554 253 ESR-------ASDYGLVKIDNM---GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (507)
Q Consensus 253 ~~~-------~~~~g~v~id~~---grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL 318 (507)
... ..+++++.+|++ .+++++.|++... ..+.+++++|...|+.. .++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~~-i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 144 PPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPNVT-IRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCCEE-EEcCcccccEEEecCcCC
Confidence 322 456899999987 5888888887643 34456788888777644 467999999999999864
|
N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=234.77 Aligned_cols=234 Identities=18% Similarity=0.285 Sum_probs=168.4
Q ss_pred eEEEEEcCCCCCcccCCcc-CCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHH-HHHHHhcccCCCcccC
Q 010554 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASL-NRHIARTYFGNGTNFG 171 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~-~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l-~~~l~~~~~~~~~~~~ 171 (507)
|++||||||.||||+|||. .+||+|+|++|.+|||+|+++++.+. ++++|+|+++++...+ .+++.+ . .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~-~------ 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G-L------ 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c-C------
Confidence 6899999999999999996 79999999999339999999999998 5999999999865543 344431 0 0
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--CCHHHHHHHHHH---cCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVD---RDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--~dl~~ll~~h~~---~~a~~tl 246 (507)
..+.++.... .+||++|+..+..++.. ...++.++|++||+++. .+|.++++.|.+ .++.+|+
T Consensus 73 -~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~ 140 (274)
T cd02509 73 -PEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTF 140 (274)
T ss_pred -CCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1134443222 26999999999888752 12346799999999886 567777776554 6777888
Q ss_pred EEEEcCCCCCccceEEEECCCC-----cEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHH
Q 010554 247 SCAAVGESRASDYGLVKIDNMG-----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~~g-----rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~l 321 (507)
.+.+... ...||++..+++. +|.+|.|||.....+.+. ....+++|+|+|+|+++.|.+.
T Consensus 141 gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~-------------~~g~~~wNsGiyi~~~~~l~~~ 205 (274)
T cd02509 141 GIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYL-------------ESGNYLWNSGIFLFRAKTFLEE 205 (274)
T ss_pred EeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHh-------------hcCCeEEECceeeeeHHHHHHH
Confidence 8877643 3679999998653 899999999754321110 0123689999999999988887
Q ss_pred HHhhCCCCC----------------chhhhhHHh--------hh--hcCcEEEEEeccEEEecCCHHH
Q 010554 322 LRWRYPTSN----------------DFGSEIIPA--------AI--MEHDVQAYIFRDYWEDIGTIKS 363 (507)
Q Consensus 322 l~~~~~~~~----------------d~~~dil~~--------li--~~~~V~~~~~~gyw~dIgt~~~ 363 (507)
++...|.-. .+..+.++. ++ +..++.+.+.+..|-|+|++++
T Consensus 206 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 206 LKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 776544211 111233332 11 2367888888889999999875
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=221.21 Aligned_cols=221 Identities=22% Similarity=0.338 Sum_probs=173.6
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||+| .+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+.+.+++.+ ++ ++
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~---~~ 65 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PN---VE 65 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CC---cE
Confidence 69999999999996 689999999999 99999999999999999999999988888777641 12 34
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
++.... ..|++++++.+++++++ ..++|+++.||+ +...++.++++.|.+.++++++.+.+..+
T Consensus 66 ~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~- 131 (229)
T cd02540 66 FVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED- 131 (229)
T ss_pred EEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC-
Confidence 433211 25999999999988851 247899999998 34678999999998888888888777664
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---CCCc
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~~~d 331 (507)
+..|+.+..|++|+|..+.|||...... ...+++++|+|+|+++.|.++++.... ....
T Consensus 132 -p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~ 193 (229)
T cd02540 132 -PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEY 193 (229)
T ss_pred -CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCcE
Confidence 5679988888889999999987422100 012578999999999887777765432 2345
Q ss_pred hhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHH
Q 010554 332 FGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSF 364 (507)
Q Consensus 332 ~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y 364 (507)
+..++++.+++. .+|++|.++|| |+.|+||.++
T Consensus 194 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 194 YLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 678999999976 57999999877 7788888763
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=225.80 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=154.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCc-hHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~~~~ 173 (507)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++.. +.+.+++.+..|... .. .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~--~~-~ 76 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLK--QK-L 76 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccC--cc-e
Confidence 6899999999999999999999999999999 99999999999999999999999765 456666643212211 01 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.+.+. .+. ...||+++|+.+...+ .++|+|++||++++.++.++++.|+.+++.+|+++.+...
T Consensus 77 ~~~~~--~~~-------~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~ 140 (214)
T cd04198 77 DEVTI--VLD-------EDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPV 140 (214)
T ss_pred eEEEe--cCC-------CCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCC
Confidence 12222 111 2369999999998765 3789999999999999999999999999999999887642
Q ss_pred CC-----------CccceEEEECC-CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHH
Q 010554 254 SR-----------ASDYGLVKIDN-MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL 318 (507)
Q Consensus 254 ~~-----------~~~~g~v~id~-~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL 318 (507)
.. ...+.++.+|+ ++|++++.+... ..+.+.+++++|...|+.. .++++.++|+|+|++++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~--~~~~~~~~~~~l~~~~~~~-i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 141 SSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEED--LDEDLELRKSLLKRHPRVT-ITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred cccccCCcccccCCCCCceEEEcCCCCEEEEECCHHH--hhhhhhHHHHHHHhCCCEE-EEcCcccceEEEEEeeeC
Confidence 11 23467777775 578998865432 2235567888888777643 467999999999998764
|
N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. |
| >TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-24 Score=226.31 Aligned_cols=240 Identities=16% Similarity=0.285 Sum_probs=165.3
Q ss_pred eEEEEEcCCCCCcccCCccC-CCccceeecC-cchhhHHHHHHHHhcCCCEEEEEeccCchH-HHHHHHhcccCCCcccC
Q 010554 95 VAAIILGGGAGTKLFPLTLR-AATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~-~PK~LlPI~g-~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~-l~~~l~~~~~~~~~~~~ 171 (507)
|.+||||||.||||+|||.. +||+|+|+.| + |||+|+++.|...++++++|+++..... +.+.+. .+ +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~-~~-------~ 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLR-EI-------G 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHH-Hc-------C
Confidence 57999999999999999997 8999999977 7 9999999999999999999999865432 333332 21 1
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--CCHHHHHHHH---HHcCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSH---VDRDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--~dl~~ll~~h---~~~~a~~tl 246 (507)
.....++.... .+|||+|+..+..++.+.. ...+.++|++||+++. .+|.++++++ .+.++.+|+
T Consensus 72 ~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtl 141 (468)
T TIGR01479 72 KLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTF 141 (468)
T ss_pred CCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11122332211 2699999998776663210 1234599999998764 3488888865 344566666
Q ss_pred EEEEcCCCCCccceEEEECC------CCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 247 SCAAVGESRASDYGLVKIDN------MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~------~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
...+..+ ...||++..++ .++|.+|.|||.......+ .....+++|+|+|+|+++.|.+
T Consensus 142 gi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll~ 206 (468)
T TIGR01479 142 GIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYLA 206 (468)
T ss_pred EecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHHH
Confidence 6655433 46799999873 2589999999975432111 0011378999999999887777
Q ss_pred HHHhhCCCC-----------------CchhhhhHH---------hhh-hcCcEEEEEeccEEEecCCHHHHHHHH
Q 010554 321 LLRWRYPTS-----------------NDFGSEIIP---------AAI-MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 321 ll~~~~~~~-----------------~d~~~dil~---------~li-~~~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
.+++..|+- ..+..++++ .++ +..++++...+.+|.|+|++++|.+.-
T Consensus 207 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 207 ELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 666544321 111123444 122 235788888888999999999998874
|
This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. |
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=200.08 Aligned_cols=226 Identities=16% Similarity=0.255 Sum_probs=157.5
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+.|||||+|.++||. ||+|+|++|+ |||+|++++|..+ |+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--------FG-- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--------cC--
Confidence 679999999999995 6999999999 9999999999998 99999998864 556666642 12
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHc-CCceEEEEEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR-DADITISCAA 250 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~-~a~~tl~~~~ 250 (507)
+.++...+. +..||++ +..+...+. ...+.|++++||+ +...++..+++.|... ++++++++.+
T Consensus 63 -~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~ 129 (239)
T cd02517 63 -GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATP 129 (239)
T ss_pred -CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 333322221 1358886 445544443 1136799999997 4466789999998776 7888888887
Q ss_pred cCCCC----CccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC
Q 010554 251 VGESR----ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (507)
Q Consensus 251 ~~~~~----~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~ 326 (507)
++++. ...|+ +..|++|+|+.|.++|.....+ |. .....++++|+|+|++++|..+.+..
T Consensus 130 ~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~--~~~~~~~~~Giy~~~~~~~~~~~~~~- 193 (239)
T cd02517 130 ISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SS--EDFPYYKHIGIYAYRRDFLLRFAALP- 193 (239)
T ss_pred cCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CC--CCCceeEEEEEEEECHHHHHHHHhCC-
Confidence 75421 23344 4567779999998766422100 00 00136899999999999998765531
Q ss_pred CCCCchhhhhHH--hhhhc-CcEEEEEeccEEEecCCHHHHHHHHH
Q 010554 327 PTSNDFGSEIIP--AAIME-HDVQAYIFRDYWEDIGTIKSFYEANM 369 (507)
Q Consensus 327 ~~~~d~~~dil~--~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~ 369 (507)
..... ..+.++ .++++ .+|+++..+++|.|||||++|.+|+.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 PSPLE-QIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred Cchhh-hhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 11111 223333 34544 56999999999999999999999974
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=199.73 Aligned_cols=234 Identities=17% Similarity=0.195 Sum_probs=160.8
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.|.++|+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~--------~~-- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA--------FG-- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH--------cC--
Confidence 4689999999999994 6999999999 999999999999999999998864 556666632 12
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
+.++...+. ++.||+++...+ ..++ ....+.+++++||+ +. ..++.++++.|+.+++++++++.+.
T Consensus 63 -~~v~~~~~~-------~~~gt~~~~~~~-~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~ 130 (245)
T PRK05450 63 -GEVVMTSPD-------HPSGTDRIAEAA-AKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPI 130 (245)
T ss_pred -CEEEECCCc-------CCCchHHHHHHH-HhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeec
Confidence 233322221 235777655433 2221 01235699999999 44 4668899999987777777777666
Q ss_pred CC----CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 252 ~~----~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
.+ ..++.++++ +|++|+|++|.|||..+.... .++. ...++++++|+|+|++++|..+++. .+
T Consensus 131 ~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~ 197 (245)
T PRK05450 131 HDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PP 197 (245)
T ss_pred CCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CC
Confidence 32 335567765 888899999999985331100 0000 0124789999999999999877653 22
Q ss_pred CCCchh--hhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHh
Q 010554 328 TSNDFG--SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 328 ~~~d~~--~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~l 371 (507)
...+.. .++++.+.+..+|+++..+| +|.|||||+||.+|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 198 SPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 211111 12233333557899999996 999999999999999764
|
|
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=185.73 Aligned_cols=229 Identities=15% Similarity=0.223 Sum_probs=149.4
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEe-ccCchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~-~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
|..|+|||||||.|+||.| ..||||+.++|+ ++|+|+|++|.++|+++++||+ +|+.+-+..++. .| .|
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~-----~~ 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KY-----PF 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cC-----Cc
Confidence 4579999999999999999 899999999999 9999999999999999999999 888887777774 32 22
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
. .+++...... -.+|+.+|..+++++. +.|++++||++|...+ ++...+..+. ++.+..
T Consensus 71 ~---~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~---~e~l~~a~~~-~li~d~ 129 (239)
T COG1213 71 N---AKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSI---LERLLEAPGE-GLIVDR 129 (239)
T ss_pred c---eEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHH---HHHHHhCcCC-cEEEec
Confidence 1 3444322211 1367899999988775 6799999999997654 4444443332 333332
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
.+......-.....+++|++..+..+-.. .+..++|++.|+++++..+.+-......
T Consensus 130 ~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~~~ 186 (239)
T COG1213 130 RPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVERSE 186 (239)
T ss_pred cccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhhhh
Confidence 22111111112233468999988654432 2457899999999987655442211111
Q ss_pred chhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhhcc
Q 010554 331 DFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 331 d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~ 374 (507)
.-..++.+... ....+-......+|+||+||+|+.+|...+...
T Consensus 187 ~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~ 231 (239)
T COG1213 187 YDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPN 231 (239)
T ss_pred HHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHHH
Confidence 11122222221 111111111124799999999999999887653
|
|
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=185.63 Aligned_cols=225 Identities=17% Similarity=0.297 Sum_probs=153.1
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~--------~~- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA--------FG- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH--------cC-
Confidence 3789999999999994 4999999999 9999999999998 89999999864 566666642 12
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCC-ceEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDA-DITISCA 249 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a-~~tl~~~ 249 (507)
++++...+. +..|+++ +..+...+. .+.|+++.||+ +...++.++++.|++.+. ++++++.
T Consensus 64 --~~v~~~~~~-------~~~g~~~-~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (238)
T PRK13368 64 --GKVVMTSDD-------HLSGTDR-LAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCA 127 (238)
T ss_pred --CeEEecCcc-------CCCccHH-HHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEE
Confidence 222222221 1247774 555544332 47899999996 557789999999876543 5566666
Q ss_pred EcCC-C---CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhh
Q 010554 250 AVGE-S---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (507)
Q Consensus 250 ~~~~-~---~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~ 325 (507)
+.+. . ++..+++ .++++|+++.+.|+|..... +.. ...++.++|+|+|++++|..+ +..
T Consensus 128 ~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~~-~~~~~~n~giy~~~~~~l~~~-~~~ 190 (238)
T PRK13368 128 PISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DGE-SARYLKHVGIYAFRRDVLQQF-SQL 190 (238)
T ss_pred EcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CCC-CCceeEEEEEEEeCHHHHHHH-HcC
Confidence 5542 1 1344554 44567999999876521100 000 013589999999999999764 321
Q ss_pred CCCC-Cchhh-hhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHH
Q 010554 326 YPTS-NDFGS-EIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (507)
Q Consensus 326 ~~~~-~d~~~-dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ 370 (507)
.... .++.. +++ .++ ...++++|..+++|.|||||+||..|+..
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 191 PETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 1111 11222 445 454 45679999999999999999999999864
|
|
| >PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=189.47 Aligned_cols=243 Identities=16% Similarity=0.277 Sum_probs=159.4
Q ss_pred ceEEEEEcCCCCCcccCCccC-CCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHH-HHHHhcccCCCcccC
Q 010554 94 NVAAIILGGGAGTKLFPLTLR-AATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN-RHIARTYFGNGTNFG 171 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~-~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~-~~l~~~~~~~~~~~~ 171 (507)
+|.+||||||.||||+|+|.. +||+|+|++|..|||+++++.+...++.+.+|+|+.....+. +.+. .. .. .
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~-~~-~~---~- 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLR-QL-NK---L- 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHH-hc-CC---c-
Confidence 389999999999999999998 799999996633999999999998888888888887655443 3332 11 10 0
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC--HHHHHHHHH---HcCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHV---DRDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d--l~~ll~~h~---~~~a~~tl 246 (507)
. ..++.... .++||-|+..+..++.......+.-++|+++||+..-. |.+.+.... +.+..+|+
T Consensus 79 ~--~~ii~EP~---------~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~ 147 (478)
T PRK15460 79 T--ENIILEPA---------GRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTF 147 (478)
T ss_pred c--ccEEecCC---------CCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 0 13333222 15899998877666642100113568899999987432 555544432 23555555
Q ss_pred EEEEcCCCCCccceEEEECCC---------CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHH
Q 010554 247 SCAAVGESRASDYGLVKIDNM---------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV 317 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~~---------grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~i 317 (507)
...|... ...||+++.++. -+|.+|.|||.......+.- .-.+++|+|+|+|+.+.
T Consensus 148 GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~-------------~G~y~WNsGiF~~~a~~ 212 (478)
T PRK15460 148 GIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA-------------SGEYYWNSGMFLFRAGR 212 (478)
T ss_pred ecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH-------------cCCEEEecceeheeHHH
Confidence 5444333 246999987642 26999999998765433211 12479999999999998
Q ss_pred HHHHHHhhCCCC--------------Cch--h-hhhHHh--------hh--hcCcEEEEEeccEEEecCCHHHHHHHH
Q 010554 318 LFKLLRWRYPTS--------------NDF--G-SEIIPA--------AI--MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 318 L~~ll~~~~~~~--------------~d~--~-~dil~~--------li--~~~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
|...+++..|.- .++ . .+.++. ++ +..++.+.+.+--|-|+|++.++.+..
T Consensus 213 ~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 213 YLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 777666544420 010 0 122221 22 225688878777799999999998864
|
|
| >COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=150.35 Aligned_cols=218 Identities=16% Similarity=0.233 Sum_probs=148.9
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.|||||||.||||.|||...||+||.|.|+ |||+++++.|.++||++|+||++|..+++ ++|.+.| +
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy-------~--- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKY-------D--- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhc-------C---
Confidence 6799999999999999999999999999999 99999999999999999999999998876 6776544 2
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEE-EEEEcCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITI-SCAAVGE 253 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl-~~~~~~~ 253 (507)
|+++....-. .-..-.++..++++|+ +..|+.+|....-++ ++.+.....- ++.....
T Consensus 69 vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~~ 127 (231)
T COG4750 69 VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSGK 127 (231)
T ss_pred eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecCC
Confidence 6666432210 1256788889998884 567889999775553 2222111111 1111111
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHH---HHHHHHhhCCC--
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDV---LFKLLRWRYPT-- 328 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~i---L~~ll~~~~~~-- 328 (507)
...| .+..+.+|+|+++.-.-. ...+.+|+..|+... +..+++..+-.
T Consensus 128 --tnEw-~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 128 --TNEW-LLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --Ccee-EEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 1123 355677899998864221 257789999998763 44455543321
Q ss_pred -CCchhhhhHHhhhhcCcEEEEEec-cEEEecCCHHHHHHHHHHhh
Q 010554 329 -SNDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 329 -~~d~~~dil~~li~~~~V~~~~~~-gyw~dIgt~~~y~~An~~ll 372 (507)
..-|-.++.-.-+++.++++-..+ +--+.+++.++|.+....++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 112334455555666666665554 45778899999988777644
|
|
| >COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=160.28 Aligned_cols=242 Identities=18% Similarity=0.301 Sum_probs=160.2
Q ss_pred eEEEEEcCCCCCcccCCcc-CCCccceeecCcchhhHHHHHHHHh-cCCCEEEEEeccCchHH-HHHHHhcccCCCcccC
Q 010554 95 VAAIILGGGAGTKLFPLTL-RAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASL-NRHIARTYFGNGTNFG 171 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~-~~PK~LlPI~g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l-~~~l~~~~~~~~~~~~ 171 (507)
|.+||||||.||||+||+. ..||++|++.+...|++.++..+.. .+.++++|+|+..+..+ .+.+.+. +.. ...
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~--~~~-~~~ 78 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI--DIE-NAA 78 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh--hhc-ccc
Confidence 6899999999999999975 6999999996633999999999988 67899999999876543 3334320 000 111
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC--HHHHHHHHH---HcCCceEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD--YMDFIQSHV---DRDADITI 246 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d--l~~ll~~h~---~~~a~~tl 246 (507)
.++. ++.+ +.||-|+..+.-.+.. ...+.-++|+++||+..-. |.+.++... +.+..+|+
T Consensus 79 ----~ill--EP~g-------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTf 143 (333)
T COG0836 79 ----GIIL--EPEG-------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTF 143 (333)
T ss_pred ----ceEe--ccCC-------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1332 2211 4899999887655542 1223459999999988543 666665543 34554554
Q ss_pred EEEEcCCCCCccceEEEECCC------CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 247 SCAAVGESRASDYGLVKIDNM------GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~~------grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
...|... ...||+++..+. -+|.+|.|||.....+.+.- .-.+++|+|+|+|+...+.+
T Consensus 144 GI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~-------------sG~y~WNSGmF~Fra~~~l~ 208 (333)
T COG0836 144 GIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVE-------------SGEYLWNSGMFLFRASVFLE 208 (333)
T ss_pred ecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHH-------------cCceEeeccceEEEHHHHHH
Confidence 4444322 247999987541 27999999998765432211 12389999999999998777
Q ss_pred HHHhhCCCC-------------Cchh---hhh--------HHhhh--hcCcEEEEEeccEEEecCCHHHHHHHHH
Q 010554 321 LLRWRYPTS-------------NDFG---SEI--------IPAAI--MEHDVQAYIFRDYWEDIGTIKSFYEANM 369 (507)
Q Consensus 321 ll~~~~~~~-------------~d~~---~di--------l~~li--~~~~V~~~~~~gyw~dIgt~~~y~~An~ 369 (507)
.+++..|.- .++. .+. +.+++ +..++.+.+.+-.|-|+|++.++++...
T Consensus 209 e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 209 ELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 666554420 0110 111 11222 2367888888888999999999887653
|
|
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=159.09 Aligned_cols=234 Identities=15% Similarity=0.157 Sum_probs=154.2
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+| +.++.+.+.+++.+ ++
T Consensus 47 ~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VV-V~~~~e~I~~~~~~--------~~-- 108 (293)
T PLN02917 47 RVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIV-VATDDERIAECCRG--------FG-- 108 (293)
T ss_pred cEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEE-EECChHHHHHHHHH--------cC--
Confidence 5789999999999994 4999999999 99999999999876544433 34566777666641 11
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEE--EEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITI--SCA 249 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl--~~~ 249 (507)
++++...+.. ..||+++ ..+...++ ...+.++++.||. +....+..+++.+.+. +++++ ++.
T Consensus 109 -v~vi~~~~~~-------~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~ 174 (293)
T PLN02917 109 -ADVIMTSESC-------RNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVT 174 (293)
T ss_pred -CEEEeCCccc-------CCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEee
Confidence 2333211211 2488887 46666663 1246899999999 3345688999988654 33433 333
Q ss_pred EcCCCCCccceEEE--ECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 250 AVGESRASDYGLVK--IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 250 ~~~~~~~~~~g~v~--id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
+...+++.+||.++ .|++|+++.|..++-.+.... +++ .....+.++|+|+|+.+.|. .+....+
T Consensus 175 ~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~----------~~~--~~~i~~~n~Giy~f~~~~L~-~l~~l~~ 241 (293)
T PLN02917 175 SLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG----------KVN--PQFPYLLHLGIQSYDAKFLK-IYPELPP 241 (293)
T ss_pred ecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc----------ccc--cccceEEEEEEEEeCHHHHH-HHHcCCC
Confidence 34444577899886 687898776654322110000 000 11236889999999999998 4443322
Q ss_pred ---CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 328 ---TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 328 ---~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
+...++++++ .+-...+|.++..+.....|||++++..++..+.+
T Consensus 242 ~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 242 TPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 2455667766 33344678888877667799999999999998754
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=136.78 Aligned_cols=210 Identities=14% Similarity=0.144 Sum_probs=139.8
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCc-hHHHHHHHhcccCCCcccCCCe
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|||||||.|+||.. ..||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+..++. . . ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-----~--~---~~ 67 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLV-----A--R---AV 67 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhh-----c--C---Cc
Confidence 79999999999973 479999999999 9999999999998 8999999998764 33333232 1 0 01
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
++++. +. .+..++++.+...++ ..+.++++.||. +....+..+++.+++.+ +++++.+..
T Consensus 68 ~~~~~--~~---------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~ 129 (217)
T TIGR00453 68 PKIVA--GG---------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKAG--AAILALPVA 129 (217)
T ss_pred EEEeC--CC---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--cEEEeEecc
Confidence 33331 11 134577888776551 246899999998 33456788888876643 344444443
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCch
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~ 332 (507)
.++..+|++|.+..+.|+.. -....+ .|.|+...|.++++........
T Consensus 130 ------~~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~~~- 177 (217)
T TIGR00453 130 ------DTLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEGFE- 177 (217)
T ss_pred ------ceEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcCCC-
Confidence 34555566677877765321 123444 5999999998887643222222
Q ss_pred hhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHH
Q 010554 333 GSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (507)
Q Consensus 333 ~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ 370 (507)
..|....+. ...++..+..+..+.+|+|++||..|...
T Consensus 178 ~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 233332222 24678777777677899999999888753
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-14 Score=136.37 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=141.3
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCc-hHHHHHHHhcccCCCccc
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~ 170 (507)
..+.+||||||.|+||. ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+.+++. .. .
T Consensus 2 ~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~----~~---~ 70 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLL----AK---D 70 (227)
T ss_pred CceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhh----cc---C
Confidence 35789999999999995 3579999999999 99999999999865 899999998765 33322221 10 0
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
..+.++. .. .+.+++++.+...++ ..+.++++.||. +....+..+++.+.+.+ ..+++
T Consensus 71 --~~~~~~~--~~---------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~ 130 (227)
T PRK00155 71 --PKVTVVA--GG---------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILA 130 (227)
T ss_pred --CceEEeC--Cc---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEE
Confidence 1133331 11 256899998877663 146789999998 33456889999887654 33444
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.+..+ .+.. ++++|.+..+.+ .... .... +.|.|+.+.|.++++...+.
T Consensus 131 ~~~~~----~~~~--v~~~g~~~~~~~---r~~~---------------------~~~~-~p~~f~~~~l~~~~~~~~~~ 179 (227)
T PRK00155 131 VPVKD----TIKR--SDDGGGIVDTPD---RSGL---------------------WAAQ-TPQGFRIELLREALARALAE 179 (227)
T ss_pred Eeccc----cEEE--EcCCCceeecCC---hHHh---------------------eeee-CCccchHHHHHHHHHHHHhc
Confidence 44433 1222 355666665532 1110 1223 37999999998887653322
Q ss_pred CCchhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 329 SNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
. .+..+....+. ...++..+..+..+++|+|++||..|...+.+
T Consensus 180 ~-~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 180 G-KTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred C-CCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 1 22233222222 23567777766678899999999999876543
|
|
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-14 Score=134.82 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=140.3
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
.+||||||.|+||.+ ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+ . .. ..
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~-~----~~-~~ 70 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KY-G----LS-KV 70 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hc-c----cC-CC
Confidence 589999999999985 379999999999 99999999999976 99999999887655544331 11 0 00 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+.++... .+..++++.+...+++ ...+.++++.||+ +....+..+++.+...++ .+.+.+..
T Consensus 71 ~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~ 134 (218)
T cd02516 71 VKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVT 134 (218)
T ss_pred eEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEecc
Confidence 3333211 2457888888776631 1246789999998 334557889998866543 33444433
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCch
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~ 332 (507)
+ ++...|++|.+..+.+..+ -....++ ++|+.+.|.+++....+... +
T Consensus 135 ~------~~~~~~~~g~~~~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~~~-~ 182 (218)
T cd02516 135 D------TIKRVDDDGVVVETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEEGE-E 182 (218)
T ss_pred c------cEEEecCCCceeecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhcCC-C
Confidence 2 2334677888888876321 1355677 89999999988875433322 2
Q ss_pred hhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHH
Q 010554 333 GSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYE 366 (507)
Q Consensus 333 ~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~ 366 (507)
.+|...-+.+. .++..+..+..-+||+||+||..
T Consensus 183 ~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 183 FTDDASLVEAAGGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhh
Confidence 34433222222 46766665555669999999954
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=140.59 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=139.2
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
|.++.+||||||.|+||. ...||+++|++|+ |||+|+++.+.+++ +++|+|++++......+.+. . .+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~----~---~~ 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL----P---EI 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc----c---cC
Confidence 556899999999999994 4689999999999 99999999999987 79999999876554433321 1 11
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHcCCceEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~~a~~tl~~ 248 (507)
. .+.++. .. .+..++++.++..++ .+.++|..||. +.+ ..+..+++..++. +.++.+
T Consensus 72 ~--~v~~v~--gG---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~ 130 (378)
T PRK09382 72 K--FVTLVT--GG---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPA 130 (378)
T ss_pred C--eEEEeC--CC---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEE
Confidence 1 133331 11 246788998887764 36788999986 333 4467777766543 567777
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.++.+ ...|+...+|. ..+..+ ++|+... .+.|.+..+ .
T Consensus 131 ~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~---------------------------------~~~l~~a~~----~ 169 (378)
T PRK09382 131 LPVAD--TLKRANETVDR-EGLKLI-QTPQLSR---------------------------------TKTLKAAAD----G 169 (378)
T ss_pred EEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC---------------------------------HHHHHHHHh----C
Confidence 77766 34566555553 355544 7776432 111222111 1
Q ss_pred CCchhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 329 SNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
..+ .+|..+.+. ...+|..+..+..|.+|++|+||..|+..+..
T Consensus 170 ~~~-~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 170 RGD-FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCC-cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 222 244444433 34688888888899999999999999987643
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-13 Score=129.89 Aligned_cols=215 Identities=19% Similarity=0.235 Sum_probs=137.8
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.|||||+|.|+||. .|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ + +.
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~-~-------~~ 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK-Y-------GA 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH-h-------CC
Confidence 3679999999999994 4999999999 99999999999987 788887763 4445554431 1 10
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
.+.+.......+ ...|+.++++.++..+++. ....+.++++.||+ +...++.++++.|...+++.++.+.+
T Consensus 64 -~~~~~~~~~~~~-----~~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 64 -EVPFLRPAELAT-----DTASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred -CceeeCChHHCC-----CCCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 011221111000 0137899999988777521 01136899999999 55677899999998877887777766
Q ss_pred cCCCCCccceEEEECCCC-cEEEEEeC--CCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 251 VGESRASDYGLVKIDNMG-RIAQFAEK--PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~g-rV~~~~eK--p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
..+. ..++... +++| .+..+.++ +...+. ...+..++|+|+++++.|.+.
T Consensus 137 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~q~~------------------~~~~~~n~~~y~~~~~~~~~~------ 189 (223)
T cd02513 137 FHRF--PWRALGL-DDNGLEPVNYPEDKRTRRQDL------------------PPAYHENGAIYIAKREALLES------ 189 (223)
T ss_pred cCcC--cHHheee-ccCCceeccCcccccCCcCCC------------------hhHeeECCEEEEEEHHHHHhc------
Confidence 5431 2233322 2223 22222111 100000 012567889999999987431
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHH
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMA 370 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~ 370 (507)
.. + -..++..|..+. .-.||+|++||..|...
T Consensus 190 -~~-~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 190 -NS-F---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred -CC-c---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 00 0 156788887776 58999999999888653
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-14 Score=130.60 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.|||||||+|+||.+ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999975 79999999999 9999999999999999999999988888877775211
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEE
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
..+.. +. -.|...++..++..+. ..++|++++||+.+ ...+..+++.+...+...+..+.
T Consensus 65 ~~~~~---~~-------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 65 KDYKN---AS-------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred cEEEe---cC-------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 11221 11 1477778887765432 24789999999844 56688899988766555444443
|
At this time this gene appears to be present only in Archea |
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-13 Score=129.10 Aligned_cols=228 Identities=15% Similarity=0.204 Sum_probs=141.5
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
+||+|+|.|+||. +|+|+|++|+ |||.|+++++..+++++|+|++.. +.+.+++. . ++ ++
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~-------~g---~~ 61 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-K-------FG---IE 61 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-H-------cC---CE
Confidence 7999999999994 6999999999 999999999999899999998864 34555543 1 22 22
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
++...+. ...|+.... .+...+.. ...+.++++.||. +. ...+.++++.+++.+++++.++.+..+.
T Consensus 62 ~v~~~~~-------~~~Gt~r~~-~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~ 130 (238)
T TIGR00466 62 VCMTSKH-------HNSGTERLA-EVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDA 130 (238)
T ss_pred EEEeCCC-------CCChhHHHH-HHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCH
Confidence 2211111 012544333 33332310 1235688899999 33 4557888888866667777777776541
Q ss_pred CC---ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCc
Q 010554 255 RA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (507)
Q Consensus 255 ~~---~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d 331 (507)
.. .+...+..|.+|+...|...+-......+ .....|+. ..++...|+|.|+.++|.++.... ++...
T Consensus 131 ~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~le 201 (238)
T TIGR00466 131 EEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVLE 201 (238)
T ss_pred HHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCccc
Confidence 11 11333444777888777654321110000 00122221 125778999999999999887642 22111
Q ss_pred h--hhhhHHhhhhcCcEEEEEeccE-EEecCCHHHH
Q 010554 332 F--GSEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSF 364 (507)
Q Consensus 332 ~--~~dil~~li~~~~V~~~~~~gy-w~dIgt~~~y 364 (507)
- .-|.|..+-...+|.+...+.. -..|+||+|+
T Consensus 202 ~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 202 EIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred ccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1 1244555556788988888755 4589999987
|
|
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=125.66 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=92.8
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
|||||||.|+||. .||+|+|++|+ |||+|+++.+.+.++++|+|++++ +.+..++. +++ ++
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~--------~~~---~~ 61 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE--------RYG---IK 61 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT--------TTT---SE
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh--------ccC---ce
Confidence 7999999999997 49999999999 999999999999999999999988 34444442 112 44
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEE
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
++.... |..|+.++|+.+...+. ..++|++++||+.+ ...+..+++.+.+.++++++..
T Consensus 62 ~v~~~~--------~~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 62 VVVDPE--------PGQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEE-ST--------SSCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEecc--------ccCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 443322 12599999999987662 35899999999944 4457899999887777765544
|
... |
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-13 Score=124.48 Aligned_cols=119 Identities=13% Similarity=0.223 Sum_probs=88.6
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVE 176 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~ 176 (507)
+||||||.|+||. .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+.+++.+ .++ +.
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~---v~ 65 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSN---IT 65 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCC---eE
Confidence 7999999999997 48999999999 99999999999999999999999887665444321 122 45
Q ss_pred EecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ccCCHHHHHHHHHHcCCce
Q 010554 177 VLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADI 244 (507)
Q Consensus 177 vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i--~~~dl~~ll~~h~~~~a~~ 244 (507)
++.... +..|++++++.++.+ . ...+.++++.||+- ....+..+++.+...+.++
T Consensus 66 ~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 66 LVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred EEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 443221 225899999988752 1 12478999999993 3456788888877665543
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=126.46 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchH-HHHHHHhcccCCCcccCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSAS-LNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~-l~~~l~~~~~~~~~~~~~ 172 (507)
+.+||||||.|+||. ...||+|+|++|+ |||.|+++++.++ .+++|+|+++..... +.+.+. .| + +..
T Consensus 3 ~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~-~~-~----~~~ 72 (230)
T PRK13385 3 YELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMK-QL-N----VAD 72 (230)
T ss_pred eEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHH-hc-C----cCC
Confidence 689999999999996 3579999999999 9999999999876 589999999764422 223332 22 1 101
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
..++++... .+..++++.++..++ ..+.++++.||. +.. ..+.++++.+.+.++. +.+.+
T Consensus 73 ~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~ 134 (230)
T PRK13385 73 QRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVE 134 (230)
T ss_pred CceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEe
Confidence 123443210 133588888876663 135578889999 334 4478888888766543 33334
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
+.+ .+... ++|.+....+ . .. .+.--+.|.|+.+.|.+..+.......
T Consensus 135 ~~d------ti~~~-~~~~~~~~i~--r-~~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~~~ 182 (230)
T PRK13385 135 VKD------TVKRV-KDKQVIETVD--R-NE----------------------LWQGQTPQAFELKILQKAHRLASEQQF 182 (230)
T ss_pred ccc------eEEEE-cCCeeEeccC--H-HH----------------------HhhhcCCceeeHHHHHHHHHHHHhcCC
Confidence 332 12222 2354433322 1 11 122234689999888877664222222
Q ss_pred chhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 331 DFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 331 d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
+.++....+. ...+|..+.-+.....|+||+|+..|...+.
T Consensus 183 -~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 183 -LGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred -CcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 2333222222 3467777777778899999999999987664
|
|
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=121.00 Aligned_cols=120 Identities=18% Similarity=0.336 Sum_probs=89.5
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+.+||||||.|+||.+ ||+|+|++|+ |||+|+++.+...++++|+|+++++...+.+++. .++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~--- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA--------GLP--- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc--------CCC---
Confidence 4689999999999985 9999999999 9999999999999999999999887655543331 112
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCc
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDAD 243 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~ 243 (507)
+.++.... +..|++++++.++..+.. ..+.++++.||+ +....+..+++.+...+++
T Consensus 64 ~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33332221 125999999999877641 247899999999 3345678888877654443
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-13 Score=130.50 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=78.1
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-ceeee-ce
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-NCRIK-DA 407 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~-~s 407 (507)
.+| .|.+|.+++.+ ++.++|||.|+ ++|+++|+++|..... ..............+...+.|+ .+.|. .+
T Consensus 28 ~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~-~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v 99 (231)
T TIGR03532 28 VDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRI-ENDRRNSAIPLLDLKNINARIEPGAIIRDQV 99 (231)
T ss_pred ccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEE-eecccccccccccccccccEECCCCEEeCCe
Confidence 445 57888888766 88899999999 9999999999976421 0000000000000111222333 12222 34
Q ss_pred EEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec--------CCCCc
Q 010554 408 IISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN--------KDDVQ 477 (507)
Q Consensus 408 iIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~--------~~~~~ 477 (507)
.||++|.|+ ++.|... +.++++ |.|+.+++|. +|+||++|.||.++.|.+ ...++
T Consensus 100 ~IG~~~~I~~~~~I~~~------------~~IG~~---~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IG 164 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIG------------AEIGEG---TMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIE 164 (231)
T ss_pred EECCCCEEecCcccCCC------------eEECCC---CEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEEC
Confidence 555555554 3333211 122444 4455555553 555555555555555543 12233
Q ss_pred cCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 478 EADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 478 e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+......+..|.+| ++||++++|++|++
T Consensus 165 d~v~IG~gsvI~~g-~~Ig~~~~Igagsv 192 (231)
T TIGR03532 165 DNVLIGANAVILEG-VRVGKGAVVAAGAI 192 (231)
T ss_pred CCcEECCCCEEcCC-CEECCCCEECCCCE
Confidence 33333333444444 55666666666654
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-11 Score=119.24 Aligned_cols=223 Identities=13% Similarity=0.099 Sum_probs=133.7
Q ss_pred CCCCCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCC
Q 010554 88 RRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGN 166 (507)
Q Consensus 88 ~~~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~ 166 (507)
..+.+..+.+||||||.|+||. ...||+++|++|+ |||+|+++.+.+. ++++|+|++++......+.+.+.+
T Consensus 18 ~~~~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~--- 90 (252)
T PLN02728 18 AVVKEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI--- 90 (252)
T ss_pred cccccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc---
Confidence 4445667899999999999996 3589999999999 9999999999984 899999999876544333322211
Q ss_pred CcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCc--e-ec-cCCHHHHHHHHHHcCC
Q 010554 167 GTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGD--H-LY-RMDYMDFIQSHVDRDA 242 (507)
Q Consensus 167 ~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD--~-i~-~~dl~~ll~~h~~~~a 242 (507)
+ ..+.+.. .. .+..++++.++..++ .+..+|+.+| . +. ...+..+++...+.++
T Consensus 91 ----~-~~i~~v~--gg---------~~r~~SV~~gl~~l~------~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga 148 (252)
T PLN02728 91 ----D-VPLKFAL--PG---------KERQDSVFNGLQEVD------ANSELVCIHDSARPLVTSADIEKVLKDAAVHGA 148 (252)
T ss_pred ----C-CceEEcC--CC---------CchHHHHHHHHHhcc------CCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe
Confidence 1 1133221 11 134677888876663 1334566666 3 33 3346788887777664
Q ss_pred ceEEEEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHH
Q 010554 243 DITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL 322 (507)
Q Consensus 243 ~~tl~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll 322 (507)
.+...++.+ .+..+++++.|.. .+....... ...| ..|+.+.|.+..
T Consensus 149 --~i~~~~~~d------tik~v~~~~~v~~---t~~R~~l~~--------~QTP--------------Q~F~~~~l~~a~ 195 (252)
T PLN02728 149 --AVLGVPVKA------TIKEANSDSFVVK---TLDRKRLWE--------MQTP--------------QVIKPELLRRGF 195 (252)
T ss_pred --EEEeecchh------hEEEecCCCceee---ccChHHeEE--------EeCC--------------ccchHHHHHHHH
Confidence 345555433 2333444554433 232221100 0111 357777776665
Q ss_pred HhhCCCCCchhhhhHHhh-hhcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 323 RWRYPTSNDFGSEIIPAA-IMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 323 ~~~~~~~~d~~~dil~~l-i~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
+........ .+|-...+ ....+|....-+..-+-|.||+|+..|...+..
T Consensus 196 ~~~~~~~~~-~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 196 ELVEREGLE-VTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHHHhcCCC-cCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 543222222 23322221 123567766555567889999999999876543
|
|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-12 Score=116.58 Aligned_cols=107 Identities=12% Similarity=0.181 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+.+||||||.|+||.+ ||+|+|++|+ |||+|+++.+... +++|+|++++..+.. . .++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~~---~---------~~~--- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQERY---A---------LLG--- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHHH---h---------hcC---
Confidence 4689999999999983 9999999999 9999999999987 899999998875431 1 111
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHH
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSH 237 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h 237 (507)
++++.... +..|..++++.++..++ .+.++++.||+-+ + ..+..+++.+
T Consensus 59 ~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 33333211 23589999999876653 4789999999933 3 4467777665
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.35 E-value=8e-12 Score=106.42 Aligned_cols=99 Identities=31% Similarity=0.509 Sum_probs=83.0
Q ss_pred Cceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEE
Q 010554 396 PTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 470 (507)
Q Consensus 396 p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i 470 (507)
|++++ +++|++|+||++|.|+++.|++|++ ..++.+++| .|+++++ +.||++++|.+|+|+++++||+++++
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~---~~Ig~~~~i~~siig~~~~Ig~~~~v 77 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN---VGIGRNAVIRRAIIDKNVVIPDGVVI 77 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC---CEECCCCEEEeEEECCCCEECCCCEE
Confidence 45665 5889999999999999889999999 478999999 4999999 89999999999999999999999999
Q ss_pred ecCCCCccCCCCCCCeEEcCCeEEEcCCCEe
Q 010554 471 VNKDDVQEADRPELGFYIRSGITIIMEKATI 501 (507)
Q Consensus 471 ~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i 501 (507)
.+.... + ...+++..+|+++|++++++
T Consensus 78 ~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 78 GGDPEE-D---RARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred CCCccc-c---cccceEcCCeEEEEecccCC
Confidence 885222 1 13556668999999998764
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-11 Score=113.08 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=81.3
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|..|.+||||||.|+||. ..||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ . . ++
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~-~-------~~ 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----A-A-------FG 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----H-h-------cC
Confidence 346899999999999995 379999999999 99999999998 78999999987653322 1 1 11
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHc
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDR 240 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~ 240 (507)
+.++.... . ...|+.++++.++...+ .+.++++.||+ +.. ..+..+++.+.+.
T Consensus 63 ---~~~v~~~~-~------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 63 ---LPVIPDSL-A------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred ---CcEEeCCC-C------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 23332111 0 12488889988876442 47899999999 444 3467777655433
|
|
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-11 Score=109.55 Aligned_cols=122 Identities=18% Similarity=0.310 Sum_probs=94.1
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
.+..+.+||||||.|+||. .+|-|+|+.|+ ||++++++...++++++++|+++|.......... .
T Consensus 2 ~~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----~----- 66 (199)
T COG2068 2 RPSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----A----- 66 (199)
T ss_pred CCcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh----c-----
Confidence 3567899999999999998 89999999999 9999999999999999999999997322221111 1
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHc
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDR 240 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~ 240 (507)
...++++... +|.+|.+.+++.+...+.. ..+-++++.||+ +...++..+++.++.+
T Consensus 67 -~~~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 67 -QLGVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred -cCCeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 1125565433 2558999999998877652 125799999999 5567788888887766
|
|
| >KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.4e-12 Score=132.03 Aligned_cols=83 Identities=14% Similarity=0.364 Sum_probs=71.8
Q ss_pred ccCCCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCC
Q 010554 388 YTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDK 460 (507)
Q Consensus 388 ~~~~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~ 460 (507)
.....+..+++|+ +++|.||+||.||.|+ +++|.+|.| +.||.+++|. ++|+++ +.|++||++. +||||.
T Consensus 331 ~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---v~i~~~~~l~~g~vl~~ 407 (673)
T KOG1461|consen 331 GANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---VKIGEGAILKPGSVLGF 407 (673)
T ss_pred cceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC---cEeCCCcccCCCcEEee
Confidence 3344556677887 6999999999999999 899999999 5899999995 999999 9999999995 799999
Q ss_pred CCEECCCcEEecC
Q 010554 461 NVKIGKDVVIVNK 473 (507)
Q Consensus 461 na~Ig~~~~i~~~ 473 (507)
++++|++-++...
T Consensus 408 ~VVv~~~~~l~~n 420 (673)
T KOG1461|consen 408 GVVVGRNFVLPKN 420 (673)
T ss_pred eeEeCCCcccccc
Confidence 9999999888765
|
|
| >COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-11 Score=108.43 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.+||+|||+||||. ..=|||++++|+ |||+|+++.+.+ .+++|+++++.+.-...+|+.+. +
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~--------g--- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV--------G--- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc--------C---
Confidence 579999999999998 245999999999 999999999998 88999999999998898888632 2
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHHH
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHV 238 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h~ 238 (507)
++++. ++++ |--.-|+.+...+. .++|++++|+.+ + ..+..+++.+.
T Consensus 64 v~vi~---tpG~-------GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 VKVIE---TPGE-------GYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ceEEE---cCCC-------ChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 56663 3322 55566776665553 599999999955 3 33566666554
|
|
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-10 Score=106.74 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
..+.+||||||.|+||. .+|+|+|++|+ |||+|+++.+.. .+++|+|++++. +.. ..+. ..
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~-~~~~ivvv~~~~-~~~-~~~~----~~------ 66 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAA-CADEVYIITPWP-ERY-QSLL----PP------ 66 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHh-hCCEEEEECCCH-HHH-Hhhc----cC------
Confidence 36889999999999996 47999999999 999999999975 478998888642 211 1111 10
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHHH
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHV 238 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h~ 238 (507)
.+.++...+ +..|..++++.++..++ .+.++|+.||+-+ . ..+..+++.+.
T Consensus 67 -~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 -GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 134443221 23699999999987764 3789999999933 3 34567777654
|
|
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-09 Score=105.43 Aligned_cols=215 Identities=16% Similarity=0.232 Sum_probs=139.4
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
|||+|+|.++||. .|.+.|++|+ |||.|+++.+.+++ +++|+|.+. .+.+.+... .| +. .+
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~-~~-------g~-~v 63 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAK-SY-------GA-SV 63 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHH-Hc-------CC-Ee
Confidence 7999999999994 4999999999 99999999999986 677777554 344544332 22 21 12
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.+..+.... .+..|+.++++.+...+++. ...+.|+++.+|.-+ ..++..+++.+++.+++..+.+.+...
T Consensus 64 ~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~ 136 (222)
T TIGR03584 64 PFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAF 136 (222)
T ss_pred EEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCC
Confidence 122111100 11258899999998777421 124679999999944 457899999998877888888777543
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchh
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~ 333 (507)
. + .+. ...+++|++..+..... ... .++. ...+..+.++|+++++.|.+ . . .+
T Consensus 137 ~-~-~~~-~~~~~~g~~~~~~~~~~-~~~-------------rQd~-~~~y~~nga~y~~~~~~~~~---~----~-~~- 189 (222)
T TIGR03584 137 P-I-QRA-FKLKENGGVEMFFPEHF-NTR-------------SQDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI- 189 (222)
T ss_pred C-h-HHh-eEECCCCcEEecCCCcc-cCC-------------CCCC-chheeeCCeEEEEEHHHHHh---c----C-Cc-
Confidence 1 1 122 23446677665542110 000 0000 01256799999999998742 1 1 11
Q ss_pred hhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHh
Q 010554 334 SEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 334 ~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~l 371 (507)
-..++..|..+. ...||+|++||..|...+
T Consensus 190 --------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 --------FSPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred --------cCCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 135678888775 589999999999987643
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=104.15 Aligned_cols=54 Identities=17% Similarity=0.375 Sum_probs=48.3
Q ss_pred CCCCceEEEEEcCCCCCcccCCccCCCccceeecC-cchhhHHHHHHHHhcCCCEEEEEecc
Q 010554 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAG-CYRLIDIPMSNCINSGINKIFVLTQF 150 (507)
Q Consensus 90 ~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g-~ypLId~~L~~l~~~Gi~~I~Vv~~~ 150 (507)
+.+.++.+||||||.++||. .+|+|+|++| + |||+|+++++... +++|+|++++
T Consensus 4 ~~~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 4 PMIDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred ccccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc
Confidence 44567899999999999995 5899999999 9 9999999999876 8999998875
|
|
| >PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.3e-10 Score=114.85 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=84.3
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
+++++.+||||||.|+||. ..||+|+|++|+ |||+|+++.+.. .+++|+|+++...+.+.+++ ..
T Consensus 2 ~~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~-----~~---- 66 (366)
T PRK14489 2 QISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLF-----PG---- 66 (366)
T ss_pred CCCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhc-----cC----
Confidence 4567899999999999995 379999999999 999999999975 59999997766544332221 11
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccCC-HHHHHHHHHHcCCc
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~~d-l~~ll~~h~~~~a~ 243 (507)
+.++..... + ..|..++++.++..++ .+.++|+.||+ +...+ +..+++.+++.+++
T Consensus 67 ----~~~i~d~~~-g------~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 67 ----LPVYPDILP-G------FQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred ----CcEEecCCC-C------CCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 122221111 0 1488888988876653 36799999998 33433 56777765555554
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=103.22 Aligned_cols=110 Identities=15% Similarity=0.286 Sum_probs=75.6
Q ss_pred CCCceec-ceeee-ceEEcCCcEEc-cceEe-eeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEEC
Q 010554 394 LPPTKID-NCRIK-DAIISHGCFLR-ECTVE-HSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 465 (507)
Q Consensus 394 ~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~-~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig 465 (507)
.+.+.+. ++.|. +++||++|.|+ ++.|. +++| ..++.+++|. ++++++ +.|++++++.+|+|++++.|+
T Consensus 21 g~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~---~~I~~~~~i~~siIg~~~~I~ 97 (163)
T cd05636 21 GEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG---TKVPHLNYVGDSVLGENVNLG 97 (163)
T ss_pred cCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC---CEeccCCEEecCEECCCCEEC
Confidence 3334443 35454 57888888886 67776 4666 3678888884 888999 899999999999999999999
Q ss_pred CCcEEecC------------------------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 466 KDVVIVNK------------------------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 466 ~~~~i~~~------------------------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+++.+.+. ..+++......+..|..| ++||+++.|++|+++
T Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g-~~ig~~~~i~agsvV 162 (163)
T cd05636 98 AGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPG-VKIGPGSWVYPGCVV 162 (163)
T ss_pred CCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCC-cEECCCCEECCCcEe
Confidence 99999763 233344444444444445 556666666666553
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.7e-10 Score=103.97 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=84.3
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
.+||||||.|+||. .+|.|++++|+ |||+|+++.+...++++|+|++++..+.+ +.+.+.... . ..+
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~~~---~---~~~ 68 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYLLA---D---ERI 68 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhhhc---C---CCe
Confidence 58999999999997 37999999999 99999999988889999999998765432 111111111 0 114
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-cc-CCHHHHHHHHHHcCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YR-MDYMDFIQSHVDRDA 242 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~-~dl~~ll~~h~~~~a 242 (507)
+++.... |..|.+.+++.++..+.+ ...+.++++.||+- .. ..+..+++.......
T Consensus 69 ~~~~~~~--------~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 69 MLVCCRD--------ACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred EEEECCC--------hhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 4432221 235888999998776531 13478999999993 33 345677766544333
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-10 Score=105.54 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+.+||||||.|+||. .+||+|+|++|+ |||+|+++++.. ++++|+|++++..+. +... .++
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-------~~~--- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQA-------GFG--- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-------cCC---
Confidence 468999999999997 369999999999 999999999976 599999988764321 1110 111
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccCC-HHHHHHHHHHcCCc
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMD-YMDFIQSHVDRDAD 243 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~~d-l~~ll~~h~~~~a~ 243 (507)
+.++.... .+..|+.++|+.++..++ .+.++++.||+ +...+ +..+++.+.+.++.
T Consensus 62 ~~~i~~~~-------~~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 119 (186)
T TIGR02665 62 LPVVPDAL-------ADFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDAD 119 (186)
T ss_pred CcEEecCC-------CCCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCc
Confidence 23333211 123699999999987663 47899999999 44444 56776665443443
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=91.35 Aligned_cols=75 Identities=17% Similarity=0.443 Sum_probs=64.2
Q ss_pred CCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 395 PPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 395 ~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.+.|+ ++.|.+++|+++|.|+ +++|++|+| +++ +.||++++|.+|+|++++.|++++.+.+
T Consensus 4 ~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i-------------~~~---~~ig~~~~l~~svi~~~~~i~~~~~v~~ 67 (81)
T cd04652 4 ENTQVGEKTSIKRSVIGANCKIGKRVKITNCVI-------------MDN---VTIEDGCTLENCIIGNGAVIGEKCKLKD 67 (81)
T ss_pred CCCEECCCCEEeCcEECCCCEECCCCEEeCcEE-------------eCC---CEECCCCEEeccEEeCCCEECCCCEEcc
Confidence 445665 4777888999999997 678888776 888 8999999999999999999999999976
Q ss_pred CCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 473 KDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 473 ~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
++||++++|++++
T Consensus 68 --------------------~ii~~~~~i~~~~ 80 (81)
T cd04652 68 --------------------CLVGSGYRVEAGT 80 (81)
T ss_pred --------------------CEECCCcEeCCCC
Confidence 6899999999886
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.6e-09 Score=99.38 Aligned_cols=211 Identities=14% Similarity=0.184 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+.|||||||.|+||. ...||.+++++|+ |+|.|+|+.+.+. .+++|+|++........+.+... .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------~ 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------K 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH----------T
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC----------C
Confidence 468999999999998 4689999999999 9999999999884 79999999987664433333221 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce---ec-cCCHHHHHHHHHHcCCceEEEEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH---LY-RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~---i~-~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+.++.-. ..-.++++.++..+.+ ..+++++. |- +. ...+.++++..++ +....+...
T Consensus 67 ~v~iv~GG-----------~tR~~SV~ngL~~l~~-----~~d~VlIH-DaaRPfv~~~~i~~~i~~~~~-~~~aai~~~ 128 (221)
T PF01128_consen 67 KVKIVEGG-----------ATRQESVYNGLKALAE-----DCDIVLIH-DAARPFVSPELIDRVIEAARE-GHGAAIPAL 128 (221)
T ss_dssp TEEEEE-------------SSHHHHHHHHHHCHHC-----TSSEEEEE-ETTSTT--HHHHHHHHHHHHH-TCSEEEEEE
T ss_pred CEEEecCC-----------hhHHHHHHHHHHHHHc-----CCCEEEEE-ccccCCCCHHHHHHHHHHHHh-hcCcEEEEE
Confidence 25555311 1345788888777762 22444443 33 22 2235777777655 133455566
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEE-EEEeHHHHHHHHHhhCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV-YVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi-yif~~~iL~~ll~~~~~~ 328 (507)
++.+ .+...+++|.|....+. . .+..+.. ..|+.+.|.+..++....
T Consensus 129 p~~D------Tik~v~~~~~v~~tldR---~-----------------------~l~~~QTPQ~F~~~~l~~a~~~a~~~ 176 (221)
T PF01128_consen 129 PVTD------TIKRVDDDGFVTETLDR---S-----------------------KLWAVQTPQAFRFELLLEAYEKADEE 176 (221)
T ss_dssp E-SS------EEEEESTTSBEEEEETG---G-----------------------GEEEEEEEEEEEHHHHHHHHHTHHHH
T ss_pred eccc------cEEEEecCCcccccCCH---H-----------------------HeeeecCCCeecHHHHHHHHHHHHhc
Confidence 6554 35566767877765421 1 1222221 478888887776643221
Q ss_pred CCchhhh--hHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 329 SNDFGSE--IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 329 ~~d~~~d--il~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
...+..| ++.. -..+|+...-+..-+-|.+|+|+..|...+
T Consensus 177 ~~~~tDdasl~~~--~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 177 GFEFTDDASLVEA--AGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp THHHSSHHHHHHH--TTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CCCccCHHHHHHH--cCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 1222222 2211 246666665555677899999999998765
|
The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B .... |
| >COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-08 Score=97.53 Aligned_cols=219 Identities=17% Similarity=0.170 Sum_probs=133.2
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHH-HHHHHhcccCCCccc
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASL-NRHIARTYFGNGTNF 170 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l-~~~l~~~~~~~~~~~ 170 (507)
..+.+||||||.|+||.. ..||.+++++|+ |||+|+++.+..+ .|++|+|+++...... .++.. + .
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------~ 70 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------S 70 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------c
Confidence 457899999999999995 899999999999 9999999999886 6899999998744332 22221 1 0
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce----eccCCHHHHHHHHHHcCCceEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH----LYRMDYMDFIQSHVDRDADITI 246 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~----i~~~dl~~ll~~h~~~~a~~tl 246 (507)
....++++.-. ..-.++++..+..+.. ..++++++. |- +..-.+.++++...+.+ +.+
T Consensus 71 ~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~----~~~~~VlvH-DaaRPf~~~~~i~~li~~~~~~~--aai 132 (230)
T COG1211 71 ADKRVEVVKGG-----------ATRQESVYNGLQALSK----YDSDWVLVH-DAARPFLTPKLIKRLIELADKYG--AAI 132 (230)
T ss_pred cCCeEEEecCC-----------ccHHHHHHHHHHHhhc----cCCCEEEEe-ccccCCCCHHHHHHHHHhhccCC--cEE
Confidence 11235555321 1356888888777752 123444443 33 22334677774433333 455
Q ss_pred EEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC
Q 010554 247 SCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (507)
Q Consensus 247 ~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~ 326 (507)
...|+.+ .+...+++|.|.+...... .-. ...| ..|+.+.|.+.++...
T Consensus 133 ~alpv~D------Tik~~~~~~~i~~t~~R~~---l~~--------~QTP--------------Q~F~~~~L~~a~~~a~ 181 (230)
T COG1211 133 LALPVTD------TLKRVDADGNIVETVDRSG---LWA--------AQTP--------------QAFRLELLKQALARAF 181 (230)
T ss_pred EEeeccC------cEEEecCCCCeeeccChhh---hhh--------hhCC--------------ccccHHHHHHHHHHHH
Confidence 6666654 3444555666665532211 100 1112 3577777777766543
Q ss_pred CCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 327 PTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 327 ~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
....++..|.--......++....-+-+-+-|.+|+|+.-|+..+-
T Consensus 182 ~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 182 AEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred hcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhc
Confidence 3333333332111112567776666667899999999999987654
|
|
| >cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-09 Score=106.60 Aligned_cols=214 Identities=19% Similarity=0.289 Sum_probs=130.4
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhcC------------CCEEEEEec-cCchHHH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINSG------------INKIFVLTQ-FNSASLN 156 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~G------------i~~I~Vv~~-~~~~~l~ 156 (507)
.++.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ + .++|+|+ +..+.+.
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~ 88 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETR 88 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHH
Confidence 4789999999999999 678999999998 68 99999999998742 4 3567777 7788898
Q ss_pred HHHHhc-ccCCCcc----cCCCeEEEecCccCC----CCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCcee
Q 010554 157 RHIART-YFGNGTN----FGDGFVEVLAATQTP----GESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHL 225 (507)
Q Consensus 157 ~~l~~~-~~~~~~~----~~~~~V~vl~~~q~~----~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~gD~i 225 (507)
+++.+. ||+.... |.+..+-.+..+... ...-.-.|.|.||-...... .+++....+.+.+.+.+-|.+
T Consensus 89 ~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~ 168 (323)
T cd04193 89 KFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI 168 (323)
T ss_pred HHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcc
Confidence 888753 3443110 111111111100000 00001235688887665422 344444567899999999995
Q ss_pred -ccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEE-ECCCCcEEEEEeCCCccccccccccccccCCCccccccCC
Q 010554 226 -YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCP 303 (507)
Q Consensus 226 -~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (507)
...---.++-.|..+++++.+-+.+...+. +.-|.+. .|..-+|+++.|-|....... .-+.. | ..
T Consensus 169 L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~~~g~-l---------~f 236 (323)
T cd04193 169 LVKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-DADGE-L---------QY 236 (323)
T ss_pred cccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-CcCCc-E---------ec
Confidence 433224678888899999888766554321 2345544 343335667776654332110 00000 0 11
Q ss_pred ceeeeEEEEEeHHHHHHHHH
Q 010554 304 YVASMGVYVFKKDVLFKLLR 323 (507)
Q Consensus 304 ~l~~~Giyif~~~iL~~ll~ 323 (507)
+..+..+.+|+.+.|.++++
T Consensus 237 ~~~ni~~~~fsl~fl~~~~~ 256 (323)
T cd04193 237 NAGNIANHFFSLDFLEKAAE 256 (323)
T ss_pred ccchHhhheeCHHHHHHHHh
Confidence 34455677888888887765
|
UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.8e-09 Score=100.33 Aligned_cols=115 Identities=23% Similarity=0.260 Sum_probs=78.3
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCc--hHHHHHHHhcccCCCcccCCC
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNS--ASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~--~~l~~~l~~~~~~~~~~~~~~ 173 (507)
|||||+|.++||. +|.|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++.. .+
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~--------~~-- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK--------LG-- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH--------cC--
Confidence 7999999999994 4999999999 99999999999987 899999998765 455544431 11
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADIT 245 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~t 245 (507)
++++.... + + .+......++. ...+.++++.||+-+ ...+.++++.++..+.+++
T Consensus 65 -v~~v~~~~--------~--~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 -VKVFRGSE--------E--D---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred -CeEEECCc--------h--h---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 33432111 0 1 12111112221 124679999999933 4557899988877666654
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=106.67 Aligned_cols=114 Identities=9% Similarity=0.146 Sum_probs=76.2
Q ss_pred CCCCCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCC
Q 010554 88 RRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNG 167 (507)
Q Consensus 88 ~~~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~ 167 (507)
.++++..+.+||||||.|+||. .+|+|+|++|+ |||+|+++.+.. .+++|+|+++...... +. .
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~-~~~~vvV~~~~~~~~~---~~-~----- 231 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRP-HCQEVFISCRAEQAEQ---YR-S----- 231 (369)
T ss_pred cccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHh-hCCEEEEEeCCchhhH---Hh-h-----
Confidence 3444567889999999999997 48999999999 999999999976 4788888776542211 11 0
Q ss_pred cccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCC-HHHHHHH
Q 010554 168 TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS 236 (507)
Q Consensus 168 ~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~d-l~~ll~~ 236 (507)
++ +.++.... + ..|...++..+..... .+.++++.||+-+ +.+ +..+++.
T Consensus 232 --~~---v~~i~d~~-~-------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 232 --FG---IPLITDSY-L-------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred --cC---CcEEeCCC-C-------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 11 33443221 1 1466677776654432 3679999999933 433 4555543
|
|
| >cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-08 Score=98.08 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=129.6
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHh--------cCCCEEEEEeccCchHHHHHHHhcc
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCIN--------SGINKIFVLTQFNSASLNRHIARTY 163 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~--------~Gi~~I~Vv~~~~~~~l~~~l~~~~ 163 (507)
+.+||||||.||||. ...||+|+||+ |+ |+|+|.++.+.. .+|..+++...+..+.+.+++.+..
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 368999999999995 78999999999 99 999999999976 3477777777788888999997532
Q ss_pred cCCCc--ccCCCeEEEecCc-cC-CCCCC--CCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceec-cC-CHHHH
Q 010554 164 FGNGT--NFGDGFVEVLAAT-QT-PGESG--KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-RM-DYMDF 233 (507)
Q Consensus 164 ~~~~~--~~~~~~V~vl~~~-q~-~~~~~--~~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~-~~-dl~~l 233 (507)
+.... .|.+..+-.+... .. ..+.. ...+-|.||.+.... ..+++....+.+.+.|.+.|.+. .. |. .+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HH
Confidence 11110 0111111111110 00 00001 123568888776442 23444344677889999999954 45 54 46
Q ss_pred HHHHHHcCCceEEEEEEcCCCCCccceEEEECCCCc--EEEEEeCCCccccccc---c-ccccccCCCccccccCCceee
Q 010554 234 IQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAM---Q-VDTSLLGFSPQEARKCPYVAS 307 (507)
Q Consensus 234 l~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~gr--V~~~~eKp~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~ 307 (507)
+-.+...++++.+-+.+.+..+ +.-|++...++|+ ++++.|-|........ . -+.+ .......+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~---------~~~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDID---------DAPFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCC---------ceeeccce
Confidence 7777888888777666554322 2346555432354 6666665532211000 0 0011 11235789
Q ss_pred eEEEEEeHHHHHHHHH
Q 010554 308 MGVYVFKKDVLFKLLR 323 (507)
Q Consensus 308 ~Giyif~~~iL~~ll~ 323 (507)
+...+|+-+.+.+.++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999999987765
|
This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=84.52 Aligned_cols=74 Identities=32% Similarity=0.508 Sum_probs=60.1
Q ss_pred CCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 395 PPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 395 ~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.+.++ ++.|.+++||++|+|+ ++.+++|+| +++ +.|+++++|.+|+|++++.|++++.+.+
T Consensus 4 ~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi-------------~~~---~~i~~~~~i~~svv~~~~~i~~~~~i~~ 67 (79)
T cd03356 4 ESTVIGENAIIKNSVIGDNVRIGDGVTITNSIL-------------MDN---VTIGANSVIVDSIIGDNAVIGENVRVVN 67 (79)
T ss_pred CCcEECCCCEEeCCEECCCCEECCCCEEeCCEE-------------eCC---CEECCCCEEECCEECCCCEECCCCEEcC
Confidence 445665 4777788889999997 678888776 788 8899999999999999999999998876
Q ss_pred CCCCccCCCCCCCeEEcCCeEEEcCCCEeCC
Q 010554 473 KDDVQEADRPELGFYIRSGITIIMEKATIED 503 (507)
Q Consensus 473 ~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~ 503 (507)
. ++|+++++|++
T Consensus 68 ~-------------------~~ig~~~~i~~ 79 (79)
T cd03356 68 L-------------------CIIGDDVVVED 79 (79)
T ss_pred C-------------------eEECCCeEECc
Confidence 3 56788888764
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-09 Score=98.99 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=60.4
Q ss_pred cCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCc--------------ceeeCCCc
Q 010554 393 FLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKV--------------PIGVGRNT 451 (507)
Q Consensus 393 ~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~--------------~~~Ig~~~ 451 (507)
+.+.+.|. ++.|.++.||++|.|+ ++.+.++++ ..++.++.|. +.++++.. .+.|++.+
T Consensus 36 Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~ 115 (193)
T cd03353 36 IGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLS 115 (193)
T ss_pred ECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCEecccc
Confidence 33344443 3666667777777776 566777666 2344444442 34444300 03334444
Q ss_pred EEeeeEeCCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 452 KIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 452 ~I~nsIIg~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.|.+|+||+++.||+++.+.+.+ .++|......+..+..| +.||+++.|++|+++
T Consensus 116 ~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~-~~Ig~~~~i~~gs~V 177 (193)
T cd03353 116 YLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAP-VTIGDGATIAAGSTI 177 (193)
T ss_pred eecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCC-cEECCCcEECCCCEE
Confidence 44456666666666666665432 23333333333334445 567788888877754
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-09 Score=100.27 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=53.0
Q ss_pred CCCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 394 LPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 394 ~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
.+++.|+ ++.|.++.||+||.|+ +|.|.+|+| +++ +.|++++.|.+++||++|.|++++.|.
T Consensus 6 ~~~~~I~~~a~i~~~~IG~~~~Ig~~a~I~~s~I-------------G~~---s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 6 SPEPTLHPTAELTESKLGRYTEIGERTRLREVAL-------------GDY---SYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred CCCCeECCCcEEeccEeCCCcEECCCcEEeCCEE-------------CCC---CEECCCcEEeeeEECCCCEECCCCEEC
Confidence 3455666 4888889999999998 688888777 777 889999999999999999999999887
Q ss_pred cC
Q 010554 472 NK 473 (507)
Q Consensus 472 ~~ 473 (507)
++
T Consensus 70 ~~ 71 (204)
T TIGR03308 70 AT 71 (204)
T ss_pred CC
Confidence 54
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-09 Score=117.21 Aligned_cols=121 Identities=13% Similarity=0.210 Sum_probs=73.6
Q ss_pred CCCCCcccCCCcCCCceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEee
Q 010554 382 DPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRN 455 (507)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~n 455 (507)
++...+.....+.+++.|+ ++.|.+|+|++||.|+++.+.+|+| ..++.++.|. ++|+++ |.||+++.|.+
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~---~~Ig~~~~i~~ 348 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSN---CRIGNFVEIKK 348 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCc---eEECCCEEEec
Confidence 4444555555566667775 5778888888888887677777777 3566777663 667766 66776666655
Q ss_pred eE-----------------eCCCCEECCCcEEec-------CCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 456 CI-----------------IDKNVKIGKDVVIVN-------KDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 456 sI-----------------Ig~na~Ig~~~~i~~-------~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++ |+++|.||.++.+.+ ...+++......+..+.+| +.||+++.|++|++
T Consensus 349 ~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~-~~ig~~~~v~~~~~ 422 (450)
T PRK14360 349 SQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAP-ITLGEDVTVAAGST 422 (450)
T ss_pred cccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCC-cEECCCCEECCCCE
Confidence 54 445555555555443 2233344444444444445 55666666666654
|
|
| >COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-07 Score=88.54 Aligned_cols=234 Identities=15% Similarity=0.215 Sum_probs=154.5
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+..+||.|-=..|||.- |||--|+|+ |||.|+.++..++|.++++|.|.+ +++.+++. .||.
T Consensus 3 ~~~viIPAR~~STRLpg------KPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~--------~~G~- 64 (247)
T COG1212 3 KFVVIIPARLASTRLPG------KPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ--------AFGG- 64 (247)
T ss_pred ceEEEEecchhcccCCC------CchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH--------HhCC-
Confidence 46788999888999964 999999999 999999999999999999999864 56777774 2331
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.+ ++....+ ..||-. +..+...+. ...++-++=+-||.=+ ...+..+++...+.+++|.-++.+.
T Consensus 65 ~a-vmT~~~h--------~SGTdR-~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i 131 (247)
T COG1212 65 EA-VMTSKDH--------QSGTDR-LAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKI 131 (247)
T ss_pred EE-EecCCCC--------CCccHH-HHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeec
Confidence 11 2222221 136644 333433332 1223455666899833 3456778887777778876666665
Q ss_pred CCCCC---ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 252 GESRA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 252 ~~~~~---~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.++.. .+--.+..|.+|+-+.|...|-....+. .- ..+.+--.|+|.|++++|.++..+. |+
T Consensus 132 ~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~-------------~~p~l~HIGIYayr~~~L~~f~~~~-ps 196 (247)
T COG1212 132 TDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FG-------------GTPFLRHIGIYAYRAGFLERFVALK-PS 196 (247)
T ss_pred CCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cC-------------CcchhheeehHHhHHHHHHHHHhcC-Cc
Confidence 54221 2334456788899999987664332110 00 0246778999999999999987764 22
Q ss_pred CCchh--hhhHHhhhhcCcEEEEEeccEE-EecCCHHHHHHHHHHhhc
Q 010554 329 SNDFG--SEIIPAAIMEHDVQAYIFRDYW-EDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~--~dil~~li~~~~V~~~~~~gyw-~dIgt~~~y~~An~~ll~ 373 (507)
...-. -|-|..+-...+|.+...+..- ..|+|++||.++...+.+
T Consensus 197 ~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 197 PLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred hhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 11101 1234444456899998888654 899999999999887653
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=81.67 Aligned_cols=74 Identities=19% Similarity=0.364 Sum_probs=59.8
Q ss_pred CCceec-ceeee-ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 395 PPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 395 ~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
|+++++ ++.|. +++|+++|.|+ +|.|.+|++ +++ +.|+++++|.+|++++++.|++++.+.
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii-------------~~~---~~i~~~~~i~~sii~~~~~v~~~~~~~ 67 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVI-------------LSN---STVRDHSWVKSSIVGWNSTVGRWTRLE 67 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEE-------------cCC---CEECCCCEEeCCEEeCCCEECCCcEEe
Confidence 456665 46673 78899999997 688888776 888 899999999999999999999999886
Q ss_pred cCCCCccCCCCCCCeEEcCCeEEEcCCCEeCC
Q 010554 472 NKDDVQEADRPELGFYIRSGITIIMEKATIED 503 (507)
Q Consensus 472 ~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~ 503 (507)
+. ++||++++|++
T Consensus 68 ~~-------------------~~ig~~~~i~~ 80 (80)
T cd05824 68 NV-------------------TVLGDDVTIKD 80 (80)
T ss_pred cC-------------------EEECCceEECC
Confidence 53 56788887763
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.8e-08 Score=98.17 Aligned_cols=109 Identities=8% Similarity=0.048 Sum_probs=76.2
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.+||||||+|+||. .+|.|+|+.|+ ||++|+++.+.. .+++|+|+++... . . .+ . +.
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~-~~~~ViVv~~~~~--~-~----~~-~----~~-- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAK-YCEQVFLSARPSQ--W-Q----GT-P----LE-- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHh-hCCEEEEEeCchH--h-h----hc-c----cc--
Confidence 6789999999999996 59999999999 999999988876 4889988886421 1 0 00 0 00
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccCC-HHHHHHHH
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSH 237 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~~d-l~~ll~~h 237 (507)
.+.++.... +..|...+|+.++..+. .+.++++.||+- ...+ +..+++.+
T Consensus 219 ~v~~I~D~~--------~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 NLPTLPDRG--------ESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCeEEeCCC--------CCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 123332221 12599999999876543 357899999994 3434 56666654
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=80.42 Aligned_cols=62 Identities=21% Similarity=0.409 Sum_probs=43.4
Q ss_pred CCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 395 PPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 395 ~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.+.++ ++.|.+++|+++|.|+ ++.|.+|+| +++ +.|+++++|.+|+|+++++|++++.|..
T Consensus 4 ~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i-------------~~~---~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 67 (79)
T cd05787 4 RGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYI-------------WDD---VTIEDGCTIHHSIVADGAVIGKGCTIPP 67 (79)
T ss_pred CCCEECCCCEEeccEECCCCEECCCCEEeCcEE-------------eCC---CEECCCCEEeCcEEcCCCEECCCCEECC
Confidence 344554 3666667777777776 466666555 677 7788888888888888888888877764
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-07 Score=96.80 Aligned_cols=214 Identities=19% Similarity=0.231 Sum_probs=127.6
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhc--------------CCCEEEEEe-ccCchH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GINKIFVLT-QFNSAS 154 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~--------------Gi~~I~Vv~-~~~~~~ 154 (507)
.++.+||||||.||||. ...||+|+||+ |+ ||+++.++.+... .+. ++|++ .+..+.
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip-~~IMTS~~t~~~ 179 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIY-ILVLTSSFNHDQ 179 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCC-EEEEeCcchHHH
Confidence 46999999999999996 68999999994 78 9999999999874 244 45554 577888
Q ss_pred HHHHHHhc-ccCCCcc----cCCCeEEEecCc-cC----CCCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcC
Q 010554 155 LNRHIART-YFGNGTN----FGDGFVEVLAAT-QT----PGESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 222 (507)
Q Consensus 155 l~~~l~~~-~~~~~~~----~~~~~V~vl~~~-q~----~~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~g 222 (507)
+.+++.+. ||+.... |.++.+-.+... .. ....-...|.|.|+-.+.... .+++....+.+++.+.+.
T Consensus 180 t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 180 TRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 88888643 2432110 111111111100 00 000000224688876665422 344444567899999999
Q ss_pred ceec-cCCHHHHHHHHHHcCC-ceEEEEEEcCCCCCccceEEEE-CCCCcEEEEEeCCCccccccccccccccCCCcccc
Q 010554 223 DHLY-RMDYMDFIQSHVDRDA-DITISCAAVGESRASDYGLVKI-DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (507)
Q Consensus 223 D~i~-~~dl~~ll~~h~~~~a-~~tl~~~~~~~~~~~~~g~v~i-d~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~ 299 (507)
|.+. ..---.++-.+...++ ++.-.+.+... .+.-|++.. |..-.|+.+.|-+...... ..-++..+
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~~~~g~l------- 329 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNN-DELLTGEL------- 329 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhc-ccccCCee-------
Confidence 9974 3333467777888777 65544333322 234566654 3222678888765433210 00000111
Q ss_pred ccCCceeeeEEEEEeHHHHHHHHH
Q 010554 300 RKCPYVASMGVYVFKKDVLFKLLR 323 (507)
Q Consensus 300 ~~~~~l~~~Giyif~~~iL~~ll~ 323 (507)
.....++..++|+.++|.++++
T Consensus 330 --~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 --AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred --cccccceEEEEEEHHHHHHHhh
Confidence 1246788999999999987654
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.5e-08 Score=98.03 Aligned_cols=21 Identities=5% Similarity=-0.235 Sum_probs=13.1
Q ss_pred EEEecCCHHHHHHHHHHhhcc
Q 010554 354 YWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 354 yw~dIgt~~~y~~An~~ll~~ 374 (507)
.+.-+++|...+..-..++.+
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~ 86 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDP 86 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcc
Confidence 356678898666555555543
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=84.68 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=43.8
Q ss_pred EEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 408 IISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 408 iIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
.|+++|.| .+|+| ..++ ++.+ +|+++++ +.||++++|.+|+|+++++||+++.|.+
T Consensus 3 ~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~---~~Ig~~~~I~~siI~~~~~Ig~~~~i~~ 62 (104)
T cd04651 3 YIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG---VRVGSGSVVEDSVIMPNVGIGRNAVIRR 62 (104)
T ss_pred eecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC---CEECCCCEEEEeEEcCCCEECCCCEEEe
Confidence 44555554 44555 2467 7777 4999999 8999999999999999999999999976
|
It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=90.24 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=32.0
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++++++ +.|++++.|.+|+||+++.||.++.|.+...+++.
T Consensus 62 ~~Ig~~---~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~g~~Ig~~ 102 (155)
T cd04745 62 TVLEEN---GHIGHGAILHGCTIGRNALVGMNAVVMDGAVIGEE 102 (155)
T ss_pred eEEcCC---CEECCCcEEECCEECCCCEECCCCEEeCCCEECCC
Confidence 556887 78888888889999999999988888775444433
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-08 Score=93.70 Aligned_cols=113 Identities=17% Similarity=0.241 Sum_probs=78.1
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
+.+|.+||||||+++|| .+|+|++++|+ |||+|+++.|....- .++|....+.+. +. .++
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~---------~~g 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YA---------EFG 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hh---------ccC
Confidence 46789999999999999 67999999999 999999999988754 555555544321 11 122
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCC-HHHHHHHHHHcC
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQSHVDRD 241 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~d-l~~ll~~h~~~~ 241 (507)
++++..... ++ |.-.+++.++..+. .+.++++.||+=+ ..+ +..+.+.....+
T Consensus 62 ---~~vv~D~~~-------~~-GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 62 ---LPVVPDELP-------GF-GPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred ---CceeecCCC-------CC-CCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 345543221 12 88888888876663 5799999999933 444 455555544433
|
|
| >PLN02474 UTP--glucose-1-phosphate uridylyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-06 Score=89.00 Aligned_cols=213 Identities=15% Similarity=0.222 Sum_probs=128.7
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc----CCC-EEEEEeccC-chHHHHHHHhcc--
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTY-- 163 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~----Gi~-~I~Vv~~~~-~~~l~~~l~~~~-- 163 (507)
..++.+|.||||.||||. ..-||.++|+.+...++|..++.+... |.+ -.+|.++++ .+...+++.+ |
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 468899999999999998 578999999954338999988887543 443 346677755 4557777753 3
Q ss_pred cCCCc-ccCCCeEE-EecCccC----CC-CCCCCc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecc-CCHHH
Q 010554 164 FGNGT-NFGDGFVE-VLAATQT----PG-ESGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDYMD 232 (507)
Q Consensus 164 ~~~~~-~~~~~~V~-vl~~~q~----~~-~~~~~~-~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~~-~dl~~ 232 (507)
+.... -|.+..+- +...... .+ .+...| |.|.||...... ..+++....+.+++.|.+.|.+.. .| ..
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vD-p~ 231 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVD-LK 231 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccC-HH
Confidence 21110 11111111 1110000 00 001113 467776655432 123444446789999999999764 44 46
Q ss_pred HHHHHHHcCCceEEEEEEcCCCCCccceEEE-ECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEE
Q 010554 233 FIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVY 311 (507)
Q Consensus 233 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giy 311 (507)
++.+|..+++++++=+.+...++ ..-|.+. .|..=+|+++.+-|+..... .+ . .....+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~dgk~~lvEysqvp~e~~~~---f~-~---------~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEGKVQLLEIAQVPDEHVNE---FK-S---------IEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCC-CCccEEEEECCEEEEEEEecCCHHHHHh---hc-c---------cccceeeeeeeE
Confidence 88899999999888776544322 2235444 33223577888777543210 00 0 012357899999
Q ss_pred EEeHHHHHHHHH
Q 010554 312 VFKKDVLFKLLR 323 (507)
Q Consensus 312 if~~~iL~~ll~ 323 (507)
.|+-+.|.++++
T Consensus 298 w~~L~~l~~~~~ 309 (469)
T PLN02474 298 WVNLKAIKRLVE 309 (469)
T ss_pred EEEHHHHHHHhh
Confidence 999999988765
|
|
| >cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=93.35 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=58.3
Q ss_pred cCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEE
Q 010554 393 FLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKI 464 (507)
Q Consensus 393 ~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~I 464 (507)
+.+.+.+. .+.|. ++.||++|.|+ ++.|.+++| ..++.++.+. ++++++ +.||++++|+ +++|+++++|
T Consensus 18 ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~---~~Ig~~~~I~~~~~Ig~~~~I 94 (193)
T cd03353 18 IGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG---ATVGPFAHLRPGTVLGEGVHI 94 (193)
T ss_pred ECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC---CEECCccEEcCccEECCCCEE
Confidence 33445554 35565 68899999997 688888877 3667777774 888888 8899999987 7888888888
Q ss_pred CCCcEEec
Q 010554 465 GKDVVIVN 472 (507)
Q Consensus 465 g~~~~i~~ 472 (507)
++++.+.+
T Consensus 95 g~~~~i~~ 102 (193)
T cd03353 95 GNFVEIKK 102 (193)
T ss_pred CCcEEEec
Confidence 88777764
|
It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=95.01 Aligned_cols=62 Identities=26% Similarity=0.201 Sum_probs=32.1
Q ss_pred eeeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEE-cCCeEEEcCCCEeCCCccC
Q 010554 445 IGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI-RSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 445 ~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i-~~g~~vig~~~~i~~gt~i 507 (507)
+.|..|+.|.. +.||+||.|+.|++|+. ++++.+.....=+.+ .-|.++|++++.||.+|.|
T Consensus 154 ~~i~~~v~I~~~~~IG~~v~I~~GavIG~-dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~I 217 (338)
T COG1044 154 TVIHPNVTIYHNVVIGNNVIIHSGAVIGA-DGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTI 217 (338)
T ss_pred cEEcCCCEEecCcEECCceEECCCCEEcc-CccccccccCCceEcceeceEEECCceEEccccee
Confidence 44444555543 66666666666666653 455555322221222 2355666666666666544
|
|
| >COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-08 Score=101.95 Aligned_cols=99 Identities=20% Similarity=0.362 Sum_probs=75.7
Q ss_pred eeee-ceEEcCCcEEc-cceEeeeeEE---eeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCC
Q 010554 402 CRIK-DAIISHGCFLR-ECTVEHSIVD---YYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 474 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~ 474 (507)
+.+. ++.||++|+|+ +|.|++|.|+ .|...+.+. |.+++| +.||..++|| +|.++++++||..|.++++
T Consensus 281 v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a- 356 (460)
T COG1207 281 VILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---ATVGPFARLRPGAVLGADVHIGNFVEVKKA- 356 (460)
T ss_pred cEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC---cccCCccccCCcCcccCCCeEeeeEEEecc-
Confidence 4443 67899999998 7899998882 445555563 777888 7888888888 7999999999999999885
Q ss_pred CCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 475 DVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 475 ~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.+++......=.|+ |-+.||++++||+||+
T Consensus 357 ~ig~gsKa~HLtYl--GDA~iG~~~NiGAGtI 386 (460)
T COG1207 357 TIGKGSKAGHLTYL--GDAEIGENVNIGAGTI 386 (460)
T ss_pred cccCCccccceeee--ccceecCCceeccceE
Confidence 56666665555666 4467888888888886
|
|
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-08 Score=92.14 Aligned_cols=90 Identities=16% Similarity=0.383 Sum_probs=54.7
Q ss_pred ceEEcCCcEEc-cceEeee----eE---EeeccCceE------eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 406 DAIISHGCFLR-ECTVEHS----IV---DYYQTESEI------ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~S----ii---~~vg~~~~i------~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
++.||++|.|. +|.|..+ +| ..+|.++.| .++|+++ +.||+++.|.+|+|++++.||.++.+.
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~---~~Ig~~a~I~~siIg~~~~IG~ga~I~ 102 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN---GHVGHGAILHGCIVGRNALVGMNAVVM 102 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC---CEECCCCEEcCCEECCCCEECCCcccC
Confidence 45666666665 4555421 22 234555544 2677888 788888888899999999998888887
Q ss_pred cCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 472 NKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 472 ~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
+...+++. ..+..| ++|.++..|++++
T Consensus 103 ~g~~IG~~------s~Vgag-s~V~~~~~ip~~~ 129 (192)
T TIGR02287 103 DGAVIGEN------SIVAAS-AFVKAGAEMPAQY 129 (192)
T ss_pred CCeEECCC------CEEcCC-CEECCCCEECCCe
Confidence 65433333 333334 3444444454443
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.5e-08 Score=94.86 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=37.0
Q ss_pred eeeCCCcEE-eeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 445 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 445 ~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+.|+++++| .+|+||+++.|+.++.+.+...+++......+..|.++ +.||++++|+.++++
T Consensus 109 ~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 109 NLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQF-CRIGRHAMVGGGSGV 171 (254)
T ss_pred CEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCC-cEECCCCEECcCCEE
Confidence 344444444 45666666666666666555556666555556666666 666777777777653
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.1e-08 Score=95.02 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=24.6
Q ss_pred eeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 446 GVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 446 ~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.||+++.|. ++.|+.+++||++|.|.+...+.......++..|..+ ++|..+++|+++++
T Consensus 104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-~~i~~~v~Ig~~~~ 164 (254)
T cd03351 104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGL-SAVHQFCRIGRHAM 164 (254)
T ss_pred EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCc-ceECCCcEECCCCE
Confidence 334444432 3334444444444444444333333333333333333 33444444444443
|
It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.1e-08 Score=91.07 Aligned_cols=67 Identities=19% Similarity=0.441 Sum_probs=45.2
Q ss_pred ceEEcCCcEEc-cceEeee----eE---EeeccCceE------eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 406 DAIISHGCFLR-ECTVEHS----IV---DYYQTESEI------ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~S----ii---~~vg~~~~i------~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
+++||+||.|. +++|..+ +| ..+|.++.| .++++++ +.||.++.|.+|+|+++|.||.++++.
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~---~~Ig~~a~i~g~vIG~~v~IG~ga~V~ 104 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN---GHIGHGAILHGCVIGRDALVGMNSVIM 104 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC---CEECCCcEEeeEEECCCCEECcCCccC
Confidence 55666666666 4555442 22 234444444 3677888 788888888899999999999888887
Q ss_pred cCCC
Q 010554 472 NKDD 475 (507)
Q Consensus 472 ~~~~ 475 (507)
++..
T Consensus 105 ~g~~ 108 (196)
T PRK13627 105 DGAV 108 (196)
T ss_pred CCcE
Confidence 6543
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.3e-08 Score=103.51 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=48.8
Q ss_pred eeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 402 CRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.|. +++||++|.|+ +|.|.+++| +.++.++.+. ++++++ +.||++++|. +++|+++++||+++.+.+
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~---~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~ 348 (451)
T TIGR01173 274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG---CDVGPFARLRPGSVLGAGVHIGNFVETKN 348 (451)
T ss_pred eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC---cEECCeeEECCCCEECCCcEEccceeecC
Confidence 4444 57788888887 677888777 3566677764 777777 7788888887 577777777777766654
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=93.45 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=31.0
Q ss_pred eeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 454 RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 454 ~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.+|+||+++.|+.++.+.+...+++......+..+.++ +.||+++.|+.+++
T Consensus 118 ~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~~s~ 169 (254)
T TIGR01852 118 HDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQF-VRIGRYAMIGGLSA 169 (254)
T ss_pred cCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCC-cEECCCCEEeeeee
Confidence 45666666666666666555555555555555555555 55666666666654
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-08 Score=100.45 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=60.0
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 484 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~ 484 (507)
+++++++|+|+ ++.|..||| +.+ |.||+.++|.||||++|++||+||.|.|| .++....+++
T Consensus 334 d~iv~~~t~i~~~s~ik~Svi-------------G~n---C~Ig~~~~v~nSilm~nV~vg~G~~Iens-IIg~gA~Ig~ 396 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIKRSVI-------------GSN---CDIGERVKVANSILMDNVVVGDGVNIENS-IIGMGAQIGS 396 (433)
T ss_pred hhccCCCceecccceeeeeee-------------cCC---ccccCCcEEEeeEeecCcEecCCcceecc-eecccceecC
Confidence 67889999998 678888877 888 89999999999999999999999999984 5555555555
Q ss_pred CeEEcCCeEEEcCCCEeC
Q 010554 485 GFYIRSGITIIMEKATIE 502 (507)
Q Consensus 485 ~~~i~~g~~vig~~~~i~ 502 (507)
|..++ .|.||++=+++
T Consensus 397 gs~L~--nC~Ig~~yvVe 412 (433)
T KOG1462|consen 397 GSKLK--NCIIGPGYVVE 412 (433)
T ss_pred CCeee--eeEecCCcEEc
Confidence 44442 14555555555
|
|
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-07 Score=94.35 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=9.4
Q ss_pred eeeeEEEEEeHHH
Q 010554 305 VASMGVYVFKKDV 317 (507)
Q Consensus 305 l~~~Giyif~~~i 317 (507)
...++.+++.+++
T Consensus 52 ~~~A~a~Iv~~d~ 64 (343)
T PRK00892 52 TTKAGAVIVSPDD 64 (343)
T ss_pred ccCCeEEEechhh
Confidence 4567888887764
|
|
| >PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-08 Score=103.18 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=65.4
Q ss_pred CCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeEE---eeccCceEe--eeecCCCcceeeCCCcEEeee-------
Q 010554 391 PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVD---YYQTESEIA--SLLAEGKVPIGVGRNTKIRNC------- 456 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~ns------- 456 (507)
+.+.+.+.|+ +|.|.+|+||+||.|+ +|.|.+++|+ .+|.++.|. +.++++ +.||+++.|.+|
T Consensus 288 ~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~---~~ig~~~~i~~~~i~~~~~ 364 (456)
T PRK14356 288 SRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEG---ARVGNFVEMKKAVLGKGAK 364 (456)
T ss_pred eEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCC---CEecCCceeeeeEecCCcE
Confidence 3444555555 4777788888888887 5777777772 556666662 555555 556655555554
Q ss_pred ----------EeCCCCEECCCcEEecC-------CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 457 ----------IIDKNVKIGKDVVIVNK-------DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 457 ----------IIg~na~Ig~~~~i~~~-------~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+||+++.||.++.+.+. ..+++......+..+-.| +.||+++.|++|+++
T Consensus 365 i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~-~~ig~~~~i~~~~~v 431 (456)
T PRK14356 365 ANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAP-VTIGDGALVGAGSVI 431 (456)
T ss_pred ecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCC-cEECCCCEEcCCCEE
Confidence 45555555555544332 123333333334444445 567777777777754
|
|
| >cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.1e-08 Score=77.60 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=57.2
Q ss_pred EEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCe
Q 010554 408 IISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGF 486 (507)
Q Consensus 408 iIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~ 486 (507)
+||++|+|+ ++.|.+|+| +++ +.||++++|.+|+|+++++|++++.|.+ ..+++..+...+.
T Consensus 1 ~ig~~~~I~~~~~i~~s~i-------------g~~---~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~ 63 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVI-------------GRN---CKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIGKGC 63 (79)
T ss_pred CccCCCEECCCCEEeccEE-------------CCC---CEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEECCCC
Confidence 467888887 577777766 788 8999999999999999999999999986 3566665555555
Q ss_pred EEcCCeEEEcCCCEeC
Q 010554 487 YIRSGITIIMEKATIE 502 (507)
Q Consensus 487 ~i~~g~~vig~~~~i~ 502 (507)
++..| ++|+++++|+
T Consensus 64 ~i~~~-~~v~~~~~ig 78 (79)
T cd05787 64 TIPPG-SLISFGVVIG 78 (79)
T ss_pred EECCC-CEEeCCcEeC
Confidence 55444 4445555544
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-08 Score=95.37 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=25.0
Q ss_pred eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 455 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+|+||+++.|++++.+.+...+++......+..|.++ +.||+++.|++|+++
T Consensus 123 ~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~-v~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 123 DCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQF-VRIGAHAMVGGMSGV 174 (262)
T ss_pred eEEECCCeEECCccccccccccCCcEEEeecceecCC-CEECCCCEEeeecce
Confidence 3444444444444444433344444444444444445 455666666666553
|
|
| >cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon) | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-08 Score=78.23 Aligned_cols=48 Identities=23% Similarity=0.498 Sum_probs=38.6
Q ss_pred EcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 409 ISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 409 Ig~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
||++|.|+ ++.|.+++| +++ +.|+++++|++|+|++++.||.++.|.+
T Consensus 2 ig~~~~I~~~~~i~~~~I-------------g~~---~~I~~~~~i~~s~i~~~~~ig~~~~l~~ 50 (81)
T cd04652 2 VGENTQVGEKTSIKRSVI-------------GAN---CKIGKRVKITNCVIMDNVTIEDGCTLEN 50 (81)
T ss_pred ccCCCEECCCCEEeCcEE-------------CCC---CEECCCCEEeCcEEeCCCEECCCCEEec
Confidence 67777776 566666665 777 7888889998899999999998888876
|
eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. |
| >cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-08 Score=77.62 Aligned_cols=75 Identities=23% Similarity=0.412 Sum_probs=54.7
Q ss_pred EEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCe
Q 010554 408 IISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGF 486 (507)
Q Consensus 408 iIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~ 486 (507)
+||++|.|+ ++.|.+|+| +++ +.||++++|.+|+|+++++|++++.|.++ .+. ++.
T Consensus 1 ~ig~~~~I~~~~~i~~s~i-------------g~~---~~Ig~~~~i~~svi~~~~~i~~~~~i~~s-vv~------~~~ 57 (79)
T cd03356 1 LIGESTVIGENAIIKNSVI-------------GDN---VRIGDGVTITNSILMDNVTIGANSVIVDS-IIG------DNA 57 (79)
T ss_pred CccCCcEECCCCEEeCCEE-------------CCC---CEECCCCEEeCCEEeCCCEECCCCEEECC-EEC------CCC
Confidence 478888887 677777666 888 89999999999999999999999999874 232 223
Q ss_pred EEcCCeEEEcCCCEeCCCcc
Q 010554 487 YIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 487 ~i~~g~~vig~~~~i~~gt~ 506 (507)
.|..+ +.|..++.|+++++
T Consensus 58 ~i~~~-~~i~~~~~ig~~~~ 76 (79)
T cd03356 58 VIGEN-VRVVNLCIIGDDVV 76 (79)
T ss_pred EECCC-CEEcCCeEECCCeE
Confidence 34444 44444455555554
|
Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=86.19 Aligned_cols=87 Identities=16% Similarity=0.352 Sum_probs=51.3
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEE-----eeeEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKI-----RNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I-----~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||++|.|+ +|.|....- ...|+++ +.|+++|+| .+|+|++++.|+.+++|.+ ..+++.
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~---------~i~IG~~---~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~-~~Ig~~ 84 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFG---------RIVIRDG---ANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG-CTIGRN 84 (155)
T ss_pred cEEECCCCEECCCcEEeCCCC---------cEEECCC---CEECCCCEEeecCCCCeEEcCCCEECCCcEEEC-CEECCC
Confidence 56677777775 455543100 0123666 667777777 4577777777777766654 355555
Q ss_pred CCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 480 DRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 480 ~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.....+.++.+| ++|+++++|+++++
T Consensus 85 ~~Ig~~~~I~~g-~~Ig~~~~Ig~~s~ 110 (155)
T cd04745 85 ALVGMNAVVMDG-AVIGEESIVGAMAF 110 (155)
T ss_pred CEECCCCEEeCC-CEECCCCEECCCCE
Confidence 555555666555 55666666666654
|
coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity. |
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=101.47 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=26.3
Q ss_pred eeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEee
Q 010554 402 CRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRN 455 (507)
Q Consensus 402 ~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~n 455 (507)
|.|.+|+|+++|.|+ ++.|.+++| ..+|.++++. +.++++ +.|++++.|.+
T Consensus 301 ~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~---~~Ig~~~~i~~ 357 (481)
T PRK14358 301 SVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEG---VHIGNFVETKN 357 (481)
T ss_pred CEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCC---CEECCCEEECC
Confidence 555566666666666 455666555 1344444442 444444 44444444333
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.9e-08 Score=90.75 Aligned_cols=14 Identities=36% Similarity=0.306 Sum_probs=8.2
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
++||++++|+++++
T Consensus 169 ~~ig~~~~v~~~~~ 182 (197)
T cd03360 169 VTIGAGAIIGAGAV 182 (197)
T ss_pred CEECCCCEECCCCE
Confidence 45566666666554
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-07 Score=92.50 Aligned_cols=61 Identities=15% Similarity=0.443 Sum_probs=39.4
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++|+++ |.||.||.|.+|+|+++|.||.+++|.++..+ .++..|..| ++|.++++|+++++
T Consensus 120 siIG~~---v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~I------g~~a~Igag-SvV~~~~~I~~~~~ 180 (269)
T PLN02296 120 TIIGDN---VTIGHSAVLHGCTVEDEAFVGMGATLLDGVVV------EKHAMVAAG-ALVRQNTRIPSGEV 180 (269)
T ss_pred cEeCCC---CEECCCceecCCEECCCcEECCCcEECCCeEE------CCCCEECCC-CEEecCCEeCCCeE
Confidence 567777 77888888888888888888888888654333 233344444 44555555555543
|
|
| >cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=86.24 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=44.4
Q ss_pred eccCceEe--eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEE
Q 010554 428 YQTESEIA--SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYI 488 (507)
Q Consensus 428 vg~~~~i~--s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i 488 (507)
+++++.|. ++|+++ +.|+++++|.+|+|+++++|+.++.+.++ .+++..+...+..+
T Consensus 44 I~~~~~i~~~~~Ig~~---~~I~~~~~i~~siig~~~~I~~~~~i~~s-iIg~~~~I~~~~~i 102 (163)
T cd05636 44 IGPNAYIRGYTVLGDG---CVVGNSVEVKNSIIMDGTKVPHLNYVGDS-VLGENVNLGAGTIT 102 (163)
T ss_pred ECCCCEEcCCCEECCC---CEECCCcEEeeeEecCCCEeccCCEEecC-EECCCCEECCCcEE
Confidence 45666673 889999 89999999999999999999988777653 56666666655554
|
Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=100.16 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=56.8
Q ss_pred ceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||+||.|+ ++.|.+++| ..+|.++.|. ++++++ |.||+++.|.+++|++++.|+.++.+.++ .+++.
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~---~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~-~ig~~ 361 (446)
T PRK14353 286 GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG---AKVGNFVEVKNAKLGEGAKVNHLTYIGDA-TIGAG 361 (446)
T ss_pred CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC---eEEcCceEEeceEECCCCEECCeeEEcCc-EEcCC
Confidence 35566666665 456666666 3567777663 777777 77888888888888877766666555442 44444
Q ss_pred CCCCCCeEE-------cCCeEEEcCCCEeCCCcc
Q 010554 480 DRPELGFYI-------RSGITIIMEKATIEDGMV 506 (507)
Q Consensus 480 ~~~~~~~~i-------~~g~~vig~~~~i~~gt~ 506 (507)
.+...+..+ ..+ ++||+++.|+.|++
T Consensus 362 ~~Ig~~~~~~~~~~~~~~~-~~Ig~~~~ig~~~~ 394 (446)
T PRK14353 362 ANIGAGTITCNYDGFNKHR-TEIGAGAFIGSNSA 394 (446)
T ss_pred cEECCceeeeccccccCCC-cEECCCcEECCCCE
Confidence 444444322 112 44555555555543
|
|
| >TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-07 Score=91.45 Aligned_cols=66 Identities=11% Similarity=-0.057 Sum_probs=29.9
Q ss_pred eeecCCCcceeeCCCcEEe--------eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 436 SLLAEGKVPIGVGRNTKIR--------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~--------nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
..|+++ +.|+++|+|. +++||+++.|+.++.|.+.+.+++......+..+..+ ++||+++.|+.++
T Consensus 77 v~IG~~---~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~-~~Igd~~~Ig~~~ 150 (254)
T TIGR01852 77 LIIGDN---NTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH-VEVGDYAIIGGLV 150 (254)
T ss_pred EEECCC---CEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC-cEECCCcEEeccC
Confidence 344555 4555555554 3355555555555555443344443333333333333 4444444444433
|
This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132). |
| >PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=100.71 Aligned_cols=105 Identities=15% Similarity=0.270 Sum_probs=69.2
Q ss_pred CCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECC
Q 010554 395 PPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGK 466 (507)
Q Consensus 395 ~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~ 466 (507)
+++.|+ +|.|. +++||+||.|+ +|.|.+|+| ..+++++.+. ++++++ +.||+++.|. ++.|+++++||+
T Consensus 270 ~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~---~~Ig~~~~i~~~~~i~~~~~ig~ 346 (456)
T PRK09451 270 RDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAA---CTIGPFARLRPGAELAEGAHVGN 346 (456)
T ss_pred CCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCC---cEecCceEEeCCCEECCCceecc
Confidence 345555 46666 68899999998 688888888 3667777774 777777 7888888887 788888888888
Q ss_pred CcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 467 DVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 467 ~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
++.|.++ .+++........++ |-+.||+++.|++++
T Consensus 347 ~~~i~~~-~i~~~~~~~~~~~~--g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 347 FVEMKKA-RLGKGSKAGHLTYL--GDAEIGDNVNIGAGT 382 (456)
T ss_pred ceeeece-eeCCCCccCccccc--cccEECCCCEEcCCe
Confidence 7777643 34444443332222 224555555555444
|
|
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=100.78 Aligned_cols=113 Identities=17% Similarity=0.228 Sum_probs=69.2
Q ss_pred CCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcE-----------
Q 010554 391 PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTK----------- 452 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~----------- 452 (507)
+.+.+.+.|+ ++.|.+|+||++|.|+ ++.+.+|+| ..+|.++.+. +.++++ +.||+++.
T Consensus 287 ~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~---~~ig~~~~~~~~~ig~~~~ 363 (459)
T PRK14355 287 TRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAH---VKIGNFVETKKIVMGEGSK 363 (459)
T ss_pred CEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCC---CEECCCccccCCEECCCce
Confidence 3344445554 4777889999999998 688888888 3566666663 566666 55555433
Q ss_pred ------EeeeEeCCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 453 ------IRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 453 ------I~nsIIg~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
|.+|+|++++.||.++++.|.+ .+++......+..|-+| +.||++++|++|++|
T Consensus 364 ~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~-~~ig~~~~i~a~s~v 430 (459)
T PRK14355 364 ASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAP-VTVGRNSLIAAGTTV 430 (459)
T ss_pred eeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCC-cEECCCCEECCCCEE
Confidence 3346667777777777665432 23333333333333344 566777777777754
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.3e-07 Score=83.63 Aligned_cols=41 Identities=12% Similarity=0.369 Sum_probs=32.2
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++|+++ +.|+++++|.+++|++++.||.++.+.+...+++.
T Consensus 62 ~~Ig~~---~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~~ 102 (154)
T cd04650 62 TEIGDY---VTIGHNAVVHGAKVGNYVIVGMGAILLNGAKIGDH 102 (154)
T ss_pred eEECCC---CEECCCcEEECcEECCCCEEcCCCEEeCCCEECCC
Confidence 456887 88999999999999999999999888765444443
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >TIGR02287 PaaY phenylacetic acid degradation protein PaaY | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-07 Score=89.35 Aligned_cols=62 Identities=13% Similarity=0.342 Sum_probs=34.3
Q ss_pred eEEcCCcEEc-cceE-----eeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEee-eEeCCCCEECCCcEEe
Q 010554 407 AIISHGCFLR-ECTV-----EHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 407 siIg~gc~I~-~~~I-----~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig~~~~i~ 471 (507)
.+||++|.|+ +|.| .+|+| +.++.++.+. |+++++ +.||.++.|.+ ++|++++.|+.++.+.
T Consensus 48 i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~---~~IG~ga~I~~g~~IG~~s~Vgags~V~ 120 (192)
T TIGR02287 48 IVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN---ALVGMNAVVMDGAVIGENSIVAASAFVK 120 (192)
T ss_pred eEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC---CEECCCcccCCCeEECCCCEEcCCCEEC
Confidence 3556666665 4555 34555 2455555553 566665 55666655543 5555555555555554
|
Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator. |
| >COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4e-07 Score=91.15 Aligned_cols=59 Identities=25% Similarity=0.328 Sum_probs=30.0
Q ss_pred eeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 446 GVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 446 ~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
.||++++|.| +-|+.||+||++|.|..+.++.....+++.+.|.+. +.|.....|+|++
T Consensus 226 vIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~-vgI~gh~~IgD~~ 285 (338)
T COG1044 226 VIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQ-VGIAGHLEIGDGV 285 (338)
T ss_pred eecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcc-eeecCceEEcCCC
Confidence 3555555554 445555666666666655555555555554444332 3344444444443
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=100.35 Aligned_cols=92 Identities=25% Similarity=0.369 Sum_probs=62.2
Q ss_pred ceEEcCCcEEc-cceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||++|.|+ ++.|.+|+| +.++. ..+ .++++++ +.||++++|. +++||++++||.++.|.++ .+++.
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~---~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~-~i~~~ 357 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDN---VTVGPFAHLRPGSVIGEEVKIGNFVEIKKS-TIGEG 357 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEECCC---cEECCceEecCCCEEeCCcEECCceEEeee-EECCC
Confidence 57888999997 688888887 24553 333 4889998 8999999998 8999999999998888653 44444
Q ss_pred CCCCCCeEEcCCeEEEcCCCEeCCC
Q 010554 480 DRPELGFYIRSGITIIMEKATIEDG 504 (507)
Q Consensus 480 ~~~~~~~~i~~g~~vig~~~~i~~g 504 (507)
.......++ |.++||+++.|++|
T Consensus 358 ~~i~~~~~~--~~~~ig~~~~ig~~ 380 (458)
T PRK14354 358 TKVSHLTYI--GDAEVGENVNIGCG 380 (458)
T ss_pred CEecceeee--cCcccCCceEEcCc
Confidence 433333333 22344444444443
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.4e-07 Score=81.15 Aligned_cols=40 Identities=20% Similarity=0.518 Sum_probs=31.4
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccC
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
+|+++ +.|+.+|.|.+++|++++.||.++.+.....+++.
T Consensus 62 ~Ig~~---~~I~~~~~i~~~~Ig~~~~Ig~~~~v~~~~~ig~~ 101 (153)
T cd04645 62 IIGDN---VTVGHGAVLHGCTIGDNCLIGMGAIILDGAVIGKG 101 (153)
T ss_pred EEcCC---cEECCCcEEeeeEECCCCEECCCCEEcCCCEECCC
Confidence 67888 88999999999999999999988888754444333
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=94.91 Aligned_cols=10 Identities=30% Similarity=0.162 Sum_probs=4.0
Q ss_pred EcCCCEeCCC
Q 010554 495 IMEKATIEDG 504 (507)
Q Consensus 495 ig~~~~i~~g 504 (507)
||+++.|+.+
T Consensus 282 ig~~~~i~~~ 291 (343)
T PRK00892 282 IGDGVTITAM 291 (343)
T ss_pred ECCCCEEecC
Confidence 3444444333
|
|
| >TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.8e-07 Score=93.27 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=27.4
Q ss_pred eeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCC-----eEEEcCCCEeCCCcc
Q 010554 446 GVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG-----ITIIMEKATIEDGMV 506 (507)
Q Consensus 446 ~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g-----~~vig~~~~i~~gt~ 506 (507)
.||++++|.| +.|+.|++||+++.|.....+....+..++..+.++ -+.||+++.|+.++.
T Consensus 219 ~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~ 285 (324)
T TIGR01853 219 IIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSG 285 (324)
T ss_pred eecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCE
Confidence 3444444443 344555555555555554444333344443333222 034455555555443
|
This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate). |
| >COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=94.48 Aligned_cols=37 Identities=30% Similarity=0.588 Sum_probs=35.1
Q ss_pred eE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 433 EI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 433 ~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+| +|+|+.| ++|+++|.|++|||++++.||+||+|.+
T Consensus 308 ~V~nSVL~~~---v~I~~gs~i~~svim~~~~IG~~~~l~~ 345 (393)
T COG0448 308 TVENSVLFRG---VRIGKGSVIENSVIMPDVEIGEGAVLRR 345 (393)
T ss_pred EEEeeEEecC---eEECCCCEEEeeEEeCCcEECCCCEEEE
Confidence 44 6999999 9999999999999999999999999998
|
|
| >PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-07 Score=90.42 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=20.4
Q ss_pred eeecCCCcceeeCCCcEEee--------eEeCCCCEECCCcEEecCCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n--------sIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
..++++ +.|+++++|.+ ++||+++.|+.++.|.+.+.+++.
T Consensus 81 v~IG~~---~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~ 129 (262)
T PRK05289 81 LVIGDN---NTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNH 129 (262)
T ss_pred EEECCC---CEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCC
Confidence 345555 55555555543 345555555555555443333333
|
|
| >PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.7e-07 Score=96.83 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=51.7
Q ss_pred ceEEcCCcEEc-cceEeeeeEE---eeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVD---YYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||++|.|+ +|.|.+|+|+ .+. .+++ .++++++ +.||++++|+ +++||+|++||+++.+.++ .+++.
T Consensus 273 ~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~---~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~-~ig~~ 347 (448)
T PRK14357 273 KTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD---VSVGPFSRLREGTVLKKSVKIGNFVEIKKS-TIGEN 347 (448)
T ss_pred eeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC---cEECCCcEECCcccccCCcEecCceeeecc-EEcCC
Confidence 57888888888 6788888771 232 2233 5899998 8899999996 5999999999998877652 44444
Q ss_pred C
Q 010554 480 D 480 (507)
Q Consensus 480 ~ 480 (507)
.
T Consensus 348 ~ 348 (448)
T PRK14357 348 T 348 (448)
T ss_pred c
Confidence 3
|
|
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-07 Score=88.63 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=31.3
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDV 476 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~ 476 (507)
++|+++ |.||++|.|.+|+|+++|.||.+++|.++..+
T Consensus 127 tvIG~~---v~IG~~s~L~~~~Igd~v~IG~~svI~~gavI 164 (246)
T PLN02472 127 TLIDRY---VTIGAYSLLRSCTIEPECIIGQHSILMEGSLV 164 (246)
T ss_pred cEECCC---CEECCCcEECCeEEcCCCEECCCCEECCCCEE
Confidence 567888 88999999999999999999999888775443
|
|
| >cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-06 Score=80.45 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=50.2
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEee-----eEeCCCCEECCCcEEecCCCCccC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIVNKDDVQEA 479 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n-----sIIg~na~Ig~~~~i~~~~~~~e~ 479 (507)
++.||++|.|+ ++.|..+. -..+|+++ +.|+++|.|.. ++||+++.|++++.|.++ .+++.
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~---------~~i~Ig~~---~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~-~Ig~~ 84 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDN---------DSIYIGKY---SNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGA-KVGNY 84 (154)
T ss_pred eEEECCCCEEcCCeEEEcCC---------CcEEECCC---CEECCCCEEEeCCCCCeEECCCCEECCCcEEECc-EECCC
Confidence 45666666666 45554430 00123566 66777777664 667777777777766543 56666
Q ss_pred CCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 480 DRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 480 ~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.....+..+..+ ++||+++.+++++.
T Consensus 85 ~~Ig~~~~i~~~-~~Ig~~~~vg~~~~ 110 (154)
T cd04650 85 VIVGMGAILLNG-AKIGDHVIIGAGAV 110 (154)
T ss_pred CEEcCCCEEeCC-CEECCCCEECCCCE
Confidence 665555555555 55566666665543
|
It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=6e-07 Score=88.13 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=7.8
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
++|++||.||.+|.|.+
T Consensus 174 ViIgDnv~IGa~a~I~~ 190 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVE 190 (269)
T ss_pred eEECCCCEECCCCEEcC
Confidence 34444444444444433
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.1e-07 Score=94.20 Aligned_cols=232 Identities=19% Similarity=0.221 Sum_probs=124.6
Q ss_pred CeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCCC---------cEEEEEeCCCccccccc
Q 010554 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMG---------RIAQFAEKPSGANLKAM 285 (507)
Q Consensus 215 ~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~g---------rV~~~~eKp~~~~~~~~ 285 (507)
.-++|.++|+++...-...+. + .+++++++..+.+.+-+.+.|+...|+++ .+.+|..||...+.
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem--- 127 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEM--- 127 (414)
T ss_pred cceEEEecccccccCccccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHH---
Confidence 468999999554322122222 1 23677888888877667889999999888 89999999976543
Q ss_pred cccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC----------------CCchhhhhHHhhhhcCcEEEE
Q 010554 286 QVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT----------------SNDFGSEIIPAAIMEHDVQAY 349 (507)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~----------------~~d~~~dil~~li~~~~V~~~ 349 (507)
+-...++. ......++|++.|+.+..+.++...... +.++..|++..+..+....-.
T Consensus 128 ~~~~av~~-------~~~~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~~g~~~~ei~lY~Dfl~aLg~~~t~e~~ 200 (414)
T PF07959_consen 128 RASGAVLP-------DGNVLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGLSGALPCEIDLYGDFLQALGPDATEEYP 200 (414)
T ss_pred HhCCcccC-------CCcccccccceeccHHHHHHHHHhccCchHhhhhhhhhcCCccceehHHHHHHHHhcCCccccCc
Confidence 21111111 1224679999999999877766432111 234445666555533211111
Q ss_pred EeccEEEecCCHHHHHHHHHHhhccC---CCccccCCCCCcc---cCCCcC----CCce--ecceeeeceEEcCCcEEc-
Q 010554 350 IFRDYWEDIGTIKSFYEANMALTKES---PAFHFYDPKTPFY---TSPRFL----PPTK--IDNCRIKDAIISHGCFLR- 416 (507)
Q Consensus 350 ~~~gyw~dIgt~~~y~~An~~ll~~~---~~~~~~~~~~~i~---~~~~~~----~p~~--i~~~~I~~siIg~gc~I~- 416 (507)
... ..+.+.-..+..|.+.+.+.- +---++-++..+| |...++ .+.. +...++..+.....+.++
T Consensus 201 ~~~--~~~~~~~~~l~~aR~~l~~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (414)
T PF07959_consen 201 ENT--SNVLKEESELREARQKLWKLLRGTPLNVVPLPNGKFYHFGTSREYLEHLTSDSELGIMRRKFSHSPATTPSDSEA 278 (414)
T ss_pred ccc--CCCcchhHHHHHHHHHHHHHhhhccccccccCCceEEEecCCHHHHHhhccCcccccceeeeeccccccccccCC
Confidence 000 111222233444444332211 1100111111111 111111 0011 111222222222233444
Q ss_pred cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCc
Q 010554 417 ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 477 (507)
Q Consensus 417 ~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~ 477 (507)
++.|.||+| ..+ +.||++++|++|.++.+.+||++|+|.+.+...
T Consensus 279 ~~~VinSil-------------~~~---~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~ 323 (414)
T PF07959_consen 279 SSCVINSIL-------------EGG---VSVGPGSVIEHSHLGGPWSIGSNCIISGVDINS 323 (414)
T ss_pred CeeEEEeEe-------------cCC---ceECCCCEEEeeecCCCCEECCCCEEECCcccc
Confidence 455666665 555 899999999999999999999999999875443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.8e-07 Score=81.73 Aligned_cols=104 Identities=12% Similarity=0.093 Sum_probs=60.9
Q ss_pred CCcCCCceec-ceeee----ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEE
Q 010554 391 PRFLPPTKID-NCRIK----DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKI 464 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~----~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~I 464 (507)
..+.+.+.|+ .+.|. .+.||++|.|+ +|.|.+++.... ...-...++++ +.|+.+++|.+++||++|.|
T Consensus 18 v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~--~~~~~v~IG~~---~~i~~~~~i~~~~IGd~~~I 92 (164)
T cd04646 18 VTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDP--AEPKPMIIGSN---NVFEVGCKCEALKIGNNNVF 92 (164)
T ss_pred eEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCC--CCCCCeEECCC---CEECCCcEEEeeEECCCCEE
Confidence 3344444554 35553 35778888876 566766543100 00001345666 66777888888888888888
Q ss_pred CCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 465 GKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 465 g~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
|.++.|..+..+++. ..|..| ++|.++++|+++++
T Consensus 93 g~~a~I~~gv~Ig~~------~~Igag-svV~~~~~i~~~~v 127 (164)
T cd04646 93 ESKSFVGKNVIITDG------CIIGAG-CKLPSSEILPENTV 127 (164)
T ss_pred eCCCEECCCCEECCC------CEEeCC-eEECCCcEECCCeE
Confidence 888888765444333 344444 55555555655554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PLN02296 carbonate dehydratase | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.3e-07 Score=89.46 Aligned_cols=88 Identities=19% Similarity=0.393 Sum_probs=61.4
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEe-----------eeEeCCCCEECCCcEEecC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIR-----------NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~-----------nsIIg~na~Ig~~~~i~~~ 473 (507)
++.||++|.|. +|.|...+= ...|+++ +.|+++|.|. +|+||+++.||.+++|.+
T Consensus 70 ~V~IG~~~~I~~gavI~g~~~---------~I~IG~~---~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g- 136 (269)
T PLN02296 70 DVQVGRGSSIWYGCVLRGDVN---------SISVGSG---TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHG- 136 (269)
T ss_pred ceEECCCCEECCCCEEEcCCC---------ceEECCC---CEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecC-
Confidence 56677777775 555553310 0134677 7788888774 688999999999988854
Q ss_pred CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 474 DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 474 ~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+.+++...+..+..|.+| ++|++++.|++|++|
T Consensus 137 ~~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 137 CTVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred CEECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 567777777777777777 677888887777754
|
|
| >cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-07 Score=73.09 Aligned_cols=33 Identities=12% Similarity=0.422 Sum_probs=30.4
Q ss_pred ecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecC
Q 010554 438 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
|+++ +.||++++|.+|+|+++++|++++.|.++
T Consensus 20 Ig~~---~~Ig~~~~i~~sii~~~~~i~~~~~i~~s 52 (80)
T cd05824 20 IGPN---VTIGDGVRLQRCVILSNSTVRDHSWVKSS 52 (80)
T ss_pred ECCC---CEECCCcEEeeeEEcCCCEECCCCEEeCC
Confidence 3788 89999999999999999999999999874
|
It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-06 Score=81.15 Aligned_cols=20 Identities=25% Similarity=0.029 Sum_probs=11.8
Q ss_pred cEEEecCCHHHHHHHHHHhh
Q 010554 353 DYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 353 gyw~dIgt~~~y~~An~~ll 372 (507)
.++..++.++...+....+.
T Consensus 61 ~~iiai~~~~~~~~i~~~l~ 80 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLK 80 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHH
Confidence 35666766666655555544
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=87.06 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=14.2
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||+++.|. ++.|+.+|.||++|.|.+...
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~ 133 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGAL 133 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCc
Confidence 3444444443 344444455555555544433
|
|
| >cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.45 E-value=8e-07 Score=82.02 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=49.6
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeee-----------EeCCCCEECCCcEEecC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNC-----------IIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~ns-----------IIg~na~Ig~~~~i~~~ 473 (507)
++.||++|.|. ++.|..+- . ...|+++ +.|+++++|.++ +||+++.|+.++.|.+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~-----~----~i~IG~~---~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~- 83 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEA-----G----PIIIGEN---NIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA- 83 (164)
T ss_pred ceEECCCCEEcCCeEEecCC-----C----CeEECCC---CEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-
Confidence 56677777776 45554220 0 0123666 667777777653 4556655555555554
Q ss_pred CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 474 DDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 474 ~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
..+++......+..|.+| ++||+++.|++|++|
T Consensus 84 ~~IGd~~~Ig~~a~I~~g-v~Ig~~~~IgagsvV 116 (164)
T cd04646 84 LKIGNNNVFESKSFVGKN-VIITDGCIIGAGCKL 116 (164)
T ss_pred eEECCCCEEeCCCEECCC-CEECCCCEEeCCeEE
Confidence 345555555555555555 556666666666653
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=82.62 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=5.7
Q ss_pred EEEcCCCEeCCCc
Q 010554 493 TIIMEKATIEDGM 505 (507)
Q Consensus 493 ~vig~~~~i~~gt 505 (507)
++||+++.|++++
T Consensus 169 ~~ig~~~~i~~~s 181 (205)
T cd03352 169 LTIGDGVVIGAGS 181 (205)
T ss_pred cEECCCCEEcCCC
Confidence 3344444444443
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >PLN02472 uncharacterized protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.2e-07 Score=86.64 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=52.7
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEe-----------eeEeCCCCEECCCcEEecC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIR-----------NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~-----------nsIIg~na~Ig~~~~i~~~ 473 (507)
++.||++|.|. +++|+.. ...| .|+++ +.|++||+|. +++||++|+||.++.|.+
T Consensus 77 ~V~Ig~~a~I~~gavirgd-------~~~I--~IG~~---t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~- 143 (246)
T PLN02472 77 QVTVWDGASVWNGAVLRGD-------LNKI--TVGFC---SNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRS- 143 (246)
T ss_pred CEEECCCCEEcCCCEEecC-------Ccce--EECCC---CEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECC-
Confidence 56666666665 4443321 1111 34555 6677777773 577888888888887764
Q ss_pred CCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 474 DDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 474 ~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.+++...++.+..|-.| ++|++++.|++|++
T Consensus 144 ~~Igd~v~IG~~svI~~g-avIg~~~~Ig~gsv 175 (246)
T PLN02472 144 CTIEPECIIGQHSILMEG-SLVETHSILEAGSV 175 (246)
T ss_pred eEEcCCCEECCCCEECCC-CEECCCCEECCCCE
Confidence 466666666666666555 55666666666654
|
|
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=80.55 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=61.4
Q ss_pred eEEcCCcEEc-cceEeeeeEEeeccCceE--eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCC
Q 010554 407 AIISHGCFLR-ECTVEHSIVDYYQTESEI--ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPE 483 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~Sii~~vg~~~~i--~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~ 483 (507)
+.||++|.|+ +|.|..+.. .+.+..+ ...++++ +.|++++.|.+++|++++.||+++.|.....+++.
T Consensus 43 v~IG~~~~I~~~~~I~~~~~--~~~~~~~~~~v~Ig~~---~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~---- 113 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFK--KFSKGVAFFPLHIGDY---VFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKDC---- 113 (161)
T ss_pred eEECCCcEECCCCEEeCCcc--ccCCCccccCeEECCc---cEECCCCEEEeeEEcCCcEECCCCEEcCCCEECCC----
Confidence 6788888887 677776542 2223323 2567888 89999999999999999999999999876555444
Q ss_pred CCeEEcCCeEEEcCCCEeCCCcc
Q 010554 484 LGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 484 ~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
..+..| ++|+++++|+++++
T Consensus 114 --~~i~~g-~~V~~~~~i~~~~v 133 (161)
T cd03359 114 --VKILDG-TVVPPDTVIPPYSV 133 (161)
T ss_pred --cEECCC-CEECCCCEeCCCCE
Confidence 344445 45555555555554
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=78.98 Aligned_cols=64 Identities=19% Similarity=0.358 Sum_probs=46.3
Q ss_pred eeccCceEe------eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCE
Q 010554 427 YYQTESEIA------SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKAT 500 (507)
Q Consensus 427 ~vg~~~~i~------s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~ 500 (507)
.++.++.+. ..|+++ ++||.++.|..|.|+++|-||-|++|.|++.+++. ++||.++.
T Consensus 58 NIQDg~ViH~~~~~p~~IG~~---vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~-------------~iVgAgal 121 (176)
T COG0663 58 NIQDGVVIHADPGYPVTIGDD---VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDG-------------SIVGAGAL 121 (176)
T ss_pred eecCCeEEecCCCCCeEECCC---cEEcCccEEEEeEECCCcEEecCceEeCCcEECCC-------------cEEccCCc
Confidence 445555552 678888 89999999999999999999999999986543332 55555555
Q ss_pred eCCCcc
Q 010554 501 IEDGMV 506 (507)
Q Consensus 501 i~~gt~ 506 (507)
+++|.+
T Consensus 122 V~~~k~ 127 (176)
T COG0663 122 VTPGKE 127 (176)
T ss_pred ccCCcC
Confidence 555543
|
|
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7e-07 Score=96.50 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=41.2
Q ss_pred eeee-ceEEcCCcEEc-cceEeeeeEE---eeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEE
Q 010554 402 CRIK-DAIISHGCFLR-ECTVEHSIVD---YYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVI 470 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i 470 (507)
+.|. +++||+||.|+ +|.|++|+|+ .++. +.+ .++++++ +.||+++.|. +++|+.+++||.++.+
T Consensus 284 ~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~---~~Ig~~~~i~~~~vIg~~~~ig~~~~~ 355 (482)
T PRK14352 284 TQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG---ATVGPFTYLRPGTVLGEEGKLGAFVET 355 (482)
T ss_pred cEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCC---CEECCCeEecCCcEEcCCCEECCcEEE
Confidence 4443 57899999998 7888888772 2222 223 3666666 6677776665 5666666666554433
|
|
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-06 Score=78.65 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=27.1
Q ss_pred eeeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 445 IGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 445 ~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.|+.++.|.. ++||++|.||.++.|.+ ..+++......+..|. + +.|++++.++++++
T Consensus 71 ~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-~~Ig~~~~Ig~~s~i~-~-~~i~~~~~v~~~~~ 130 (167)
T cd00710 71 VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-AKVGDNCVIGHNAVVD-G-VEIPPGRYVPAGAV 130 (167)
T ss_pred ceECCCCEEeCCEEECCCCEECCCCEEEC-CEECCCCEEcCCCEEe-C-CEeCCCCEECCCCE
Confidence 44444444443 55555555555555543 2333333333333331 2 34455555555543
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=83.48 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=19.0
Q ss_pred eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 456 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
|.|+.++.|+.+|.|++...+........ + ++||+++.|+.++
T Consensus 108 ~~i~~~~~I~hd~~IG~~v~i~~~~~i~g------~-v~Igd~a~Ig~~a 150 (255)
T PRK12461 108 NLLMAYSHVAHDCQIGNNVILVNGALLAG------H-VTVGDRAIISGNC 150 (255)
T ss_pred ceeccCcEECCCCEECCCcEECCCCccCC------c-eEECCCeEEeCCC
Confidence 33344444444444444444433333322 2 4555555555544
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=87.30 Aligned_cols=29 Identities=7% Similarity=-0.020 Sum_probs=14.8
Q ss_pred CcEEEEEeccEEEe-------cCCHHHHHHHHHHhh
Q 010554 344 HDVQAYIFRDYWED-------IGTIKSFYEANMALT 372 (507)
Q Consensus 344 ~~V~~~~~~gyw~d-------Igt~~~y~~An~~ll 372 (507)
.+++.+....|..+ ..+|+.|..+..+++
T Consensus 51 ~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~Di~ 86 (273)
T PRK11132 51 NKLASPIMPAIAIREVVEEAYAADPEMIASAACDIQ 86 (273)
T ss_pred HHhccccCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34444444444443 455555555555554
|
|
| >cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-06 Score=76.93 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=31.5
Q ss_pred ecCCCcceeeCCCcEEee-----eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 438 LAEGKVPIGVGRNTKIRN-----CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~n-----sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
|+++ +.|+++++|.+ ++|++++.|+.+++|.+ ..+++......+..+.++ ++|++++.|++++
T Consensus 41 IG~~---~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~-~~ig~~~~ig~~~ 108 (153)
T cd04645 41 IGER---TNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDG-AVIGKGSIVAAGS 108 (153)
T ss_pred ECCC---CEECCCcEEecCCCCCeEEcCCcEECCCcEEee-eEECCCCEECCCCEEcCC-CEECCCCEECCCC
Confidence 3555 55566665554 36666666666655554 234444444444444433 3444444444443
|
coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. |
| >TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-06 Score=83.05 Aligned_cols=69 Identities=16% Similarity=0.313 Sum_probs=36.3
Q ss_pred eeccCceEe--eeecCCCcceeeCCCcEEe-eeEeC--------CCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEE
Q 010554 427 YYQTESEIA--SLLAEGKVPIGVGRNTKIR-NCIID--------KNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITII 495 (507)
Q Consensus 427 ~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~-nsIIg--------~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vi 495 (507)
++|.++.|. +.|+.+ +.||+||+|. ++.|+ .+++||++|.|+..+.+.+ |..|..| ++|
T Consensus 131 ~IGeGt~I~~~a~IG~~---v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~------GV~IG~g-avI 200 (269)
T TIGR00965 131 YVDEGTMVDTWATVGSC---AQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEIVE------GVIVEEG-SVI 200 (269)
T ss_pred EECCCCEECCCcEECCC---CEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCCEEcC------CCEECCC-CEE
Confidence 345555552 455655 6666666665 34454 4466777776665544433 3334344 444
Q ss_pred cCCCEeCCCc
Q 010554 496 MEKATIEDGM 505 (507)
Q Consensus 496 g~~~~i~~gt 505 (507)
|.+++|++++
T Consensus 201 GaGavI~~~~ 210 (269)
T TIGR00965 201 SMGVFIGQST 210 (269)
T ss_pred eCCCEECCCC
Confidence 4444444444
|
The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89). |
| >TIGR02091 glgC glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-06 Score=89.55 Aligned_cols=67 Identities=34% Similarity=0.524 Sum_probs=58.7
Q ss_pred CCCcCCCceecceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCc
Q 010554 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDV 468 (507)
Q Consensus 390 ~~~~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~ 468 (507)
.+.+.+++.|+.++|.+|+|++||.|+ +|.|.+|+| +++ +.||++++|++|+||++++||.++
T Consensus 294 ~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii-------------~~~---~~v~~~~~l~~~ivg~~~~i~~~~ 357 (361)
T TIGR02091 294 DSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVI-------------MGD---VGIGRGAVIRNAIIDKNVRIGEGV 357 (361)
T ss_pred CCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEE-------------eCC---CEECCCCEEeeeEECCCCEECCCC
Confidence 345667777776678899999999998 789999887 888 899999999999999999999999
Q ss_pred EEec
Q 010554 469 VIVN 472 (507)
Q Consensus 469 ~i~~ 472 (507)
.|+|
T Consensus 358 ~i~~ 361 (361)
T TIGR02091 358 VIGN 361 (361)
T ss_pred EeCC
Confidence 9975
|
This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals. |
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.8e-06 Score=81.91 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=6.7
Q ss_pred eeEeCCCCEECCCcEEe
Q 010554 455 NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~ 471 (507)
+++||++|.||.++.|.
T Consensus 194 Gv~IGdgavIgag~vV~ 210 (272)
T PRK11830 194 GVIVEEGSVLGMGVFLG 210 (272)
T ss_pred CCEECCCCEEcCCCEEc
Confidence 33334444444444433
|
|
| >TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.8e-06 Score=88.55 Aligned_cols=34 Identities=38% Similarity=0.726 Sum_probs=26.3
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|+++++ |.||+||+|.+|+|+++++|++++.+.+
T Consensus 305 s~i~~~---~~I~~~~~i~~sii~~~~~I~~~~~i~~ 338 (369)
T TIGR02092 305 SILSRG---VHVGKDALIKNCIIMQRTVIGEGAHLEN 338 (369)
T ss_pred CEECCC---CEECCCCEEEeeEEeCCCEECCCCEEEE
Confidence 777777 7777777777777777777777777766
|
This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. |
| >PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.3e-05 Score=79.88 Aligned_cols=214 Identities=20% Similarity=0.316 Sum_probs=125.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHh----cCCC-EEEEEecc-CchHHHHHHHhcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQF-NSASLNRHIARTYFG 165 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~----~Gi~-~I~Vv~~~-~~~~l~~~l~~~~~~ 165 (507)
..++.+|+||||.||||. ..-||.|+||.....+++..++.+.. .|.+ -++|.++. ..+...+++.+ |++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg 129 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFG 129 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCG
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcC
Confidence 568899999999999998 57899999997655889988887765 2433 45666654 46778888876 765
Q ss_pred CCcc---cCCCeEEEecCcc-CCCC-------CCCCc-ccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeccCCHH
Q 010554 166 NGTN---FGDGFVEVLAATQ-TPGE-------SGKNW-FQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYM 231 (507)
Q Consensus 166 ~~~~---~~~~~V~vl~~~q-~~~~-------~~~~~-~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~~~dl~ 231 (507)
...+ |.+..+-.+.... .+-+ ....| |-|.||...... ..+++....+.+.+.|.+.|.+...--.
T Consensus 130 ~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp 209 (420)
T PF01704_consen 130 LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDP 209 (420)
T ss_dssp SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-H
T ss_pred CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCH
Confidence 4322 1111121111110 0000 00112 458887554432 2444444467899999999997754334
Q ss_pred HHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCCCc--EEEEEeCCCccccccccccccccCCCccccccCCceeeeE
Q 010554 232 DFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309 (507)
Q Consensus 232 ~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~gr--V~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 309 (507)
.++..+.++++++.+-+.+...+. ..-|++... +|+ |+++.+-|..... ...- .....+.++|
T Consensus 210 ~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~-~G~~~vvEysqip~~~~~-~~~~------------~~~~~~Fntn 274 (420)
T PF01704_consen 210 VFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRY-DGKLQVVEYSQIPKEHMA-EFKD------------IKGFLLFNTN 274 (420)
T ss_dssp HHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEE-TTEEEEEEGGGS-HHGHH-HHTS------------TTTSBEEEEE
T ss_pred HHHHHHHhccchhheeeeecCCCC-CceeEEEEe-CCccEEEEeccCCHHHHH-hhhc------------cccceEEEec
Confidence 688889999999988777654322 234555432 354 5555554432110 0000 0012466888
Q ss_pred EEEEeHHHHHHHHHh
Q 010554 310 VYVFKKDVLFKLLRW 324 (507)
Q Consensus 310 iyif~~~iL~~ll~~ 324 (507)
--.|+-+.|.++++.
T Consensus 275 Ni~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 275 NIWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEEHHHHHHHHHT
T ss_pred eeeEEHHHHHHHHHh
Confidence 889999999988764
|
7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A .... |
| >PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=90.54 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=56.2
Q ss_pred cCCCceecceeeeceEEcCCcEEc-cceEeeeeEE-------------eeccCceEe-eeecCCCcceeeCCCcEEeeeE
Q 010554 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIVD-------------YYQTESEIA-SLLAEGKVPIGVGRNTKIRNCI 457 (507)
Q Consensus 393 ~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii~-------------~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsI 457 (507)
+.+.+.|+++.|.+|+||++|.|+ +|.|.+|+|+ .+|..+.+. |+|+++ |.||.++.+.+.-
T Consensus 285 i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~---~~ig~~~~~~~~~ 361 (430)
T PRK14359 285 IKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEG---TNIGAGTITCNYD 361 (430)
T ss_pred ECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCC---CEECCCceEcccc
Confidence 344555555666788888888887 6777778772 233334442 555555 5566655554310
Q ss_pred e--CCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCC
Q 010554 458 I--DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEK 498 (507)
Q Consensus 458 I--g~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~ 498 (507)
- +.+++||++|.|+....+....++.++..|..| ++|.++
T Consensus 362 ~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g-~~v~~~ 403 (430)
T PRK14359 362 GKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAG-STVTKD 403 (430)
T ss_pred CccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCC-CEEccc
Confidence 0 012555566655555444455555555555555 333343
|
|
| >cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00011 Score=74.09 Aligned_cols=215 Identities=12% Similarity=0.138 Sum_probs=127.4
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc----CCC-EEEEEeccC-chHHHHHHHhcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIARTYFGN 166 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~----Gi~-~I~Vv~~~~-~~~l~~~l~~~~~~~ 166 (507)
+++.+|+||||.||||. ..-||.|+||....+++++.++.+... |.+ -.+|.|++. .+...+++.+..+..
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~ 78 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVN 78 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCc
Confidence 46789999999999996 578999999965448999999988642 432 456667654 566778886421211
Q ss_pred C--cccCCCeEEEecC------ccCCCCCCC-CcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceeccCCHHHHHH
Q 010554 167 G--TNFGDGFVEVLAA------TQTPGESGK-NWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYRMDYMDFIQ 235 (507)
Q Consensus 167 ~--~~~~~~~V~vl~~------~q~~~~~~~-~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~ 235 (507)
. .-|.++.+.-+.. .+....... -.|.|.||...... ..+++....+.+++.+.+.|.+...-=-.++.
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg 158 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILN 158 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHH
Confidence 0 0011111100000 000000111 22457776555331 12333334678999999999977532246888
Q ss_pred HHHHcCCceEEEEEEcCCCCCccceEEEE-CCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEe
Q 010554 236 SHVDRDADITISCAAVGESRASDYGLVKI-DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFK 314 (507)
Q Consensus 236 ~h~~~~a~~tl~~~~~~~~~~~~~g~v~i-d~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~ 314 (507)
.|..+++++++=+.+...+. +.-|++.. |..=+|+++.|-|..... ... + .....+.+++.+.|+
T Consensus 159 ~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~-~~~-~-----------~~~~~~~nt~n~~~~ 224 (300)
T cd00897 159 HMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVD-EFK-S-----------IKKFKIFNTNNLWVN 224 (300)
T ss_pred HHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHH-hhc-C-----------cccceEEEEeEEEEE
Confidence 99999999887665544321 23455443 332357777777754321 000 0 001257899999999
Q ss_pred HHHHHHHHHh
Q 010554 315 KDVLFKLLRW 324 (507)
Q Consensus 315 ~~iL~~ll~~ 324 (507)
-+.|.++++.
T Consensus 225 l~~L~~~~~~ 234 (300)
T cd00897 225 LKAVKRVVEE 234 (300)
T ss_pred HHHHHHHHHh
Confidence 9999887653
|
UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases. |
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.2e-06 Score=73.13 Aligned_cols=69 Identities=13% Similarity=0.219 Sum_probs=36.7
Q ss_pred eeee-ceEEcCCcEEc-cceE-eeeeE---EeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecC
Q 010554 402 CRIK-DAIISHGCFLR-ECTV-EHSIV---DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I-~~Sii---~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
+.|. +++||++|.|+ ++.| .+++| ..++..+.+......+ ..+..++.+.+++|++++.||.++.+.+.
T Consensus 11 ~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~---~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~ 85 (119)
T cd03358 11 VFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR---SKIYRKWELKGTTVKRGASIGANATILPG 85 (119)
T ss_pred cEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc---cccccccccCCcEECCCcEECcCCEEeCC
Confidence 4443 56777777776 4555 34544 1233333332111222 12334455667777788888877777654
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.7e-06 Score=86.39 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=56.9
Q ss_pred CCCCCcccCCCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCC-cEEeeeEe
Q 010554 382 DPKTPFYTSPRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRN-TKIRNCII 458 (507)
Q Consensus 382 ~~~~~i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~-~~I~nsII 458 (507)
.+...+ ..+.+.+|+.|+ +|.|.+++|+++|.|+ +|.|.+|.| .+|+++++ +.|+.+ ++|.+|+|
T Consensus 258 ~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i--------~~s~i~~~---~~i~~~~~~~~~~ii 325 (353)
T TIGR01208 258 GEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEV--------EHSIVLDE---SVIEGVQARIVDSVI 325 (353)
T ss_pred CCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEE--------EeeEEcCC---CEEcCCcceeecCEE
Confidence 444444 444556677776 4777777777777776 455555443 14777999 889988 59999999
Q ss_pred CCCCEECCCcEEec
Q 010554 459 DKNVKIGKDVVIVN 472 (507)
Q Consensus 459 g~na~Ig~~~~i~~ 472 (507)
+++++|+.++.|.+
T Consensus 326 ~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 326 GKKVRIKGNRRRPG 339 (353)
T ss_pred cCCCEECCCccccc
Confidence 99999999999974
|
Alternate name: dTDP-D-glucose synthase |
| >PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-06 Score=90.05 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCcCCCceecceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCC
Q 010554 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEG 441 (507)
Q Consensus 391 ~~~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g 441 (507)
+.+.++|.+.+|.|.+|+|++||.|+ +|.|++|+| +.+|.+++|. |+++++
T Consensus 328 s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~ 383 (425)
T PRK00725 328 SLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG 383 (425)
T ss_pred CEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC
Confidence 33445555555666666666666665 566666666 3455555552 444444
|
|
| >cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=76.15 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=30.2
Q ss_pred eeecCCCcceeeCCCcEEe-----eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 436 SLLAEGKVPIGVGRNTKIR-----NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~-----nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
.+++++ +.|++++.|. ++.|++++.|+.++.|.+...+++......+..+.++ +.||+++.|+.++
T Consensus 93 v~Ig~~---~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~~~ 163 (205)
T cd03352 93 VIIGDD---VEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQV 163 (205)
T ss_pred EEECCC---EEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcCCC
Confidence 344444 5555555553 3455555555555555444444444333333333332 3444444444433
|
This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-06 Score=66.23 Aligned_cols=66 Identities=27% Similarity=0.508 Sum_probs=40.9
Q ss_pred eEEcCCcEEc-cceEee-eeEEeeccCceEeeeecCCCcceeeCCCcEEee---------eEeCCCCEECCCcEEecCCC
Q 010554 407 AIISHGCFLR-ECTVEH-SIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~-Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n---------sIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||++|.|+ ++.|.. ++| +++ +.|++++.|.+ ..|++++.|+.++.+..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~I-------------g~~---~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~--- 61 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVI-------------GDN---VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHG--- 61 (78)
T ss_pred CEECCCeEECCCCEEeCcEEE-------------CCC---CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeC---
Confidence 3566666665 455543 333 666 67777777775 35555555555555543
Q ss_pred CccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 476 VQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 476 ~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+ +.|++++.|+++++|
T Consensus 62 ---------------~-~~ig~~~~i~~~s~v 77 (78)
T cd00208 62 ---------------G-VKIGDNAVIGAGAVV 77 (78)
T ss_pred ---------------C-CEECCCCEECcCcEe
Confidence 3 678888888888764
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.6e-06 Score=73.28 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=8.4
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
++|++++.||.++.|..
T Consensus 76 v~Ig~~~~Ig~~a~I~~ 92 (139)
T cd03350 76 VIIEDDVFIGANCEVVE 92 (139)
T ss_pred eEECCCCEECCCCEECC
Confidence 44455555555555543
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-06 Score=87.20 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=19.1
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|+|+++ |.||++|+|++|||+++|+||+++.|.+
T Consensus 332 svIg~~---~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 332 SVLSPN---VVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred CEECCC---CEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 555555 5555555555555555555555555554
|
|
| >cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=73.53 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=14.5
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.|+.++.|. +++|+++|.||.++.+..
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~ 167 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ 167 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC
Confidence 4455555443 355555555555555544
|
The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. |
| >PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.3e-06 Score=86.24 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=61.6
Q ss_pred cCCCceecceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEee-----eEeCCCC
Q 010554 393 FLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRN-----CIIDKNV 462 (507)
Q Consensus 393 ~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~n-----sIIg~na 462 (507)
+.+.+.|. +.+.+|+||++|.|+ +|.|++|+| +.+|.++.|. |+++++ +.||++++|.+ ++||+++
T Consensus 296 Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~---~~i~~~~~i~~~~~~~~~ig~~~ 371 (380)
T PRK05293 296 VVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN---AVIGDGVIIGGGKEVITVIGENE 371 (380)
T ss_pred ECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC---CEECCCCEEcCCCceeEEEeCCC
Confidence 33344443 245689999999998 789999999 4789999984 999999 89999999998 8999999
Q ss_pred EECCCcEEe
Q 010554 463 KIGKDVVIV 471 (507)
Q Consensus 463 ~Ig~~~~i~ 471 (507)
+|+++++|+
T Consensus 372 ~~~~~~~~~ 380 (380)
T PRK05293 372 VIGVGTVIG 380 (380)
T ss_pred CCCCCcEeC
Confidence 999888773
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=67.36 Aligned_cols=32 Identities=3% Similarity=0.005 Sum_probs=18.0
Q ss_pred ecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 438 LAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|+++ +.|+++++|.+++||++++||+++.++|
T Consensus 65 i~~~---~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 65 IEGY---SNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred EcCC---CEecCcCEEeeeEECCCCEECCCceecc
Confidence 3555 4555555555555555555555555554
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.3e-05 Score=89.37 Aligned_cols=139 Identities=18% Similarity=0.192 Sum_probs=92.8
Q ss_pred eEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCC--CcEEEEEeCCCccccccccccccccC
Q 010554 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNM--GRIAQFAEKPSGANLKAMQVDTSLLG 293 (507)
Q Consensus 216 ~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~--grV~~~~eKp~~~~~~~~~~~~~~~~ 293 (507)
.++|.+||.+..++=. +. .-.+++++......+.+-..+.|++..|.+ +++..+..||..++..++.-
T Consensus 154 g~li~~gDv~~~f~~~--~~--~~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~------ 223 (974)
T PRK13412 154 HTLIASGDVYIRSEQP--LQ--DIPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSK------ 223 (974)
T ss_pred ceEEEecchhhhcccc--cc--CCCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhc------
Confidence 7999999987766521 00 123466666666666666788999999877 68889999998765433221
Q ss_pred CCccccccCCceeeeEEEEEeHHHHHHHHHhhCC------CCCchhhhhHHhhh----------hcCcEEEEEec-cEEE
Q 010554 294 FSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP------TSNDFGSEIIPAAI----------MEHDVQAYIFR-DYWE 356 (507)
Q Consensus 294 ~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~------~~~d~~~dil~~li----------~~~~V~~~~~~-gyw~ 356 (507)
....+.++|+|+|+.+....+++..+. ...|+.+|++..+- +..++...... +.++
T Consensus 224 -------~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~ 296 (974)
T PRK13412 224 -------THLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFY 296 (974)
T ss_pred -------CCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeE
Confidence 123689999999999988777765332 13455666664432 23455555555 5689
Q ss_pred ecCCHHHHHHHHHHh
Q 010554 357 DIGTIKSFYEANMAL 371 (507)
Q Consensus 357 dIgt~~~y~~An~~l 371 (507)
.+||-..|+.....+
T Consensus 297 H~GTs~E~l~~~~~~ 311 (974)
T PRK13412 297 HYGTSRELISSTLAV 311 (974)
T ss_pred EecCcHHHhcCchhH
Confidence 999998888654443
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=98.09 E-value=9e-06 Score=76.65 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=12.9
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
+.|+.++.|. ++.|++++.||.++.+.
T Consensus 142 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~ 169 (201)
T TIGR03570 142 VHIAPGVTLSGGVVIGEGVFIGAGATII 169 (201)
T ss_pred CEECCCCEEeCCcEECCCCEECCCCEEe
Confidence 4444444444 34445555555554444
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.3e-06 Score=81.41 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=55.0
Q ss_pred CcCCCceecc-eeee---ceEEcCCcEEc-cceEeeeeE-EeeccCceE-eeeecCCCcceeeCCCcEE-eeeEeCCCCE
Q 010554 392 RFLPPTKIDN-CRIK---DAIISHGCFLR-ECTVEHSIV-DYYQTESEI-ASLLAEGKVPIGVGRNTKI-RNCIIDKNVK 463 (507)
Q Consensus 392 ~~~~p~~i~~-~~I~---~siIg~gc~I~-~~~I~~Sii-~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I-~nsIIg~na~ 463 (507)
.+.|.++|++ +.|. .++||++|.|+ +|.|.+++. +..+.++.. ..+|+++ |.||.|++| .++.||++|+
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~---V~IGagA~Ilggi~IGd~a~ 238 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDG---VLIGAGATILGNVKIGEGAK 238 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCC---eEECCeeEECCCCEECCCCE
Confidence 3445566763 5564 47899999998 677766554 222333334 3778888 888888888 6788888888
Q ss_pred ECCCcEEec
Q 010554 464 IGKDVVIVN 472 (507)
Q Consensus 464 Ig~~~~i~~ 472 (507)
||.|+++..
T Consensus 239 IGAgSVV~k 247 (294)
T PLN02694 239 IGAGSVVLI 247 (294)
T ss_pred ECCCCEECC
Confidence 888888874
|
|
| >cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.7e-05 Score=67.13 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=32.2
Q ss_pred cCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 439 AEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 439 ~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+++ +.||. .|.+|+|+++++|+.++.|.+ ++||+++.|++++.
T Consensus 51 G~~---~~Ig~--~i~~svi~~~~~i~~~~~lg~--------------------siIg~~v~ig~~~~ 93 (101)
T cd05635 51 GPT---CKIGG--EVEDSIIEGYSNKQHDGFLGH--------------------SYLGSWCNLGAGTN 93 (101)
T ss_pred CCC---CEECC--EECccEEcCCCEecCcCEEee--------------------eEECCCCEECCCce
Confidence 555 55543 456888888888888888765 78899999998875
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.4e-05 Score=72.40 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=53.9
Q ss_pred CCCCcccCCCcCCCceec-ceeee-----ceEEcCCcEEc-cceEe-----eeeE---EeeccCceEe--eeecCCCcce
Q 010554 383 PKTPFYTSPRFLPPTKID-NCRIK-----DAIISHGCFLR-ECTVE-----HSIV---DYYQTESEIA--SLLAEGKVPI 445 (507)
Q Consensus 383 ~~~~i~~~~~~~~p~~i~-~~~I~-----~siIg~gc~I~-~~~I~-----~Sii---~~vg~~~~i~--s~l~~g~~~~ 445 (507)
+...+....++.+.+.|. ++.|. .+.||++|.|+ ++.+. ...| ..++..+.+. +.|+++ +
T Consensus 13 ~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~---~ 89 (167)
T cd00710 13 PTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN---C 89 (167)
T ss_pred CCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC---C
Confidence 333333333334444444 34443 25788888887 45553 2222 2345555553 778877 7
Q ss_pred eeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 446 GVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 446 ~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
.||.++.|.++.||+++.||.++.|.+
T Consensus 90 ~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 90 FIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred EECCCCEEECCEECCCCEEcCCCEEeC
Confidence 888888888888888888888888854
|
They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain. |
| >TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-05 Score=78.18 Aligned_cols=50 Identities=24% Similarity=0.492 Sum_probs=26.9
Q ss_pred ceEEcCCcEEc-cceEe-eeeEEeeccCceEeeeecCCCcceeeCCCcEEee---------eEeCCCCEECCCcEEe
Q 010554 406 DAIISHGCFLR-ECTVE-HSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~-~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n---------sIIg~na~Ig~~~~i~ 471 (507)
+++||++|.|+ ++.|. +++| +++ |.||.++.|.+ ++||+++.||.++.|.
T Consensus 116 ~~~IG~~~~I~~~a~I~~~s~I-------------g~~---~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~ 176 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGRATV-------------GKN---VHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVIL 176 (231)
T ss_pred CeEECCCCEEccccccCCCcEE-------------CCC---cEEcCCcEEccccccccCCCeEECCCcEECCCCEEc
Confidence 46667777776 45553 4444 455 55555555542 4555555555555554
|
Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate. |
| >cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.4e-05 Score=70.05 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=13.4
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~ 473 (507)
+.||+++.|. ++.|++++.|++++.|.+.
T Consensus 82 ~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~ 111 (139)
T cd03350 82 VFIGANCEVVEGVIVGKGAVLAAGVVLTQS 111 (139)
T ss_pred CEECCCCEECCCCEECCCCEEcCCCEEcCC
Confidence 4444444442 4444444444444444443
|
It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs. |
| >PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=85.54 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=56.2
Q ss_pred cCceE-eeeecCCCcceeeCCCcEEeeeEeCC-------------------CCEECCCcEEecCCCCccCCCCCCCeEEc
Q 010554 430 TESEI-ASLLAEGKVPIGVGRNTKIRNCIIDK-------------------NVKIGKDVVIVNKDDVQEADRPELGFYIR 489 (507)
Q Consensus 430 ~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~-------------------na~Ig~~~~i~~~~~~~e~~~~~~~~~i~ 489 (507)
.++.| +|+|+++ |.||+||+|.+|||+. ++.||+||.|.++ .++...+++++..+.
T Consensus 318 ~~~~i~~svi~~~---~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~-ii~~~~~i~~~~~~~ 393 (429)
T PRK02862 318 KNCSIHHSVLGIR---SRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRA-IIDKNARIGNNVRIV 393 (429)
T ss_pred CCcEEEEEEEeCC---cEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEE-EECCCcEECCCcEEe
Confidence 44555 5999999 8999999999999975 7999999999874 677777777777664
Q ss_pred CCe-----------EEEcCC-CEeCCCccC
Q 010554 490 SGI-----------TIIMEK-ATIEDGMVI 507 (507)
Q Consensus 490 ~g~-----------~vig~~-~~i~~gt~i 507 (507)
++. ++|+++ ++|+.++++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 394 NKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred cCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 321 566666 667777654
|
|
| >TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.6e-05 Score=76.08 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=11.8
Q ss_pred Cceecceeee-ceEEcCCcEEccceE
Q 010554 396 PTKIDNCRIK-DAIISHGCFLRECTV 420 (507)
Q Consensus 396 p~~i~~~~I~-~siIg~gc~I~~~~I 420 (507)
.+.+.++.|. ++.|+++|.|.++.|
T Consensus 14 ~a~i~~~~IG~~~~Ig~~a~I~~s~I 39 (204)
T TIGR03308 14 TAELTESKLGRYTEIGERTRLREVAL 39 (204)
T ss_pred CcEEeccEeCCCcEECCCcEEeCCEE
Confidence 3444444443 455555555544443
|
This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein. |
| >cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.2e-05 Score=72.11 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=8.9
Q ss_pred EeCCCCEECCCcEEec
Q 010554 457 IIDKNVKIGKDVVIVN 472 (507)
Q Consensus 457 IIg~na~Ig~~~~i~~ 472 (507)
+||+++.|++++.+.+
T Consensus 74 ~Ig~~~~Ig~~~~i~~ 89 (161)
T cd03359 74 HIGDYVFIGENCVVNA 89 (161)
T ss_pred EECCccEECCCCEEEe
Confidence 4555555555555543
|
Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. |
| >COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00031 Score=73.59 Aligned_cols=214 Identities=16% Similarity=0.270 Sum_probs=128.1
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeec-CcchhhHHHHHHHHhc----CCC-EEEEEeccCchHHH-HHHHhcc
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQFNSASLN-RHIARTY 163 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~-g~ypLId~~L~~l~~~----Gi~-~I~Vv~~~~~~~l~-~~l~~~~ 163 (507)
.-.++.+|+||||.||||. ..-||.+++|. |+ ++++.+.+.+..+ +++ ..+|.++.+.++-. .+....|
T Consensus 102 ~~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y 177 (472)
T COG4284 102 KLGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY 177 (472)
T ss_pred hcCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh
Confidence 3567899999999999998 56899999999 77 9999998877653 443 45677777774443 3444555
Q ss_pred cCCCc-c---cCCCeEE-EecCccC-----CCCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceec-cCCH
Q 010554 164 FGNGT-N---FGDGFVE-VLAATQT-----PGESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY-RMDY 230 (507)
Q Consensus 164 ~~~~~-~---~~~~~V~-vl~~~q~-----~~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~gD~i~-~~dl 230 (507)
++..+ + |.+..+- ++..+.. .+....-+|.|+|+--..... .+++....+.+.+.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 55311 1 1111111 1111100 000011235677754433322 3444445678999999999966 3565
Q ss_pred HHHHHHHHHcCCceEEEEEEcCCCCCccceEEE-ECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceee-e
Q 010554 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVK-IDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVAS-M 308 (507)
Q Consensus 231 ~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~-id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 308 (507)
.++.+|..++.+.++=+...... ..+-|++. .|+.-||+.+.|-|......-+. + .......++ .
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~s-~----------~~~~~~n~Nni 324 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFTS-D----------GKLKYFNTNNI 324 (472)
T ss_pred -HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhcc-c----------cceeeeccccc
Confidence 67888999999887766553332 23456655 77777999999887642211000 0 000112344 7
Q ss_pred EEEEEeHHHHHHH
Q 010554 309 GVYVFKKDVLFKL 321 (507)
Q Consensus 309 Giyif~~~iL~~l 321 (507)
++|+++-+.|.+.
T Consensus 325 ~l~~~~~~~l~~~ 337 (472)
T COG4284 325 WLHLFSVKFLKEA 337 (472)
T ss_pred eeehhHHHHHHhh
Confidence 7888888877543
|
|
| >KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.6e-06 Score=82.78 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=57.9
Q ss_pred cceEee-eeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCC
Q 010554 417 ECTVEH-SIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 491 (507)
Q Consensus 417 ~~~I~~-Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g 491 (507)
+|.|.+ |+| +.++.++++. |+++.+ ..++.++.|+.||+|++++||.|++|.+.+.+++++.+.+.-|+.+|
T Consensus 276 ~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~---~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g 352 (371)
T KOG1322|consen 276 NCSIGPNVVIGPRVRIEDGVRLQDSTILGA---DYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEG 352 (371)
T ss_pred ccEECCCceECCCcEecCceEEEeeEEEcc---ceechhHHHHhhhccccccccCceEEecccEeccceEEecccccccc
Confidence 565554 666 3678899994 999988 89999999999999999999999999998777777666666666555
|
|
| >PLN02241 glucose-1-phosphate adenylyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.7e-05 Score=83.15 Aligned_cols=62 Identities=13% Similarity=0.307 Sum_probs=47.9
Q ss_pred CCcCCCceecceeeeceEEcCCcEEc-cceEeeeeE-E---------------------eeccCceEe-eeecCCCccee
Q 010554 391 PRFLPPTKIDNCRIKDAIISHGCFLR-ECTVEHSIV-D---------------------YYQTESEIA-SLLAEGKVPIG 446 (507)
Q Consensus 391 ~~~~~p~~i~~~~I~~siIg~gc~I~-~~~I~~Sii-~---------------------~vg~~~~i~-s~l~~g~~~~~ 446 (507)
+.+.+++.|+++.|.+|+|+++|.|+ +|.|.+|++ + .+|.++.+. ++++++ +.
T Consensus 316 s~I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~---v~ 392 (436)
T PLN02241 316 SIISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKN---AR 392 (436)
T ss_pred eEEcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCC---CE
Confidence 45677888888889999999999998 799999998 2 456666663 667666 67
Q ss_pred eCCCcEEee
Q 010554 447 VGRNTKIRN 455 (507)
Q Consensus 447 Ig~~~~I~n 455 (507)
||+++.|.+
T Consensus 393 Ig~~~~i~~ 401 (436)
T PLN02241 393 IGKNVVIIN 401 (436)
T ss_pred ECCCcEEec
Confidence 777777753
|
|
| >cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.2e-05 Score=66.82 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=45.8
Q ss_pred cCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeE--EeeccCceE-eeeecCCCcceeeCCCcEEee-eEeCCCCEEC
Q 010554 393 FLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV--DYYQTESEI-ASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIG 465 (507)
Q Consensus 393 ~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii--~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig 465 (507)
+.+.++++ ++.|. +++||++|.|+ ++.+.++.+ ..+...+.+ .+.++++ +.||+++.|.+ ++|++++.|+
T Consensus 19 Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~---~~Ig~~~~v~~~~~ig~~~~i~ 95 (119)
T cd03358 19 IGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRG---ASIGANATILPGVTIGEYALVG 95 (119)
T ss_pred ECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCC---cEECcCCEEeCCcEECCCCEEc
Confidence 33334443 34443 56777777776 345555443 122223344 3677777 77888877754 7777788887
Q ss_pred CCcEEec
Q 010554 466 KDVVIVN 472 (507)
Q Consensus 466 ~~~~i~~ 472 (507)
.++.+..
T Consensus 96 ~~~~v~~ 102 (119)
T cd03358 96 AGAVVTK 102 (119)
T ss_pred cCCEEeC
Confidence 7777754
|
WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. |
| >PRK13627 carnitine operon protein CaiE; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.4e-05 Score=73.22 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=6.0
Q ss_pred eEeCCCCEECCCcEE
Q 010554 456 CIIDKNVKIGKDVVI 470 (507)
Q Consensus 456 sIIg~na~Ig~~~~i 470 (507)
|+|++++.||.++.|
T Consensus 72 siIg~~~~Ig~~a~i 86 (196)
T PRK13627 72 TIVGENGHIGHGAIL 86 (196)
T ss_pred CEECCCCEECCCcEE
Confidence 334444444443333
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.2e-05 Score=72.63 Aligned_cols=15 Identities=7% Similarity=0.074 Sum_probs=8.1
Q ss_pred eEEcCCcEEc-cceEe
Q 010554 407 AIISHGCFLR-ECTVE 421 (507)
Q Consensus 407 siIg~gc~I~-~~~I~ 421 (507)
..||++|.|+ ++.|.
T Consensus 72 ~~IG~~~~Ig~~~~I~ 87 (182)
T PRK10502 72 LTIGDYAWIGDDVWLY 87 (182)
T ss_pred EEECCCeEECCCceec
Confidence 5566666665 34443
|
|
| >COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.8e-05 Score=80.76 Aligned_cols=84 Identities=24% Similarity=0.351 Sum_probs=56.6
Q ss_pred eceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCC
Q 010554 405 KDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPE 483 (507)
Q Consensus 405 ~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~ 483 (507)
...+||.+|.|+ ++.|... +++++| |.||++++|.+|||++||+||+++.|.++ .+++....+
T Consensus 260 gp~~ig~~~~i~~~~~i~~~------------~~ig~~---~~I~~~~~i~~Sii~~~~~i~~~~~i~~s-Ii~~~~~ig 323 (358)
T COG1208 260 GPVVIGPGAKIGPGALIGPY------------TVIGEG---VTIGNGVEIKNSIIMDNVVIGHGSYIGDS-IIGENCKIG 323 (358)
T ss_pred CCEEECCCCEECCCCEECCC------------cEECCC---CEECCCcEEEeeEEEcCCEECCCCEEeee-EEcCCcEEC
Confidence 477888888888 4555431 234899 89999999999999999999999999874 555554433
Q ss_pred CCeEEcCCeEEEcCCCEeCCCcc
Q 010554 484 LGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 484 ~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
... .-.. +++|.++.|.+|++
T Consensus 324 ~~~-~i~d-~~~g~~~~i~~g~~ 344 (358)
T COG1208 324 ASL-IIGD-VVIGINSEILPGVV 344 (358)
T ss_pred Cce-eecc-eEecCceEEcCceE
Confidence 211 1122 44455555555443
|
|
| >cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00036 Score=70.66 Aligned_cols=215 Identities=12% Similarity=0.144 Sum_probs=124.1
Q ss_pred EEEEEcCCCCCcccCCccCCCccceee---cCcchhhHHHHHHHHhcC--------C-CEEEEEecc-CchHHHHHHHh-
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINSG--------I-NKIFVLTQF-NSASLNRHIAR- 161 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI---~g~ypLId~~L~~l~~~G--------i-~~I~Vv~~~-~~~~l~~~l~~- 161 (507)
.+|+||||.||||. ..-||.++|| .|+ .++++..+.+.... . =-++|.|+. +.+...+++.+
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47899999999998 6899999999 477 89999999886532 1 145777764 45667788864
Q ss_pred cccCCCcc----cCCCeEEEec-CccCC----CCC--CCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceec-c
Q 010554 162 TYFGNGTN----FGDGFVEVLA-ATQTP----GES--GKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLY-R 227 (507)
Q Consensus 162 ~~~~~~~~----~~~~~V~vl~-~~q~~----~~~--~~~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~-~ 227 (507)
.||+.... |.+..+-.+. .+... .+. -...|-|.||-..... ..+++....+.+.+.+..-|.+. .
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 33543211 1122222221 00000 000 0122568887655432 12343334677888888888854 3
Q ss_pred CCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE--CCCCc--E--EEEEeCCCcccccc---ccccccccCCCccc
Q 010554 228 MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR--I--AQFAEKPSGANLKA---MQVDTSLLGFSPQE 298 (507)
Q Consensus 228 ~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i--d~~gr--V--~~~~eKp~~~~~~~---~~~~~~~~~~~~~~ 298 (507)
.-.-.++-.+..+++++...+.+... .+.-|++.. ..+|+ | +++.|-+....... ...+. -.+.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~~---- 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTGF---- 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-cccc----
Confidence 33345666677888888776655332 245676643 23444 4 66666543111000 00000 0111
Q ss_pred cccCCceeeeEEEEEeHHHHHHHHHh
Q 010554 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 299 ~~~~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
+..-.+++.++|+-+.+.+.++.
T Consensus 231 ---s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 ---SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ---ccCCCeeeeEEEeHHHHHHHHhh
Confidence 23468999999999988887764
|
UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f |
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=6e-05 Score=71.39 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=16.9
Q ss_pred eeeCCCcEEe---eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR---NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~---nsIIg~na~Ig~~~~i~~ 472 (507)
+.|+++++|. ++.||+||.|+.++.|.+
T Consensus 72 v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~ 102 (192)
T PRK09677 72 VQVNDYVHIACIESITIGRDTLIASKVFITD 102 (192)
T ss_pred CEECCCcEEccCceEEECCCCEECCCeEEEC
Confidence 5566666554 466666666666666653
|
|
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=97.90 E-value=4e-05 Score=64.57 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=17.4
Q ss_pred eeeCCCcE---EeeeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTK---IRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~---I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.|+.++. +..++|++++.|+.++.+..
T Consensus 41 ~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 41 VTLGGKGKGGGKRHPTIGDNVVIGAGAKILG 71 (101)
T ss_pred CEECCCccCCcCCCCEECCCcEEcCCCEEEC
Confidence 55665554 55666666666666666654
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=73.47 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=10.7
Q ss_pred eeecCCCcceeeCCCcEEe
Q 010554 436 SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~ 454 (507)
++++++ |.||.+|.|.
T Consensus 225 avIGhd---s~IG~gasIg 240 (341)
T TIGR03536 225 VMVGKG---SDLGGGCSTM 240 (341)
T ss_pred CEECCC---CEECCCCEEe
Confidence 566666 6677777773
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00058 Score=64.38 Aligned_cols=218 Identities=18% Similarity=0.189 Sum_probs=131.5
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
.+..|+|+|-|..+|.. -|-+.+++|+ |||.|++..+.+++ |++|+|-+ .++.+.+.- +.| |
T Consensus 2 ~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A-~~y-------g 64 (228)
T COG1083 2 MKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEA-KKY-------G 64 (228)
T ss_pred cceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHH-HHh-------C
Confidence 45679999999999986 3899999999 99999999999997 46665544 334443332 222 2
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCe-EEEEcCc--eeccCCHHHHHHHHHHcCCceEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN-VAILCGD--HLYRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~-~lVl~gD--~i~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
.. +.+..+..... + ...|-+++..+...+. ..++ ++++.+- ++...++++.++.+.+...+-.+.+
T Consensus 65 ak-~~~~Rp~~LA~----D-~ast~~~~lh~le~~~-----~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa 133 (228)
T COG1083 65 AK-VFLKRPKELAS----D-RASTIDAALHALESFN-----IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSA 133 (228)
T ss_pred cc-ccccCChhhcc----C-chhHHHHHHHHHHHhc-----cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEE
Confidence 11 11222111110 0 0133345555555443 2344 5555443 3667889999999999888888888
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.+.... + |-.. .+++|.+..+.|.|..... +=.++ ..+..+..+|+++.+.|.+ +
T Consensus 134 ~e~e~~-p--~k~f-~~~~~~~~~~~~~~~~~~r-rQ~Lp-------------k~Y~~NgaiYi~~~~~l~e---~---- 188 (228)
T COG1083 134 VECEHH-P--YKAF-SLNNGEVKPVNEDPDFETR-RQDLP-------------KAYRENGAIYINKKDALLE---N---- 188 (228)
T ss_pred eecccc-h--HHHH-HhcCCceeecccCCccccc-cccch-------------hhhhhcCcEEEehHHHHhh---c----
Confidence 776541 1 1111 1234777777776632210 00111 2366788899999998753 1
Q ss_pred CCchhhhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHhhc
Q 010554 329 SNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~ll~ 373 (507)
..-| ..+...|..+. ...||++..|+..|+..+..
T Consensus 189 ~~~f----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 DCFF----------IPNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred Ccee----------cCCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 1111 12334555553 47899999999999987653
|
|
| >PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.5e-05 Score=77.38 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=13.4
Q ss_pred eEeCCCCEECCCcEEecCCCCccCC
Q 010554 456 CIIDKNVKIGKDVVIVNKDDVQEAD 480 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~~~~~~e~~ 480 (507)
++|+++|.||.++.|..+..+++..
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdga 201 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGS 201 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCC
Confidence 5666666666666664444444433
|
|
| >PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00061 Score=72.83 Aligned_cols=212 Identities=16% Similarity=0.231 Sum_probs=127.2
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhc--------------CCC-EEEEEecc-Cc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------------GIN-KIFVLTQF-NS 152 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~--------------Gi~-~I~Vv~~~-~~ 152 (507)
..++.+|+||||.||||. ..-||.|+||+ ++ .+++...+.+... +.. .++|.|+. ..
T Consensus 114 ~gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred cCCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 367889999999999998 67899999885 67 8999998876431 111 34777764 46
Q ss_pred hHHHHHHHh-cccCCCcccCCCeEEEecCcc-------------CCCCCCCCcccChHHHHHHHHH--HHHhhhcCCCCe
Q 010554 153 ASLNRHIAR-TYFGNGTNFGDGFVEVLAATQ-------------TPGESGKNWFQGTADAVRQFTW--VFEDAKNRNIEN 216 (507)
Q Consensus 153 ~~l~~~l~~-~~~~~~~~~~~~~V~vl~~~q-------------~~~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~ 216 (507)
+...+++.+ .||+.... .|.+..... .+. .-...|.|.||-...... .+++....+.+.
T Consensus 190 ~~T~~ff~~~~~FGl~~~----~V~fF~Q~~~P~~~~dg~i~l~~~~-~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~y 264 (493)
T PLN02435 190 EATRKFFESHKYFGLEAD----QVTFFQQGTLPCVSKDGKFIMETPF-KVAKAPDGNGGVYAALKSSRLLEDMASRGIKY 264 (493)
T ss_pred HHHHHHHHhCCCCCCCcc----ceEEEecCCcceECCCCCcccCCCc-ccccCCCCCcHHHHHHHHCCcHHHHHhcCCEE
Confidence 677888864 33553211 122211000 000 001235688876664422 344444567899
Q ss_pred EEEEcCcee-ccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE-CCCCc--EEEEEeCCCcccccccccccccc
Q 010554 217 VAILCGDHL-YRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGR--IAQFAEKPSGANLKAMQVDTSLL 292 (507)
Q Consensus 217 ~lVl~gD~i-~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i-d~~gr--V~~~~eKp~~~~~~~~~~~~~~~ 292 (507)
+.+.+-|.+ ...---.++-.+..+++++.+-+.+...+ ...-|++.. +.+|+ |+.+.|-+....... .-++..|
T Consensus 265 i~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~-~~~~g~L 342 (493)
T PLN02435 265 VDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASAI-NQQTGRL 342 (493)
T ss_pred EEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhcc-Ccccccc
Confidence 999999995 43333567888889999987766544321 133576654 34555 666666553221100 0001111
Q ss_pred CCCccccccCCceeeeEEEEEeHHHHHHHHH
Q 010554 293 GFSPQEARKCPYVASMGVYVFKKDVLFKLLR 323 (507)
Q Consensus 293 ~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~ 323 (507)
.....+++.++|+-++|.++.+
T Consensus 343 ---------~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 ---------RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ---------ccchhhHHHhhccHHHHHHHHH
Confidence 1256788899999999988754
|
|
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.6e-05 Score=69.09 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=19.3
Q ss_pred eeecCCCcceeeCCCcEEee-eEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~ 472 (507)
.+|+++ |.||.+++|.. +.||+++.||+++.+..
T Consensus 114 ~~Ig~~---v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 114 PTVGEG---VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred CEECCC---cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 345555 55666665553 55666666666665553
|
Cysteine biosynthesis |
| >cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X) | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.8e-05 Score=58.86 Aligned_cols=64 Identities=25% Similarity=0.364 Sum_probs=30.8
Q ss_pred Cceec-ceeeec-eEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEee-eEeCCCCEECCCcEEe
Q 010554 396 PTKID-NCRIKD-AIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 396 p~~i~-~~~I~~-siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig~~~~i~ 471 (507)
.+.+. ++.|.. +.||++|.|+ ++.+.++.. .....++.||+++.|.. |+|..+++||+++.|.
T Consensus 6 ~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-------------~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~ 72 (78)
T cd00208 6 GVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATG-------------PNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIG 72 (78)
T ss_pred CeEECCCCEEeCcEEECCCCEECCCCEEEeccC-------------CCccCCcEECCCcEECCCCEEeCCCEECCCCEEC
Confidence 34444 255543 6677777776 455555422 00001144555555542 5555555555555554
Q ss_pred c
Q 010554 472 N 472 (507)
Q Consensus 472 ~ 472 (507)
.
T Consensus 73 ~ 73 (78)
T cd00208 73 A 73 (78)
T ss_pred c
Confidence 3
|
Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms. |
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00016 Score=71.74 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=8.4
Q ss_pred eEeCCCCEECCCcEE
Q 010554 456 CIIDKNVKIGKDVVI 470 (507)
Q Consensus 456 sIIg~na~Ig~~~~i 470 (507)
+.||++|.||.|+.|
T Consensus 226 V~IGe~~~IGagA~I 240 (319)
T TIGR03535 226 ISIGERCLLGANSGL 240 (319)
T ss_pred EEECCCcEECCCCEE
Confidence 455555555555555
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0012 Score=61.57 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=58.9
Q ss_pred CCccceeecC--cchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcc
Q 010554 115 AATPAVPVAG--CYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWF 192 (507)
Q Consensus 115 ~PK~LlPI~g--~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~ 192 (507)
.+|+|+|+.| + |||+|+++.+. ..+++|+|+++.+. . +. ..+ +.++.. ... .
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~--------~~----~~~---~~~i~d-~~~-------g 56 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-P--------LP----ELP---APVLRD-ELR-------G 56 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-c--------cc----cCC---CCEecc-CCC-------C
Confidence 5899999999 9 99999999876 56899999997642 1 10 011 234431 211 1
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-ccCC-HHHHHHHHHH
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-YRMD-YMDFIQSHVD 239 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~~~d-l~~ll~~h~~ 239 (507)
+|...++..+.....+ ...+.++|+.||+- ...+ +..+++.+..
T Consensus 57 ~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 57 LGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 3555555544433211 12478999999993 3443 5666665433
|
|
| >COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00016 Score=66.39 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=32.0
Q ss_pred eeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccCCCCCCC
Q 010554 427 YYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELG 485 (507)
Q Consensus 427 ~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~ 485 (507)
.+|.++.|. ..+.-| |+||++|.|. +++|.++|+||++|.|+-+..+.+..++..+
T Consensus 74 ~IG~~vtIGH~aivHG---c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~ 131 (176)
T COG0663 74 TIGDDVTIGHGAVVHG---CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGG 131 (176)
T ss_pred EECCCcEEcCccEEEE---eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCC
Confidence 456666662 334455 5666666665 5666666666666666665555554444433
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=68.03 Aligned_cols=28 Identities=39% Similarity=0.470 Sum_probs=12.7
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.||++|.|. +|+|.++++||+||+|+.
T Consensus 119 v~IG~~~~Ig~~a~I~~gv~Ig~~~~Vga 147 (169)
T cd03357 119 ITIGDNVWIGGGVIILPGVTIGDNSVIGA 147 (169)
T ss_pred cEeCCCEEECCCCEEeCCCEECCCCEECC
Confidence 4444444442 344444444444444443
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=61.19 Aligned_cols=18 Identities=11% Similarity=0.219 Sum_probs=11.1
Q ss_pred ceEEcCCcEEc-cceEeee
Q 010554 406 DAIISHGCFLR-ECTVEHS 423 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~S 423 (507)
++.||++|.|+ +|.|.++
T Consensus 21 ~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 21 GITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred ceEECCCCEECCCCEEECC
Confidence 46677777776 4556544
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=68.00 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=15.5
Q ss_pred eeeCCCcEE-eeeEeCCCCEECCCcEEecC
Q 010554 445 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 445 ~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~~ 473 (507)
+.||+++.| .+|+|.++++||++++|..+
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~vIgag 159 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNVVVASG 159 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCCEECCC
Confidence 455555555 34555555555555555443
|
|
| >PRK11132 cysE serine acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00067 Score=67.40 Aligned_cols=75 Identities=21% Similarity=0.372 Sum_probs=35.7
Q ss_pred CcCCCceecc-eeee---ceEEcCCcEEc-cceEeeeeEEeecc---CceE-eeeecCCCcceeeCCCcEEe-eeEeCCC
Q 010554 392 RFLPPTKIDN-CRIK---DAIISHGCFLR-ECTVEHSIVDYYQT---ESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKN 461 (507)
Q Consensus 392 ~~~~p~~i~~-~~I~---~siIg~gc~I~-~~~I~~Sii~~vg~---~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~n 461 (507)
.+.|.++|++ +.|. ..+||++|.|+ +|.|-+.+. +|. +... ...|+++ |.||.|++|. ++.||+|
T Consensus 143 dI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~Vt--iGg~~~~~~~~~p~IGd~---V~IGaga~Ilggv~IG~~ 217 (273)
T PRK11132 143 DIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVT--LGGTGKTSGDRHPKIREG---VMIGAGAKILGNIEVGRG 217 (273)
T ss_pred EecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcE--EecCcccCCCcCCEECCC---cEEcCCCEEcCCCEECCC
Confidence 3344455553 3332 34666666666 455543322 221 1111 1445555 5555555554 3555555
Q ss_pred CEECCCcEEe
Q 010554 462 VKIGKDVVIV 471 (507)
Q Consensus 462 a~Ig~~~~i~ 471 (507)
|+||.|+.+.
T Consensus 218 a~IGAgSvV~ 227 (273)
T PRK11132 218 AKIGAGSVVL 227 (273)
T ss_pred CEECCCCEEC
Confidence 5555555554
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00024 Score=72.67 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=50.0
Q ss_pred cCCCceecc-eeee---ceEEcCCcEEc-cceEeeeeE-EeeccCceE-eeeecCCCcceeeCCCcEE-eeeEeCCCCEE
Q 010554 393 FLPPTKIDN-CRIK---DAIISHGCFLR-ECTVEHSIV-DYYQTESEI-ASLLAEGKVPIGVGRNTKI-RNCIIDKNVKI 464 (507)
Q Consensus 393 ~~~p~~i~~-~~I~---~siIg~gc~I~-~~~I~~Sii-~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I-~nsIIg~na~I 464 (507)
+.|.++|++ ..|. .++||++|.|+ +|.|.+++. +..+.+... ...|+++ |.||.|+.| .+..||++++|
T Consensus 229 I~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~---V~IGagA~IlggV~IGdga~I 305 (360)
T PLN02357 229 IHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDG---VLIGAGTCILGNITIGEGAKI 305 (360)
T ss_pred eCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCC---eEECCceEEECCeEECCCCEE
Confidence 344455653 4443 35677777777 466655443 222222222 3778888 889999888 47889999999
Q ss_pred CCCcEEec
Q 010554 465 GKDVVIVN 472 (507)
Q Consensus 465 g~~~~i~~ 472 (507)
|.|+++..
T Consensus 306 GAgSVV~~ 313 (360)
T PLN02357 306 GAGSVVLK 313 (360)
T ss_pred CCCCEECc
Confidence 99998875
|
|
| >PLN02357 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=74.01 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=11.9
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
+++||+|+.||.|+.|.+
T Consensus 278 ~piIGd~V~IGagA~Ilg 295 (360)
T PLN02357 278 HPKIGDGVLIGAGTCILG 295 (360)
T ss_pred CceeCCCeEECCceEEEC
Confidence 466777777777766654
|
|
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0002 Score=64.02 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=15.6
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCC----CEECCCcEEe
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKN----VKIGKDVVIV 471 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~n----a~Ig~~~~i~ 471 (507)
.+..+ |.||+++.|. +.+..+ ++||++|.|+
T Consensus 49 ~Ighd---~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 49 IVGKG---SDVGGGASIM-GTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred EECCC---CEECCCCEEE-EECCCCcccCEEECCCCEEC
Confidence 34555 5666666666 333333 4444444444
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00021 Score=68.10 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=13.6
Q ss_pred CCCcCCCceecceeeeceEEcCCcEEc-cceE
Q 010554 390 SPRFLPPTKIDNCRIKDAIISHGCFLR-ECTV 420 (507)
Q Consensus 390 ~~~~~~p~~i~~~~I~~siIg~gc~I~-~~~I 420 (507)
.+.+.||.++... .+..||++|+|. +|.|
T Consensus 61 ~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I 90 (203)
T PRK09527 61 NAWVEPPVYFSYG--SNIHIGRNFYANFNLTI 90 (203)
T ss_pred CcEEcCCEEEeeC--CCcEEcCCcEECCCcEE
Confidence 3445555554310 244566666555 4444
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00035 Score=59.53 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=17.1
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||++|.|. +|+|..+++||+++.|..++.
T Consensus 57 v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~ 88 (107)
T cd05825 57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGARSV 88 (107)
T ss_pred EEECCCCEECCCCEECCCCEECCCCEECCCCE
Confidence 5555555554 455555555555555555443
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0012 Score=63.26 Aligned_cols=181 Identities=23% Similarity=0.267 Sum_probs=101.6
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
.|||.|=|..+||.- |.|.|++|+ |||+|+++.+.++ .+++|+|.|.. +.+.+.+. .| + ..
T Consensus 1 iaiIpAR~gS~rlp~------Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~-~~-------g-~~ 62 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG------KNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAE-EY-------G-AK 62 (217)
T ss_dssp EEEEEE-SSSSSSTT------GGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHH-HT-------T-SE
T ss_pred CEEEecCCCCCCCCc------chhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHH-Hc-------C-Ce
Confidence 389999999999964 999999999 9999999999997 57998887754 34444443 22 2 12
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHHHHcCCc-eEEEEEEc
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDAD-ITISCAAV 251 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h~~~~a~-~tl~~~~~ 251 (507)
+.+... .. ..++......+..+.. ...+.++.+.||.-+ + ..+..+++.+++..++ +.-...+.
T Consensus 63 v~~~~~-~~--------~~~~~r~~~~~~~~~~----~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~ 129 (217)
T PF02348_consen 63 VIFRRG-SL--------ADDTDRFIEAIKHFLA----DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPV 129 (217)
T ss_dssp EEE--T-TS--------SSHHHHHHHHHHHHTC----STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEE
T ss_pred eEEcCh-hh--------cCCcccHHHHHHHhhh----hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccc
Confidence 322221 11 1244433333333322 112378888999944 3 4578899999888776 22223332
Q ss_pred CC----CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHH-HHHH
Q 010554 252 GE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFK 320 (507)
Q Consensus 252 ~~----~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~-iL~~ 320 (507)
.. .+.... ....+.++....+.+.+....... +... ...++...++|.++.. .+..
T Consensus 130 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~~~~~~ 190 (217)
T PF02348_consen 130 GSSVEIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRN-----------PEEF-KYFYIRQVGIYAFRKEMFLER 190 (217)
T ss_dssp CSHHHHTSTTST-EEEECTTSBEEEEESSESSECHHH-----------HCSS-SSTEEEEEEEEEEEHHHHHHH
T ss_pred cchhhcccccce-EEEeccccchhhcccCCCcccccc-----------cccc-ccccccccccccccccccccc
Confidence 21 111111 223344555555555443211000 0000 0125778999999997 4443
|
7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C .... |
| >cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00053 Score=61.37 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=23.2
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCcc
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQE 478 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e 478 (507)
.++++ +.||.|+.| +..||+|++||+++.+.....+.+
T Consensus 75 ~IG~~---~~IG~ga~I-gv~IG~~~vIGaGsvV~k~t~i~~ 112 (147)
T cd04649 75 SIGKR---CLLGANSGI-GISLGDNCIVEAGLYVTAGTKVTL 112 (147)
T ss_pred EECCC---CEECCCCEE-eEEECCCCEECCCCEEeCCeEEEE
Confidence 44555 566666666 566677777777776665544433
|
THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif. |
| >COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0012 Score=62.49 Aligned_cols=115 Identities=21% Similarity=0.344 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCch--HHHHHHHhcccCCCcccC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSA--SLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~--~l~~~l~~~~~~~~~~~~ 171 (507)
+.+||-|-=.+|||.- |.|+|+++. |||+++|+++..+ -+++|+|.|+...+ .|..+..+ .|
T Consensus 4 I~~IiQARmgStRLpg------KvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~--------~G 68 (241)
T COG1861 4 ILVIIQARMGSTRLPG------KVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS--------HG 68 (241)
T ss_pred EEEEeeecccCccCCc------chhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH--------cC
Confidence 3444444445677753 999999999 9999999999987 47899999975543 34444431 12
Q ss_pred CCeEEEecCccCCCCCCCCcccChH-HHHHHHHHHHHhhhcCCCCeEEEEcCce-eccCCH-HHHHHHHHHcCCce
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTA-DAVRQFTWVFEDAKNRNIENVAILCGDH-LYRMDY-MDFIQSHVDRDADI 244 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta-~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~~dl-~~ll~~h~~~~a~~ 244 (507)
+.+. +|.. +.|..+...++. ...+.++=+.||. +.+..+ ..+++.|.++|+|.
T Consensus 69 ---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 69 ---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred ---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 3333 3554 445555555542 3346788899999 445554 78899999999874
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00024 Score=72.17 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=34.1
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeec-cCce---EeeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQ-TESE---IASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg-~~~~---i~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
.++||++|.|+ +|.|.+.+. +| ++.+ -...|+++ |.||.|++|. ++.||+||+||.|+++..
T Consensus 225 GVVIG~~avIGdnv~I~~gVT--IGg~g~~~g~r~p~IGd~---V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 225 GVVIGETAVIGDRVSILHGVT--LGGTGKETGDRHPKIGDG---ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred ceEECCCCEECCCCEEcCCce--eCCcCCcCCCCCcEECCC---CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 45666666666 455543322 11 1111 11455666 6677776664 566777777777776653
|
|
| >cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00037 Score=59.02 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=9.5
Q ss_pred eeee-ceEEcCCcEEcc
Q 010554 402 CRIK-DAIISHGCFLRE 417 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~~ 417 (507)
..|. ++.|+++|.|.+
T Consensus 22 v~IG~~~~Ig~~~~i~~ 38 (109)
T cd04647 22 ITIGDNVLIGPNVTIYD 38 (109)
T ss_pred eEECCCCEECCCCEEEC
Confidence 4453 466777776653
|
MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form. |
| >TIGR01172 cysE serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00074 Score=62.15 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=12.3
Q ss_pred eeEeCCCCEECCCcEEecC
Q 010554 455 NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~ 473 (507)
.++||++|.||.++.|.+.
T Consensus 113 ~~~Ig~~v~Ig~~a~I~~~ 131 (162)
T TIGR01172 113 HPTVGEGVMIGAGAKVLGN 131 (162)
T ss_pred CCEECCCcEEcCCCEEECC
Confidence 3566777777777776653
|
Cysteine biosynthesis |
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0005 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=22.8
Q ss_pred eecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 437 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
.++++ +.||.++.|. ++.||+++.||.++.+..
T Consensus 94 ~IGd~---~~Ig~~~~I~~~v~IG~~~~Igags~V~~ 127 (146)
T PRK10191 94 HIGNG---VELGANVIILGDITIGNNVTVGAGSVVLD 127 (146)
T ss_pred EECCC---cEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 45666 6677777776 477777777777777764
|
|
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=64.12 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=4.7
Q ss_pred ceeeCCCcEEe
Q 010554 444 PIGVGRNTKIR 454 (507)
Q Consensus 444 ~~~Ig~~~~I~ 454 (507)
|+.||+||.|.
T Consensus 182 Pv~IgdncliG 192 (271)
T COG2171 182 PVIIGDNCLIG 192 (271)
T ss_pred CeEECCccEec
Confidence 34444444443
|
|
| >PRK10502 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00098 Score=62.54 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=13.1
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.||+++.|. +|+|..+++||+++.|+.
T Consensus 125 i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga 153 (182)
T PRK10502 125 IVIGEGCWLAADVFVAPGVTIGSGAVVGA 153 (182)
T ss_pred EEEcCCcEEcCCCEEcCCCEECCCCEECC
Confidence 3444444443 344444444544444443
|
|
| >KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.037 Score=57.07 Aligned_cols=186 Identities=14% Similarity=0.285 Sum_probs=104.0
Q ss_pred CCCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc----CCCE-EEEEeccCchHHHHHHHhccc
Q 010554 90 VDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS----GINK-IFVLTQFNSASLNRHIARTYF 164 (507)
Q Consensus 90 ~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~----Gi~~-I~Vv~~~~~~~l~~~l~~~~~ 164 (507)
..-+++..+=|-||.||-|. -.-||.+++|-+-+..+|-++....+. +++- .++..+++-++--+.+.+.|-
T Consensus 99 ~~L~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 99 SLLNKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred HhhhheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 34456777789999999998 578999999987668888777666543 4442 344556665544444445553
Q ss_pred CCCc--------ccCCCeE-EEecCccCCCC-CCCCcc-cChHHHHHHH--HHHHHhhhcCCCCeEEEEcCceec-cCCH
Q 010554 165 GNGT--------NFGDGFV-EVLAATQTPGE-SGKNWF-QGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLY-RMDY 230 (507)
Q Consensus 165 ~~~~--------~~~~~~V-~vl~~~q~~~~-~~~~~~-~Gta~AL~~~--~~~l~~~~~~~~~~~lVl~gD~i~-~~dl 230 (507)
+... +|..-.. +.++.....++ +-..|| -|.|+-.... ...++.....+.+.++|-+.|.+. ..||
T Consensus 176 ~~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL 255 (498)
T KOG2638|consen 176 GSKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL 255 (498)
T ss_pred CCceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH
Confidence 3221 2221111 12222110111 123464 5777544322 123333334678999999999987 4666
Q ss_pred HHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCCCcEEEEEeCCCc
Q 010554 231 MDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSG 279 (507)
Q Consensus 231 ~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~ 279 (507)
.++++..+.+....|-+++-.......-.++..+..-|++.+..-|..
T Consensus 256 -~ILn~~i~~~~ey~MEvTdKT~aDvKgGtLi~y~G~lrlLEiaQVP~e 303 (498)
T KOG2638|consen 256 -NILNHVINNNIEYLMEVTDKTRADVKGGTLIQYEGKLRLLEIAQVPKE 303 (498)
T ss_pred -HHHHHHhcCCCceEEEecccchhhcccceEEeecCEEEEEEeccCChh
Confidence 567777777777666665443321111223333322345566555543
|
|
| >PLN02694 serine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0008 Score=67.04 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=15.5
Q ss_pred cEEeeeEeCCCCEECCCcEEecC
Q 010554 451 TKIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 451 ~~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
+..++++||+||.||.|++|.+.
T Consensus 208 ~~~r~piIGd~V~IGagA~Ilgg 230 (294)
T PLN02694 208 CGDRHPKIGDGVLIGAGATILGN 230 (294)
T ss_pred cCCCccEECCCeEECCeeEECCC
Confidence 33456777777777777777543
|
|
| >PRK10191 putative acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0012 Score=59.54 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=20.2
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDV 476 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~ 476 (507)
+.||+++.|. +|.|..+++||+++.|+.+..+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 4567776665 5666666666666666665443
|
|
| >PLN02830 UDP-sugar pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0087 Score=65.99 Aligned_cols=221 Identities=14% Similarity=0.145 Sum_probs=126.1
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhc-----------CC-CEEEEEeccC-chHHH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-----------GI-NKIFVLTQFN-SASLN 156 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~-----------Gi-~~I~Vv~~~~-~~~l~ 156 (507)
.++..|.||||.||||. ..-||.++|++ |+ ++++..++.+... +. =-++|.|+++ .+...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 68889999999999998 57899999983 67 8999999887553 11 1357777654 56677
Q ss_pred HHHHhc-ccCCCcc----cCCCeEEEecCc-cCCC------CCCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcC
Q 010554 157 RHIART-YFGNGTN----FGDGFVEVLAAT-QTPG------ESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCG 222 (507)
Q Consensus 157 ~~l~~~-~~~~~~~----~~~~~V~vl~~~-q~~~------~~~~~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~g 222 (507)
+++.+. ||+.... |.++.+-.+... ...- ..-.-.|-|.||-.+... ..+++....+.+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 777642 3543211 111111111100 0000 000123567776555442 2344444467899999999
Q ss_pred ceec-cCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE--CCCCc----EEEEEeCCCccccccccccccccCCC
Q 010554 223 DHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGR----IAQFAEKPSGANLKAMQVDTSLLGFS 295 (507)
Q Consensus 223 D~i~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i--d~~gr----V~~~~eKp~~~~~~~~~~~~~~~~~~ 295 (507)
|.+. ..-.-.++-.+..+++++.+-+.+... ...-|++.. ..+|+ ++++.|.+.... ..+.+..-+...
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~--~a~~p~g~l~~~ 358 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLR--ATGHPDGDVNDE 358 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHH--hccCCCcccccc
Confidence 9933 333378888999999998887766533 234565553 23344 345555543211 111111111100
Q ss_pred ccccccCCceeeeEEEEEeHHHHHHHHHh
Q 010554 296 PQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 296 ~~~~~~~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
.. -+..=.|+...+++-..+.+.|+.
T Consensus 359 ~~---~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 359 TG---YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred cc---cccCCCCceeeEeeHHHHHHHHHh
Confidence 00 011124888888998888888764
|
|
| >PRK09527 lacA galactoside O-acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=62.67 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=17.8
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||+++.|. +|+|.++++||++++|..+..
T Consensus 132 i~IGd~v~IG~~~~I~~gv~IG~~~vIgagsv 163 (203)
T PRK09527 132 ITIGNNVWIGSHVVINPGVTIGDNSVIGAGSV 163 (203)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCE
Confidence 5566665554 455666666666666655443
|
|
| >PLN02739 serine acetyltransferase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0009 Score=68.07 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=11.5
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
.++||+||.||.|++|..
T Consensus 257 ~p~IGd~V~IGagA~IlG 274 (355)
T PLN02739 257 HPKIGDGALLGACVTILG 274 (355)
T ss_pred CcEECCCCEEcCCCEEeC
Confidence 356666666666666654
|
|
| >TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0026 Score=63.38 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=8.6
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
..||++++|++|++
T Consensus 242 I~IGd~~VVGAGaV 255 (319)
T TIGR03535 242 ISLGDDCVVEAGLY 255 (319)
T ss_pred eEECCCCEECCCCE
Confidence 34566666666654
|
Alternate name: tetrahydrodipicolinate N-succinyltransferase. |
| >TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0012 Score=66.13 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=9.2
Q ss_pred eEeCCCCEECCCcEE
Q 010554 456 CIIDKNVKIGKDVVI 470 (507)
Q Consensus 456 sIIg~na~Ig~~~~i 470 (507)
+.||++|.||.|+.|
T Consensus 251 V~IGe~~lIGagA~I 265 (341)
T TIGR03536 251 ISVGEGCLLGANAGI 265 (341)
T ss_pred EEECCCcEECCCCEE
Confidence 556666666666665
|
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway. |
| >COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0026 Score=62.08 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=11.2
Q ss_pred eeeCCCc-EEeeeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNT-KIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~-~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|-||.|+ .+..+++|+||.|+.|+.|..
T Consensus 189 cliGAns~~veGV~vGdg~VV~aGv~I~~ 217 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVAAGVFITQ 217 (271)
T ss_pred cEeccccceEeeeEeCCCcEEecceEEeC
Confidence 3344443 333344444444444444433
|
|
| >cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0022 Score=54.60 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=8.9
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
.+|+++|.||.++.|..
T Consensus 57 v~Ig~~~~ig~~~~i~~ 73 (107)
T cd05825 57 IVIGDGAWVAAEAFVGP 73 (107)
T ss_pred EEECCCCEECCCCEECC
Confidence 45555555555555543
|
coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms. |
| >COG1043 LpxA Acyl-[acyl carrier protein] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0042 Score=59.58 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=17.4
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~ 473 (507)
+.||+|.-+. ++-|..+|+||++|++.|.
T Consensus 107 T~IGdnnl~May~HVAHDC~iGn~~ilaNn 136 (260)
T COG1043 107 TRIGDNNLIMAYAHVAHDCVIGNNCILANN 136 (260)
T ss_pred EEECCCCEEEEeeeeeccceecCcEEEecC
Confidence 4455554443 5666666666777776664
|
|
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00078 Score=45.32 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=10.1
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEE
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVI 470 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i 470 (507)
+.|+.++.|. +|+|++++.|++++.|
T Consensus 8 ~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 8 VIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEECCCcEecCCCEECCCCEEcCCCEE
Confidence 3444444432 3444444444444443
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.004 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=13.1
Q ss_pred CeEEcCCeEEEcCCCEeCCCccC
Q 010554 485 GFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 485 ~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+..+..+ ++|+++++|+++++|
T Consensus 66 ~~~i~~~-~~Ig~~~~i~~~~~i 87 (101)
T cd03354 66 GAKILGN-ITIGDNVKIGANAVV 87 (101)
T ss_pred CCEEECc-CEECCCCEECCCCEE
Confidence 3444445 556777777776653
|
This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain. |
| >KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.002 Score=63.40 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=17.6
Q ss_pred eeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
++||+|++|++|||-++|.|.+|+.+.+
T Consensus 313 vrvg~GvRl~~sIIl~d~ei~enavVl~ 340 (407)
T KOG1460|consen 313 VRVGPGVRLRESIILDDAEIEENAVVLH 340 (407)
T ss_pred ceecCCceeeeeeeccCcEeeccceEEe
Confidence 5566666666666666666666666655
|
|
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0037 Score=58.25 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=40.3
Q ss_pred eEEcCCcEEc-cceEeeeeE-EeeccCc-eEeeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 407 AIISHGCFLR-ECTVEHSIV-DYYQTES-EIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~Sii-~~vg~~~-~i~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
.+||+-|.|+ +|.|.+.+- +..|.++ ...=.|++| +.||.|++|- |=-||+|++||+|+++..
T Consensus 88 vVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 88 VVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred EEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCC---eEECCCCEEEcceEECCCCEECCCceEcc
Confidence 4566666666 455555443 1111111 122456787 8899988875 667899999999999875
|
|
| >cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0062 Score=56.32 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=11.2
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
.+.||++|.||.++.|..
T Consensus 118 ~v~IG~~~~Ig~~a~I~~ 135 (169)
T cd03357 118 PITIGDNVWIGGGVIILP 135 (169)
T ss_pred CcEeCCCEEECCCCEEeC
Confidence 356666666666666654
|
MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). |
| >COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.008 Score=56.08 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=11.4
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
.--||+|+.||+|+.|-.
T Consensus 119 hPtIg~~V~IGagAkILG 136 (194)
T COG1045 119 HPTIGNGVYIGAGAKILG 136 (194)
T ss_pred CCccCCCeEECCCCEEEc
Confidence 346666777777766654
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0014 Score=57.60 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=20.4
Q ss_pred eeeCCCcEEeeeEeCCCCEECCCcEEecCCCCc
Q 010554 445 IGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 477 (507)
Q Consensus 445 ~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~ 477 (507)
+-|+++|++.-.-||.-+.+|+|++|++.+++.
T Consensus 91 VFieE~cVVnAAqIgsyVh~GknaviGrrCVlk 123 (184)
T KOG3121|consen 91 VFIEEECVVNAAQIGSYVHLGKNAVIGRRCVLK 123 (184)
T ss_pred EEEecceEeehhhheeeeEeccceeEcCceEhh
Confidence 667777777655556666666666666555443
|
|
| >PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0063 Score=57.58 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=4.8
Q ss_pred eEEcCCcEEc
Q 010554 407 AIISHGCFLR 416 (507)
Q Consensus 407 siIg~gc~I~ 416 (507)
+.||++|.|+
T Consensus 86 v~IG~~v~Ig 95 (192)
T PRK09677 86 ITIGRDTLIA 95 (192)
T ss_pred EEECCCCEEC
Confidence 3445555554
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0061 Score=55.00 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=10.8
Q ss_pred eeeEeCCCCEECCCcEEec
Q 010554 454 RNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 454 ~nsIIg~na~Ig~~~~i~~ 472 (507)
.+++||++|.||.++.|..
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~ 90 (145)
T cd03349 72 GDVIIGNDVWIGHGATILP 90 (145)
T ss_pred CCcEECCCCEECCCCEEeC
Confidence 3455566666666655544
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >PRK10092 maltose O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=53.79 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=9.9
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
..||++|.||.+|+|..
T Consensus 130 v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 130 VTIGNNVWIGGRAVINP 146 (183)
T ss_pred eEECCCcEECCCCEECC
Confidence 45566666666666644
|
|
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0097 Score=56.66 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=44.5
Q ss_pred Cceecceee--e-ceEEcCCcEEccceEeeeeEEeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEE
Q 010554 396 PTKIDNCRI--K-DAIISHGCFLRECTVEHSIVDYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVI 470 (507)
Q Consensus 396 p~~i~~~~I--~-~siIg~gc~I~~~~I~~Sii~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i 470 (507)
.++++.+.+ + +.+||+++.+.-..+.+-|+ +|..+.|. .++..+ ++|+..|++. |.++.+++.||+.+.|
T Consensus 9 ~Tr~e~~~ivv~gdViIG~nS~l~~~V~g~~ii--vge~v~i~Gdiva~d---iridmw~kv~gNV~ve~dayiGE~~sI 83 (277)
T COG4801 9 NTRVEEAIIVVKGDVIIGKNSMLKYGVVGEEII--VGERVRIYGDIVAKD---IRIDMWCKVTGNVIVENDAYIGEFSSI 83 (277)
T ss_pred CCceeeeeEEEeccEEEcccceeeeeeeeeeEE--eccCcEEeeeEEecc---eeeeeeeEeeccEEEcCceEEecccee
Confidence 366664443 2 67888888887444444443 45555563 556655 6777777775 5555666666666666
Q ss_pred ecC
Q 010554 471 VNK 473 (507)
Q Consensus 471 ~~~ 473 (507)
+..
T Consensus 84 ~gk 86 (277)
T COG4801 84 KGK 86 (277)
T ss_pred eee
Confidence 543
|
|
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0086 Score=67.62 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=14.4
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.||++|.|. +|+|.++++||+++.|..
T Consensus 646 v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~ 674 (695)
T TIGR02353 646 VTIGDGATLGPGAIVLYGVVMGEGSVLGP 674 (695)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECC
Confidence 4555555554 355555555555555543
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.01 Score=67.03 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=31.6
Q ss_pred eEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCC
Q 010554 407 AIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDV 476 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~ 476 (507)
..||+||.|+ +|.+.+..+ +.+.. . -| ++.||+||.|. +|+|.+|++||+|++|..+..+
T Consensus 132 i~IG~~~~I~~~v~l~~~~~---~~~~l----~-~g--~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V 193 (695)
T TIGR02353 132 LTIGAGTIVRKEVMLLGYRA---ERGRL----H-TG--PVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSAL 193 (695)
T ss_pred eEECCCCEECCCCEEEcccC---CCCce----e-ec--CcEECCCcEECCCCEEcCCCEECCCCEECCCCEe
Confidence 3577777777 466543222 11111 1 12 14566666664 5666666666666666655443
|
This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size. |
| >PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0064 Score=40.77 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=8.5
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
++|++++.|+.++.|..
T Consensus 2 ~~Ig~~~~i~~~~~i~~ 18 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGG 18 (36)
T ss_dssp EEEETTEEEETTEEEET
T ss_pred CEEcCCCEECCCcEecC
Confidence 44555555555555543
|
A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F .... |
| >COG4801 Predicted acyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.049 Score=51.98 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=34.8
Q ss_pred EcCCcEEcc--ceEeeeeEEeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 409 ISHGCFLRE--CTVEHSIVDYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 409 Ig~gc~I~~--~~I~~Sii~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
|=++++++. .+++.++| +|..+.+. .+.++. +.+|+++.|..-|+.++++|+.||.+..
T Consensus 6 vPp~Tr~e~~~ivv~gdVi--IG~nS~l~~~V~g~~---iivge~v~i~Gdiva~diridmw~kv~g 67 (277)
T COG4801 6 VPPNTRVEEAIIVVKGDVI--IGKNSMLKYGVVGEE---IIVGERVRIYGDIVAKDIRIDMWCKVTG 67 (277)
T ss_pred cCCCCceeeeeEEEeccEE--Ecccceeeeeeeeee---EEeccCcEEeeeEEecceeeeeeeEeec
Confidence 344555442 23344444 56666664 566666 6677777777777766666666666654
|
|
| >KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0087 Score=52.69 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=16.5
Q ss_pred eeCCCcEEeeeEeCCCCEECCCcEEecCCCCc
Q 010554 446 GVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQ 477 (507)
Q Consensus 446 ~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~ 477 (507)
.||+.++ +|+||.||+.|+|.+++.+.
T Consensus 103 qIgsyVh-----~GknaviGrrCVlkdCc~il 129 (184)
T KOG3121|consen 103 QIGSYVH-----LGKNAVIGRRCVLKDCCRIL 129 (184)
T ss_pred hheeeeE-----eccceeEcCceEhhhheecc
Confidence 4555433 46667777777777776543
|
|
| >cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.039 Score=49.77 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=18.5
Q ss_pred eeecCCCcceeeCCCcEE-eeeEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~ 472 (507)
.+|+++ |.||.++.| .++.||++|.||+++.+..
T Consensus 74 ~~Ig~~---~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 74 VIIGND---VWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred cEECCC---CEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 455555 555555555 2455555555555555543
|
Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.33 Score=41.73 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=66.5
Q ss_pred ceeecCcchhhHHHHHHHHhcC--CCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINSG--INKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~G--i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
++|..|..+++.++++++.+.+ ..+++|+.+...+...+.+.+.... .. .+..+.... ..|.+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~---------~~g~~ 66 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK---DP---RVIRVINEE---------NQGLA 66 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc---CC---CeEEEEecC---------CCChH
Confidence 4677777799999999999987 7889999888777666666533211 00 122222111 24889
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH-HHHHHHH
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY-MDFIQSH 237 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl-~~ll~~h 237 (507)
.++..+..... .+.++++.+|.++..++ ..++..+
T Consensus 67 ~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 67 AARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHH
Confidence 99988876653 57899999999998775 4442433
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.05 Score=50.91 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=20.5
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDD 475 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~ 475 (507)
+.||+++.|. +++|.++++||+|++|..+..
T Consensus 125 v~IG~~vwIG~~a~IlpGV~IG~gavigagsV 156 (190)
T COG0110 125 VTIGEDVWIGAGAVILPGVTIGEGAVIGAGSV 156 (190)
T ss_pred eEECCCeEEcCccEECCCEEECCCcEEeeCCE
Confidence 6666666665 566777777777777766543
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.041 Score=52.32 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=15.6
Q ss_pred CCceecceeee----ceEEcCCcEEc-cceEeee
Q 010554 395 PPTKIDNCRIK----DAIISHGCFLR-ECTVEHS 423 (507)
Q Consensus 395 ~p~~i~~~~I~----~siIg~gc~I~-~~~I~~S 423 (507)
|.++|++..+. ..+||+-++|+ +++|-|-
T Consensus 153 paa~ig~gilldhatgvvigeTAvvg~~vSilH~ 186 (269)
T KOG4750|consen 153 PAAKIGKGILLDHATGVVIGETAVVGDNVSILHP 186 (269)
T ss_pred chhhcccceeeccccceeecceeEeccceeeecc
Confidence 44566653332 35666666666 3555443
|
|
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.24 Score=46.52 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=57.3
Q ss_pred chhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHH
Q 010554 126 YRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWV 205 (507)
Q Consensus 126 ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~ 205 (507)
.|||.|+++.+..+++++++|+++. +.+.+++. .++ ++++.... .|.+.+++.+...
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~--------~~~---v~~i~~~~----------~G~~~si~~al~~ 86 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAAR--------NLG---APVLRDPG----------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH--------hcC---CEEEecCC----------CCHHHHHHHHHHH
Confidence 3899999999999888888888874 33433332 112 34443211 2899999988766
Q ss_pred HHhhhcCCCCeEEEEcCcee--ccCCHHHHHHHHH
Q 010554 206 FEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHV 238 (507)
Q Consensus 206 l~~~~~~~~~~~lVl~gD~i--~~~dl~~ll~~h~ 238 (507)
+.. ..+.++++.||+- ....+.++++...
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 541 2357999999993 3456777777653
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.071 Score=35.51 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=2.9
Q ss_pred eeeCCCcEE
Q 010554 445 IGVGRNTKI 453 (507)
Q Consensus 445 ~~Ig~~~~I 453 (507)
|.||.++.|
T Consensus 8 ~~ig~~~~i 16 (34)
T PF14602_consen 8 CFIGANSTI 16 (34)
T ss_dssp EEE-TT-EE
T ss_pred EEECccccc
Confidence 344444443
|
... |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.081 Score=47.12 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=9.3
Q ss_pred eEEcCCcEEcc-ceEee
Q 010554 407 AIISHGCFLRE-CTVEH 422 (507)
Q Consensus 407 siIg~gc~I~~-~~I~~ 422 (507)
-+||+||.|++ +.|.|
T Consensus 48 I~iGEnniiEEyA~i~n 64 (190)
T KOG4042|consen 48 IYIGENNIIEEYAVIRN 64 (190)
T ss_pred EEEccCchhhhHHHHHh
Confidence 36677777663 44444
|
|
| >KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.92 Score=48.08 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=46.8
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCc--chhhHHHHHHHHh----------cCCC-EEEEEec-cCchHHHH
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGC--YRLIDIPMSNCIN----------SGIN-KIFVLTQ-FNSASLNR 157 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~--ypLId~~L~~l~~----------~Gi~-~I~Vv~~-~~~~~l~~ 157 (507)
..++.++++|||.||||. ..-||.+.|++.. ..++++..+.+.. .|.+ ..+|.|. .-.+.-.+
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~ 171 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLE 171 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHh
Confidence 467899999999999998 5789999999843 1477777665432 1321 2255554 34555566
Q ss_pred HHHh-cccCC
Q 010554 158 HIAR-TYFGN 166 (507)
Q Consensus 158 ~l~~-~~~~~ 166 (507)
|+.. .||+.
T Consensus 172 ~f~~~~~FGl 181 (477)
T KOG2388|consen 172 YFESHKYFGL 181 (477)
T ss_pred HHhhcCCCCC
Confidence 6653 34543
|
|
| >KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.41 Score=45.69 Aligned_cols=14 Identities=43% Similarity=0.408 Sum_probs=8.1
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
+.||+|++|++|++
T Consensus 219 V~IGegavIaAGsv 232 (269)
T KOG4750|consen 219 VTIGEGAVIAAGSV 232 (269)
T ss_pred eeECCCcEEeccce
Confidence 44566666666654
|
|
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=90.63 E-value=5.2 Score=34.99 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=69.8
Q ss_pred ceeecCcchhhHHHHHHHHhc--CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccChH
Q 010554 119 AVPVAGCYRLIDIPMSNCINS--GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTA 196 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~--Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gta 196 (507)
.+|..|+...|..+|+.+.+. ...+|+|+-....+...+.+. .+.. ....++++...+. .|.+
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~-~~~~-----~~~~i~~i~~~~n---------~g~~ 67 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILE-EYAE-----SDPNIRYIRNPEN---------LGFS 67 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHH-HHHC-----CSTTEEEEEHCCC---------SHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccc-cccc-----ccccccccccccc---------cccc
Confidence 578888767889999988876 445777776555444444443 2211 0122666653332 3788
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEEEE
Q 010554 197 DAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITISC 248 (507)
Q Consensus 197 ~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl~~ 248 (507)
.++..+..... .+.++++..|.+...+ +..+++.+.+.+.++.+..
T Consensus 68 ~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 68 AARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred ccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 88888876654 4799999999999877 6888888888777654443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.1 Score=41.71 Aligned_cols=33 Identities=39% Similarity=0.481 Sum_probs=24.4
Q ss_pred eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 455 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.++||++|-||.+++|.. | ++||+|+.|++|++
T Consensus 124 ~v~IG~~vwIG~~a~Ilp------------------G-V~IG~gavigagsV 156 (190)
T COG0110 124 PVTIGEDVWIGAGAVILP------------------G-VTIGEGAVIGAGSV 156 (190)
T ss_pred CeEECCCeEEcCccEECC------------------C-EEECCCcEEeeCCE
Confidence 477777777777777765 3 67788888877765
|
|
| >PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] | Back alignment and domain information |
|---|
Probab=86.80 E-value=0.83 Score=48.53 Aligned_cols=18 Identities=6% Similarity=-0.032 Sum_probs=9.7
Q ss_pred ceEEcCCcEEccceEeee
Q 010554 406 DAIISHGCFLRECTVEHS 423 (507)
Q Consensus 406 ~siIg~gc~I~~~~I~~S 423 (507)
.+.+.+++.|-+|.++..
T Consensus 273 ~~~~~~~~~VinSil~~~ 290 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGG 290 (414)
T ss_pred ccccCCCeeEEEeEecCC
Confidence 445555555555555443
|
; GO: 0016772 transferase activity, transferring phosphorus-containing groups |
| >KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.71 E-value=0.98 Score=40.40 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=14.1
Q ss_pred CcCCCceec-ceeee-ceEEcCCcEEc
Q 010554 392 RFLPPTKID-NCRIK-DAIISHGCFLR 416 (507)
Q Consensus 392 ~~~~p~~i~-~~~I~-~siIg~gc~I~ 416 (507)
.+.|.+.+. .+.|+ +.+|++||++-
T Consensus 10 kIap~AvVCvEs~irGdvti~~gcVvH 36 (190)
T KOG4042|consen 10 KIAPSAVVCVESDIRGDVTIKEGCVVH 36 (190)
T ss_pred eecCceEEEEecccccceEecCCcEec
Confidence 344444443 34443 67778887764
|
|
| >PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.77 E-value=2 Score=50.15 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=26.0
Q ss_pred eeecCCCcceeeCCCc-EEeeeEeCCCCEECCCcEEecC
Q 010554 436 SLLAEGKVPIGVGRNT-KIRNCIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~-~I~nsIIg~na~Ig~~~~i~~~ 473 (507)
|++..+ +.+|+++ .|+||.|+.+.+||.+++|.+.
T Consensus 337 s~~~~~---~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 337 AVLSGK---LTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred eEecCC---cccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 444666 7788874 4888888888888888888764
|
|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=81.03 E-value=21 Score=33.81 Aligned_cols=106 Identities=10% Similarity=0.108 Sum_probs=65.4
Q ss_pred ceeecCcchhhHHHHHHHHhcCC----CEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCYRLIDIPMSNCINSGI----NKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~Gi----~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
++|..|..+.|..+|+.+.+... -+|+|+-+...+...+.+.+ +... . ..+.++.... .|
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~-~~~~---~--~~v~~i~~~~----------~~ 68 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQE-YAAK---D--PRIRLIDNPK----------RI 68 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHH-HHhc---C--CeEEEEeCCC----------CC
Confidence 56777776778888888877644 37777766655555555532 2111 1 1255553211 25
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEE
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl 246 (507)
-+.|+..+....+ .+.++++.+|.+...+ +..+++.+.+.+.++..
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 5667776655442 5789999999988766 57777766666555433
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=80.33 E-value=24 Score=31.76 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=64.8
Q ss_pred ceeecCcchhhHHHHHHHHhc----CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccC
Q 010554 119 AVPVAGCYRLIDIPMSNCINS----GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQG 194 (507)
Q Consensus 119 LlPI~g~ypLId~~L~~l~~~----Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~G 194 (507)
.+|..+....|..+|+.+.+. ...+|+|+-+...+...+.+. .+.. ++. .+.++...+. .|
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~~~---~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-ELAA---RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HHHH---hCC--CeEEEEccCC---------CC
Confidence 356666645677778888776 356777776555444444342 2211 111 1344433332 48
Q ss_pred hHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEEE
Q 010554 195 TADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITIS 247 (507)
Q Consensus 195 ta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl~ 247 (507)
.+.|+..+..... .+.++++.+|.....+ +..++......+.++.+.
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 8888887765543 4789999999877666 577777655666655433
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 507 | ||||
| 1yp2_A | 451 | Crystal Structure Of Potato Tuber Adp-Glucose Pyrop | 1e-125 | ||
| 3brk_X | 420 | Crystal Structure Of Adp-Glucose Pyrophosphorylase | 7e-46 | ||
| 1lvw_A | 295 | Crystal Structure Of Glucose-1-phosphate Thymidylyl | 2e-06 | ||
| 1fxo_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 4e-06 | ||
| 4arw_A | 302 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 5e-06 | ||
| 4b2x_A | 303 | Pseudomonas Aeruginosa Rmla In Complex With Alloste | 5e-06 | ||
| 1mp4_A | 292 | W224h Variant Of S. Enterica Rmla Length = 292 | 1e-05 | ||
| 1iim_A | 292 | Thymidylyltransferase Complexed With Ttp Length = 2 | 1e-05 | ||
| 1mp5_A | 292 | Y177f Variant Of S. Enterica Rmla Length = 292 | 1e-05 | ||
| 1mp3_A | 292 | L89t Variant Of S. Enterica Rmla Length = 292 | 2e-05 | ||
| 1g23_A | 293 | The Structural Basis Of The Catalytic Mechanism And | 2e-05 | ||
| 3pkp_A | 292 | Q83s Variant Of S. Enterica Rmla With Datp Length = | 3e-05 | ||
| 1h5s_D | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 5e-05 | ||
| 1h5r_B | 293 | Thymidylyltransferase Complexed With Thimidine And | 6e-05 | ||
| 1h5t_A | 293 | Thymidylyltransferase Complexed With Thymidylyldiph | 6e-05 | ||
| 1h5s_A | 293 | Thymidylyltransferase Complexed With Tmp Length = 2 | 6e-05 | ||
| 3pkq_A | 292 | Q83d Variant Of S. Enterica Rmla With Dgtp Length = | 7e-05 |
| >pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 | Back alignment and structure |
|
| >pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 | Back alignment and structure |
|
| >pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 | Back alignment and structure |
|
| >pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 | Back alignment and structure |
|
| >pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 | Back alignment and structure |
|
| >pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 | Back alignment and structure |
|
| >pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 | Back alignment and structure |
|
| >pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 | Back alignment and structure |
|
| >pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 | Back alignment and structure |
|
| >pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 | Back alignment and structure |
|
| >pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 | Back alignment and structure |
|
| >pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 | Back alignment and structure |
|
| >pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 | Back alignment and structure |
|
| >pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 507 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 0.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 0.0 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 2e-16 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 3e-15 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 6e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-08 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 2e-06 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 1e-05 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 2e-04 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 | Back alignment and structure |
|---|
Score = 651 bits (1681), Expect = 0.0
Identities = 226/456 (49%), Positives = 312/456 (68%), Gaps = 31/456 (6%)
Query: 78 MTLAPPRLERRRVDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMS 134
M ++ + + +DP ++V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+S
Sbjct: 1 MAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVS 60
Query: 135 NCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQ 193
NC+NS I+KI+VLTQFNSASLNRH++R Y G +GFVEVLAA Q+P +WFQ
Sbjct: 61 NCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPDWFQ 118
Query: 194 GTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
GTADAVRQ+ W+FE+ + IL GDHLYRMDY FIQ+H + DADIT++ + E
Sbjct: 119 GTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDE 175
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVF 313
RA+ +GL+KID GRI +FAEKP G L+AM+VDT++LG + A++ P++ASMG+YV
Sbjct: 176 KRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVI 235
Query: 314 KKDVLFKLLRWRYPTSNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372
KDV+ LLR ++P +NDFGSE+IP A + VQAY++ YWEDIGTI++FY AN+ +T
Sbjct: 236 SKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 295
Query: 373 K-ESPAFHFYDPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV------ 425
K P F FYD P YT PR+LPP+K+ + + D++I GC ++ C + HS+V
Sbjct: 296 KKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCI 355
Query: 426 --------------DYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471
DYY+T+++ L A+G VPIG+G+N I+ IIDKN +IG +V I+
Sbjct: 356 SEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKII 415
Query: 472 NKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507
NKD+VQEA R G++I+SGI +++ A I G++I
Sbjct: 416 NKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 | Back alignment and structure |
|---|
Score = 524 bits (1352), Expect = 0.0
Identities = 133/449 (29%), Positives = 210/449 (46%), Gaps = 63/449 (14%)
Query: 85 LERRRVDP--KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGIN 142
+ +RV P ++ A +L GG G++L LT R A PAV G R+ID +SN +NSGI
Sbjct: 1 MSEKRVQPLARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIR 60
Query: 143 KIFVLTQFNSASLNRHIARTY-FGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQ 201
+I V TQ+ + SL RH+ R + F + ++L A+Q E+ W++GTADAV Q
Sbjct: 61 RIGVATQYKAHSLIRHLQRGWDFFRP--ERNESFDILPASQRVSET--QWYEGTADAVYQ 116
Query: 202 FTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGL 261
+ E E + IL GDH+Y+MDY +Q HVD AD+TI C V A+ +G+
Sbjct: 117 NIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGV 173
Query: 262 VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321
+ ++ I F EKP+ + +ASMG+YVF L +
Sbjct: 174 MHVNEKDEIIDFIEKPADPP--------------GIPGNEGFALASMGIYVFHTKFLMEA 219
Query: 322 LRWRYP---TSNDFGSEIIPAAIMEHDVQAYIFRD-----------YWEDIGTIKSFYEA 367
+R +S DFG +IIP + A+ F D YW D+GTI ++++A
Sbjct: 220 VRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQA 279
Query: 368 NMALTKESPAFHFYDPKTPFYTSPRFLPPTKI------DNCRIKDAIISHGCFLRECTVE 421
N+ LT P YD P +T PP K +++S C + +
Sbjct: 280 NIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALN 339
Query: 422 HSI------VDYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKD 474
S+ + Y S + +++ + +GR+ ++ N +ID V I + +++ +D
Sbjct: 340 RSLLFTGVRANSY---SRLENAVVLPS---VKIGRHAQLSNVVIDHGVVIPEGLIV-GED 392
Query: 475 DVQEADRPELGFYI-RSGITIIMEKATIE 502
+A R F SGI +I + +
Sbjct: 393 PELDAKR----FRRTESGICLITQSMIDK 417
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-16
Identities = 39/313 (12%), Positives = 85/313 (27%), Gaps = 69/313 (22%)
Query: 70 TSKHPNEVMTLAPPRLERRRVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLI 129
+ H + L P + V AIIL G GT+L PLT V V LI
Sbjct: 4 SHHHHHHSSGLVP---RGSHMKEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLI 59
Query: 130 DIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGK 189
+ + GIN I ++ ++ + +G V
Sbjct: 60 EYQIEFLKEKGINDIIIIVG--------YLKEQFDYLKEKYGVRLVFNDKYADY------ 105
Query: 190 NWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCA 249
++ K + I ++L++ + ++ + R ++
Sbjct: 106 ----NNFYSLYL-------VKEELANSYVIDADNYLFK----NMFRNDLTRSTYFSVY-- 148
Query: 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMG 309
++ + + ++ G
Sbjct: 149 ---REDCTNEWFLVYGDDYKVQDIIVDSKAGR------------------------ILSG 181
Query: 310 VYVFKKDVLFKLLR------WRYPTSNDFGSEIIPAAIMEHDVQAYIF-RDYWEDIGTIK 362
V + K++ + + ++ I E DV + +I +++
Sbjct: 182 VSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQ 241
Query: 363 SFYEANMALTKES 375
+ + L E+
Sbjct: 242 DYRKLEEILKNEN 254
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 81/450 (18%), Positives = 131/450 (29%), Gaps = 132/450 (29%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYR-LIDIPMSNCINSGINKIFVLTQFNSASL 155
A IL G+G +L P+T VP+ + LI+ + GI I V+
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPILS--KPLIEYQIEYLRKCGIRDITVIVS------ 54
Query: 156 NRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIE 215
+ YF V +GT A+ AK +
Sbjct: 55 --SKNKEYFEKK---LKEISIVTQKDD---------IKGTGAAILS-------AKFN--D 91
Query: 216 NVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASD---YGLVKIDNMGRIAQ 272
I+ GD + + IT+ A+ + S+ YG++ +DN +++
Sbjct: 92 EALIIYGDLF--------FSNEKEICNIITLKENAIIGVKVSNPKDYGVLVLDNQNNLSK 143
Query: 273 FAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLR-----WR-- 325
EKP P + + G+Y D +F L R
Sbjct: 144 IIEKPEI---------------PPSN------LINAGIYKLNSD-IFTYLDKISISERGE 181
Query: 326 -YPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPK 384
T + I +H V+ + YW DIG + + N F
Sbjct: 182 LELT------DAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNL---VFSQNL 232
Query: 385 TPFYTSPRFLPPTKI-------DNCRIKD-AIISHGC------FLRECTVEHSIVDYYQT 430
+ + I I+ I G +LR T+
Sbjct: 233 GNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTI---------- 282
Query: 431 ESEIASLLAEGKVPIG---------VGRNTK------IRNCIIDKNVKIGKDVVIVN-KD 474
L E IG + +K + + +I ++V G +I N +
Sbjct: 283 -------LVEK-NKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRF 334
Query: 475 DVQEADRPELGFYIRSGITIIMEKATIEDG 504
D +E G I SG A I
Sbjct: 335 DEKEVKVNVKGKRISSG--RRKLGAFIGGH 362
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 6e-15
Identities = 40/276 (14%), Positives = 82/276 (29%), Gaps = 71/276 (25%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGC---YRLIDIPMSNCINSGINKIFVLTQFNSA 153
A+IL G GT+L + P V V GC R + + ++ +++ ++ +
Sbjct: 21 AVILAAGLGTRLGGVP----KPLVRVGGCEIILRTMKL-----LSPHVSEFIIVASRYA- 70
Query: 154 SLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRN 213
+ D E G ++ AKN
Sbjct: 71 ----DDIDAFLK------DKGFNYKIVRHDRPEKG------NGYSLLV-------AKNHV 107
Query: 214 IENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQF 273
+ + GDH+Y FI+ V + I + + +++++ GR+A+
Sbjct: 108 EDRFILTMGDHVYSQQ---FIEKAVRGEGVIADREPRFVDI--GEATKIRVED-GRVAKI 161
Query: 274 AEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333
+ + G +V + F+ D
Sbjct: 162 GKDLREFDC-----------------------VDTGFFVLDDSI-FEHA----EKLRDRE 193
Query: 334 SEIIPAAIMEHDVQA-YIFRDYWEDIGTIKSFYEAN 368
+ + + Y+ + W D+ T + AN
Sbjct: 194 EIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRAN 229
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 9e-08
Identities = 65/437 (14%), Positives = 118/437 (27%), Gaps = 170/437 (38%)
Query: 121 PVAGCYRLIDIPMSNCINSGINKIFV---------------LTQFNSASLNRHIARTY-- 163
V+G RL +S + + FV T+ S+ +
Sbjct: 60 AVSGTLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 164 --FGNGTNFGDGFV----EVLAATQ-----TPGE---------SGKNWFQGTADAVRQFT 203
+ + F V L Q P + SGK W D +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYK 175
Query: 204 ----------WVFEDAKNRN-----IENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248
W+ + KN N +E + L Y++D S D ++I +
Sbjct: 176 VQCKMDFKIFWL--NLKNCNSPETVLEMLQKLL----YQIDPNW--TSRSDHSSNIKLRI 227
Query: 249 AAVGES-----RASDY--GLVKIDNM------------------GRIAQFAEKPSGANLK 283
++ ++ Y L+ + N+ R Q + S A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 284 AMQVDTSLLGFSPQEAR----KC----------------PYVASMGVYVFKKDVLFKLLR 323
+ +D + +P E + K P S+ + +D L
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDN 346
Query: 324 WRYPTSNDFGSEIIPAAI---MEHDVQAY-----IFRD-----------YWEDIGTIKSF 364
W++ + + II +++ + + +F W D+
Sbjct: 347 WKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV----IK 401
Query: 365 YEANMALTKESPAFHFY-----DPKTPFYTSPRFLPPTKIDNCRIKDAIISHGCFLRE-C 418
+ + + K H Y PK I +L
Sbjct: 402 SDVMVVVNK----LHKYSLVEKQPKESTI--------------SI------PSIYLELKV 437
Query: 419 TVE-----H-SIVDYYQ 429
+E H SIVD+Y
Sbjct: 438 KLENEYALHRSIVDHYN 454
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 30/176 (17%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+I+ GG GT++ + P + + G LID +S + S +N IF+ T N+
Sbjct: 3 ALIMAGGKGTRMGGVE----KPLIKLCG-RCLIDYVVSPLLKSKVNNIFIATSPNTPKT- 56
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ Y + + + T G +G + + + E
Sbjct: 57 ----KEYINSAYKDY----KNIVVIDTSG-------KGYIEDLNE-------CIGYFSEP 94
Query: 217 VAILCGD--HLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
++ D +L + A A Y ID G +
Sbjct: 95 FLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEKYPNPSIDFNGLV 150
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 1e-05
Identities = 44/301 (14%), Positives = 80/301 (26%), Gaps = 57/301 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPA--VPVAGCYR-LIDIPMSNCINSGINKIFVLT-QFNS 152
+L G G+ R + + ++D + + I +G ++ +
Sbjct: 8 LFVLAAGMGS-------RYGSLKQLDGIGPGGDTIMDYSVYDAIRAGFGRLVFVIRHSFE 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVE-----VLAATQTPGESGKNWFQGTADAVRQFTWVFE 207
I Y G V + P K W GT AV
Sbjct: 61 KEFREKILTKYEGRIP---VELVFQELDRLPEGFSCPEGREKPW--GTNHAVLM------ 109
Query: 208 DAKNRNIENVAILCGDHLY----RMDYMDFIQSHVDRDADITISCAAVG----ESRASDY 259
++ E A++ D Y + + + + + VG ES
Sbjct: 110 -GRDAIREPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSR 168
Query: 260 GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319
G+ ++D + E+ G A P SM ++ F D F
Sbjct: 169 GVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAP--VSMNMWGFTPDY-F 225
Query: 320 KLLRWRYP-----TSNDFGSEI-IPAAIMEH------DVQAYIFRDYW------EDIGTI 361
+ + SE IP + + V+ W +D +
Sbjct: 226 DYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGV 285
Query: 362 K 362
Sbjct: 286 V 286
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 447 VGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELG--FYIRSGITIIMEKATIED 503
+ N I + I +G+ +V D + + +G IR+ +I I D
Sbjct: 35 IRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTE-NVIYGDTIIGD 93
Query: 504 GMVI 507
Sbjct: 94 NFQT 97
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 507 | |||
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 100.0 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 100.0 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 100.0 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 100.0 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 100.0 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 100.0 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 100.0 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 100.0 | |
| 2e3d_A | 302 | UTP--glucose-1-phosphate uridylyltransferase; UDP- | 100.0 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 100.0 | |
| 1tzf_A | 259 | Glucose-1-phosphate cytidylyltransferase; nucleoti | 100.0 | |
| 2pa4_A | 323 | UTP-glucose-1-phosphate uridylyltransferase; phosp | 100.0 | |
| 4evw_A | 255 | Nucleoside-diphosphate-sugar pyrophosphorylase; st | 100.0 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 100.0 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 99.98 | |
| 1lvw_A | 295 | Glucose-1-phosphate thymidylyltransferase; protein | 99.98 | |
| 1mc3_A | 296 | Glucose-1-phosphate thymidylyltransferase; glucose | 99.97 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 99.97 | |
| 1jyk_A | 254 | LICC protein, CTP:phosphocholine cytidylytransfera | 99.95 | |
| 2x65_A | 336 | Mannose-1-phosphate guanylyltransferase; nucleotid | 99.95 | |
| 2cu2_A | 337 | Putative mannose-1-phosphate guanylyl transferase; | 99.94 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.94 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 99.91 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 99.91 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 99.9 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 99.89 | |
| 2xme_A | 232 | CTP-inositol-1-phosphate cytidylyltransferase; CDP | 99.88 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.87 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 99.86 | |
| 2icy_A | 469 | Probable UTP-glucose-1-phosphate uridylyltransfera | 99.85 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 99.84 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 99.83 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 99.81 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.81 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 99.81 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 99.8 | |
| 2dpw_A | 232 | Hypothetical protein TTHA0179; transferase, struct | 99.79 | |
| 2i5k_A | 488 | UTP--glucose-1-phosphate uridylyltransferase; LEFT | 99.78 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 99.73 | |
| 1i52_A | 236 | 4-diphosphocytidyl-2-C-methylerythritol synthase; | 99.72 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 99.72 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 99.71 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 99.71 | |
| 1vpa_A | 234 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 99.66 | |
| 2px7_A | 236 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 99.65 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 99.65 | |
| 1jv1_A | 505 | Glcnac1P uridyltransferase isoform 1: AGX1; nucleo | 99.63 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 99.61 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 99.57 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.54 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 99.51 | |
| 2oeg_A | 505 | UTP-glucose-1-phosphate uridylyltransferase 2, put | 99.51 | |
| 2yqc_A | 486 | UDP-N-acetylglucosamine pyrophosphorylase; uridine | 99.43 | |
| 3oc9_A | 405 | UDP-N-acetylglucosamine pyrophosphorylase; structu | 99.42 | |
| 1w55_A | 371 | ISPD/ISPF bifunctional enzyme; biosynthetic pathwa | 99.35 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 99.34 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 99.28 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 99.17 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 99.0 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.94 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.92 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.91 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.91 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.89 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.83 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.82 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.8 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.8 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.8 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.78 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.77 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.77 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 98.76 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.74 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.74 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.74 | |
| 4eqy_A | 283 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.72 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.71 | |
| 1hm9_A | 468 | GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr | 98.71 | |
| 3fs8_A | 273 | QDTC; acetyltransferase, natural product, deoxysug | 98.7 | |
| 4e6u_A | 265 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.7 | |
| 3r3i_A | 528 | UTP--glucose-1-phosphate uridylyltransferase; ross | 98.7 | |
| 3brk_X | 420 | Glucose-1-phosphate adenylyltransferase; ADP-gluco | 98.69 | |
| 3r0s_A | 266 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.69 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.68 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.68 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.67 | |
| 3r8y_A | 240 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac | 98.67 | |
| 1xhd_A | 173 | Putative acetyltransferase/acyltransferase; struct | 98.66 | |
| 1j2z_A | 270 | Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam | 98.65 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.65 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.64 | |
| 3ixc_A | 191 | Hexapeptide transferase family protein; niaid, ssg | 98.63 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.63 | |
| 3c8v_A | 496 | Putative acetyltransferase; YP_390128.1, structura | 98.61 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.59 | |
| 3r1w_A | 189 | Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid | 98.58 | |
| 2qia_A | 262 | UDP-N-acetylglucosamine acyltransferase; LEFT-hand | 98.58 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.58 | |
| 3hsq_A | 259 | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam | 98.56 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.56 | |
| 3pmo_A | 372 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; | 98.53 | |
| 3r3r_A | 187 | Ferripyochelin binding protein; structural genomic | 98.53 | |
| 2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a | 98.52 | |
| 4e79_A | 357 | UDP-3-O-acylglucosamine N-acyltransferase; lipopol | 98.51 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 98.51 | |
| 3gue_A | 484 | UTP-glucose-1-phosphate uridylyltransferase 2; pho | 98.5 | |
| 1qre_A | 247 | Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth | 98.49 | |
| 3mqg_A | 192 | Lipopolysaccharides biosynthesis acetyltransferas; | 98.48 | |
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural | 98.47 | |
| 3tv0_A | 194 | Dynactin subunit 6; LEFT-handed beta-helix, ARP11, | 98.47 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.47 | |
| 3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr | 98.46 | |
| 1v3w_A | 173 | Ferripyochelin binding protein; beta-helix, carbon | 98.45 | |
| 3tk8_A | 316 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.45 | |
| 3kwd_A | 213 | Carbon dioxide concentrating mechanism protein; LE | 98.41 | |
| 3t57_A | 305 | UDP-N-acetylglucosamine O-acyltransferase domain- | 98.41 | |
| 3eg4_A | 304 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.4 | |
| 3gos_A | 276 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su | 98.4 | |
| 2ggo_A | 401 | 401AA long hypothetical glucose-1-phosphate thymid | 98.4 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.38 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.35 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 98.34 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 98.34 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 98.29 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 98.29 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 98.27 | |
| 3bfp_A | 194 | Acetyltransferase; LEFT-handed beta helix, COA bin | 98.25 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 98.22 | |
| 3vbi_A | 205 | ANTD, galactoside O-acetyltransferase; anthrose, a | 98.22 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 98.17 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 98.16 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 98.15 | |
| 3r5d_A | 347 | Tetrahydrodipicolinate N-succinyletransferase; 1.8 | 98.14 | |
| 1yp2_A | 451 | Glucose-1-phosphate adenylyltransferase small subu | 98.12 | |
| 3jqy_B | 252 | NEUO, polysialic acid O-acetyltransferase; LEFT-ha | 98.09 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 98.08 | |
| 3fsy_A | 332 | Tetrahydrodipicolinate N-succinyltransferase; beta | 98.08 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 98.07 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 98.04 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 98.03 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 98.01 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 98.01 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 98.0 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 97.96 | |
| 3nz2_A | 195 | Hexapeptide-repeat containing-acetyltransferase; s | 97.83 | |
| 1krr_A | 203 | Galactoside O-acetyltransferase; LEFT-handed paral | 97.81 | |
| 2wlg_A | 215 | Polysialic acid O-acetyltransferase; enzyme, LEFT- | 97.78 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 97.76 | |
| 3mc4_A | 287 | WW/RSP5/WWP domain:bacterial transferase hexapept | 97.74 | |
| 3hjj_A | 190 | Maltose O-acetyltransferase; LEFT-handed beta-heli | 97.71 | |
| 3q1x_A | 313 | Serine acetyltransferase; cysteine biosynthesis, L | 97.7 | |
| 3ftt_A | 199 | Putative acetyltransferase sacol2570; galactoside | 97.66 | |
| 1ssq_A | 267 | SAT, serine acetyltransferase; LEFT-handed paralle | 97.63 | |
| 2p2o_A | 185 | Maltose transacetylase; GK1921, GKA001001921.1, ge | 97.61 | |
| 3srt_A | 188 | Maltose O-acetyltransferase; structural genomics, | 97.59 | |
| 1t3d_A | 289 | SAT, serine acetyltransferase; LEFT-handed-beta-he | 97.59 | |
| 2rij_A | 387 | Putative 2,3,4,5-tetrahydropyridine-2-carboxylate | 97.52 | |
| 3f1x_A | 310 | Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 | 97.52 | |
| 1ocx_A | 182 | Maltose O-acetyltransferase; LEFT-handed parallel | 97.49 | |
| 3ogz_A | 630 | UDP-sugar pyrophosphorylase; LEFT handed beta heli | 97.48 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 97.47 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 97.32 | |
| 4hur_A | 220 | Virginiamycin A acetyltransferase; structural geno | 97.3 | |
| 3eev_A | 212 | Chloramphenicol acetyltransferase; beta-helix, str | 97.26 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 97.06 | |
| 1xat_A | 212 | Xenobiotic acetyltransferase; chloramphenicol, LEF | 96.65 | |
| 2i5e_A | 211 | Hypothetical protein MM_2497; APC86122, methanosar | 96.43 | |
| 1mr7_A | 209 | Streptogramin A acetyltransferase; LEFT-handed par | 95.81 | |
| 4e8l_A | 219 | Virginiamycin A acetyltransferase; structural geno | 95.58 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 83.41 |
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-56 Score=474.01 Aligned_cols=411 Identities=53% Similarity=0.990 Sum_probs=335.9
Q ss_pred CCCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCc-c
Q 010554 91 DPKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGT-N 169 (507)
Q Consensus 91 ~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~-~ 169 (507)
+|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| +.+. .
T Consensus 17 ~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~-~~~~~~ 95 (451)
T 1yp2_A 17 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNMGG 95 (451)
T ss_dssp HHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC-C-----
T ss_pred cccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh-hccccc
Confidence 4678999999999999999999999999999999889999999999999999999999999999999997543 2110 0
Q ss_pred c-CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEE
Q 010554 170 F-GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 170 ~-~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
+ ..+.++++...|.+ ..++|.+||+++|+.+++++++ ...++|+|++||++++.+|.++++.|+++++++|+++
T Consensus 96 ~~~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~ 170 (451)
T 1yp2_A 96 YKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAA 170 (451)
T ss_dssp ---CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEE
T ss_pred ccccCcEEEecccccc--cccccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEE
Confidence 1 12335666543332 1235678999999999888852 1247899999999999999999999999999999998
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.+.+.+.+.+||++.+|++++|+.|.|||..+..+.++++.++|+..+......++++++|+|+|++++|.++++...+.
T Consensus 171 ~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 250 (451)
T 1yp2_A 171 LPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPG 250 (451)
T ss_dssp EEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTT
T ss_pred EEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhccc
Confidence 88753335689999999889999999999865555566677766554332222357999999999999987787765555
Q ss_pred CCchhhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccC-CCccccCCCCCcccCCCcCCCceecceeeec
Q 010554 329 SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPRFLPPTKIDNCRIKD 406 (507)
Q Consensus 329 ~~d~~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~-~~~~~~~~~~~i~~~~~~~~p~~i~~~~I~~ 406 (507)
..+|..++++.++++ .++++|.+++||.||||+++|++|+++++++. +...++++...+++.+.+.|++++.++.|.+
T Consensus 251 ~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~I~~ 330 (451)
T 1yp2_A 251 ANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 330 (451)
T ss_dssp CCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEEEEEEEEE
T ss_pred ccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEEcceEEeC
Confidence 567777899998887 79999999999999999999999999999877 6677889999999999999999998899999
Q ss_pred eEEcCCcEEccceEeeeeE---EeeccCceEe-eeecCCC----------------cceeeCCCcEEeeeEeCCCCEECC
Q 010554 407 AIISHGCFLRECTVEHSIV---DYYQTESEIA-SLLAEGK----------------VPIGVGRNTKIRNCIIDKNVKIGK 466 (507)
Q Consensus 407 siIg~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~g~----------------~~~~Ig~~~~I~nsIIg~na~Ig~ 466 (507)
++||+||+|++|.|.+++| +.+|.++.|. ++++.+. +.+.||+|+.|.+|+||++|.||+
T Consensus 331 ~~Ig~~~~I~~~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~ 410 (451)
T 1yp2_A 331 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGD 410 (451)
T ss_dssp EEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECT
T ss_pred eEECCCCEEcceEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECC
Confidence 9999999998888889999 4789999995 6665441 115899999999999999999999
Q ss_pred CcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 467 DVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 467 ~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
|++|.+++++....++++++.|.+|.++||+++.|++|++|
T Consensus 411 ~~~i~~~~~~~~~~~ig~~~~ig~~~v~Ig~~a~i~agsvv 451 (451)
T 1yp2_A 411 NVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 451 (451)
T ss_dssp TCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred CCEEeCCcccccCceeCCCEEEcCCEEEECCCcEECCCccC
Confidence 99999988887767888999999998899999999999986
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=434.12 Aligned_cols=380 Identities=33% Similarity=0.562 Sum_probs=302.6
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|++|+|||||||.|+||+|||..+||+|+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.| +....+.
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~-~~~~~~~ 88 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGW-DFFRPER 88 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHS-CCCCGGG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhh-ccccccc
Confidence 567999999999999999999999999999999978999999999999999999999999999999987543 2111111
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
...++++...+.. ....|++||+++|+.++.++.+ ...++|+|++||++++.++.++++.|+++++++|+++.+.
T Consensus 89 ~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~ 163 (420)
T 3brk_X 89 NESFDILPASQRV--SETQWYEGTADAVYQNIDIIEP---YAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEV 163 (420)
T ss_dssp TCEEEEECCC---------CCCCHHHHHHTTHHHHHH---HCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEE
T ss_pred cCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHh---cCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeec
Confidence 1235665433310 0124668999999999888853 1237899999999999999999999999999999999887
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---C
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---T 328 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~ 328 (507)
+.+.+..||++.+|++|+|+.|.|||..+... . . ...++++++|+|+|++++|.++++...+ .
T Consensus 164 ~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--~------~------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 229 (420)
T 3brk_X 164 PRMEATGFGVMHVNEKDEIIDFIEKPADPPGI--P------G------NEGFALASMGIYVFHTKFLMEAVRRDAADPTS 229 (420)
T ss_dssp ETTGGGGSEEEEECTTSBEEEEEESCSSCCCB--T------T------BTTEEEEEEEEEEEEHHHHHHHHTSSCCC---
T ss_pred CccccCcccEEEECCCCcEEEeEeCCCccccc--c------c------cccceEEeeeeEEEeHHHHHHHHHHhcccCCc
Confidence 54456789999999889999999998643210 0 0 0124789999999999998777765433 1
Q ss_pred CCchhhhhHHhhhhcCcEEEEEe-----------ccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCc
Q 010554 329 SNDFGSEIIPAAIMEHDVQAYIF-----------RDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPT 397 (507)
Q Consensus 329 ~~d~~~dil~~li~~~~V~~~~~-----------~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~ 397 (507)
..+|..++++.+++++++++|.+ ++||.||||+++|++||++++++++...++.+.+++++.+.+.||+
T Consensus 230 ~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~~~~~i~~~~ 309 (420)
T 3brk_X 230 SRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPA 309 (420)
T ss_dssp -------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCCCCCCCCCCC
T ss_pred cccchHHHHHHHhhhCcEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCceeeccccCCCc
Confidence 34566789999998889999999 8999999999999999999999888777888889999999999999
Q ss_pred eec------ceeeeceEEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCC
Q 010554 398 KID------NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 467 (507)
Q Consensus 398 ~i~------~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~ 467 (507)
+++ ++.+.++.||+||+|.++.|.+|+| +.+|.++.| .|+|+++ +.||+||+|.+|+||+++.||++
T Consensus 310 ~i~~~~~~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~---~~i~~~~~i~~~~ig~~~~i~~~ 386 (420)
T 3brk_X 310 KFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS---VKIGRHAQLSNVVIDHGVVIPEG 386 (420)
T ss_dssp EEECBCSSCBCEEESCEECSSCEEESCEEESCEECTTCEECTTCEEEEEEECTT---CEECTTCEEEEEEECTTCEECTT
T ss_pred EEecccccCCcEecCCEECCCCEEcCCEEeCcEEcCCCEECCCCEEcceEEcCC---CEECCCCEEeceEECCCCEECCC
Confidence 986 4788899999999997789999999 478999998 4999999 89999999999999999999999
Q ss_pred cEEecCCCCccCCCCCCCeEE-cCCeEEEcCCC
Q 010554 468 VVIVNKDDVQEADRPELGFYI-RSGITIIMEKA 499 (507)
Q Consensus 468 ~~i~~~~~~~e~~~~~~~~~i-~~g~~vig~~~ 499 (507)
++|... . ..+.+++++ .+|+++|++++
T Consensus 387 ~~i~~~-~----~~~~~~~~~~~~~~~~~~~~~ 414 (420)
T 3brk_X 387 LIVGED-P----ELDAKRFRRTESGICLITQSM 414 (420)
T ss_dssp CEESSC-H----HHHHHHSEECTTSCEEECHHH
T ss_pred CEEeCC-C----CCCCceEEEecCceEEEecch
Confidence 999742 2 222234788 67877776653
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=377.24 Aligned_cols=372 Identities=17% Similarity=0.192 Sum_probs=258.4
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
+.++.+||||||+||||+|+| ||||+||+|+ |||+|+|++|.++|+++|+|+++|+.+++.+|+.+.. ..++
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~----~~~~ 81 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELA----DTLG 81 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHH----HHHT
T ss_pred CCCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHH----HhcC
Confidence 457899999999999999986 9999999999 9999999999999999999999999999999996421 1122
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
..++++. |. +++|||+||+++++++.+ ...+++++++||..+ ...+.+++++|+..++++|+++.
T Consensus 82 -~~i~~~~--q~-------~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~ 148 (501)
T 3st8_A 82 -RTIDVAL--QD-------RPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTT 148 (501)
T ss_dssp -SCCEEEE--CS-------SCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred -CcEEEEE--cC-------CCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHHHHHHHHHHhhccccceEeee
Confidence 1244442 32 347999999999988853 234689999999843 35589999999999999999999
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC--
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP-- 327 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~-- 327 (507)
++++ |..||++..|++|+|+.|.|||..+... ...+++++|+|+|++++|..+++....
T Consensus 149 ~~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~~-----------------~~i~~in~Giy~f~~~~l~~~l~~l~~~n 209 (501)
T 3st8_A 149 TLDD--PFGYGRILRTQDHEVMAIVEQTDATPSQ-----------------REIREVNAGVYAFDIAALRSALSRLSSNN 209 (501)
T ss_dssp ECSC--CTTSCEEEECTTCCEEEEECGGGCCHHH-----------------HHCCEEEEEEEEEEHHHHHHHHTTCCCCS
T ss_pred ccCC--chhccccccccceeEEeeccccCCChhh-----------------ccceeeeceeeeecchhHHHhhhhhcccc
Confidence 9887 7789999999999999999998643211 123689999999999999988875433
Q ss_pred -CCCchhhhhHHhhhhc-CcEEEEEeccEEEe--cCCHHHHHHHHHHhhccC------CCcccc-------CCCCCcccC
Q 010554 328 -TSNDFGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTKES------PAFHFY-------DPKTPFYTS 390 (507)
Q Consensus 328 -~~~d~~~dil~~li~~-~~V~~~~~~gyw~d--Igt~~~y~~An~~ll~~~------~~~~~~-------~~~~~i~~~ 390 (507)
....+..+++..+... ..+.++...++|.. +++...+.++...+..+. ....+. +++..+...
T Consensus 210 ~~~e~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~d 289 (501)
T 3st8_A 210 AQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRD 289 (501)
T ss_dssp TTCSCCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTT
T ss_pred cccccchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCc
Confidence 2455677877776655 66777777766654 455555555444332211 111111 222222222
Q ss_pred CCcCCCceec-------------ceeeeceEE----------------cCCcEEc-cceEe-eeeE---EeeccCceEe-
Q 010554 391 PRFLPPTKID-------------NCRIKDAII----------------SHGCFLR-ECTVE-HSIV---DYYQTESEIA- 435 (507)
Q Consensus 391 ~~~~~p~~i~-------------~~~I~~siI----------------g~gc~I~-~~~I~-~Sii---~~vg~~~~i~- 435 (507)
+.+.+.+.+. .+.+.++.+ +++|.++ .+.+. +++| +.+|..+++.
T Consensus 290 v~I~~~v~i~g~~~Ig~~~~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~ 369 (501)
T 3st8_A 290 TVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKN 369 (501)
T ss_dssp CEECSSEEEETTCEECTTCEECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEES
T ss_pred ceecceeeecCccccccceEEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEcc
Confidence 2222222211 122222222 2233332 12222 1222 3567777884
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCC-------ccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDV-------QEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~-------~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+++++| +.|++.++|.+|+||+||.||+|+++.|.+++ ++....+.+..+-.+ +.||+++.|++|++|
T Consensus 370 s~Ig~g---skI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~~-v~Ig~~~~i~ags~v 444 (501)
T 3st8_A 370 STIGTG---TKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAP-VTIGDGAYTGAGTVV 444 (501)
T ss_dssp CEECTT---CEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred ceecCC---cEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCCcEECCCCEEcCC-cEECCCCEECCCCEE
Confidence 889999 88999999999999999999999999986654 334444444444455 678999999999875
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=345.08 Aligned_cols=311 Identities=19% Similarity=0.304 Sum_probs=236.7
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||+|||..+||+|+|++|+ |||+|++++|.++|+++|+|+++++ +.+|+.+.+. .
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~---------~ 67 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK---------E 67 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT---------T
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC---------c
Confidence 6899999999999999999999999999999 9999999999999999999999886 6667653210 1
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--CCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
++++.... |++|++++|+.+.. .++|+++.||+++. .++.++++ .+++++++.+..
T Consensus 68 i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~ 125 (401)
T 2ggo_A 68 ISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVS 125 (401)
T ss_dssp CEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECS
T ss_pred EEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcC
Confidence 34443211 23699999876631 37899999999886 55666665 457888888876
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---CC
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TS 329 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~~ 329 (507)
+ +..|+++..+++|++..+.|||..+ .+++.++|+|+|++++|.. ++...+ ..
T Consensus 126 ~--~~~~~~v~~~~~g~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~ 181 (401)
T 2ggo_A 126 N--PKDYGVLVLDNQNNLSKIIEKPEIP---------------------PSNLINAGIYKLNSDIFTY-LDKISISERGE 181 (401)
T ss_dssp C--CSSSCEEEECTTSSEEEEECSCSSC---------------------SCSEEEEEEEEEETHHHHH-HHHSCCCSSSC
T ss_pred C--CcceeEEEECCCCeEEEEEECCCCC---------------------CCcEEEEEEEEEcHHHHHH-hhhcCcCCCCc
Confidence 5 4578989888889999999998543 2368999999999999864 454322 12
Q ss_pred CchhhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCcCCCceec-------c
Q 010554 330 NDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRFLPPTKID-------N 401 (507)
Q Consensus 330 ~d~~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~p~~i~-------~ 401 (507)
.+ ..++++.+ .. .+++++..+++|.||+||+||..|++.+++++... .....+++.+.+.+++.++ +
T Consensus 182 ~~-~~~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~~~~---~~~~~i~~~~~i~~~~~ig~~~~I~~~ 256 (401)
T 2ggo_A 182 LE-LTDAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFS---QNLGNVEDNVKIKGKVIIEEDAEIKSG 256 (401)
T ss_dssp BC-HHHHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHTCCC---EECSEECSSCEEESCEEECTTCEECTT
T ss_pred eE-HHHHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhcccc---cccceeCCCCEEcCCeEEcCCCEECCC
Confidence 23 45778777 44 68999999999999999999999999998765311 1123344444444444443 2
Q ss_pred eeee-ceEEcCCcEEc-cceEe-eeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 402 CRIK-DAIISHGCFLR-ECTVE-HSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I~-~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+.|. ++.||++|.|+ +|.|. +++| +.+|.++.|. ++++++ +.||+++.|.+|+||+++.||.++.|.+
T Consensus 257 ~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~---~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~ 331 (401)
T 2ggo_A 257 TYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEG---SKIPHLSYVGDSVIAEDVNFGAGTLIAN 331 (401)
T ss_dssp CEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECTT---CEEEESCEEESCEECTTCEECTTCEECC
T ss_pred CEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCC---cEECCCceEcceEECCCcEECCCcEEcC
Confidence 4443 46778888886 56665 4555 3678888884 899999 8999999999999999999999999984
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=350.85 Aligned_cols=360 Identities=18% Similarity=0.247 Sum_probs=243.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
-+|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++. .+
T Consensus 12 ~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~-----~~------- 75 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLA-----GQ------- 75 (468)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSS-----SS-------
T ss_pred CcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhC-----CC-------
Confidence 4799999999999985 789999999999 9999999999999999999999998777755442 11
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
++++... +.+||+++|+.++.++++ ..++|++++||+ +...++.++++.|++.++++++++.+..
T Consensus 76 i~~v~~~---------~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~ 142 (468)
T 1hm9_A 76 TEFVTQS---------EQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD 142 (468)
T ss_dssp SEEEECS---------SCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS
T ss_pred cEEEeCC---------ccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC
Confidence 3333211 236999999999888741 247899999999 5678899999999999999999888876
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---C
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT---S 329 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~---~ 329 (507)
+ +..||++..|++|+|..|.|||..... ....+++++|+|+|+++.|.++++...+. .
T Consensus 143 ~--~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~ 203 (468)
T 1hm9_A 143 N--PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQG 203 (468)
T ss_dssp C--CTTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTC
T ss_pred C--CCceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCCC
Confidence 5 557999999988999999998752110 00237899999999999776776653332 2
Q ss_pred CchhhhhHHhhhhc-CcEEEEEeccEEEe--cCCHHHHHHHHHHhhccC------CCccccC-------CCCC-------
Q 010554 330 NDFGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTKES------PAFHFYD-------PKTP------- 386 (507)
Q Consensus 330 ~d~~~dil~~li~~-~~V~~~~~~gyw~d--Igt~~~y~~An~~ll~~~------~~~~~~~-------~~~~------- 386 (507)
..+.+++++.+++. .++++|.+++||.+ |+|+++|..|+..+..+. +...+++ +...
T Consensus 204 ~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i 283 (468)
T 1hm9_A 204 EYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQI 283 (468)
T ss_dssp SCCTTHHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEE
T ss_pred eEEHHHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEE
Confidence 34568899988876 58999999999977 559999999997664321 1111112 1111
Q ss_pred -----cccCCCcCCCceec-ceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEEe-
Q 010554 387 -----FYTSPRFLPPTKID-NCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIR- 454 (507)
Q Consensus 387 -----i~~~~~~~~p~~i~-~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~- 454 (507)
+...+.+.+.+.|+ ++.|.++.||++|.|+++.|.+++| ..+|.++.|. ++++++ +.||+++.|.
T Consensus 284 ~~~~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~---~~Ig~~~~i~~ 360 (468)
T 1hm9_A 284 EANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQ---VHIGNFVEVKG 360 (468)
T ss_dssp CSSCEEESSCEECTTCEECTTCEEESCEECTTCEECSCEEESCEECTTCEECSSCEECSSCEECTT---CEEEEEEEEES
T ss_pred CCCcEECCCCEECCCCEECCCCEEeccEEeCCcEEEEEEEeccccCCCcEECCceEEecCcEECCc---cEECCCcEEee
Confidence 12222222333333 3555566666666666555666655 2445555542 444444 4444433333
Q ss_pred ----------------eeEeCCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 455 ----------------NCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 455 ----------------nsIIg~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+++||+|+.||.++++.+.+ .+++...+..+..|.+| +.||++++|++|++
T Consensus 361 ~~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~-v~Ig~~~~i~~~s~ 434 (468)
T 1hm9_A 361 SSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAP-VELGDNSLVGAGST 434 (468)
T ss_dssp CEECTTCEEEEEEEEESEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS-CEECTTCEECTTCE
T ss_pred eEEcCCcEeCCceEEccccccCCcEECCCcEEecCcCccCCCcEECCCeEECCCCEEeCC-cEECCCCEECCCCE
Confidence 34556666666666665522 23333333333333344 45666666666665
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=336.39 Aligned_cols=360 Identities=16% Similarity=0.225 Sum_probs=238.8
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
.+|.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+++.+ .+
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~--------~~- 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLAD--------PS- 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc--------CC-
Confidence 368999999999999997 799999999999 99999999999999999999999988877766641 11
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
++++. +. +.+||+++++.++.+++ ..++|++++||+ +...++.++++.|++ .++++++.+
T Consensus 74 --~~~v~--~~-------~~~g~~~~i~~~~~~~~-----~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~ 135 (459)
T 4fce_A 74 --LNWVL--QA-------EQLGTGHAMQQAAPHFA-----DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVK 135 (459)
T ss_dssp ---CEEE--CS-------SCCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEE
T ss_pred --cEEEe--CC-------CCCCcHHHHHHHHHhcC-----CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEe
Confidence 33432 11 23699999999977664 247999999999 567789999998865 567777777
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--- 327 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~--- 327 (507)
..+ +..|+++..| +|+|..+.|||..... ....+++++|+|+|+++.|.++++...+
T Consensus 136 ~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~ 195 (459)
T 4fce_A 136 LDN--PSGYGRIVRE-NGDVVGIVEHKDASDA-----------------QREINEINTGILVANGRDLKRWLSLLDNNNA 195 (459)
T ss_dssp CSC--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHHTCCCCST
T ss_pred cCC--CCcccEEEeC-CCcEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHHhCcccc
Confidence 665 5679998887 7999999998743211 0124789999999999988777775432
Q ss_pred CCCchhhhhHHhhhhc-CcEEEEEeccEE--EecCCHHHHHHHHHHhhccC------CCccccCC-------CCCcccCC
Q 010554 328 TSNDFGSEIIPAAIME-HDVQAYIFRDYW--EDIGTIKSFYEANMALTKES------PAFHFYDP-------KTPFYTSP 391 (507)
Q Consensus 328 ~~~d~~~dil~~li~~-~~V~~~~~~gyw--~dIgt~~~y~~An~~ll~~~------~~~~~~~~-------~~~i~~~~ 391 (507)
....+..++++.+++. .++++|..++|| .+|+||+||..|+..+..+. +...+.+| ...+...+
T Consensus 196 ~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~ 275 (459)
T 4fce_A 196 QGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDI 275 (459)
T ss_dssp TCSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSC
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCc
Confidence 2334567888887766 689999999876 67999999999987654332 00111111 11111222
Q ss_pred CcCCC------------ceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe-------------------
Q 010554 392 RFLPP------------TKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA------------------- 435 (507)
Q Consensus 392 ~~~~p------------~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~------------------- 435 (507)
.+.|. +.|+ ++.|.++.||++|.|+ +|.|.+++| ..+|.++.|.
T Consensus 276 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 355 (459)
T 4fce_A 276 TIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEIKK 355 (459)
T ss_dssp EECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEEEE
T ss_pred EECCCeeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEEee
Confidence 22222 2222 2444556666666665 455555555 1233333331
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCC-------ccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDV-------QEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~-------~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+.++++ +.|++++.|.+++||+++.||+++++.+.+++ ++..-...+..|.+| +.||++++|++|+++
T Consensus 356 ~~i~~~---~~i~~~~~i~~~~Ig~~~~ig~~~~i~~~~~~~~~~v~Ig~~~~IG~~~~I~~g-v~Ig~~~~igagsvV 430 (459)
T 4fce_A 356 ARLGKG---SKAGHLSYLGDAEIGAGVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVANGATIGAGTTV 430 (459)
T ss_dssp EEECTT---CEEEEEEEEEEEEECTTCEECTTCEEECBCSSCBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred eEEcCC---CEECCceEECCeEECCCCEECCCCEEeccccccCCCCEECCCeEEcCCCEEcCC-cEECCCCEECCCCEE
Confidence 333333 33444444456677777778888777764333 333333344444445 556777777766653
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=328.26 Aligned_cols=327 Identities=18% Similarity=0.256 Sum_probs=235.4
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
+.++.|||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+++.+++.+ ++
T Consensus 3 ~~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~--------~~ 70 (456)
T 2v0h_A 3 KKALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLAN--------EQ 70 (456)
T ss_dssp -CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTT--------CC
T ss_pred CCcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhc--------CC
Confidence 3468999999999999985 689999999999 99999999999999999999999987777766631 11
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
++++... +.+||+++++.++.+++ ..++|++++||+ +...++.++++.|++ +++++++.
T Consensus 71 ---~~~v~~~---------~~~g~~~~~~~~~~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 131 (456)
T 2v0h_A 71 ---VNWVLQT---------EQLGTAHAVQQAAPFFK-----DNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTV 131 (456)
T ss_dssp ---CEEEECS---------CCCCHHHHHHHHGGGCC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred ---cEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEe
Confidence 3443211 13699999999876663 147899999999 556789999998876 57888887
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC-
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~- 328 (507)
+.++ +..|+.+..| +|++..+.|||..... ....+++++|+|+|+++.|.++++...+.
T Consensus 132 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 191 (456)
T 2v0h_A 132 NLDN--PTGYGRIIRE-NGNVVAIVEQKDANAE-----------------QLNIKEVNTGVMVSDGASFKKWLARVGNNN 191 (456)
T ss_dssp ECSS--CTTSCEEEEE-TTEEEEEECTTTCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCS
T ss_pred ecCC--CCccceEEEc-CCcEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhcccc
Confidence 7765 5668988887 7899999998753210 01236899999999999877777643322
Q ss_pred --CCchhhhhHHhhhhc-CcEEEEEeccE--EEecCCHHHHHHHHHHhhccC------CCccccCCC-CCcccCCCcCCC
Q 010554 329 --SNDFGSEIIPAAIME-HDVQAYIFRDY--WEDIGTIKSFYEANMALTKES------PAFHFYDPK-TPFYTSPRFLPP 396 (507)
Q Consensus 329 --~~d~~~dil~~li~~-~~V~~~~~~gy--w~dIgt~~~y~~An~~ll~~~------~~~~~~~~~-~~i~~~~~~~~p 396 (507)
...+..++++.++.. .++++|..+++ |.+|+||+||..|++.+..+. +...+.++. ..+...+.+.+.
T Consensus 192 ~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~ 271 (456)
T 2v0h_A 192 AQGEYYLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKD 271 (456)
T ss_dssp TTCCCCGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSS
T ss_pred ccccEEHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCC
Confidence 233467888887765 58999999765 569999999999998765432 111122221 122233344455
Q ss_pred ceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCc
Q 010554 397 TKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDV 468 (507)
Q Consensus 397 ~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~ 468 (507)
+.|+ ++.|. ++.||++|.|+ ++.|++++| +.++.++.|. +.++++ +.||++++|. +++||+++.||+++
T Consensus 272 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~---~~I~~~~~i~~~~~ig~~~~ig~~~ 348 (456)
T 2v0h_A 272 VEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEK---AAIGPFSRLRPGAELAAETHVGNFV 348 (456)
T ss_dssp CEECSSEEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTT---CEECSSEEECTTCEECTTCEEEEEE
T ss_pred CEEcCCcEEcCCcEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCC---cEECCccEECCCCEECCCCEECCCC
Confidence 5555 36663 67888888887 677887777 3566666663 666776 6777777776 67777777777666
Q ss_pred EEec
Q 010554 469 VIVN 472 (507)
Q Consensus 469 ~i~~ 472 (507)
.|.+
T Consensus 349 ~i~~ 352 (456)
T 2v0h_A 349 EIKK 352 (456)
T ss_dssp EEES
T ss_pred EEec
Confidence 6653
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=304.82 Aligned_cols=243 Identities=19% Similarity=0.280 Sum_probs=197.1
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCcc---
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN--- 169 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~--- 169 (507)
.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+ +.....
T Consensus 2 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 80 (281)
T 3juk_A 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTN 80 (281)
T ss_dssp CCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------CC
T ss_pred ceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhccc
Confidence 37999999999999999999999999999999 9999999999999999999999999999998886432 111000
Q ss_pred ------------cCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-----HHH
Q 010554 170 ------------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-----YMD 232 (507)
Q Consensus 170 ------------~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-----l~~ 232 (507)
++ ..+.++ .+. +++||+++|+.++.++. .++|+|++||++++.+ +.+
T Consensus 81 ~~~~~~~~~~~~~~-~~i~~~--~~~-------~~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~ 144 (281)
T 3juk_A 81 KENALKSIRNIIEK-CCFSYV--RQK-------QMKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQ 144 (281)
T ss_dssp HHHHHHHHHHHHHH-CEEEEE--ECS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHH
T ss_pred chhhhhhhhccccC-ccEEEE--ecC-------CCCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHH
Confidence 11 123333 221 24799999999998884 3789999999999998 999
Q ss_pred HHHHHHHcCCceEEEEEEcCCCCCccceEEEECC--CC--cEEEEEeCCCccccccccccccccCCCccccccCCceeee
Q 010554 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM 308 (507)
Q Consensus 233 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~--~g--rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (507)
+++.|++.++ .++++..++.+.+..||++..|+ +| +|..|.|||..... .++++++
T Consensus 145 l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~ 204 (281)
T 3juk_A 145 MTSLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVI 204 (281)
T ss_dssp HHHHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEE
T ss_pred HHHHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEE
Confidence 9999998887 78888887666678999999986 78 99999999973211 2478999
Q ss_pred EEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhcc
Q 010554 309 GVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 309 Giyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~ 374 (507)
|+|+|++++|. .++...+. ......++++.+++++++++|.+++||.|||||++|++|++.+++.
T Consensus 205 GiYi~~~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 205 GRYILTPDIFE-ILSETKPGKNNEIQITDALRTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp EEEEECTTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHH-HHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99999999985 45543221 1223488999999888999999999999999999999999998864
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=286.28 Aligned_cols=237 Identities=19% Similarity=0.328 Sum_probs=194.1
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccC-chHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~-~~~l~~~l~~~~~~~~~~~ 170 (507)
.+.|+|||||||.|+||+|+|..+||+|+||+|+ |||+|++++|.++|+++|+|++++. .+++.+++.. +..|
T Consensus 22 ~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~-----~~~~ 95 (269)
T 4ecm_A 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGS-----GQEF 95 (269)
T ss_dssp --CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-----SGGG
T ss_pred ccCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhh-----cccc
Confidence 4568999999999999999999999999999999 9999999999999999999999975 4677777742 2234
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
+. .+.+.. +. +..||+++|+.+..+++ .++|+|++||++++.++.++++.|+++++++++++.+
T Consensus 96 ~~-~i~~~~--~~-------~~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~ 159 (269)
T 4ecm_A 96 GV-SFTYRV--QD-------KAGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQS 159 (269)
T ss_dssp TC-EEEEEE--CS-------SCCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEE
T ss_pred Cc-eEEEee--CC-------ccCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEE
Confidence 31 133322 21 23699999999988874 4799999999999999999999999999999999988
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC--C
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP--T 328 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~--~ 328 (507)
+++ +..||++..|+ |+|+.|.|||..+. ++++++|+|+|++++|. .++...+ .
T Consensus 160 ~~~--~~~~g~v~~d~-g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~ 214 (269)
T 4ecm_A 160 VDD--PERFGVANIQN-RKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSAR 214 (269)
T ss_dssp CSC--GGGSEEEEEET-TEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTT
T ss_pred CCC--CCCceEEEEcC-CEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCC
Confidence 776 56899999874 99999999985432 36899999999999884 4553322 1
Q ss_pred CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccC
Q 010554 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (507)
Q Consensus 329 ~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~ 375 (507)
......++++.+++++++.+|.++++|.|||||++|.+|++.+++..
T Consensus 215 ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~ 261 (269)
T 4ecm_A 215 GELEITDINNWYLKRGVLTYNEMSGWWTDAGTHVSLQRANALARDIN 261 (269)
T ss_dssp SCBCHHHHHHHHHHTTCEEEEECCSCEEECSSHHHHHHHHHHTTTCC
T ss_pred CeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCHHHHHHHHHHHHhcc
Confidence 22335789999998889999999999999999999999999987643
|
| >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=282.01 Aligned_cols=244 Identities=22% Similarity=0.289 Sum_probs=190.8
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cC-----
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FG----- 165 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~----- 165 (507)
++.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ +.
T Consensus 6 ~~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~ 84 (302)
T 2e3d_A 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_dssp CSCCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC-
T ss_pred hcccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhh
Confidence 3468999999999999999999999999999999 9999999999999999999999999899988885321 00
Q ss_pred CCc-----------ccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC------
Q 010554 166 NGT-----------NFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM------ 228 (507)
Q Consensus 166 ~~~-----------~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~------ 228 (507)
.+. .++ ..+.++. +. +..||++||+.++.++. .++|+|++||++++.
T Consensus 85 ~~~~~~l~~~~~~~~~~-~~i~~~~--~~-------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~~~ 148 (302)
T 2e3d_A 85 RVKRQLLDEVQSICPPH-VTIMQVR--QG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLS 148 (302)
T ss_dssp ---CHHHHHHHHTSCTT-CEEEEEE--CS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTTSSCTT
T ss_pred ccchhhhhhhhhccccC-cceEEee--CC-------ccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCccccch
Confidence 000 011 1233332 21 24699999999988874 378999999999873
Q ss_pred --CHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEEC----CCC---cEEEEEeCCCccccccccccccccCCCcccc
Q 010554 229 --DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG---RIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (507)
Q Consensus 229 --dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id----~~g---rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~ 299 (507)
++.++++.|++.++ +|+++.+..+ +..||++..+ ++| +|..|.|||.....
T Consensus 149 ~~~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~----------------- 208 (302)
T 2e3d_A 149 QDNLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA----------------- 208 (302)
T ss_dssp TSTHHHHHHHHHHHCC-EEEEEEECSC--GGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-----------------
T ss_pred HHHHHHHHHHHHhcCC-cEEEEEEccC--CCCccEEEecccccCCCCceeEEEEEECCCCCcc-----------------
Confidence 79999999988877 7888777643 5789999874 567 89999999863211
Q ss_pred ccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccC
Q 010554 300 RKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (507)
Q Consensus 300 ~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~ 375 (507)
.++++++|+|+|++++|. .++...+. ...+..++++.+++++++++|.++++|.|||||++|++|++.++.+.
T Consensus 209 --~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~~ 283 (302)
T 2e3d_A 209 --PSNLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRH 283 (302)
T ss_dssp --SCSEEEEEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHSCEEEEECCSCEEECSSHHHHHHHHHHHHHHC
T ss_pred --ccceEEEEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhCCEEEEEeCCeEEcCCCHHHHHHHHHHHHhcC
Confidence 236899999999999885 45543332 12335788888887789999999999999999999999997776443
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=282.03 Aligned_cols=246 Identities=19% Similarity=0.258 Sum_probs=173.7
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-c-----CC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-F-----GN 166 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~-----~~ 166 (507)
..|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.+ + ..
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 91 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAAR 91 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred CccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence 458999999999999999999999999999999 9999999999999999999999999888988875321 0 00
Q ss_pred C---------cccCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc---CCHHHHH
Q 010554 167 G---------TNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR---MDYMDFI 234 (507)
Q Consensus 167 ~---------~~~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~---~dl~~ll 234 (507)
+ ..++ ..+.++. +. +.+||+++++.++.++. .++|+|++||++++ .++.+++
T Consensus 92 ~~~~~~~~~~~~~g-~~i~~~~--~~-------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~l~ 155 (297)
T 2ux8_A 92 GKSLDVLDGTRLKP-GNIAYVR--QQ-------EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQMV 155 (297)
T ss_dssp TCCGGGGTTSCCST-TSEEEEE--CC-------SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHHHH
T ss_pred cchhhhhhhcccCC-CceEEEe--CC-------CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHHHH
Confidence 0 0011 1244442 21 23699999999988774 37899999999987 5799999
Q ss_pred HHHHHcCCceEEEEEEcCCCCCccceEEEECC--CC--cEEEEEeCCCccccccccccccccCCCccccccCCceeeeEE
Q 010554 235 QSHVDRDADITISCAAVGESRASDYGLVKIDN--MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGV 310 (507)
Q Consensus 235 ~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~--~g--rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 310 (507)
+.|++.++ .++++.+++.+.+..||++..|+ +| +|..|.|||..... .++++++|+
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Gi 215 (297)
T 2ux8_A 156 DAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGR 215 (297)
T ss_dssp HHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEEE
T ss_pred HHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEEE
Confidence 99988776 57777665444456799887663 55 89999999853211 136899999
Q ss_pred EEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCC
Q 010554 311 YVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (507)
Q Consensus 311 yif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~ 376 (507)
|+|++++|. .++...+. ...+..++++.+++++++++|.++++|.|||||++|.+|++.++...+
T Consensus 216 yi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~~ 282 (297)
T 2ux8_A 216 YILQPEVMR-ILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRP 282 (297)
T ss_dssp EEECTHHHH-HHHHTC--------CCTTGGGGTTTSCEEEEECSSEEEETTSHHHHHHHHHHHHHHCT
T ss_pred EEECHHHHH-HHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecceEEeCCCHHHHHHHHHHHHhcCh
Confidence 999999875 44543332 112246788888888899999999999999999999999988876544
|
| >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=270.02 Aligned_cols=245 Identities=18% Similarity=0.275 Sum_probs=179.8
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhccc-CCCccc--
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYF-GNGTNF-- 170 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~-~~~~~~-- 170 (507)
+|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+. ..+..+
T Consensus 2 ~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~~ 80 (259)
T 1tzf_A 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHM 80 (259)
T ss_dssp CCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEG
T ss_pred CcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhcccccccccccc
Confidence 37899999999999999999999999999999 99999999999999999999999999999988864210 000000
Q ss_pred CCCeEEEecCccCCCC---CCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEE
Q 010554 171 GDGFVEVLAATQTPGE---SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITIS 247 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~---~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~ 247 (507)
+...++++.....+.+ ..+....||+++|+.++.+++ ..++|++++||++++.++.++++.|++.++++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~ 155 (259)
T 1tzf_A 81 AENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLT 155 (259)
T ss_dssp GGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEE
T ss_pred cccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-----CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEE
Confidence 0001223211000000 000113699999999887663 24789999999999999999999999888888775
Q ss_pred EEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 248 ~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
.. .. +..||++.+| +|+|..|.|||... .+++++|+|+|++++|.. ++.
T Consensus 156 ~~--~~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~~-l~~--- 204 (259)
T 1tzf_A 156 AT--FP--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVIDL-IDN--- 204 (259)
T ss_dssp EE--CC--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGGG-CCS---
T ss_pred Ee--cC--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHHh-hcc---
Confidence 43 22 4679999888 79999999998632 258899999999998842 221
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccC
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~ 375 (507)
...+|..++++.+++++++++|.++++|.||||+++|.++++.+....
T Consensus 205 ~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~ 252 (259)
T 1tzf_A 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGK 252 (259)
T ss_dssp TTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCC
Confidence 223455788888888889999999999999999999999999987643
|
| >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=277.81 Aligned_cols=246 Identities=20% Similarity=0.268 Sum_probs=188.8
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCC-----
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGN----- 166 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~----- 166 (507)
+.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+ |..
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 458999999999999999999999999999999 9999999999999999999999999888887764211 000
Q ss_pred C--------cc--cCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCe--EEEEcCceecc--CCHHH
Q 010554 167 G--------TN--FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN--VAILCGDHLYR--MDYMD 232 (507)
Q Consensus 167 ~--------~~--~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~--~lVl~gD~i~~--~dl~~ 232 (507)
+ .. ++ ..+.++. +. +.+||+++|+.++.++. .++ |+|++||++++ .++.+
T Consensus 90 ~~~~~~~~~~~~~~g-~~i~~~~--~~-------~~~Gt~~al~~a~~~l~------~~~d~~lv~~~D~~~~~~~~l~~ 153 (323)
T 2pa4_A 90 GKTDQVEIIRRAADL-IKAVPVT--QD-------KPLGLGHAVGLAESVLD------DDEDVVAVMLPDDLVLPTGVMER 153 (323)
T ss_dssp TCHHHHHHTTHHHHH-CEEEEEE--CS-------SCCCHHHHHHTTGGGSC------SSCCEEEEECTTEEEESSCHHHH
T ss_pred chhhhhhhhhccccC-cceEEEe--CC-------ccCCcHHHHHHHHHHhc------CCCCeEEEEeCCcccCchHHHHH
Confidence 0 00 11 1243332 21 23699999999876663 244 99999999987 67999
Q ss_pred HHHHHHHcCCceEEEEEEcCCCCCccceEEEEC----CCC--cEEEEEeCCCccccccccccccccCCCccccccCCcee
Q 010554 233 FIQSHVDRDADITISCAAVGESRASDYGLVKID----NMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVA 306 (507)
Q Consensus 233 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id----~~g--rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (507)
+++.|++.++ .++++.+++.+.+..||++..| +++ +|..|.|||..... .++++
T Consensus 154 l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~ 213 (323)
T 2pa4_A 154 MAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLA 213 (323)
T ss_dssp HHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEE
T ss_pred HHHHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEE
Confidence 9999988776 5777777654446789999886 554 99999999853211 23689
Q ss_pred eeEEEEEeHHHHHHHHHhhCCC--CCchhhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccCC
Q 010554 307 SMGVYVFKKDVLFKLLRWRYPT--SNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (507)
Q Consensus 307 ~~Giyif~~~iL~~ll~~~~~~--~~d~~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~ 376 (507)
++|+|+|++++|.. ++...+. ...+..++++.++++ .++++|.++++|.|||||++|.+|++.++...+
T Consensus 214 ~~GiY~~~~~~~~~-l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~~ 285 (323)
T 2pa4_A 214 ATGRYLLDRKIFDA-LRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHP 285 (323)
T ss_dssp EEEEEEEETHHHHH-HHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTCT
T ss_pred EEEEEEECHHHHHH-HHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcCh
Confidence 99999999998854 4443332 122247889888877 799999999999999999999999988875443
|
| >4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=268.51 Aligned_cols=229 Identities=11% Similarity=0.115 Sum_probs=173.0
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHh-cCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
+||||||.||||+|+|..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+ +.+++.+.. . +++...+
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~-~---~~~~~~~ 75 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKA-T---QLGIKQF 75 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHH-H---HHTCSSE
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHH-H---HcCCCCc
Confidence 79999999999999999999999999999 999999999999 799999999998876 555654322 0 1111112
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
.++. .|. +.+||++|++.++.++.+.....+++|+|++||+++ +.++.++ ..+++.++++.++++
T Consensus 76 ~~~~-~~~-------~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~- 141 (255)
T 4evw_A 76 YIAE-LHT-------ETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG- 141 (255)
T ss_dssp EEEE-ESS-------CCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS-
T ss_pred eEEE-eCC-------CCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC-
Confidence 2221 121 247999999999988831000124789999999998 5666543 256778999988865
Q ss_pred CCccceEEEECCCC--cEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHH-HHHHHH----HhhCC
Q 010554 255 RASDYGLVKIDNMG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKD-VLFKLL----RWRYP 327 (507)
Q Consensus 255 ~~~~~g~v~id~~g--rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~-iL~~ll----~~~~~ 327 (507)
+ .||++..|++| +|++|.||+.. ++++++|+|+|++. .|.+.+ ++..+
T Consensus 142 -p-~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~ 196 (255)
T 4evw_A 142 -D-NWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPSQ 196 (255)
T ss_dssp -S-CSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCGG
T ss_pred -C-ceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhcccc
Confidence 3 79999999888 99999999431 36899999999986 343333 22221
Q ss_pred ---CCCchhhhhHHhhhhc-CcEEEEEec-cEEEecCCHHHHHHHHHH
Q 010554 328 ---TSNDFGSEIIPAAIME-HDVQAYIFR-DYWEDIGTIKSFYEANMA 370 (507)
Q Consensus 328 ---~~~d~~~dil~~li~~-~~V~~~~~~-gyw~dIgt~~~y~~An~~ 370 (507)
....+.+++++.++++ .+|.+|.++ ++|.|||||++|.++...
T Consensus 197 ~~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~ 244 (255)
T 4evw_A 197 EWERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQ 244 (255)
T ss_dssp GCSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC
T ss_pred cccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhc
Confidence 3345678999999876 579999986 999999999999998753
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=274.06 Aligned_cols=258 Identities=15% Similarity=0.161 Sum_probs=188.2
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceee--cCcchhhHHHHHHHHhcCCCEEEEEeccCc-hHHHHHHHhcccCCCcc
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV--AGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTN 169 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI--~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~ 169 (507)
.+|.|||||||.||||+| ||+|+|| +|+ |||+|+++++.++|+++|+|++++.. +++.+|+...+ .
T Consensus 4 m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~-----~ 72 (303)
T 3pnn_A 4 MKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKY-----E 72 (303)
T ss_dssp CCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHH-----T
T ss_pred CceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHh-----c
Confidence 358999999999999998 6999999 588 99999999999999999999999985 78988887443 1
Q ss_pred cCCCeEEEecCcc-CCCC-----CCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHH---
Q 010554 170 FGDGFVEVLAATQ-TPGE-----SGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVD--- 239 (507)
Q Consensus 170 ~~~~~V~vl~~~q-~~~~-----~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~--- 239 (507)
++ ..++++.... ...+ ....+++||++||+++++++ .++|+|++||++++.+ +.+++++|.+
T Consensus 73 ~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i-------~~~~lV~~gD~l~~~~~~~~l~~~~~~~~~ 144 (303)
T 3pnn_A 73 GR-IPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI-------REPFAVINADDFYGRNGFEVLARKLMTLEG 144 (303)
T ss_dssp TT-SCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC-------CSCEEEEESSCBCCHHHHHHHHHHHHTTTT
T ss_pred cC-CcEEEEecccccccccccccccccccCCcHHHHHHHHHhc-------CCCEEEEECCeecCHHHHHHHHHHHHHhcc
Confidence 11 1244432110 0000 00013579999999997666 3789999999999886 8999999986
Q ss_pred cCCceEEEEEEcCCCCCccc-----eEEEECCCCcEEEEEeCCCcccccc-ccccccccCCCccccccCCceeeeEEEEE
Q 010554 240 RDADITISCAAVGESRASDY-----GLVKIDNMGRIAQFAEKPSGANLKA-MQVDTSLLGFSPQEARKCPYVASMGVYVF 313 (507)
Q Consensus 240 ~~a~~tl~~~~~~~~~~~~~-----g~v~id~~grV~~~~eKp~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Giyif 313 (507)
+++++|+++.+++++ .+.| |++.+|++|+|+.|.|||....... ...+..- +. ......++++++|+|+|
T Consensus 145 ~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~-g~--~~~~~~~~~i~~GiY~f 220 (303)
T 3pnn_A 145 KQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDET-GK--ICTLAEDAPVSMNMWGF 220 (303)
T ss_dssp CSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTT-SC--EEEECTTCEEEEEEEEE
T ss_pred ccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCccccccccccccc-cc--cccCCCCCEEEEEEEEE
Confidence 578899999988763 1445 6889998999999999996431000 0000000 00 00001247999999999
Q ss_pred eHHHHHHHHH-------hhC--CCCCchhhhhHHhhhhcC--cEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 314 KKDVLFKLLR-------WRY--PTSNDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 314 ~~~iL~~ll~-------~~~--~~~~d~~~dil~~li~~~--~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
++++|..+.+ +.. .....++.++++.+++++ +|++|.++++|.|||||++|.+|+..+.+
T Consensus 221 ~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 221 TPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp CTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 9999865432 111 223345788999998886 79999999999999999999999988764
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-31 Score=264.90 Aligned_cols=233 Identities=25% Similarity=0.392 Sum_probs=186.3
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEe-ccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLT-QFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~-~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
+|+|||||||.||||+|+|..+||+|+||+|+ |||+|++++|..+|+++|+|++ .+..+.+.+++.+ +.+|+.
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-----g~~~g~ 75 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGD-----GSNWGL 75 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-----SGGGTC
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhc-----ccccCc
Confidence 48999999999999999999999999999999 9999999999999999999887 4566777777742 333441
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.+.+. .|. .+.|+++|++.+..++. .++++++.||+++ +.++.++++.|.+.++++++++.++
T Consensus 76 -~i~~~--~~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 139 (293)
T 1fxo_A 76 -DLQYA--VQP-------SPDGLAQAFLIGESFIG------NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV 139 (293)
T ss_dssp -EEEEE--ECS-------SCCCGGGHHHHTHHHHT------TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred -eEEEe--eCC-------CCCCHHHHHHHHHHHhC------CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEEC
Confidence 23333 222 13699999999988874 3789999999865 6789999999987777888888877
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--C
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--S 329 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~ 329 (507)
.+ +..||++.+|++|+|..|.|||..+. ++++++|+|+|++++|..+ +...+. .
T Consensus 140 ~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~~-~~~~~~~~g 195 (293)
T 1fxo_A 140 LD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDIA-RDLKPSPRG 195 (293)
T ss_dssp SC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHHH-HHCCCCTTS
T ss_pred CC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHHH-HhcCcccCC
Confidence 66 66899999999999999999985332 3689999999999998644 433322 1
Q ss_pred CchhhhhHHhhhhcCcEEEEEec-cE-EEecCCHHHHHHHHHHhh
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~-gy-w~dIgt~~~y~~An~~ll 372 (507)
.-..+++++.+++.+++.++... +| |.||||++||.+|+..+.
T Consensus 196 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 196 ELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp SCCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhcCCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 12247888888888888888875 75 999999999999998764
|
| >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.98 E-value=5e-31 Score=264.64 Aligned_cols=233 Identities=21% Similarity=0.350 Sum_probs=185.9
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEec-cCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~-~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++.|..+|+++|+|+++ +..+.+.+++.+ +.+|+.
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~-----g~~~g~ 76 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGD-----GSQFGV 76 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-----SGGGTS
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhh-----ccccCc
Confidence 37999999999999999999999999999999 99999999999999999999885 667778777742 233441
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.+.++. +. .+.|+++|++.+..++. .++++++.||+++ +.++.++++.|.+.++++++++.++
T Consensus 77 -~i~~~~--~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 140 (295)
T 1lvw_A 77 -RFSYRV--QE-------EPRGIADAFIVGKDFIG------DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV 140 (295)
T ss_dssp -EEEEEE--CS-------SCCCGGGHHHHTHHHHT------TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred -eEEEee--CC-------CCCChHHHHHHHHHHhC------CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEEC
Confidence 233332 22 13699999999988874 3678888899865 6789999999987777788888887
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--C
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--S 329 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~ 329 (507)
.+ +..||++.+|++|+|..|.|||..+. ++++++|+|+|++++|..+ +...+. .
T Consensus 141 ~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~~-~~~~~~~~g 196 (295)
T 1lvw_A 141 RD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEIA-RRIEPSDRG 196 (295)
T ss_dssp SC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHHH-HHCCCCTTS
T ss_pred CC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHHH-HhcCCcccC
Confidence 76 55799999999999999999985332 3689999999999998644 433322 1
Q ss_pred CchhhhhHHhhhhcCcEEEEEec-cE-EEecCCHHHHHHHHHHhh
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~-gy-w~dIgt~~~y~~An~~ll 372 (507)
....+++++.+++.+++.++... +| |.||||++||.+|+..+.
T Consensus 197 e~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 197 ELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHcCCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 12247788888888888888775 75 999999999999998764
|
| >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=266.20 Aligned_cols=232 Identities=23% Similarity=0.346 Sum_probs=185.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEec-cCchHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQ-FNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~-~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++.|..+|+++|+|+++ ++.+.+.+++.+ +.+|+.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~-----g~~~g~- 76 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGD-----GSEFGI- 76 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTT-----SGGGTC-
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhc-----ccccCc-
Confidence 7999999999999999999999999999999 99999999999999999999885 667777777742 233431
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
.+.++. |. .+.||++|++.+..++. .++++++.||+++ +.++.++++.|.+.+.++++++.++.
T Consensus 77 ~i~~~~--~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~ 141 (296)
T 1mc3_A 77 QLEYAE--QP-------SPDGLAQAFIIGETFLN------GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM 141 (296)
T ss_dssp EEEEEE--CS-------SCCCSTHHHHHTHHHHT------TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS
T ss_pred eEEEec--cC-------CCCCHHHHHHHHHHHhC------CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECC
Confidence 233332 22 13699999999988874 3678888899865 67899999999877777888888877
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CC
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~ 330 (507)
+ +..||++.+|++|+|..|.|||..+. ++++++|+|+|+++++.. ++...+. ..
T Consensus 142 d--p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~ge 197 (296)
T 1mc3_A 142 D--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSERGE 197 (296)
T ss_dssp C--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSSSS
T ss_pred C--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHHH-HHhcCccccCC
Confidence 6 56799999998999999999986432 368999999999999854 4443332 11
Q ss_pred chhhhhHHhhhhcCcEEEEEec-cE-EEecCCHHHHHHHHHHhh
Q 010554 331 DFGSEIIPAAIMEHDVQAYIFR-DY-WEDIGTIKSFYEANMALT 372 (507)
Q Consensus 331 d~~~dil~~li~~~~V~~~~~~-gy-w~dIgt~~~y~~An~~ll 372 (507)
-..+++++.+++.+++.++... +| |.||||+++|.+|+..+.
T Consensus 198 ~~~td~~~~~l~~g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (296)
T 1mc3_A 198 LEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFVQ 241 (296)
T ss_dssp CCHHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 2247788888888888888875 76 999999999999998775
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=260.36 Aligned_cols=240 Identities=17% Similarity=0.321 Sum_probs=154.6
Q ss_pred ceEEEEEcCCCCCcccCCcc-CCCccceee-cCcchhhHHHHHHHHhcCCCEEEEEeccCc-hHHHHHHHhcccCCCccc
Q 010554 94 NVAAIILGGGAGTKLFPLTL-RAATPAVPV-AGCYRLIDIPMSNCINSGINKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~-~~PK~LlPI-~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~ 170 (507)
+|+|||||||.||||+|||. .+||+|+|| +|+ |||+|+++++.++ +++|+|+++++. +.+.+++.+. |
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~-------~ 74 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE-------I 74 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT-------C
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh-------h
Confidence 58999999999999999997 899999999 588 9999999999999 999999999875 4566666421 2
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCC-HHHHHHH---HHHcCCceE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMD-YMDFIQS---HVDRDADIT 245 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~d-l~~ll~~---h~~~~a~~t 245 (507)
+...+.++. +. +.+||+++++.+..++. ..+.|+|++||+++ +.+ +.++++. |.+.++++|
T Consensus 75 ~~~~~~~i~--~~-------~~~gt~~al~~a~~~l~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t 140 (308)
T 2qh5_A 75 KNKSVGFLL--ES-------LSKNTANAIALSALMSD-----KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVT 140 (308)
T ss_dssp SSCEEEEEE--ES-------SCCCHHHHHHHHHHTSC-----TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCccEEEe--CC-------CCCChHHHHHHHHHHhC-----CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEE
Confidence 211234443 21 13699999999887663 13459999999988 666 8999987 777788888
Q ss_pred EEEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhh
Q 010554 246 ISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR 325 (507)
Q Consensus 246 l~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~ 325 (507)
+.+.+..+ +..||++..|++++|..|.|||........ + ...++++++|+|+|++++|.+.+++.
T Consensus 141 ~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~-~------------~~g~~~~n~Giy~~~~~~ll~~l~~~ 205 (308)
T 2qh5_A 141 FGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEF-Q------------KSGGFYFNSGMFVFQAGVFLDELKKH 205 (308)
T ss_dssp EEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHH-H------------HHCCEEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHH-h------------hcCCeEEEeEEEEEEHHHHHHHHHHh
Confidence 88877654 457999988878999999999975321000 0 00136899999999999875555433
Q ss_pred CCC--------------C----Cchh---hhhHHh---------hhhc-CcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 326 YPT--------------S----NDFG---SEIIPA---------AIME-HDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 326 ~~~--------------~----~d~~---~dil~~---------li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
.+. . .++. .++++. ++++ .+|+++.++++|.||||+++|.+++...
T Consensus 206 ~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~ 282 (308)
T 2qh5_A 206 APTILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANE 282 (308)
T ss_dssp CHHHHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC--------------
T ss_pred ChHHHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcC
Confidence 221 0 1111 344442 4544 7899999999999999999999998653
|
| >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-28 Score=238.90 Aligned_cols=221 Identities=16% Similarity=0.232 Sum_probs=163.0
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+|.|||||||.||||+|||..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+ +.+. ++
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~-~~~~-------~~-- 93 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDY-LKEK-------YG-- 93 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTH-HHHH-------HC--
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHH-HHHh-------CC--
Confidence 58999999999999999999999999999999 9999999999999999999999988777643 3322 22
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
++++...+. ...||+++++.++.++ ++++|++||+++..++ ++.+.+.++.+|+ ...+
T Consensus 94 -~~iv~~~~~-------~~~g~~~al~~a~~~~--------~~~lv~~~D~~~~~~~---~~~~~~~~~~~t~---~~~~ 151 (254)
T 1jyk_A 94 -VRLVFNDKY-------ADYNNFYSLYLVKEEL--------ANSYVIDADNYLFKNM---FRNDLTRSTYFSV---YRED 151 (254)
T ss_dssp -CEEEECTTT-------TTSCTHHHHHTTGGGC--------TTEEEEETTEEESSCC---CCSCCCSEEEEEC---EESS
T ss_pred -cEEEECCCc-------cCCCcHHHHHHHHHHC--------CCEEEEeCCcccCHHH---HHHHHhCCceEEE---Eccc
Confidence 344432221 1259999999886544 3589999999886553 2233333333332 2333
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHH---HHHHHhhCCC--
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVL---FKLLRWRYPT-- 328 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL---~~ll~~~~~~-- 328 (507)
+ ...|+++ +|++|+|+.|.|+|. ..++++|+|+|+++.+ .++++...+.
T Consensus 152 ~-~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~ 205 (254)
T 1jyk_A 152 C-TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGE 205 (254)
T ss_dssp C-SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTC
T ss_pred C-CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCC
Confidence 2 1258765 788899999999753 1478999999998743 3344432221
Q ss_pred -CCchhhhhHHhhhhcCcEEEEEec-cEEEecCCHHHHHHHHHHhhc
Q 010554 329 -SNDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 -~~d~~~dil~~li~~~~V~~~~~~-gyw~dIgt~~~y~~An~~ll~ 373 (507)
...+..++++.++...+++++.++ ++|.+|+|++||.+|++.+..
T Consensus 206 ~~e~~~~d~~~~l~~~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~ 252 (254)
T 1jyk_A 206 FVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEILKN 252 (254)
T ss_dssp CTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHHC-
T ss_pred ccccCHHHHHHHHHhhCCeEEEEecCCeEEEcCCHHHHHHHHHHhhh
Confidence 334567788888888999999998 799999999999999987753
|
| >2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=249.42 Aligned_cols=233 Identities=18% Similarity=0.269 Sum_probs=169.9
Q ss_pred eEEEEEcCCCCCcccCCc-cCCCccceeecC-cchhhHHHHHHHHhc-CCCEEEEEeccCc-hHHHHHHHhcccCCCccc
Q 010554 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT-~~~PK~LlPI~g-~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~ 170 (507)
|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++.. +.+.+++.+ ...+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~-----~~~~ 75 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPE-----LPDE 75 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTT-----SCGG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhc-----cccc
Confidence 789999999999999999 789999999999 7 9999999999997 8999999999874 445555531 1111
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC--CH----HHHHHHHHHcCCce
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DY----MDFIQSHVDRDADI 244 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~--dl----~~ll~~h~~~~a~~ 244 (507)
.+ ++. + ..+||++|+..+...+. ..+.++|++||+++.. +| ..+++.|++.++.+
T Consensus 76 ---~i-i~e---~-------~~~gta~ai~~a~~~~~-----~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~v 136 (336)
T 2x65_A 76 ---NI-IAE---P-------MKKNTAPACFIGTKLAD-----DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLF 136 (336)
T ss_dssp ---GE-EEE---S-------SCCCHHHHHHHHHTTSC-----TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEE
T ss_pred ---eE-EeC---C-------CCCCcHHHHHHHHHhhC-----CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeE
Confidence 12 221 1 13699999998865332 2467999999998854 44 44455577767777
Q ss_pred EEEEEEcCCCCCccceEEEECCC-----CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHH
Q 010554 245 TISCAAVGESRASDYGLVKIDNM-----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (507)
Q Consensus 245 tl~~~~~~~~~~~~~g~v~id~~-----grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~ 319 (507)
|+.+.+..+ ...||++..+++ ++|..|.|||......... ....+++++|+|+|+++.|.
T Consensus 137 t~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~-------------~~g~y~~n~Giy~~~~~~ll 201 (336)
T 2x65_A 137 TFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFV-------------ESGRFLWNSGMFLWKAREFI 201 (336)
T ss_dssp EEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHH-------------HHTCEEEEEEEEEEEHHHHH
T ss_pred EEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHHH-------------hcCCeEEEeeeEEEEHHHHH
Confidence 887766554 357999988764 7999999999754211000 00136899999999999885
Q ss_pred HHHHhhCCC-----------CCchhhhhHHh---------hhh-cCcEEEEEeccEEEecCCHHHHHHH
Q 010554 320 KLLRWRYPT-----------SNDFGSEIIPA---------AIM-EHDVQAYIFRDYWEDIGTIKSFYEA 367 (507)
Q Consensus 320 ~ll~~~~~~-----------~~d~~~dil~~---------li~-~~~V~~~~~~gyw~dIgt~~~y~~A 367 (507)
+.++...|. ..+|..++++. +++ ..++++++++++|.||||+++|+++
T Consensus 202 ~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 202 EEVKVCEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HHHHHHCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 555443221 01455666665 344 3789999999999999999999999
|
| >2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-27 Score=239.88 Aligned_cols=232 Identities=19% Similarity=0.273 Sum_probs=165.2
Q ss_pred eEEEEEcCCCCCcccCCc-cCCCccceeecC-cchhhHHHHHHHHhc-CCCEEEEEeccCch-HHHHHHHhcccCCCccc
Q 010554 95 VAAIILGGGAGTKLFPLT-LRAATPAVPVAG-CYRLIDIPMSNCINS-GINKIFVLTQFNSA-SLNRHIARTYFGNGTNF 170 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT-~~~PK~LlPI~g-~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~-~l~~~l~~~~~~~~~~~ 170 (507)
|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++... .+.+++ +.
T Consensus 3 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l-----~~---- 72 (337)
T 2cu2_A 3 TYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPYA-----DG---- 72 (337)
T ss_dssp EEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGC-----SS----
T ss_pred eEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHh-----cc----
Confidence 899999999999999999 689999999999 7 9999999999998 89999999998643 232222 21
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccC--CHHHHH----HHHHHcCCce
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRM--DYMDFI----QSHVDRDADI 244 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~--dl~~ll----~~h~~~~a~~ 244 (507)
..+ ++.. +.+||+.|+..+.. +... ...+.|+|++||+++.. ++..++ +.|++ ++.+
T Consensus 73 --~~~-i~e~----------~~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~v 135 (337)
T 2cu2_A 73 --IRL-LLEP----------LGRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVV 135 (337)
T ss_dssp --SEE-EEES----------SCCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEE
T ss_pred --Cce-EecC----------CCCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeE
Confidence 112 3321 13699999998877 5321 12478999999998753 344444 44544 6777
Q ss_pred EEEEEEcCCCCCccceEEEECCC----CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHH
Q 010554 245 TISCAAVGESRASDYGLVKIDNM----GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFK 320 (507)
Q Consensus 245 tl~~~~~~~~~~~~~g~v~id~~----grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ 320 (507)
|+.+.+..+ ...||++..+++ ++|..|.|||.......+ ....+++++|+|+|++++|.+
T Consensus 136 t~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~--------------~~~g~~~n~Giy~f~~~~ll~ 199 (337)
T 2cu2_A 136 ALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEY--------------IRKGYVWNGGVFAFAPATMAE 199 (337)
T ss_dssp EEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHH--------------HHTTCEEEEEEEEECHHHHHH
T ss_pred EEeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHHH--------------hhcCCEEEEEEEEEeHHHHHH
Confidence 877766544 357999998765 799999999974321100 001168999999999998855
Q ss_pred HHHhhCCCCC-ch--------hhhhHHh---------hhh-cCcEEEEEeccEEEecCCHHHHHHHHH
Q 010554 321 LLRWRYPTSN-DF--------GSEIIPA---------AIM-EHDVQAYIFRDYWEDIGTIKSFYEANM 369 (507)
Q Consensus 321 ll~~~~~~~~-d~--------~~dil~~---------li~-~~~V~~~~~~gyw~dIgt~~~y~~An~ 369 (507)
.++...|... .+ ..+.++. +++ ..++++++++++|.||||+++|+++..
T Consensus 200 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 200 LFRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHHHHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 5554432210 00 1334543 344 368999999999999999999999863
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=219.97 Aligned_cols=239 Identities=13% Similarity=0.189 Sum_probs=171.0
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.|||||+|.|||| | ||+|+||+|+ |||+|+++.+.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~--------~g-- 62 (252)
T 3oam_A 2 SFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA--------FG-- 62 (252)
T ss_dssp CEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH--------TT--
T ss_pred ceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH--------cC--
Confidence 478999999999999 4 7999999999 99999999999999999999995 4677777752 22
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
++++...+. +..||+++ ..+...+. ....+.|++++||. +...++.++++.|.+.++++++++.++
T Consensus 63 -~~v~~~~~~-------~~~Gt~~~-~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v 130 (252)
T 3oam_A 63 -GVVCMTSPN-------HQSGTERL-AEVVAKMA---IPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEI 130 (252)
T ss_dssp -CEEEECCTT-------CCSHHHHH-HHHHHHTT---CCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEE
T ss_pred -CEEEEcCCC-------CCCcHHHH-HHHHHhcC---cCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeec
Confidence 233332221 23699984 44544442 01247899999998 446779999999998888999999998
Q ss_pred CCCCCccc-----eEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC
Q 010554 252 GESRASDY-----GLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (507)
Q Consensus 252 ~~~~~~~~-----g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~ 326 (507)
++ +..| |.+..|++|+++.|.++|-........-... ....+++.++|+|+|++++|..+....
T Consensus 131 ~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~~~~~--------~~~~~~~~n~GiY~~~~~~l~~~~~~~- 199 (252)
T 3oam_A 131 ED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFAKADK--------AIVQPLLRHIGIYAYRAGFINTYLDWQ- 199 (252)
T ss_dssp CC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHHSSSC--------CCCSCEEEEEEEEEEETTHHHHHHHSC-
T ss_pred CC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccccccc--------cccccceEEEEEEEcCHHHHHHHHcCC-
Confidence 76 4556 8999999999999999875332110000000 001247999999999999998876532
Q ss_pred CCCCchhh--hhHHhhhhcCcEEEEEec-cEEEecCCHHHHHHHHHHhhcc
Q 010554 327 PTSNDFGS--EIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 327 ~~~~d~~~--dil~~li~~~~V~~~~~~-gyw~dIgt~~~y~~An~~ll~~ 374 (507)
++.....+ +.+..+-...+|.++..+ .+|.|||||+||.+|+..+.++
T Consensus 200 ~~~~e~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 200 PSQLEKIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCcccccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 22111111 223322345799998765 4689999999999999887653
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=203.43 Aligned_cols=237 Identities=14% Similarity=0.174 Sum_probs=160.2
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.|||||+|.||||. ||+|+||+|+ |||+|+++.+.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 9 ~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~--------~g-- 69 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED--------FG-- 69 (256)
T ss_dssp CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH--------TT--
T ss_pred CceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH--------cC--
Confidence 5799999999999994 8999999999 99999999999999999999986 4667666642 22
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-c-cCCHHHHHHHHHHc-CCceEEEEEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDR-DADITISCAA 250 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~-~~dl~~ll~~h~~~-~a~~tl~~~~ 250 (507)
++++...+ +++.||++ ++.+...+.. ...+.|+++.||.. . ...+..+++.|++. ++++++++.+
T Consensus 70 -~~v~~~~~-------~~~~Gt~~-i~~a~~~l~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~ 137 (256)
T 3tqd_A 70 -AVVCMTSS-------DHQSGTER-IAEAAVALGF---EDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTP 137 (256)
T ss_dssp -CEEEECCT-------TCCSHHHH-HHHHHHHTTC---CTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEE
T ss_pred -CeEEEeCC-------CCCCcHHH-HHHHHHHhCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeE
Confidence 23332222 23468887 6677666520 12478999999993 3 56789999999874 5678888888
Q ss_pred cCCC----CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC
Q 010554 251 VGES----RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (507)
Q Consensus 251 ~~~~----~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~ 326 (507)
+.++ ++..++ +.+|++|+++.|.+||......... .........+++...|+|.|++++|..+... .
T Consensus 138 v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~-------~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l-~ 208 (256)
T 3tqd_A 138 ITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFS-------DKENLQLNGSHYRHVGIYAYRVGFLEEYLSW-D 208 (256)
T ss_dssp CCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTT-------CGGGCCCSSCCEEEEEEEEEEHHHHHHHHHS-C
T ss_pred cCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCcccc-------cccccccCCcceEEEEEEEcCHHHHHHHHhC-C
Confidence 7541 233344 4578899999999998632110000 0000000125789999999999999877543 2
Q ss_pred CCCCchhh--hhHHhhhhcCcEEEEEeccE-EEecCCHHHHHHHHHH
Q 010554 327 PTSNDFGS--EIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMA 370 (507)
Q Consensus 327 ~~~~d~~~--dil~~li~~~~V~~~~~~gy-w~dIgt~~~y~~An~~ 370 (507)
++.....+ +.+..+-...+|+++..+++ |.+||||+||.+|+..
T Consensus 209 ~s~lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~ 255 (256)
T 3tqd_A 209 ACPAEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAY 255 (256)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTT
T ss_pred CCcccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHh
Confidence 32111111 22333345679999999875 8999999999999753
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=204.60 Aligned_cols=237 Identities=15% Similarity=0.216 Sum_probs=165.1
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.|||||||.|||| | +|+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++.+ ++
T Consensus 18 ~~~aIIlA~G~stRl-p-----~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~--------~g-- 78 (264)
T 3k8d_A 18 SFVVIIPARYASTRL-P-----GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEA--------AG-- 78 (264)
T ss_dssp CCEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH--------TT--
T ss_pred ceEEEEEcCCCCCCC-C-----CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH--------cC--
Confidence 479999999999999 2 5999999999 99999999999999999999985 4667666642 22
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
++++...+ .++.||+. +..+...+. ....+.|+++.||. +...++.++++.|.+.++++++++.++
T Consensus 79 -~~v~~~~~-------~~~~Gt~~-i~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v 146 (264)
T 3k8d_A 79 -GEVCMTRA-------DHQSGTER-LAEVVEKCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPI 146 (264)
T ss_dssp -CEEEECCT-------TCCSHHHH-HHHHHHHHT---CCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEEC
T ss_pred -CEEEEecC-------CCCCCHHH-HHHHHHHhc---cCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEc
Confidence 23332222 23468887 777766663 11347899999998 446778999999998889999999988
Q ss_pred CCC----CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 252 GES----RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 252 ~~~----~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
.++ ++..+. +.+|++|+++.|.+||..........+. .....+++.++|+|+|++++|..+... .+
T Consensus 147 ~d~~~~~~p~~vk-Vv~d~~g~~l~fsr~~ip~~r~~~~~~~--------~~~~~~~~~~~GiY~y~~~~l~~~~~~-~~ 216 (264)
T 3k8d_A 147 HNAEEAFNPNAVK-VVLDAEGYALYFSRATIPWDRDRFAEGL--------ETVGDNFLRHLGIYGYRAGFIRRYVNW-QP 216 (264)
T ss_dssp CSHHHHTCTTSCE-EEECTTSBEEEEESSCCSCCHHHHHHCS--------SCCCSCCEEECSEEEEEHHHHHHHHHS-CC
T ss_pred CCHHHccCCCceE-EEECCCCeEEEEecCCCCCCCccccccc--------cccCCcceEEEEEEEECHHHHHHHHhC-CC
Confidence 752 122223 4578999999999998532110000000 000124789999999999999887653 22
Q ss_pred CCCchhh--hhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHh
Q 010554 328 TSNDFGS--EIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 328 ~~~d~~~--dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~l 371 (507)
......+ +.+..+-...+|+++...+ +|.+|+||+||..|+..+
T Consensus 217 ~~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 217 SPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp CHHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred ChhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 2111111 2233333457999986654 589999999999998653
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=193.07 Aligned_cols=225 Identities=15% Similarity=0.184 Sum_probs=154.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.|||||||.|+||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+ +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~--------~--- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVED--------L--- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT--------T---
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh--------c---
Confidence 3789999999999997 8999999999 9999999999999 9999999976 566666631 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
+.++...+. +..|+++++. +...+ ..+.|++++||+ +++ .++.++++.|.+.++.+++.....
T Consensus 61 -~~~~~~~~~-------~~~g~~~~~~-~~~~~------~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 125 (234)
T 2y6p_A 61 -CEVFLTPSD-------LPSGSDRVLY-VVRDL------DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDK 125 (234)
T ss_dssp -SEEEECCTT-------CCSHHHHHHH-HHTTC------CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECS
T ss_pred -eEEEECCcc-------cccchHHHHH-HHHhC------CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCH
Confidence 122221111 1258888763 33222 247899999999 776 779999999988775455544421
Q ss_pred CC-CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 252 GE-SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 252 ~~-~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
.+ ..+..+++ ..|++|+|..|.|||....... . ..+.+.++|+|+|+++.|..+.+.. +...
T Consensus 126 ~~~~~~~~~~~-~~~~~g~v~~~~e~~~~~~~~~--~-------------~~~~~~~~giy~~~~~~l~~~~~~~-~~~~ 188 (234)
T 2y6p_A 126 EAYERPEDVKV-VLDREGYALYFSRSPIPYFRKN--D-------------TFYPLKHVGIYGFRKETLMEFGAMP-PSKL 188 (234)
T ss_dssp GGGGCTTSCEE-EECTTSBEEEEESSCCSCCSSC--C-------------SSCCEEEEEEEEEEHHHHHHHHHSC-CCHH
T ss_pred HHhcCCCceEE-EEcCCCCEeeeecCCCCccccc--c-------------cceeeEEEEEEEcCHHHHHHHHhCC-CCcc
Confidence 11 12333443 4577899999999874311000 0 0125679999999999987765421 1111
Q ss_pred chhhh--hHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 331 DFGSE--IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 331 d~~~d--il~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
..... .+..+..+.++++|..+++|.||+||+||..|++.+
T Consensus 189 ~~~d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~ 231 (234)
T 2y6p_A 189 EQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKL 231 (234)
T ss_dssp HHHHTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHH
Confidence 11111 123233468999999999999999999999998765
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=195.86 Aligned_cols=229 Identities=17% Similarity=0.250 Sum_probs=159.0
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCC-CEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGI-NKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi-~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~--------~~- 63 (245)
T 1h7e_A 2 KAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA--------FG- 63 (245)
T ss_dssp CEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH--------TT-
T ss_pred CeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH--------cC-
Confidence 478999999999999 6 9999999999 999999999999996 999999986 566666642 12
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ccCCHHHHHHHHHHc-CCceEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDR-DADITISCA 249 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i--~~~dl~~ll~~h~~~-~a~~tl~~~ 249 (507)
++++...+ .+..|+++++..+. .++ .+.+++++||+. ...++.++++.|++. ++++++++.
T Consensus 64 --~~~~~~~~-------~~~~g~~~~~~~~~-~~~------~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 127 (245)
T 1h7e_A 64 --GKAIMTRN-------DHESGTDRLVEVMH-KVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp --CEEEECCS-------CCSSHHHHHHHHHH-HSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred --CeEEeCCC-------ccCCcHHHHHHHHH-hCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEee
Confidence 34443222 12358877664433 222 478999999994 356789999999888 788888777
Q ss_pred EcCCCCCccceE--EEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 250 AVGESRASDYGL--VKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 250 ~~~~~~~~~~g~--v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
+.+.....+++. +..+++|++..|.+++....... ...+.+.++|+|+|+++.|..++ .. +
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~-~~-~ 190 (245)
T 1h7e_A 128 AISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYS-QL-P 190 (245)
T ss_dssp EECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGG-GS-C
T ss_pred cCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHH-hC-C
Confidence 762111011222 22367899999988653211000 00125779999999999887655 22 2
Q ss_pred CCCchhhhhHHhhh---hcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 328 TSNDFGSEIIPAAI---MEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 328 ~~~d~~~dil~~li---~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
.......+.++.+. ...+++++..+++|.||+||+||..|+..+..
T Consensus 191 ~~~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~~ 239 (245)
T 1h7e_A 191 ESMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMAQ 239 (245)
T ss_dssp CCHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 11112345554432 35799999999999999999999999876643
|
| >2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-23 Score=197.84 Aligned_cols=215 Identities=17% Similarity=0.231 Sum_probs=135.9
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|++|.|||||||.|+||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ ++.+++.+++.+.| +
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~-------~ 81 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDK-------G 81 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTS-------C
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhc-------C
Confidence 66799999999999999986 9999999999 9999999999999 99999999 77778877764322 1
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
..+.++.... +..|++++++.+...++ +++++++||+.++.++ ++...+.. . +++....
T Consensus 82 -~~~~~v~~~~--------~~~g~~~~i~~a~~~~~-------~~~lv~~~D~p~~~~~---~~~l~~~~-~-~~~~~~~ 140 (232)
T 2xme_A 82 -FNYKIVRHDR--------PEKGNGYSLLVAKNHVE-------DRFILTMGDHVYSQQF---IEKAVRGE-G-VIADREP 140 (232)
T ss_dssp -CCEEEEECSC--------GGGCHHHHHHTTGGGCC-------SSEEEEETTEEECHHH---HHHHTTCC-E-EEEESSC
T ss_pred -CcEEEEECCC--------CCCCcHHHHHHHHHHCC-------CCEEEEcCCcccCHHH---HHHHHhCC-C-cEEEccc
Confidence 1255553221 22699999998865442 6799999999875442 33332221 1 2221111
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCc
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d 331 (507)
....+.+++.+..+ +|+|..+.+++.. .+.+++|+|+|++++|.. +++.......
T Consensus 141 ~~~~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~~-l~~~~~~g~~ 195 (232)
T 2xme_A 141 RFVDIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFEH-AEKLRDREEI 195 (232)
T ss_dssp SSSCTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHHH-HGGGTTSSCC
T ss_pred cccCCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHHH-HHHHHhcChh
Confidence 11123457777665 6899999887642 256799999999999864 4443222111
Q ss_pred hhhhhHHhhhhcCcEEEEEec-cEEEecCCHHHHHHHHHH
Q 010554 332 FGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMA 370 (507)
Q Consensus 332 ~~~dil~~li~~~~V~~~~~~-gyw~dIgt~~~y~~An~~ 370 (507)
. +..++++.++.++.++ ++|.|||||+||.+|+..
T Consensus 196 ~----l~~ll~~~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 196 P----LSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp C----HHHHHHHHTCBEEECCSCCEEEEECC---------
T ss_pred H----HHHHHHcCCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 1 2334444467777776 689999999999988754
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-21 Score=187.95 Aligned_cols=242 Identities=14% Similarity=0.185 Sum_probs=161.3
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.|||||||.|+||. +|+|+|++|+ |||+|+++.+.++|+++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~--------~~-- 62 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS--------FG-- 62 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH--------TT--
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh--------cC--
Confidence 3789999999999995 3999999999 999999999999999999999975 456666642 12
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
++++...+ .+..|++ .+..+...+.. ...+.+++++||+ +...++.++++.|.+.++++++++.++
T Consensus 63 -~~~~~~~~-------~~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 130 (262)
T 1vic_A 63 -AEVCMTSV-------NHNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKI 130 (262)
T ss_dssp -CEEEECCC-------SSCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEEC
T ss_pred -CEEEECCc-------cccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 33332111 1234776 45555555531 1246799999998 345678999999988888888888887
Q ss_pred CCCC---CccceEEEECCCCcEEEEEeCCCcccccccccc--ccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC
Q 010554 252 GESR---ASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVD--TSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (507)
Q Consensus 252 ~~~~---~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~ 326 (507)
.++. ...++.+..+++|+++.|.+++..........+ .. ....| ..+..++|+|+|++++|..+... .
T Consensus 131 ~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~-~~~~p-----~~~~~~~giy~~~~~~l~~~~~~-~ 203 (262)
T 1vic_A 131 HDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQ-KVQLS-----DAYLRHIGIYAYRAGFIKQYVQW-A 203 (262)
T ss_dssp CCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGG-GCCCC-----TTCEEEEEEEEEEHHHHHHHHHS-C
T ss_pred CCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcccccccccc-ccccc-----cceEEEEEEEEeeHHHHHHHHhC-C
Confidence 6520 113444555778999999887632110000000 00 00001 12578999999999988765432 1
Q ss_pred CCCCchhhhhHH--hhh-hcCcEEEEEec-cEEEecCCHHHHHHHHHHhhcc
Q 010554 327 PTSNDFGSEIIP--AAI-MEHDVQAYIFR-DYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 327 ~~~~d~~~dil~--~li-~~~~V~~~~~~-gyw~dIgt~~~y~~An~~ll~~ 374 (507)
+...+.. ++++ .++ ...+++++..+ ++|.||+||+||..|+..+...
T Consensus 204 ~~~~~~~-e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~ 254 (262)
T 1vic_A 204 PTQLENL-EKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAAN 254 (262)
T ss_dssp CCHHHHH-HTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCchhhh-hhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhc
Confidence 1111111 1221 233 45799999998 7999999999999999887643
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=183.82 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=160.0
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHH-HHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPM-SNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L-~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+.|||||+|.||||. +|+|+||+|+ |||+|++ +.+.++++++|+|++++ +.+.+++. . ++
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~-~-------~g-- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATDD--ERIAEICR-A-------EG-- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH-T-------TT--
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHH-H-------cC--
Confidence 469999999999996 4999999999 9999999 99999999999999964 56666653 1 22
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHc-CCceEEEEEE
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDR-DADITISCAA 250 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~-~a~~tl~~~~ 250 (507)
++++...+. +..|| +++..+...+.. ...+.|+++.||. +. ...+..+++.|++. ++.+..++.+
T Consensus 63 -~~v~~~~~~-------~~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~ 130 (253)
T 4fcu_A 63 -VDVVLTSAD-------HPSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEP 130 (253)
T ss_dssp -CCEEECCTT-------CCCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEE
T ss_pred -CeEEEeCCC-------CCChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEE
Confidence 223221111 12477 477777766631 1247899999999 33 46789999999876 3444444444
Q ss_pred cCC----CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhC
Q 010554 251 VGE----SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326 (507)
Q Consensus 251 ~~~----~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~ 326 (507)
..+ .++..+. +..|++|+++.|.++|-.........+.. .....++.++|+|+|++++|..+... .
T Consensus 131 ~~~~~~~~~p~~~k-vv~d~~g~~l~fsr~~ip~~r~~~~~~~~--------~~~~~~~~~~GiY~f~~~~l~~~~~~-~ 200 (253)
T 4fcu_A 131 IHALDEFQRDSIVK-VVMSKQNEALYFSRATIPYDRDGAKRDEP--------TLHTQAFRHLGLYAYRVSLLQEYVTW-E 200 (253)
T ss_dssp CCCHHHHHCTTSCE-EEECTTSBEEEEESSCCSCCTTTSSSSSC--------CCCSCCEEEEEEEEEEHHHHHHHTTS-C
T ss_pred cCCHHHccCCCccE-EEECCCCeEEEecCCCCCCCCCccccccc--------ccccceeEEEEEEEeCHHHHHHHHhC-C
Confidence 322 1233444 56788999999999875322110000000 00124688999999999999887532 1
Q ss_pred CCCCchhhhhH---HhhhhcCcEEEEEeccE-EEecCCHHHHHHHHHHhhcc
Q 010554 327 PTSNDFGSEII---PAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 327 ~~~~d~~~dil---~~li~~~~V~~~~~~gy-w~dIgt~~~y~~An~~ll~~ 374 (507)
++. -...|.+ ..+-...+|+++..+++ |.+||||+||..|+..+.++
T Consensus 201 ~~~-le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 201 MGK-LEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp CCH-HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred CCc-ccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 221 1112333 22234579999999999 99999999999999766543
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=180.53 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=154.3
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
..+.|||||||.|+||.+ ..+||+|+|++|+ |||+|+++++.+++ +++|+|++++......+++.+.|...
T Consensus 2 ~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~----- 73 (246)
T 3f1c_A 2 SLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISD----- 73 (246)
T ss_dssp CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCC-----
T ss_pred CccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCC-----
Confidence 457899999999999987 5789999999999 99999999999997 99999999987654333333344211
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhc-CCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN-RNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~-~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
..+.++.. + .+..++++.++..+.+... ...+.++++.||. +....+.++++.|.+.++. +.+
T Consensus 74 -~~~~~~~~-~----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i~~ 139 (246)
T 3f1c_A 74 -DRIVVIEG-G----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--DTV 139 (246)
T ss_dssp -TTEEEEEC-C----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--EEE
T ss_pred -CCEEEECC-C----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--EEE
Confidence 12444431 1 2678899999888863100 1247899999998 4466789999999887754 444
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.++.+ .++..++++.|..+.+++.. +..-.-++|+.+.|.+.++.....
T Consensus 140 ~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~~~~ 188 (246)
T 3f1c_A 140 IEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNLTPE 188 (246)
T ss_dssp EECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTSCHH
T ss_pred Eeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHHHHc
Confidence 55543 34444555666655554431 122245799999888877653111
Q ss_pred CCchhhhhHHhhhh-cCcEEEEEeccEEEecCCHHHHHHHHHHhhccC
Q 010554 329 SNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTKES 375 (507)
Q Consensus 329 ~~d~~~dil~~li~-~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~ 375 (507)
...+.+|.+..+.. ..+|..+..+.+|.+|+||+||..|+..+..+.
T Consensus 189 ~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 189 KKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp HHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred CCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 11234455544433 468999999999999999999999998876553
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=177.61 Aligned_cols=223 Identities=12% Similarity=0.054 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCc-hHHHHHHHhcccCCCcccCC
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~~~ 172 (507)
|.|||||||.|+||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|+++++. +.+.+++. .+ + ..+.
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~-~~-~--~~~~- 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVD-KY-L--PLYK- 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHH-HH-C--GGGG-
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHH-hc-c--cccc-
Confidence 7899999999999998 6799999999999 9999999999998 5999999999887 44555443 22 1 0110
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcC--CCCeEEEEcCce-e-ccCCHHHHHHHHHHcCCceEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNR--NIENVAILCGDH-L-YRMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~--~~~~~lVl~gD~-i-~~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
..+.... . ..|+.++++.++..+.+. .. ..+.+++++||+ + ...++.++++.|++.++ ++++
T Consensus 75 ~~~~~~~--~---------~~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~ 140 (236)
T 2vsh_A 75 ERIIITK--G---------GADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTV 140 (236)
T ss_dssp GGEEEEE--C---------CSSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEE
T ss_pred CceEEEC--C---------CCchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEE
Confidence 0122221 1 037889999888777421 01 136788999999 4 45678999999988765 3445
Q ss_pred EEcCCCCCccceEEEECCCC-cEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 249 AAVGESRASDYGLVKIDNMG-RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~g-rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
.++.+ + +..+++| ++..+.+++.. ......|+|+++.|..+++....
T Consensus 141 ~~~~~--~-----~~~~~~g~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~~ 188 (236)
T 2vsh_A 141 VEAVD--T-----IVESTNGQFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLSD 188 (236)
T ss_dssp EECCS--C-----EEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCCH
T ss_pred Eeccc--c-----EEEeCCCCeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHHh
Confidence 55543 2 2224567 77766654321 11123789999988776653211
Q ss_pred CCCchhhhhHHhhhh-cCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 328 TSNDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 328 ~~~d~~~dil~~li~-~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
.......+.+..+.. ..++.++..+++|.||+||+||..|+..+
T Consensus 189 ~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~ 233 (236)
T 2vsh_A 189 EEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMI 233 (236)
T ss_dssp HHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHT
T ss_pred cCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHh
Confidence 100001222333332 36899998888999999999999998765
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=166.61 Aligned_cols=220 Identities=10% Similarity=0.055 Sum_probs=135.2
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
.+|.|||||||.|+||++ ..||+|+|++|+ |||+|+++.+..++ +++|+|++++..+.+.+ +.+ + +
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~-~------ 71 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQT-A-F------ 71 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHH-H-C------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHh-c-C------
Confidence 358999999999999996 689999999999 99999999999985 99999999987766655 532 1 1
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhc-CCCCeEEEEcCcee-c-cCCHHHHHHHHHHcCCceEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN-RNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~-~~~~~~lVl~gD~i-~-~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
...++++. . ..|++++++.+...+.+... ...+.++++.||.. . ...+.++++.|.+.+.. .+++
T Consensus 72 ~~~i~~~~--~---------~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~~ 139 (231)
T 1vgw_A 72 PQVRVWKN--G---------GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GILA 139 (231)
T ss_dssp TTSEEECC--C---------CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEEE
T ss_pred CCceEEEc--C---------CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEEE
Confidence 01244431 1 14899999998877741000 02478999999983 3 45588999988765522 3444
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.+..+. +... ++|++....++ .. .+.....|+|+.+.|..+++.....
T Consensus 140 ~~~~~~------~~~~-~~g~i~~~~~~---~~----------------------~~~~~~p~~f~~~~l~~~~~~~~~~ 187 (231)
T 1vgw_A 140 VPVADT------LKRA-ESGQISATVDR---SG----------------------LWQAQTPQLFQAGLLHRALAAENLG 187 (231)
T ss_dssp EECCSC------EEEE-SSSBEEEEECC---TT----------------------EEEEEEEEEEEHHHHHHHHHC----
T ss_pred eecccc------eEEe-CCCceEecCCh---HH----------------------heeeeCCcEecHHHHHHHHHHHhhc
Confidence 554331 1112 45665543221 10 1222348999999887776542211
Q ss_pred CCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 329 SNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 329 ~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
.......++... ..++..+..+++|.||+||+||..|+..+
T Consensus 188 g~~~~~~~~~~~--~~~v~~v~~~~~~~dIdtpeDl~~a~~~l 228 (231)
T 1vgw_A 188 GITDEASAVEKL--GVRPLLIQGDARNLKLTQPQDAYIVRLLL 228 (231)
T ss_dssp CCCSHHHHHHTT--TCCCEEEECCTTCCCCCSHHHHHHHHHHC
T ss_pred CCCcHHHHHHHc--CCCEEEEECCccccCcCCHHHHHHHHHHH
Confidence 111112233221 36788888778999999999999998654
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=169.08 Aligned_cols=214 Identities=15% Similarity=0.076 Sum_probs=147.9
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchH-HHHHHHhcccCCCcccC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSAS-LNRHIARTYFGNGTNFG 171 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~-l~~~l~~~~~~~~~~~~ 171 (507)
+|.|||||||.||||+ ..+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.... +.+++ . + .
T Consensus 2 ~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~-----~-~--~- 68 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVF-----G-G--E- 68 (223)
T ss_dssp CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHT-----C-B--T-
T ss_pred ceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHh-----c-c--C-
Confidence 3789999999999998 4689999999999 99999999999988 99999999987643 32222 1 0 1
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+.++. +. .+++++++.++..++ ..+.++++.||+ +. ..++.++++.|. .+.++++.+.
T Consensus 69 --~v~~~~--~~---------~~~~~~i~~al~~~~-----~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~ 129 (223)
T 2xwl_A 69 --DSVIVS--GG---------VDRTESVALALEAAG-----DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGL 129 (223)
T ss_dssp --TEEEEE--CC---------SSHHHHHHHHHTTCT-----TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEE
T ss_pred --CeEEEc--CC---------CCHHHHHHHHHHhcC-----CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEE
Confidence 144442 11 267888888875552 246789999998 33 457899999883 3446677666
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
+..+ +..+ .|++|++..+.|++.. ......|+|++..+..+++...
T Consensus 130 ~~~d--~~~~----~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~--- 175 (223)
T 2xwl_A 130 APAD--TIKA----VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT--- 175 (223)
T ss_dssp CCSS--CEEE----ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC---
T ss_pred eccc--ceEE----EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh---
Confidence 6554 2222 3777899888776421 1112357899988776654321
Q ss_pred CchhhhhHHhhhh-cCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 330 NDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 330 ~d~~~dil~~li~-~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
.++..+....+.. ..++..+..+++|.||+||+||..|+..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 220 (223)
T 2xwl_A 176 AGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAH 220 (223)
T ss_dssp SCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhh
Confidence 1222333332222 4678888888899999999999999876643
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=170.27 Aligned_cols=216 Identities=16% Similarity=0.117 Sum_probs=146.6
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.|||||||.|+||. ||+|+|++|+ |||+|+++.+.+++ +++|+|++++ +.+.+++. . ++
T Consensus 4 ~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~-~-------~~- 65 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAK-N-------FG- 65 (228)
T ss_dssp EEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHH-H-------TT-
T ss_pred ceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHH-H-------cC-
Confidence 4679999999999997 8999999999 99999999999998 7999999964 44555553 2 12
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i--~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
++++....... .+..|++++++.++..+. ...+.++++.||+. ...++.++++.|++.++++++.+.+
T Consensus 66 --~~~~~~~~~~~----~~~~g~~~sv~~~l~~~~----~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~ 135 (228)
T 1ezi_A 66 --VEVVLRPAELA----SDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP 135 (228)
T ss_dssp --CEEEECCC----------CHHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred --CEEEeCchHHc----CCCCChHHHHHHHHHHhC----CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 22221111000 012588999999987773 12467999999983 3467899999888777788888877
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCC-ccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPS-GANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
..+. + ++...+|++|++..+.+... .... +. ....+..+.|+|+++++.|...++
T Consensus 136 ~~~~-p--~~~~~~~~~g~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~giy~~~~~~l~~~~~------ 191 (228)
T 1ezi_A 136 MEHH-P--LKTLLQINNGEYAPMRHLSDLEQPR--------------QQ-LPQAFRPNGAIYINDTASLIANNC------ 191 (228)
T ss_dssp CSSC-T--TSCEEECC--CEEESSCHHHHTCCG--------------GG-SCCEEEEEEEEEEEEHHHHHHHTS------
T ss_pred cCCC-c--ceeeEEcCCCcEeeccccccccCCc--------------cc-CchhheeeeEEEEEeHHHHhhCCc------
Confidence 7652 2 22233477888888865210 0000 00 001245678999999988754210
Q ss_pred CchhhhhHHhhhhcCcEEEEEec-cEEEecCCHHHHHHHHHHhh
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~-gyw~dIgt~~~y~~An~~ll 372 (507)
....++.++..+ .+|.||+||+||..|+..+.
T Consensus 192 -----------~~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~ 224 (228)
T 1ezi_A 192 -----------FFIAPTKLYIMSHQDSIDIDTELDLQQAENILN 224 (228)
T ss_dssp -----------SCCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC
T ss_pred -----------ccCCceEEEEeCcccccCCCCHHHHHHHHHHHH
Confidence 014577778776 58999999999999987654
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=171.15 Aligned_cols=220 Identities=13% Similarity=0.092 Sum_probs=139.5
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
.++.|||||||.|+||. ..+||+|+|++|+ |||+|+++.+.++ ++++|+|++++..+.+.+++.. .++
T Consensus 3 ~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~-------~~~ 71 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEE-------SID 71 (228)
T ss_dssp TCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTT-------TSS
T ss_pred cceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHH-------hCC
Confidence 46899999999999997 4689999999999 9999999999998 8999999999887666554432 121
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
..+.++.. . .|..++++.++..+++ ..+.++++.||. +...++..+++.|++.++ ++++.
T Consensus 72 -~~v~~~~~-~----------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~~ 133 (228)
T 2yc3_A 72 -VDLSFAIP-G----------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGV 133 (228)
T ss_dssp -SEEEEECC-C----------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEE
T ss_pred -CcEEEECC-C----------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEEE
Confidence 12444421 1 3888999988766531 236788999997 345668999999987654 45555
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
+..+. +..+++++.+..+.+++. .....+ .|+|+.+.|.+.++......
T Consensus 134 ~~~~~------~~~~~~~~~v~~~~~~~~------------------------~~~~~~-~~~f~~~~l~~~~~~~~~~~ 182 (228)
T 2yc3_A 134 PAKAT------IKEVNSDSLVVKTLDRKT------------------------LWEMQT-PQVIKPELLKKGFELVKSEG 182 (228)
T ss_dssp ECCSC------CCCBCTTSCBCCCCSCCC------------------------CEEEEE-EEEECHHHHHHHHHHHHHHT
T ss_pred eccce------EEEEcCCCceEEecCccc------------------------eEEEeC-CcEEEHHHHHHHHHHHHhcC
Confidence 54331 112344445443221110 123333 89999887766654311111
Q ss_pred CchhhhhHHhhhh-cCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 330 NDFGSEIIPAAIM-EHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 330 ~d~~~dil~~li~-~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
. +..+.+..+.+ ..++..+..+..|.||+||+||..|+..+..
T Consensus 183 ~-~~~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 226 (228)
T 2yc3_A 183 L-EVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE 226 (228)
T ss_dssp C-CCCSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred C-CcccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhh
Confidence 1 12333333333 3567655555679999999999999876543
|
| >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-20 Score=177.51 Aligned_cols=200 Identities=14% Similarity=0.118 Sum_probs=140.9
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+|.+||||||. |||.+.+...||+|+|++|+ |||+|+++.+..+++ +|+|+++. +.+ +.++ +
T Consensus 2 ~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i-----~~~~------~-- 63 (232)
T 2dpw_A 2 RPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGL-----VPAP------A-- 63 (232)
T ss_dssp CCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSC-----SSCC------S--
T ss_pred ceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHH-----hhhc------C--
Confidence 37899999999 88887776789999999999 999999999999998 88887553 322 1111 1
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
+++ .. ..|++++++.+...++ +.|+|++||+ +...++.++++ | ..++++++.+.+.
T Consensus 64 -~~~---~~---------~~g~~~~i~~a~~~~~-------~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~ 121 (232)
T 2dpw_A 64 -LTL---PD---------RGGLLENLEQALEHVE-------GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPK 121 (232)
T ss_dssp -EEE---CC---------CSSHHHHHHHHHHTCC-------SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEH
T ss_pred -eEe---cC---------CCCHHHHHHHHHHHcC-------CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeec
Confidence 444 11 2599999999875542 7899999999 55667889998 7 6667788877764
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhh-----C
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWR-----Y 326 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~-----~ 326 (507)
++.. ..|+.+ .++|..+.||| .+++|+|+|++++|..+.+.. .
T Consensus 122 ~~~~-~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~ 169 (232)
T 2dpw_A 122 EAVE-ARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVAL 169 (232)
T ss_dssp HHHH-HHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHT
T ss_pred cchh-hhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHh
Confidence 3210 223322 24577776553 368999999999876554321 1
Q ss_pred CC-------------------CCchhhhhHHhhhh--cCcEEEEEec--cEEEecCCHHHHH
Q 010554 327 PT-------------------SNDFGSEIIPAAIM--EHDVQAYIFR--DYWEDIGTIKSFY 365 (507)
Q Consensus 327 ~~-------------------~~d~~~dil~~li~--~~~V~~~~~~--gyw~dIgt~~~y~ 365 (507)
+. .....+++++.++. ..++.++.++ +.|.|||||+||.
T Consensus 170 ~~~P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 170 RKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp TTCHHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred ccCHHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 10 12234566655553 3788888884 6799999999984
|
| >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-17 Score=174.08 Aligned_cols=204 Identities=13% Similarity=0.156 Sum_probs=136.7
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeec-CcchhhHHHHHHHHhc----CCC-EEEEEec-cCchHHHHHHHhccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQ-FNSASLNRHIARTYF 164 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~-g~ypLId~~L~~l~~~----Gi~-~I~Vv~~-~~~~~l~~~l~~~~~ 164 (507)
..++.+||||||.||||+ ...||+|+||+ |+ |||+|+++.+... |.. .++|+++ +..+.+.+++.+ +
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~-~- 163 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKK-Y- 163 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGG-G-
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHh-c-
Confidence 568899999999999998 57999999999 99 9999999999877 543 3666666 888889888864 2
Q ss_pred CCCcccCCCeEEEecCccC---------------CC--CCCCCcccChHHHHHHH--HHHHHhhhcCCCCeEEEEcCcee
Q 010554 165 GNGTNFGDGFVEVLAATQT---------------PG--ESGKNWFQGTADAVRQF--TWVFEDAKNRNIENVAILCGDHL 225 (507)
Q Consensus 165 ~~~~~~~~~~V~vl~~~q~---------------~~--~~~~~~~~Gta~AL~~~--~~~l~~~~~~~~~~~lVl~gD~i 225 (507)
..|+. .+.++ .|. .. ......+.|||++++.. ...++.......++++|++||++
T Consensus 164 ---~~fg~-~i~~f--~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDnL 237 (488)
T 2i5k_A 164 ---SANRI-RIRSF--NQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDNL 237 (488)
T ss_dssp ---CSSSC-EEEEE--CCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTBS
T ss_pred ---cccCc-eEEEE--EeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCcC
Confidence 12221 12222 121 00 00112467999999843 11122211234689999999998
Q ss_pred cc-CCHHHHHHHHHHcCCceEEEEEEcCCCCCc-cceEEEECCCCc--EEEEEeCCCccccccccccccccCCCcccccc
Q 010554 226 YR-MDYMDFIQSHVDRDADITISCAAVGESRAS-DYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (507)
Q Consensus 226 ~~-~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~-~~g~v~id~~gr--V~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~ 301 (507)
.. .|+. ++.+|..+++++++.+.+.++ +. .||++..+ +|+ |+++.|.|...... .+ +. .
T Consensus 238 ~~~~d~~-~L~~~~~~~a~~t~~v~~~~~--p~~~yG~Iv~~-dG~~~iVE~~e~~~e~~~~---~~-~~---------~ 300 (488)
T 2i5k_A 238 GATVDLK-ILNHMIETGAEYIMELTDKTR--ADVKGGTLISY-DGQVRLLEVAQVPKEHIDE---FK-NI---------R 300 (488)
T ss_dssp SCCCCHH-HHHHHHHSCCSEEEEEEECCG--GGSSSCEEEEE-TTEEEEECGGGSCTTSHHH---HT-CT---------T
T ss_pred CCcccHH-HHHHHHhcCCcEEEEEEEecC--CCCceeEEEEE-CCcEEEEEeccCCHHHHhh---cc-cc---------c
Confidence 86 5775 669999999999999887755 43 49988764 566 33333334321100 00 00 0
Q ss_pred CCceeeeEEEEEeHHHHHHHHHh
Q 010554 302 CPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 302 ~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
....+|+|+|+|+.+.|.++++.
T Consensus 301 ~~~~~Ntgi~~f~~~~L~~~l~~ 323 (488)
T 2i5k_A 301 KFTNFNTNNLWINLKAVKRLIES 323 (488)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHT
T ss_pred ccCEEEEEEEEEeHHHHHHHHhh
Confidence 12467999999999999998875
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=158.21 Aligned_cols=215 Identities=15% Similarity=0.182 Sum_probs=135.0
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.|||||+|.||||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ ++
T Consensus 3 ~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~~--------~g- 64 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAKQ--------FG- 64 (229)
T ss_dssp CEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHHH--------TT-
T ss_pred cEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHHH--------cC-
Confidence 4789999999999995 4999999999 99999999999998 699999984 4566666542 22
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i--~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
++++...+.... . ..+..++++.+...+. ..+.|++++||.- ...++.++++.|++.+++.++.+.+
T Consensus 65 --~~~~~~~~~~~~---~-~~~~~~~v~~al~~~~-----~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~ 133 (229)
T 1qwj_A 65 --AQVHRRSSETSK---D-SSTSLDAIVEFLNYHN-----EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVR 133 (229)
T ss_dssp --CEEEECCGGGSS---T-TCCHHHHHHHHHTTCT-----TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEE
T ss_pred --CEEEeChhhhcC---C-CCcHHHHHHHHHHhcC-----CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEee
Confidence 233321110000 0 1244578887765552 2478999999983 3467899999998888876666554
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
..+ +..+++ .| + +..|.+++...... ..+.......+..++|+|+|+++.| ++
T Consensus 134 ~~~--p~~~~v--~~--~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~n~giY~~~~~~l---~~------- 186 (229)
T 1qwj_A 134 RHQ--FRWSEI--QK--G-VREVTEPLNLNPAK----------RPRRQDWDGELYENGSFYFAKRHLI---EM------- 186 (229)
T ss_dssp ECC--CEECCC--CS--S-TTCCCCBSSSBTTB----------CCCTTTSCCEEEEEEEEEEEEHHHH---HT-------
T ss_pred ccC--hhHhhc--cc--c-cccccccccccccc----------ccCCCCCCceEEEeeEEEEEEHHHh---cc-------
Confidence 433 333322 22 2 11122111000000 0000000012568999999999887 11
Q ss_pred chhhhhHHhhhhcCcEEEE-Eec-cEEEecCCHHHHHHHHHHhhc
Q 010554 331 DFGSEIIPAAIMEHDVQAY-IFR-DYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 331 d~~~dil~~li~~~~V~~~-~~~-gyw~dIgt~~~y~~An~~ll~ 373 (507)
.+.....+ .+ ..+ ++|.||||++||..|+..+..
T Consensus 187 --------~~~~g~~~-~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 187 --------GYLQGGKM-AYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp --------TCSSCSSE-EEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred --------ccccCCeE-EEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 11223344 34 555 689999999999999987654
|
| >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=154.54 Aligned_cols=219 Identities=11% Similarity=0.108 Sum_probs=140.4
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
.+|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++|+|+++++.+.+.+ +. . ++
T Consensus 6 ~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~-~-------~~ 72 (236)
T 1i52_A 6 LDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LP-L-------AN 72 (236)
T ss_dssp CCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SG-G-------GG
T ss_pred CceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HH-h-------cC
Confidence 35899999999999997 4589999999999 99999999999887 89999999987655433 21 1 11
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
...+.++.. . .|..++++.++..+. ..+.++++.||+.+ . ..+..+++.|.+.++.. +.+.
T Consensus 73 ~~~v~~~~~--~---------~g~~~~i~~al~~~~-----~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~ 135 (236)
T 1i52_A 73 HPQITVVDG--G---------DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAA 135 (236)
T ss_dssp CTTEEEEEC--C---------SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEE
T ss_pred CCCEEEECC--C---------CCHHHHHHHHHHhcC-----CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEE
Confidence 112444421 1 378889988876552 24789999999843 3 45788888876655332 4344
Q ss_pred EcCCCCCccceEEEECCC-CcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 250 AVGESRASDYGLVKIDNM-GRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~-grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
+..+. +...+++ |++....+.. .-+..-+.++|+.+.|..+++.....
T Consensus 136 ~~~~~------~~~~~~~~~~i~~~~~~~-------------------------~i~~~~~p~~f~~~~l~~~~~~~~~~ 184 (236)
T 1i52_A 136 PVRDT------MKRAEPGKNAIAHTVDRN-------------------------GLWHALTPQFFPRELLHDCLTRALNE 184 (236)
T ss_dssp ECCSC------EEEECTTSSSEEEEECCT-------------------------TCEEEEEEEEEEHHHHHHHHHHHHHT
T ss_pred ecccc------EEEEcCCCCceeeccChH-------------------------hheeeeCCceecHHHHHHHHHHHHhc
Confidence 44321 1123444 4554332110 01122256788887776666542111
Q ss_pred CCchh--hhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhcc
Q 010554 329 SNDFG--SEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKE 374 (507)
Q Consensus 329 ~~d~~--~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~ 374 (507)
...+. ..++.. ...++..+..++.|.||+||+||..|+..+.++
T Consensus 185 g~~~td~~~~~~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 185 GATITDEASALEY--CGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp TCCCCSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred CCCcccHHHHHHH--cCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 11111 122222 136788888778899999999999999876543
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-17 Score=151.12 Aligned_cols=186 Identities=13% Similarity=0.165 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
++.|||||||.|+||. .||+|+|++|+ |||+|+++.+.++++++|+|+++++.+.+.+++. .++
T Consensus 5 ~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~-- 68 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVE--------LDG-- 68 (199)
T ss_dssp CEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSC--------CTT--
T ss_pred ceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhc--------cCC--
Confidence 5899999999999996 69999999999 9999999999999999999999988776655542 112
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
+.++.... +..|++++++.+...++ ...+.++++.||+.+ ..++.++++. +.++++++...
T Consensus 69 -~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~-- 131 (199)
T 2waw_A 69 -LDIVLVDD--------AGLGCSSSLKSALTWVD----PTAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY-- 131 (199)
T ss_dssp -SEEEECCC--------CCTTCCCHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE--
T ss_pred -CEEEECCC--------cccCHHHHHHHHHHhhh----ccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec--
Confidence 34443211 22589999999876662 124789999999954 5667888877 44555443221
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCc
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d 331 (507)
+ |+ +. .-++|+++.|..+.+. .....
T Consensus 132 -------------~--g~-------~~------------------------------~P~~~~~~~l~~~~~~--~~~~~ 157 (199)
T 2waw_A 132 -------------A--NG-------IG------------------------------HPFWVSRGVFGDLAEL--HGDKG 157 (199)
T ss_dssp -------------T--TE-------EE------------------------------EEEEEEGGGHHHHHTC--SSTTC
T ss_pred -------------C--Cc-------cc------------------------------CCEEEcHHHHHHHHhc--CCCHH
Confidence 1 11 00 0037788877765431 11111
Q ss_pred hhhhhHHhhhhc--CcEEEEEe-ccEEEecCCHHHHHHHHHHh
Q 010554 332 FGSEIIPAAIME--HDVQAYIF-RDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 332 ~~~dil~~li~~--~~V~~~~~-~gyw~dIgt~~~y~~An~~l 371 (507)
+..++++ .++..+.+ .++|.||+||+||..++..+
T Consensus 158 -----~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~ 195 (199)
T 2waw_A 158 -----VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASV 195 (199)
T ss_dssp -----HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHH
T ss_pred -----HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHH
Confidence 2233333 46888877 46899999999999998765
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-17 Score=151.64 Aligned_cols=185 Identities=14% Similarity=0.186 Sum_probs=124.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+|.+||||||.|+||. .||+|+|++|+ |||+|+++.+.++|+++|+|+++++.+.+.+++. .++
T Consensus 5 ~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~--------~~~-- 68 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMA--------LDG-- 68 (197)
T ss_dssp EEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSC--------CTT--
T ss_pred ceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhc--------cCC--
Confidence 5789999999999994 79999999999 9999999999999999999999988766655542 112
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
++++.... +..|++++++.+...+. ...+.++++.||+.+ ...+.++++. +.++++++...
T Consensus 69 -~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~-- 131 (197)
T 2wee_A 69 -TDVVVVED--------VERGCAASLRVALARVH----PRATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY-- 131 (197)
T ss_dssp -SEEEECC------------CCHHHHHHHHTTSC----TTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE--
T ss_pred -CEEEECCC--------cccCHHHHHHHHHHHhc----ccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec--
Confidence 34443211 23599999999876552 123689999999933 4567888876 44444432211
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCc
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSND 331 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d 331 (507)
+ |+ +.. + ++|+++.|..+.. . .+ +
T Consensus 132 -------------~--g~-------~~~-----------------------P-------~~~~~~~l~~l~~-~-~~--~ 155 (197)
T 2wee_A 132 -------------A--DG-------VGH-----------------------P-------FWFSRTVFGELAR-L-HG--D 155 (197)
T ss_dssp -------------T--TE-------EEE-----------------------E-------EEEEGGGHHHHHT-C-CS--T
T ss_pred -------------C--CC-------cCC-----------------------C-------EEECHHHHHHHHh-C-CC--C
Confidence 1 11 000 0 2778887766542 1 11 1
Q ss_pred hhhhhHHhhhhc--CcEEEEEe-ccEEEecCCHHHHHHHHHH
Q 010554 332 FGSEIIPAAIME--HDVQAYIF-RDYWEDIGTIKSFYEANMA 370 (507)
Q Consensus 332 ~~~dil~~li~~--~~V~~~~~-~gyw~dIgt~~~y~~An~~ 370 (507)
. -+..+++. .++..+.. .++|.||+||+||..++..
T Consensus 156 ~---~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~ 194 (197)
T 2wee_A 156 K---GVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLES 194 (197)
T ss_dssp T---HHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC
T ss_pred h---hHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHH
Confidence 1 12334443 46777776 4689999999999988753
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=153.23 Aligned_cols=130 Identities=21% Similarity=0.261 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.|+||.| +||+|+|++|+ |||+|+++.+.++|+++|+|+++++.+.+.+++.+.| . +. ..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~-~----~~-~~ 69 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAY-K----DY-KN 69 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHT-T----TT-TE
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhc-c----CC-CC
Confidence 6899999999999998 89999999999 9999999999999999999999999888888887533 1 11 12
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce--eccCCHHHHHHHHHH-----cCCceEEE
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH--LYRMDYMDFIQSHVD-----RDADITIS 247 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~--i~~~dl~~ll~~h~~-----~~a~~tl~ 247 (507)
+.++... ..|++++++.+...+ .+.++++.||+ +...++.++++.|.+ .+.+..+.
T Consensus 70 ~~~~~~~----------~~g~~~si~~al~~~-------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~ 132 (196)
T 3rsb_A 70 IVVIDTS----------GKGYIEDLNECIGYF-------SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAV 132 (196)
T ss_dssp EEE------------------CCCCCTTTTTC-------SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEE
T ss_pred EEEEECC----------CCCcHHHHHHHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEE
Confidence 4444211 147777887765433 47899999999 456779999999987 56666666
Q ss_pred EEEcC
Q 010554 248 CAAVG 252 (507)
Q Consensus 248 ~~~~~ 252 (507)
+.+..
T Consensus 133 ~~p~~ 137 (196)
T 3rsb_A 133 MIPKE 137 (196)
T ss_dssp EEETT
T ss_pred EEEcc
Confidence 66654
|
| >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-15 Score=142.75 Aligned_cols=214 Identities=13% Similarity=0.161 Sum_probs=136.0
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
-|.|||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++..... +. .+.. +..
T Consensus 13 ~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~---~~-~~~~----~~~ 80 (234)
T 1vpa_A 13 MNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEV---VE-KRVF----HEK 80 (234)
T ss_dssp CEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHH---HH-TTCC----CTT
T ss_pred cCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHH---HH-HHhc----cCC
Confidence 4789999999999998 3579999999999 99999999999998 999999998876433 11 2211 111
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
.+... .. + .+..++++.++..+++ ...+.++++.||. +. ...+.++++.+.+.++ .+++.+
T Consensus 81 -~~~~~--~g--g-------~~~~~sv~~al~~~~~---~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~~~ 143 (234)
T 1vpa_A 81 -VLGIV--EG--G-------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALK 143 (234)
T ss_dssp -EEEEE--EC--C-------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEE
T ss_pred -ceEEe--CC--C-------CcHHHHHHHHHHHhhh---cCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEEe
Confidence 12211 11 0 1377888888776641 0135678888998 33 4568899988876543 344444
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
..+ ++..++++| | .+.++.. .+..-.-++|+...|.++++... ...
T Consensus 144 ~~~------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~-~~~ 189 (234)
T 1vpa_A 144 NSD------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENGG-EWA 189 (234)
T ss_dssp CCS------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTCC-CCS
T ss_pred cCC------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhcC-CCC
Confidence 432 122335556 5 5544211 11112345889888877665311 011
Q ss_pred chhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 331 DFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 331 d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
+ ...++.. ...++..+..++.|.||+||+||..|+..+.+
T Consensus 190 ~-~~~~~~~--~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 229 (234)
T 1vpa_A 190 D-DTEPVQK--LGVKIALVEGDPLCFKVTFKEDLELARIIARE 229 (234)
T ss_dssp S-SHHHHHT--TTCCCEEEECCGGGCCCCSTTHHHHHHHHHHH
T ss_pred c-HHHHHHH--cCCcEEEEECCchhcCCCCHHHHHHHHHHHhc
Confidence 1 1122222 13567777767789999999999999876543
|
| >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-16 Score=149.48 Aligned_cols=204 Identities=10% Similarity=0.018 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+.|||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++. +.+ + .. . .
T Consensus 26 ~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~~---~~~-~-----~~---~---~ 83 (236)
T 2px7_A 26 VSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPPG---AEP-P-----KG---L---G 83 (236)
T ss_dssp CEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECTT---CCC-C-----TT---C---S
T ss_pred eEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCHH---HHH-h-----hc---C---C
Confidence 5699999999999984 3 9999999999 999999999 67899999999861 111 1 11 1 1
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
++++. .. .|..++++.++..++ .+.+++++||+ +.. ..+..+++.+.+.++ .+.+.+..
T Consensus 84 v~~~~--~~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~i~~~~~~ 144 (236)
T 2px7_A 84 AVFLE--GG---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSGA--AVPVLPVP 144 (236)
T ss_dssp CEEEE--CC---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHSE--EEEEEECC
T ss_pred cEEEe--CC---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcCC--eEEEEecC
Confidence 34432 11 367888888876653 46799999997 333 457889988876543 34444443
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCch
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~ 332 (507)
+ ... ..+ +|++..+.++.. ...+.. .++|+++.|.++++........+
T Consensus 145 ~--~~~----~~~-~G~v~~~~~~~~------------------------~~~~~~-~~~f~~~~l~~~~~~~~~~g~~~ 192 (236)
T 2px7_A 145 D--TLM----APE-GEAYGRVVPREA------------------------FRLVQT-PQGFFTALLREAHAYARRKGLEA 192 (236)
T ss_dssp S--EEE----EEC-SSSCEEEECGGG------------------------CEEECS-CEEEEHHHHHHHHHHHHHHTCCC
T ss_pred C--cEE----Eec-CCeEEecCChHh------------------------hccccC-CeEEcHHHHHHHHHHHHhcCCCc
Confidence 2 111 124 678776654211 012222 46788887766654321111111
Q ss_pred --hhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhc
Q 010554 333 --GSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 333 --~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~ 373 (507)
...++.. ...++..+..+++|.||+||+||..|+..+..
T Consensus 193 ~d~~~ll~~--~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~ 233 (236)
T 2px7_A 193 SDDAQLVQA--LGYPVALVEGEATAFKITHPQDLVLAEALARV 233 (236)
T ss_dssp SSHHHHHHH--TTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred hhHHHHHHH--cCCcEEEEECCccccCCCCHHHHHHHHHHHHh
Confidence 1223322 24578888888899999999999999876643
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-17 Score=168.64 Aligned_cols=102 Identities=11% Similarity=0.059 Sum_probs=61.7
Q ss_pred eEEEEcCceeccC--CHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECC--CCcEEEEEeCCCccccccccccccc
Q 010554 216 NVAILCGDHLYRM--DYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN--MGRIAQFAEKPSGANLKAMQVDTSL 291 (507)
Q Consensus 216 ~~lVl~gD~i~~~--dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~--~grV~~~~eKp~~~~~~~~~~~~~~ 291 (507)
.=|+--||++|+| ||.+++++|. +|+.. .+++..||+..+++ +++| .|.|||+....
T Consensus 12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~--------- 72 (374)
T 2iu8_A 12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH--------- 72 (374)
T ss_dssp ---------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH---------
T ss_pred cCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh---------
Confidence 4577789999998 8999999995 36553 33466799988874 4577 99999974321
Q ss_pred cCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchhhhhHHhhhhcCcEEEEEeccEEEe
Q 010554 292 LGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWED 357 (507)
Q Consensus 292 ~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~gyw~d 357 (507)
..++++|+|+|++++|..+. +| .+++| ++.+.+.++|.+..+|++
T Consensus 73 -----------~~~~~aGiyI~~~~~l~~~~--------~~-~~~~p-l~~~~~~~a~~~~~~~~~ 117 (374)
T 2iu8_A 73 -----------LKSSEAGAIIISRTQFQKYR--------DL-NKNFL-ITSESPSLVFQKCLELFI 117 (374)
T ss_dssp -----------HHTCCCSEEEEEHHHHHTST--------TS-CSCEE-EESSCHHHHHHHHHTTTS
T ss_pred -----------hhcCCcEEEEeChhHhhhcc--------cc-ccceE-EEeCCHHHHHHHHHHHhc
Confidence 14679999999999874221 12 45566 555555444444444554
|
| >1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-15 Score=157.45 Aligned_cols=210 Identities=18% Similarity=0.234 Sum_probs=141.8
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceee---cCcchhhHHHHHHHHh--------cC----CCEEEEEeccCchHHHH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCIN--------SG----INKIFVLTQFNSASLNR 157 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI---~g~ypLId~~L~~l~~--------~G----i~~I~Vv~~~~~~~l~~ 157 (507)
.+|.+||||||.||||. ...||+|+|| .|+ |+|++.++.+.. .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 67999999999999995 5799999999 799 999999999876 36 77776667777889999
Q ss_pred HHHhc-ccCCCcccCCCeEEEecCc-----cCCC-------CCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcC
Q 010554 158 HIART-YFGNGTNFGDGFVEVLAAT-----QTPG-------ESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCG 222 (507)
Q Consensus 158 ~l~~~-~~~~~~~~~~~~V~vl~~~-----q~~~-------~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~g 222 (507)
|+.+. ||+... ..|.+.... ...+ ..-...+.|||++++.+.. .+++......++|+|+++
T Consensus 177 ~f~~~~~fGl~~----~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~ 252 (505)
T 1jv1_A 177 FFTKHKYFGLKK----ENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCV 252 (505)
T ss_dssp HHHHTGGGGSCG----GGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEET
T ss_pred HHHhhhhcCCCc----CceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEEC
Confidence 98742 243210 013222100 0000 0001235799999987643 222222234689999999
Q ss_pred cee-ccCCHHHHHHHHHHcCCceEEEEEE-cCCCCCccceEEEECCCCc--EEEEEeCCCccccccccccccccCCCccc
Q 010554 223 DHL-YRMDYMDFIQSHVDRDADITISCAA-VGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQE 298 (507)
Q Consensus 223 D~i-~~~dl~~ll~~h~~~~a~~tl~~~~-~~~~~~~~~g~v~id~~gr--V~~~~eKp~~~~~~~~~~~~~~~~~~~~~ 298 (507)
|++ ...+...++.+|..+++++++.+.+ ... .+.+|++..+ +|+ |+++.|+|..... ..+ +..
T Consensus 253 Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~---~~~-------~~g 319 (505)
T 1jv1_A 253 DNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVVCRV-DGVYQVVEYSEISLATAQ---KRS-------SDG 319 (505)
T ss_dssp TBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEEEEE-TTEEEEECGGGSCHHHHH---CBC-------TTS
T ss_pred CccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceEEEE-CCeEEEEEEeeCCHHHhh---hcc-------ccc
Confidence 996 7777778999999999999999886 433 4679988775 455 4555556542211 000 000
Q ss_pred cccCCceeeeEEEEEeHHHHHHHHHh
Q 010554 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 299 ~~~~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
....+.+++|+|+|+.++|.++.+.
T Consensus 320 -~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 320 -RLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp -SBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred -ccccceeeEEEEEecHHHHHHHHHh
Confidence 0123689999999999999988763
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-14 Score=138.56 Aligned_cols=217 Identities=15% Similarity=0.135 Sum_probs=145.2
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCc-hHHHHHHHhcccCCCcccC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNS-ASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~-~~l~~~l~~~~~~~~~~~~ 171 (507)
.+.|||||||.|+||. ...||+|+|++|+ |||+|+++.+..+ .+++|+|++++.. +.+.+++..
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---------- 72 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---------- 72 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG----------
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC----------
Confidence 4789999999999997 3689999999999 9999999999987 4999999998875 344433321
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
.+.++... .+..++++.++..+.+. ...+.++++.||. +. ...+..+++.+.+ +.+..+...
T Consensus 73 --~v~~v~gg-----------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~ 136 (231)
T 3q80_A 73 --RAMIVAGG-----------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVL 136 (231)
T ss_dssp --GCEEEECC-----------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEE
T ss_pred --CeEEEcCC-----------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEE
Confidence 13343211 13468888887666420 0136789999998 33 4557888888865 245567777
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC-
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT- 328 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~- 328 (507)
++.++ +...+++|+|....+. ... ..+.+ -++|+.+.|.+.++.....
T Consensus 137 p~~dt------~~~~~~~g~v~~~~~r---~~l---------------------~~~qT-Pq~F~~~~L~~a~~~~~~~n 185 (231)
T 3q80_A 137 PLSDT------IKAVDANGVVLGTPER---AGL---------------------RAVQT-PQGFTTDLLLRSYQRGSLDL 185 (231)
T ss_dssp CCSSC------EEEECTTSBEEECCCG---GGE---------------------EEECS-CEEEEHHHHHHHHHHHTC--
T ss_pred eccCC------EEEEcCCCcEEEecch---hhe---------------------EEEcC-CcEEEHHHHHHHHHHHHhhc
Confidence 76652 1224677887765421 111 33455 4899999998887764331
Q ss_pred CCchhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 329 SNDFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 329 ~~d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
...+.+|....+. ...+|..+.-+..++.|+||+|+..|+..+
T Consensus 186 ~~~~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 186 PAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp ---CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 1122344332222 346787777666789999999999998765
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-15 Score=139.08 Aligned_cols=179 Identities=10% Similarity=0.047 Sum_probs=112.2
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
.++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++... +++ . +
T Consensus 13 ~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~-----~-----~- 71 (201)
T 2e8b_A 13 KVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSF-----L-----N- 71 (201)
T ss_dssp SCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGG-----G-----T-
T ss_pred cCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhc-----C-----C-
Confidence 35799999999999997 79999999999 9999999999988 9999999987653 111 1 1
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cC-CHHH-HHHHHHHcCCceEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RM-DYMD-FIQSHVDRDADITISCA 249 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~-dl~~-ll~~h~~~~a~~tl~~~ 249 (507)
++++.... +..|++++++.+...++ .+.+++++||+.+ +. .+.. ++ +.++++.
T Consensus 72 --~~~v~~~~--------~~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~-- 127 (201)
T 2e8b_A 72 --APVVLDEF--------EESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS-- 127 (201)
T ss_dssp --CCEEECCC--------SSCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE--
T ss_pred --ceEEecCC--------CCCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE--
Confidence 23333211 12599999999987663 4789999999944 33 2444 44 1222110
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
.+ +|+ .....|+| |+++++..+.+....+.
T Consensus 128 --------------~~-~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~g~ 157 (201)
T 2e8b_A 128 --------------VA-KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKKGD 157 (201)
T ss_dssp --------------EE-ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHTTC
T ss_pred --------------ec-CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHcCC
Confidence 00 010 13467999 99997765433211222
Q ss_pred CchhhhhHHhhhhcCcEEEEEec--cEEE--ecCCHHHHHHHHHHh
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFR--DYWE--DIGTIKSFYEANMAL 371 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~--gyw~--dIgt~~~y~~An~~l 371 (507)
. ...++++. .++..+.++ +.|. |||||+||.+++..+
T Consensus 158 ~-~~~~~l~~----~~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 158 Y-RIWALLKD----VGYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp C-CHHHHHHH----HCCEEEECCGGGGGGGCCSCCC----------
T ss_pred c-hHHHHHHH----CCeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 2 23444443 356666664 5799 999999998887543
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.1e-14 Score=131.45 Aligned_cols=111 Identities=10% Similarity=0.094 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|.++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|+++++.+.+ . . ++
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~-~-------~~ 65 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIY----Q-A-------SG 65 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHH----H-T-------TS
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHH----h-h-------cC
Confidence 346899999999999997 379999999999 999999999984 6999999998875432 1 1 11
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccC-CHHHHHHH
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQS 236 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~~-dl~~ll~~ 236 (507)
++++.... .+ ..|++++++.+...++ .+.++++.||+ +... .+..+++.
T Consensus 66 ---~~~v~~~~-~~------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 66 ---LKVIEDSL-AD------YPGPLAGMLSVMQQEA------GEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp ---CCEECCCT-TC------CCSHHHHHHHHHHHCC------SSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred ---CeEEecCC-CC------CCCHHHHHHHHHHhCC------CCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 23332211 10 1599999999887663 47899999999 4444 46777765
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=135.59 Aligned_cols=181 Identities=12% Similarity=0.172 Sum_probs=111.6
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
+.+||||||.|+||. .||+|+|++|+ |||+|+++.+..+ +|+|+++++.+.+. .++. .+
T Consensus 3 ~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~-----~~~~----~~--- 61 (197)
T 3d5n_A 3 IGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEML-----PLLM----DQ--- 61 (197)
T ss_dssp EEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHG-----GGCT----TS---
T ss_pred eEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHH-----HHhc----CC---
Confidence 789999999999997 39999999999 9999999999877 88899988754442 2222 12
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+ ++... .|..|++++++.++..+. ..+.+++++||+ +.. ..+.++++.+ +.++++++...
T Consensus 62 ~-~v~~~--------~~~~G~~~si~~al~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~--- 123 (197)
T 3d5n_A 62 I-VIYNP--------FWNEGISTSLKLGLRFFK-----DYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH--- 123 (197)
T ss_dssp C-EEECT--------TGGGCHHHHHHHHHHHTT-----TSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE---
T ss_pred E-EEECC--------CCCCCHHHHHHHHHHhhc-----cCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe---
Confidence 3 33211 123699999999987764 136899999999 434 4577888776 44555433221
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCch
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDF 332 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~ 332 (507)
+ |+ +.. + .+|+++.|..+.+ . ....+
T Consensus 124 ------------~--g~-------~~~-----------------------P-------~~~~~~~l~~l~~-l-~g~~~- 149 (197)
T 3d5n_A 124 ------------K--GE-------RGN-----------------------P-------VLISKSLFNEIEK-L-RGDVG- 149 (197)
T ss_dssp ------------T--TE-------ECS-----------------------C-------EEEEHHHHHHHHH-C-CTTCC-
T ss_pred ------------C--Cc-------ccC-----------------------C-------EEECHHHHHHHHc-c-CCCcc-
Confidence 0 10 000 1 2788888876652 2 22222
Q ss_pred hhhhHHhhhhc--CcEEEEEec--cEEEecCCHHHHHHHHHHhh
Q 010554 333 GSEIIPAAIME--HDVQAYIFR--DYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 333 ~~dil~~li~~--~~V~~~~~~--gyw~dIgt~~~y~~An~~ll 372 (507)
.. .++++ .++..+..+ +.|.||+||+||..++..+.
T Consensus 150 ~~----~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~ 189 (197)
T 3d5n_A 150 AR----VILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189 (197)
T ss_dssp TH----HHHTTSCGGGEEEEECCGGGTCCTTTC-----------
T ss_pred HH----HHHHhCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhc
Confidence 12 22333 356666664 57999999999988876543
|
| >2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=143.42 Aligned_cols=212 Identities=14% Similarity=0.115 Sum_probs=138.3
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeec-CcchhhHHHHHHHHhcCCC-----EEEEEe-ccCchHHHHHHH-h-ccc
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINSGIN-----KIFVLT-QFNSASLNRHIA-R-TYF 164 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~-g~ypLId~~L~~l~~~Gi~-----~I~Vv~-~~~~~~l~~~l~-~-~~~ 164 (507)
++.+||||||.||||+ ...||+|+||+ |+ |+|++.++.+...|.. .++|.+ .+..+.+.+|+. + .||
T Consensus 75 k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~f 150 (505)
T 2oeg_A 75 STVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPWL 150 (505)
T ss_dssp TEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHHH
T ss_pred cceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhcc
Confidence 7899999999999999 67999999999 99 9999999999987633 455555 555888889986 3 234
Q ss_pred CCC---cc-cCCCeEEEecCcc-C---C--CCCCCCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEcCceecc-CCHH
Q 010554 165 GNG---TN-FGDGFVEVLAATQ-T---P--GESGKNWFQGTADAVRQFT--WVFEDAKNRNIENVAILCGDHLYR-MDYM 231 (507)
Q Consensus 165 ~~~---~~-~~~~~V~vl~~~q-~---~--~~~~~~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~gD~i~~-~dl~ 231 (507)
+.. .. |.+..+-.+.... . . .......+.|||++++.+. ..+++....+.++++|.++|.+.. .|+
T Consensus 151 Gl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~- 229 (505)
T 2oeg_A 151 YQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK- 229 (505)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-
T ss_pred CCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-
Confidence 321 11 2111122111100 0 0 0001123579999997541 012221123568999999999884 577
Q ss_pred HHHHHHHHcCCceEEEEEEcCCCCCccceEEEEC------CCCc---------EEEEEeCCCccccccccccccccCCCc
Q 010554 232 DFIQSHVDRDADITISCAAVGESRASDYGLVKID------NMGR---------IAQFAEKPSGANLKAMQVDTSLLGFSP 296 (507)
Q Consensus 232 ~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id------~~gr---------V~~~~eKp~~~~~~~~~~~~~~~~~~~ 296 (507)
.++.+|.++++++++.+.+..... ..+|++..+ .+|+ ++++.|-|....... + +.
T Consensus 230 ~llg~~~~~~ad~~~~v~~k~~~d-~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~----~---g~-- 299 (505)
T 2oeg_A 230 RVLAYMEKEKIDFLMEVCRRTESD-KKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF----Q---DI-- 299 (505)
T ss_dssp HHHHHHHHHTCSEEEEEEECCTTC-CSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHH----H---CT--
T ss_pred HHHHHHHhcCCcEEEEEEEecCCc-cceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcc----c---Cc--
Confidence 999999999999999998876621 468888772 4577 334334443221100 0 00
Q ss_pred cccccCCceeeeEEEEEeHHHHHHHHHh
Q 010554 297 QEARKCPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 297 ~~~~~~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
....+.++....|+-+.|.++++.
T Consensus 300 ----~~f~~~Ninn~~~~l~~l~~~~~~ 323 (505)
T 2oeg_A 300 ----NKYSFFNTNNLWIRLPVLLETMQE 323 (505)
T ss_dssp ----TTTCEEEEEEEEEEHHHHHHHHHH
T ss_pred ----cccCeeEEEEEEEEHHHHHHHHhh
Confidence 012458999999999999988875
|
| >2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=137.86 Aligned_cols=217 Identities=17% Similarity=0.250 Sum_probs=142.4
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhc--------C------CCEEEEEeccCchHH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS--------G------INKIFVLTQFNSASL 155 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~--------G------i~~I~Vv~~~~~~~l 155 (507)
.++.+||||||.||||. ...||+|+||+ |+ |+|++.++.+... | |..+++.+.+..+.+
T Consensus 102 gkvavvlLaGG~GTRLg---~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRLG---SSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGGT---CSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccCC---CCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 47999999999999994 78999999999 99 9999999999886 6 888888888888989
Q ss_pred HHHHHhc-ccCCCcc----cCCCeEEEecCcc--CC---CCCCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCc
Q 010554 156 NRHIART-YFGNGTN----FGDGFVEVLAATQ--TP---GESGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGD 223 (507)
Q Consensus 156 ~~~l~~~-~~~~~~~----~~~~~V~vl~~~q--~~---~~~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~gD 223 (507)
.+|+.+. ||+.... |.+..+-.+..+. -. ...-...+.|+|+.++.... .+++....+.+.+.+.+.|
T Consensus 178 ~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~vD 257 (486)
T 2yqc_A 178 ESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVD 257 (486)
T ss_dssp HHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEETT
T ss_pred HHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECCC
Confidence 9999753 3543211 1111111111100 00 00000135799998875532 2333323467899999999
Q ss_pred eecc--CCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECC-CC--cEEEEEeCCCccccccccccccccCCCccc
Q 010554 224 HLYR--MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN-MG--RIAQFAEKPSGANLKAMQVDTSLLGFSPQE 298 (507)
Q Consensus 224 ~i~~--~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~-~g--rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~ 298 (507)
.+.- .| ..++..|..+++++++.+.+...+ ...+|++.... +| +|+++.|+|...... .+.. .+.
T Consensus 258 N~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~---~~~~----~~~- 327 (486)
T 2yqc_A 258 NCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELANK---KDPQ----DSS- 327 (486)
T ss_dssp BTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHHC---EETT----EEE-
T ss_pred CceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhhc---cccc----ccc-
Confidence 8553 45 468899999999999988876432 24678877531 45 478888887532110 0000 000
Q ss_pred cccCCceeeeEEEEEeHHHHHHHHHh
Q 010554 299 ARKCPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 299 ~~~~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
....+..|+|+|+|+.++|...++.
T Consensus 328 -~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 328 -KLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp -EESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred -cccccceeEEEEEEeHHHHHHHHHh
Confidence 0123688999999999999885554
|
| >3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-12 Score=129.98 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=143.6
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceee---cCcchhhHHHHHHHHh-------------cCCCEEEEEeccCchHHH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCIN-------------SGINKIFVLTQFNSASLN 156 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI---~g~ypLId~~L~~l~~-------------~Gi~~I~Vv~~~~~~~l~ 156 (507)
.++.+|+||||.||||. ...||+|+|| .|+ |++++.++.+.+ .+|.-+++...+..+.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 57899999999999995 5899999999 899 999999988853 578766666678888999
Q ss_pred HHHHhc-ccCCCcccCCCeEEEecCccCC--CCCC----------CCcccChHHHHHHHH--HHHHhhhcCCCCeEEEEc
Q 010554 157 RHIART-YFGNGTNFGDGFVEVLAATQTP--GESG----------KNWFQGTADAVRQFT--WVFEDAKNRNIENVAILC 221 (507)
Q Consensus 157 ~~l~~~-~~~~~~~~~~~~V~vl~~~q~~--~~~~----------~~~~~Gta~AL~~~~--~~l~~~~~~~~~~~lVl~ 221 (507)
+++.+. ||+... ..|.+.....-+ ..++ ...+.|+|+..+... ..+++....+.+.++|.+
T Consensus 110 ~~f~~~~~fGl~~----~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~n 185 (405)
T 3oc9_A 110 NYFKEHQYFGLSS----EQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHN 185 (405)
T ss_dssp HHHHHTGGGGSCT----TSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEC
T ss_pred HHHHhCcccCCCc----cceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 999753 354321 012221100000 0000 122579998887643 233333334668999999
Q ss_pred Cce-eccCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE-CCCCcEEEEEeCCCccccccccccccccCCCcccc
Q 010554 222 GDH-LYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI-DNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEA 299 (507)
Q Consensus 222 gD~-i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i-d~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~ 299 (507)
.|. +.......++.+|..+++++++-+.+...+. ...|++.. |...+|+++.|.|.. ... -..+.
T Consensus 186 vDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~d-ek~Gvl~~~dg~~~vvEysei~~e-~e~-~~~~g---------- 252 (405)
T 3oc9_A 186 VDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKE-EKVGVLVKEQERIKVVEYTELTDE-LNK-QLSNG---------- 252 (405)
T ss_dssp TTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEEETTEEEEECGGGCCTT-TTC-BCTTS----------
T ss_pred CCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCC-CccceEEEECCeeEEEEEeeCCHH-Hhh-cCCCC----------
Confidence 999 8888888999999999999999988876521 46887764 544478888887765 211 00110
Q ss_pred ccCCceeeeEEEEEeHHHHHHHH
Q 010554 300 RKCPYVASMGVYVFKKDVLFKLL 322 (507)
Q Consensus 300 ~~~~~l~~~Giyif~~~iL~~ll 322 (507)
....+..|.++++|+.++|.+++
T Consensus 253 ~l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 253 EFIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp CBSSCEEEEEEEEEEHHHHHHHT
T ss_pred ceeeccceeEeeecCHHHHHHhh
Confidence 01235788999999999998875
|
| >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.2e-13 Score=135.86 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=124.3
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHh-cCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+. .+...
T Consensus 3 ki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~-----~~~~~------ 66 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYMK-----KFTKN------ 66 (371)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHHH-----TTCSS------
T ss_pred ccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHHH-----HHhCC------
Confidence 5889999999999997 3579999999999 999999999998 58999999998 433332 22111
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee-c-cCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL-Y-RMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i-~-~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
++++. .. .|..++++.++..++ .+.++++.||.- . ...+.++++.+.+.+ .++.+.+
T Consensus 67 --v~~v~--~g---------~g~~~sv~~aL~~l~------~d~vlv~~~D~Pli~~~~i~~li~~~~~~~--a~i~~~~ 125 (371)
T 1w55_A 67 --YEFIE--GG---------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKAD--CITPALK 125 (371)
T ss_dssp --SEEEE--CC---------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGCS--EEEEEEC
T ss_pred --CEEEe--CC---------CChHHHHHHHHHhcC------CCeEEEEeCCcccCCHHHHHHHHHHHHhcC--CEEEEEE
Confidence 33331 11 377889988865542 478999999983 3 445788888776553 3444444
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeee-EEEEEeHHHHHHHHHhhCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASM-GVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Giyif~~~iL~~ll~~~~~~~ 329 (507)
+.+. +.. + .+.+... .+... .-++|+.+.|.++++... ..
T Consensus 126 ~~d~-------vk~-----v---~~t~~r~-----------------------~l~~~~~P~~f~~~~l~~~~~~~~-~~ 166 (371)
T 1w55_A 126 VADT-------TLF-----D---NEALQRE-----------------------KIKLIQTPQISKTKLLKKALDQNL-EF 166 (371)
T ss_dssp CCSC-------EEE-----T---TEEECGG-----------------------GCCEECSCEEEEHHHHHHHTSSCC-CC
T ss_pred eecC-------eee-----e---eeecCcc-----------------------ceeecCCcceecHHHHHHHHHhcc-cc
Confidence 4331 000 0 0111110 01111 125688887766554321 01
Q ss_pred CchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHH
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
.+ ...++.. ...++..+..++.|.||+||+||..|+
T Consensus 167 td-~~~ll~~--~g~~V~~v~~~~~~~dIdTpeDL~~Ae 202 (371)
T 1w55_A 167 TD-DSTAIAA--MGGKIWFVEGEENARKLTFKEDLKKLD 202 (371)
T ss_dssp SS-HHHHHHT--TTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred cC-HHHHHHh--CCCcEEEEECCccccCCCCHHHHHHHH
Confidence 11 1122221 236788888777899999999998887
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-11 Score=115.54 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|.|||||||.|+||. .||+|+|++|+ |||+|+++.+..+ +|+|++++ .+.+ +.+.+. ++
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~-~~~~~~-------~~--- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQA-EKLSSR-------YE--- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHH-HHHHTT-------SC---
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHH-HHHHHh-------cC---
Confidence 689999999999996 69999999999 9999999999876 89999874 2333 233211 22
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-eccC-CHHHHHHHHHHcCCceEE
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYRM-DYMDFIQSHVDRDADITI 246 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~~-dl~~ll~~h~~~~a~~tl 246 (507)
++++.... . -.|..++++.++..+ .+.+ ++.||+ +... .+..+++.+.+.++++++
T Consensus 60 ~~~v~d~~-~-------~~G~~~si~~gl~~~-------~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 117 (208)
T 3ngw_A 60 AEFIWDLH-K-------GVGSIAGIHAALRHF-------GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALI 117 (208)
T ss_dssp SCEECCTT-C-------CCSHHHHHHHHHHHH-------SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred CeEEecCC-C-------CCChHHHHHHHHHHc-------CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEE
Confidence 23443221 1 147889999887665 2677 999999 3343 468888877765666543
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-13 Score=132.25 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=21.8
Q ss_pred hhcCcEEEEEeccE----EEecCCHHHHHHHHHHhhc
Q 010554 341 IMEHDVQAYIFRDY----WEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 341 i~~~~V~~~~~~gy----w~dIgt~~~y~~An~~ll~ 373 (507)
....++++|...+| |.|+++ |+++|+.+++
T Consensus 36 ~~~~~~~~~~~~~~~~g~w~di~~---~l~~n~~~l~ 69 (240)
T 3r8y_A 36 PETVQAFVNKKSGVLFGEWSEIKT---ILDENSKYIV 69 (240)
T ss_dssp CTTSEEEECSSEEEEEEEHHHHHH---HHHHTTTTEE
T ss_pred CCcceEEEcCCCeEEEccHHHHHH---HHHhccceec
Confidence 34567777766666 888877 8899987764
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-12 Score=136.32 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=51.0
Q ss_pred CCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEeeeEeCCCCEECCC
Q 010554 395 PPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKD 467 (507)
Q Consensus 395 ~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~ 467 (507)
+++.++ .+.+. ++.||++|.|+ +|.|.+++| +.++.++.|. ++|+++ |.||.++.|.+|+||++|.||.+
T Consensus 278 ~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~---~~Ig~~a~I~gv~IGd~v~IG~~ 354 (496)
T 3c8v_A 278 SGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERN---CVTAHGGKIINAHLGDMIFTGFN 354 (496)
T ss_dssp TTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEES---CEECTTCEEESEEEEETCEECTT
T ss_pred CCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCC---CEECCCcEEcCceECCCcEECCC
Confidence 334444 23333 56666666665 456655555 2455555553 666888 78888888888888888888888
Q ss_pred cEEecC
Q 010554 468 VVIVNK 473 (507)
Q Consensus 468 ~~i~~~ 473 (507)
++|..+
T Consensus 355 a~I~~~ 360 (496)
T 3c8v_A 355 SFLQGS 360 (496)
T ss_dssp CEEECC
T ss_pred CEEeCC
Confidence 888765
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-10 Score=108.86 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=47.7
Q ss_pred eeecCCCcceeeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 436 SLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++++++ +.||++|.|.+ ++||++|.||.++.|.+ ..+++...+..|..+ .| +.|++++.|++|++
T Consensus 141 v~IG~~---v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV-~~-~~I~~~~~v~~g~v 206 (247)
T 1qre_A 141 VYIGNN---VSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA-IG-VTIPDGRYIPAGMV 206 (247)
T ss_dssp EEECTT---CEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE-ES-CEECTTBEECTTCE
T ss_pred eEECCC---CEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEE-CC-eEeCCCCEECCCCE
Confidence 677888 88999999998 99999999999999987 555555544444444 33 34567777776665
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7e-09 Score=106.21 Aligned_cols=40 Identities=3% Similarity=-0.127 Sum_probs=20.7
Q ss_pred EEEecCCHHHHHHHHHHhhccCCCccccCCCCCcccCCCc
Q 010554 354 YWEDIGTIKSFYEANMALTKESPAFHFYDPKTPFYTSPRF 393 (507)
Q Consensus 354 yw~dIgt~~~y~~An~~ll~~~~~~~~~~~~~~i~~~~~~ 393 (507)
.|.-+.+|...+.....++.+.+.....++...+.....+
T Consensus 78 ~~i~~~~p~~~~~~~~~~~~~~~~~~~i~p~a~I~~~a~i 117 (357)
T 4e79_A 78 NFIIVDNPYLAFAILTHVFDKKISSTGIESTARIHPSAVI 117 (357)
T ss_dssp EEEECSCHHHHHHHHHTTSSCCCCCCEECTTCEECTTCEE
T ss_pred cEEEECCHHHHHHHHHHHhccccccCeeCCCCEECCCCEE
Confidence 3566778887666555555543322344444444433333
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-08 Score=94.02 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=9.3
Q ss_pred EEEcCCCEeCCCccC
Q 010554 493 TIIMEKATIEDGMVI 507 (507)
Q Consensus 493 ~vig~~~~i~~gt~i 507 (507)
++||++++|++|+++
T Consensus 162 ~~Ig~~~~Igagsvv 176 (194)
T 3bfp_A 162 LSLADDSILGGGATL 176 (194)
T ss_dssp CEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEE
Confidence 456666666666653
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-08 Score=103.02 Aligned_cols=45 Identities=9% Similarity=0.060 Sum_probs=23.5
Q ss_pred EecCCHHHHHHHHHHhhccCC-CccccCCCCCcccCCCcCCCceec
Q 010554 356 EDIGTIKSFYEANMALTKESP-AFHFYDPKTPFYTSPRFLPPTKID 400 (507)
Q Consensus 356 ~dIgt~~~y~~An~~ll~~~~-~~~~~~~~~~i~~~~~~~~p~~i~ 400 (507)
.-+.+|...+.....++.+.+ .....++...+.....+.+.+.|+
T Consensus 74 ~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~a~i~~~a~ig~~~~I~ 119 (341)
T 3eh0_A 74 LVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIG 119 (341)
T ss_dssp EECSCHHHHHHHHHHHHCCCCCSCCSBCTTCEECTTCEECTTCEEC
T ss_pred EEeCCHHHHHHHHHHHhcccCCccCccCCCcEECCCcEECCCCEEC
Confidence 446778876666555555432 223445555555444444444443
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.5e-09 Score=102.99 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=20.3
Q ss_pred eeecCCCcceeeCCCcEEee--------eEeCCCCEECCCcEEecCCCCcc
Q 010554 436 SLLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQE 478 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n--------sIIg~na~Ig~~~~i~~~~~~~e 478 (507)
..|+++ +.|+++++|.. ++||+++.|+.++.|.+.+.+++
T Consensus 101 v~IG~~---~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~ 148 (283)
T 4eqy_A 101 LVIGDR---NTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGS 148 (283)
T ss_dssp EEECSS---CEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECS
T ss_pred EEECCC---cccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECC
Confidence 455555 55666666653 55555555554444433333333
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=104.14 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=21.5
Q ss_pred EEecCCHHHHHHHHHHhhccCCC-ccccCCCCCcccCCCcCCCc
Q 010554 355 WEDIGTIKSFYEANMALTKESPA-FHFYDPKTPFYTSPRFLPPT 397 (507)
Q Consensus 355 w~dIgt~~~y~~An~~ll~~~~~-~~~~~~~~~i~~~~~~~~p~ 397 (507)
+.-+.+|...+.....++.+.+. ...+++...+...+.+.+.+
T Consensus 95 ~l~~~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~~ 138 (372)
T 3pmo_A 95 ALVVANPYLAYASLSHLFDRKPKAAAGIHPTAIVAADAEVDPSA 138 (372)
T ss_dssp EEECSCHHHHHHHHHGGGCCCCCCCSEECTTCEECTTCEECTTC
T ss_pred EEEECCHHHHHHHHHHHhccccccccccCCCCEECCCCEECCCC
Confidence 45567787766555556554332 22444544444443333333
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=95.17 Aligned_cols=91 Identities=13% Similarity=0.342 Sum_probs=53.3
Q ss_pred ceEEcCCcEEc-cceEeee----eE---EeeccCceE-------eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEE
Q 010554 406 DAIISHGCFLR-ECTVEHS----IV---DYYQTESEI-------ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVI 470 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~S----ii---~~vg~~~~i-------~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i 470 (507)
++.||++|.|+ ++.|..+ +| +.++.++.| .+.|+++ +.||.++.|.+++||++|.||.++.|
T Consensus 51 ~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~---~~Ig~~~~i~~~~Ig~~~~Ig~~~~I 127 (191)
T 3ixc_A 51 DVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKF---VTIGHSCILHACTLGNNAFVGMGSIV 127 (191)
T ss_dssp EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTT---CEECTTCEECSCEECTTCEECTTCEE
T ss_pred CcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCC---CEECCCCEEECCEECCCCEECCCCEE
Confidence 45667777666 4555432 33 245555555 3566777 77777777777777777777777777
Q ss_pred ecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 471 VNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 471 ~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.+...+ .++..|..| ++|.++..|+++++
T Consensus 128 ~~~~~I------g~~~~Ig~g-svV~~~~~i~~~~~ 156 (191)
T 3ixc_A 128 MDRAVM------EEGSMLAAG-SLLTRGKIVKSGEL 156 (191)
T ss_dssp CTTCEE------CTTCEECTT-CEECTTCEECTTEE
T ss_pred eCCeEE------CCCCEECCC-CEECCCcCcCCCeE
Confidence 654332 233334444 44444455555543
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-08 Score=98.35 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=26.0
Q ss_pred eeeCCCcEE-eeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 445 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 445 ~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.|+.+++| .+|.||+++.|+.++.+.....+++......+..|.+| +.||+++.|+.+++
T Consensus 115 ~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~a~Vg~~s~ 176 (266)
T 3r0s_A 115 AFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQF-VKVGEGCMIAGASA 176 (266)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECSSCB
T ss_pred ceeCCcceEccccccCCCeEECCCceecCCeEECCCcEEccCCEECCC-cEECCCCEEccCCe
Confidence 333344433 23444444444444444433333333333333334444 34455555554443
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=91.95 Aligned_cols=81 Identities=17% Similarity=0.350 Sum_probs=49.5
Q ss_pred cCCCceec-ceee-eceEEcCCcEEc-cceEee----eeE---EeeccCceEe------eeecCCCcceeeCCCcEEeee
Q 010554 393 FLPPTKID-NCRI-KDAIISHGCFLR-ECTVEH----SIV---DYYQTESEIA------SLLAEGKVPIGVGRNTKIRNC 456 (507)
Q Consensus 393 ~~~p~~i~-~~~I-~~siIg~gc~I~-~~~I~~----Sii---~~vg~~~~i~------s~l~~g~~~~~Ig~~~~I~ns 456 (507)
+.+.+.+. .+.| .++.||++|.|+ ++.|.. ++| ..++.++.|. +.++++ +.||.++.|.++
T Consensus 15 ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~---~~Ig~~~~i~~~ 91 (173)
T 1xhd_A 15 IASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD---VTVGHQVILHSC 91 (173)
T ss_dssp ECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT---CEECTTCEEESC
T ss_pred ECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCC---CEECCCCEEeCC
Confidence 33344444 2444 356777777776 556554 344 2455555553 566777 677777777777
Q ss_pred EeCCCCEECCCcEEecCCCC
Q 010554 457 IIDKNVKIGKDVVIVNKDDV 476 (507)
Q Consensus 457 IIg~na~Ig~~~~i~~~~~~ 476 (507)
+||++|.||.++.|.....+
T Consensus 92 ~Ig~~~~Ig~~~~i~~~~~I 111 (173)
T 1xhd_A 92 HIKKDALIGMGSIILDGAEI 111 (173)
T ss_dssp EECTTCEECTTCEECTTCEE
T ss_pred EECCCCEEcCCCEEcCCCEE
Confidence 77777777777777654433
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.8e-08 Score=97.38 Aligned_cols=16 Identities=0% Similarity=-0.014 Sum_probs=7.5
Q ss_pred eeecCCCcceeeCCCcEEe
Q 010554 436 SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~ 454 (507)
..|+++ +.|+++++|.
T Consensus 86 ~~IG~~---~~Ig~~~~I~ 101 (265)
T 4e6u_A 86 LEIGNN---NLIREHCSLH 101 (265)
T ss_dssp EEECSS---CEECTTCEEE
T ss_pred EEECCC---eEECCceEEC
Confidence 344444 4455555553
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-08 Score=97.64 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=6.7
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
+.||+++.|+.+++
T Consensus 159 v~IG~~a~Ig~~s~ 172 (270)
T 1j2z_A 159 VRIAKGCMIAGKSA 172 (270)
T ss_dssp CEECTTCEECTTCE
T ss_pred cEeCCceEEecCcE
Confidence 34455555555443
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.9e-08 Score=96.99 Aligned_cols=46 Identities=7% Similarity=0.012 Sum_probs=17.6
Q ss_pred CCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 459 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 459 g~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
+.+++||+++.|.+...+....+++++..|..+ ++|.++++|++++
T Consensus 119 ~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~-a~V~~~v~Ig~~~ 164 (259)
T 3hsq_A 119 GHDCILGNNNILTHGAVLAGHVTLGNFAFISGL-VAVHQFCFVGDYS 164 (259)
T ss_dssp CTTCEECSSCEECTTCEECTTCEECSSCEECSS-EEECTTCEECTTC
T ss_pred CCCcEECCccEEcCCceECCccEECCCcEEeCC-CEECCCCEECCCC
Confidence 333333333333333333333333334444333 3334444444433
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-08 Score=96.13 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=20.9
Q ss_pred eeecCCCcceeeCCCcEEee--------eEeCCCCEECCCcEEecCCCCc
Q 010554 436 SLLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQ 477 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n--------sIIg~na~Ig~~~~i~~~~~~~ 477 (507)
..++++ +.|+++++|.. ++||+++.|+.++.|.+.+.++
T Consensus 84 ~~IG~~---~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig 130 (262)
T 2qia_A 84 VEIGDR---NRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVG 130 (262)
T ss_dssp EEECSS---CEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEEC
T ss_pred eEECCC---ceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEEC
Confidence 445555 56666666642 5566655555555554333333
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=94.94 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=26.8
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEE----eeeEeCCCCEECCCcEE
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKI----RNCIIDKNVKIGKDVVI 470 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I----~nsIIg~na~Ig~~~~i 470 (507)
+..||++|.|+ +|.|...+ .|+++ |.|+.++.| .+++||++|.||++|.|
T Consensus 52 ~v~IG~~~~I~~~~~I~~~v------------~IG~~---~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 52 VISIGNNVRIDDFCILSGKV------------TIGSY---SHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp GEEECSSEEECTTCEEEEEE------------EECSS---EEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred eeEECCCCEECCCCEEccce------------EECCC---CEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 45667777666 45554222 23455 555555555 23555555555555555
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=107.57 Aligned_cols=113 Identities=24% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---EeeccCceEe--eeecCCCcceeeCCCcEE----------
Q 010554 391 PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKI---------- 453 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I---------- 453 (507)
..+.+.+.|+ ++.|.+++||++|.|+ +|.|.+++| ..+|.++.|. +.++++ +.||+++.|
T Consensus 284 ~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~---~~ig~~~~i~~~~i~~~~~ 360 (456)
T 2v0h_A 284 VKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAE---THVGNFVEIKKSTVGKGSK 360 (456)
T ss_dssp EEECTTCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTT---CEEEEEEEEESCEECTTCE
T ss_pred cEECCCCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCC---CEECCCCEEeccEECCCCE
Confidence 3344455554 4777788888888887 677777766 2445555442 444444 444444433
Q ss_pred -------eeeEeCCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 454 -------RNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 454 -------~nsIIg~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
.++.||+||.||.+++|.+.+ .+++...+..+..|.+| +.||++++|++|+++
T Consensus 361 i~~~~~~~~~~Ig~~v~Ig~~~~i~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~-v~Ig~~~~ig~~s~v 427 (456)
T 2v0h_A 361 VNHLTYVGDSEIGSNCNIGAGVITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VKVANGATIGAGTTI 427 (456)
T ss_dssp EEEEEEEESEEECTTCEECTTCEEEECSSSSCCCEEECSSCEECTTCEEEES-EEECTTCEECTTCEE
T ss_pred eccceeecCcEECCCcEECCceEEeccccccCCCcEECCCCEECCCCEEcCC-cEECCCCEECCCCEE
Confidence 335778888888888877632 33444444444444444 556777777776653
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-08 Score=90.51 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=56.0
Q ss_pred ceEEcCCcEEc-cceEee----eeE---EeeccCceEe------eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEe
Q 010554 406 DAIISHGCFLR-ECTVEH----SIV---DYYQTESEIA------SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~----Sii---~~vg~~~~i~------s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~ 471 (507)
++.||++|.|+ ++.|.. ++| ..++.++.|. +.++++ +.|++++.|.+++||+++.||.++.|.
T Consensus 28 ~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~---~~I~~~~~i~~~~Ig~~~~Ig~~~~i~ 104 (173)
T 1v3w_A 28 DVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEY---VTIGHNAMVHGAKVGNYVIIGISSVIL 104 (173)
T ss_dssp EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSS---CEECTTCEEESCEECSSEEECTTCEEC
T ss_pred CEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCC---CEECCCCEECCCEECCCCEECCCCEEe
Confidence 45556666665 444443 333 2455666653 667888 788888999889999999999888887
Q ss_pred cCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 472 NKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 472 ~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+...+++. ..|..| ++|.++..|+++++
T Consensus 105 ~~~~Ig~~------~~Ig~~-s~V~~~~~i~~~~~ 132 (173)
T 1v3w_A 105 DGAKIGDH------VIIGAG-AVVPPNKEIPDYSL 132 (173)
T ss_dssp TTCEECSS------EEECTT-CEECTTCEECTTEE
T ss_pred CCCEECCC------CEECCC-CEECCCcEeCCCcE
Confidence 75444433 334334 33444444444443
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.6e-08 Score=92.61 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=43.4
Q ss_pred eeecCCCcceeeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+.|+++ +.|+.++.|.. ++||++|.||.+++|.+ ..+++...+..+..+ .+ ++|++++.|++|+++
T Consensus 112 ~~IG~~---v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V-~~-~~i~~~~~v~~~~vv 178 (213)
T 3kwd_A 112 VWIGDN---VSITHMALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI-QD-VEIPPGKYVPSGMVI 178 (213)
T ss_dssp EEECTT---CEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE-ES-CEECTTBEECTTCEE
T ss_pred eEECCC---cEECCCcEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE-CC-cEeCCCCEECCCcEE
Confidence 456666 67777777776 77777777777777765 445555544444444 23 456778888877764
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.5e-08 Score=96.89 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=29.5
Q ss_pred eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCC
Q 010554 436 SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEK 498 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~ 498 (507)
+.++++ +.||.++.|+ +|.|++++.|+.++.|.+...+++......+..|..+ ++|+++
T Consensus 89 ~~Ig~~---~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~-~~ig~~ 148 (273)
T 3fs8_A 89 TIIGDN---FQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEK-SIIKDF 148 (273)
T ss_dssp CEECTT---CEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTT-CEECTT
T ss_pred CEECCC---CEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCC-ceeCCc
Confidence 445555 4555555553 5666666666555555544444444444444444333 344443
|
| >4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.7e-08 Score=96.78 Aligned_cols=67 Identities=7% Similarity=0.053 Sum_probs=43.6
Q ss_pred eeecCCCcceeeCCCcEE-eeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 436 SLLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.++++ +.|+.+++| .+|+||+++.|+.++.+.....+++......+..|.+| +.||+++.|+.+++
T Consensus 126 ~~IG~~---~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~~vvg~~s~ 193 (283)
T 4eqy_A 126 TTLGDD---NWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQY-VRIGAHSMLGGASA 193 (283)
T ss_dssp EEECSS---CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred eEECCC---cEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCC-eEECCCcEECCCCe
Confidence 455555 566666666 56777777777777777666666666655566666666 55677777766664
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.8e-08 Score=91.02 Aligned_cols=61 Identities=20% Similarity=0.485 Sum_probs=39.3
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.++++ +.||.++.|.+++||++|.||.++.|.....+ .++..|..| ++|.++..|+++++
T Consensus 84 ~~Ig~~---~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~I------g~~~~Ig~~-s~V~~~~~i~~~~v 144 (187)
T 3r3r_A 84 LIIGED---VTVGHKVMLHGCTIGNRVLVGMGSIVLDGAII------EDDVMIGAG-SLVPQHKRLESGYL 144 (187)
T ss_dssp EEECSS---CEECTTCEEESCEECSSEEECTTCEECTTCEE------CSSEEECTT-CEECTTCEECTTEE
T ss_pred eEECCC---CEECCCCEEeCcEECCCCEECCCCEECCCCEE------CCCCEECCC-CEECCCcCcCCCcE
Confidence 667777 78888888888888888888888888654332 233344444 44444445555543
|
| >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.3e-08 Score=105.73 Aligned_cols=67 Identities=28% Similarity=0.341 Sum_probs=52.4
Q ss_pred eeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 402 CRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 402 ~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.|. ++.||++|+|+ ++.|.+++| +.++ ++.+. +.++++ +.||++++|+ +|+||++++||+++.|.+
T Consensus 287 ~~i~~~~~ig~~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~---~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 360 (468)
T 1hm9_A 287 VILKGQTKIGAETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADG---VTVGPYAHIRPNSSLGAQVHIGNFVEVKG 360 (468)
T ss_dssp CEEESSCEECTTCEECTTCEEESCEECTTCEEC-SCEEESCEECTT---CEECSSCEECSSCEECTTCEEEEEEEEES
T ss_pred cEECCCCEECCCCEECCCCEEeccEEeCCcEEE-EEEEeccccCCC---cEECCceEEecCcEECCccEECCCcEEee
Confidence 4443 67888888887 678888777 3566 66674 888888 8899999998 899999988888777654
|
| >3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7e-08 Score=94.74 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=30.0
Q ss_pred eeccCceEe--eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCcc
Q 010554 427 YYQTESEIA--SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQE 478 (507)
Q Consensus 427 ~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e 478 (507)
.+|..+.|. +.++++ +.|+.++.|. +++||+++.|+.++.|...+.+++
T Consensus 96 ~Ig~~~~I~~~~~Ig~~---~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~ 147 (273)
T 3fs8_A 96 QTGHKVTIRENTKIGNN---VKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKD 147 (273)
T ss_dssp EECSSCEECSSCEECSS---CEECTTCEECSSCEECSSCEECTTCEECTTCEECT
T ss_pred EECCceEECCCCEECCC---CEECccceeCCceEECCceEECCCCEECCCceeCC
Confidence 344555552 556666 5666666664 677777777777777765554444
|
| >4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.9e-08 Score=94.54 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=61.2
Q ss_pred ceEEcCCcEEc-cceE-------------eeeeE---EeeccCceEe---------eeecCCCcceeeCCCcEE-eeeEe
Q 010554 406 DAIISHGCFLR-ECTV-------------EHSIV---DYYQTESEIA---------SLLAEGKVPIGVGRNTKI-RNCII 458 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I-------------~~Sii---~~vg~~~~i~---------s~l~~g~~~~~Ig~~~~I-~nsII 458 (507)
++.||++|.|. ++.| .+++| ..++.++.|. +.++++ +.|+.+++| .+|+|
T Consensus 55 ~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~---~~I~~~~~I~~~~~I 131 (265)
T 4e6u_A 55 FTRIGQNNEIFQFASVGEVCQDLKYKGEETWLEIGNNNLIREHCSLHRGTVQDNALTKIGSH---NLLMVNTHIAHDCIV 131 (265)
T ss_dssp SEEECSSCEECTTCEEEECCCCTTCCSCCCEEEECSSCEECTTCEEECCCTTTTSEEEECSS---CEECTTCEECTTCEE
T ss_pred CcEECCCCEEcCCcEECCccccccccCCCCeEEECCCeEECCceEECcccccCCCceEEccC---cEEeeeeEEcccEEE
Confidence 35666666665 4555 24444 2455566553 556666 666777777 56777
Q ss_pred CCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 459 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 459 g~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
|+++.|+.++.|.....+++......+..|.+| +.||+++.|++|++
T Consensus 132 g~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~~~i~~~sv 178 (265)
T 4e6u_A 132 GDHNIFANNVGVAGHVHIGDHVIVGGNSGIHQF-CKIDSYSMIGGASL 178 (265)
T ss_dssp CSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred CCCcEEcCCcEECCCcEECCCeEEcCCCEECCC-cEECCCCEEcCCCE
Confidence 777777777777766666666655666666666 56677777776665
|
| >3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-06 Score=91.19 Aligned_cols=260 Identities=10% Similarity=0.103 Sum_probs=143.5
Q ss_pred CCCCCceEEEEEcCCCCCcccCCccCCCccceeec-CcchhhHHHHHHHHhc----CCC-EEEEEecc-CchHHHHHHHh
Q 010554 89 RVDPKNVAAIILGGGAGTKLFPLTLRAATPAVPVA-GCYRLIDIPMSNCINS----GIN-KIFVLTQF-NSASLNRHIAR 161 (507)
Q Consensus 89 ~~~~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~-g~ypLId~~L~~l~~~----Gi~-~I~Vv~~~-~~~~l~~~l~~ 161 (507)
+....++.+|+||||.||||. ...||.++||. |+ +++++.++.+... |.. ..+|.+++ ..+...+++.+
T Consensus 122 ~~~l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k 197 (528)
T 3r3i_A 122 SSVLNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQK 197 (528)
T ss_dssp CTTCTTEEEEEECCCBCTTTT---CSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGG
T ss_pred hhhcCceEEEEeCCCCccccC---CCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHh
Confidence 345678999999999999996 57899999997 77 9999999998765 422 34666654 45666666643
Q ss_pred cc-cCCCcc-cCCCeEEEecC-ccCCC--------CCCC-CcccChHHHHHHH--HHHHHhhhcCCCCeEEEEcCceec-
Q 010554 162 TY-FGNGTN-FGDGFVEVLAA-TQTPG--------ESGK-NWFQGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLY- 226 (507)
Q Consensus 162 ~~-~~~~~~-~~~~~V~vl~~-~q~~~--------~~~~-~~~~Gta~AL~~~--~~~l~~~~~~~~~~~lVl~gD~i~- 226 (507)
.. |+.... |.+..+-.+.. ..-+- .... -.|-|.||-.+.. ...+++....+.+.+.+.+.|.+.
T Consensus 198 ~~~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga 277 (528)
T 3r3i_A 198 YNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGA 277 (528)
T ss_dssp GTTSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTC
T ss_pred cCccCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCccc
Confidence 21 321100 11110000000 00000 0001 1245777644432 223444444678999999999965
Q ss_pred cCCHHHHHHHHHHc----CCceEEEEEEcCCCCCccceEEEECCCCc--EEEEEeCCCccccccccccccccCCCccccc
Q 010554 227 RMDYMDFIQSHVDR----DADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEAR 300 (507)
Q Consensus 227 ~~dl~~ll~~h~~~----~a~~tl~~~~~~~~~~~~~g~v~id~~gr--V~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~ 300 (507)
..|. .++..+..+ ++++.+-+.+...+. ..-|++.. .+|+ ++++.|-|+..... .+. .
T Consensus 278 ~vDp-~~Lg~~~~~~~~~~~d~~~kVv~Kt~~d-ek~Gvl~~-~dGk~~vvEyseip~e~~~~----~~g---------~ 341 (528)
T 3r3i_A 278 TVDL-YILNHLMNPPNGKRCEFVMEVTNKTRAD-VKGGTLTQ-YEGKLRLVEIAQVPKAHVDE----FKS---------V 341 (528)
T ss_dssp CCCH-HHHHHHSSCSSSCCCSEEEEECCCCTTC-CSSCEEEC-SSSSCEEECTTSSCGGGTTT----SSC---------S
T ss_pred ccCH-HHHHHHHhcccccCCcEEEEEeEccccC-CcccEEEE-ECCeEEEEEecCCChhHhhc----cCC---------c
Confidence 4554 466777776 788776655433221 23455543 3454 44554444322110 000 0
Q ss_pred cCCceeeeEEEEEeHHHHHHHHHhhCCCC------------------CchhhhhHHhhhhcCcEEEEEec-cEEEecCCH
Q 010554 301 KCPYVASMGVYVFKKDVLFKLLRWRYPTS------------------NDFGSEIIPAAIMEHDVQAYIFR-DYWEDIGTI 361 (507)
Q Consensus 301 ~~~~l~~~Giyif~~~iL~~ll~~~~~~~------------------~d~~~dil~~li~~~~V~~~~~~-gyw~dIgt~ 361 (507)
....+.|+....|+-+.|.++++...... +.+..++++.. .+..++.+. ..+.-+-+.
T Consensus 342 ~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f---~~~~~i~VpR~rF~PvKn~ 418 (528)
T 3r3i_A 342 SKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF---ENSLGINVPRSRFLPVKTT 418 (528)
T ss_dssp SSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS---SSCCCEECCGGGCCBCCSH
T ss_pred ccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc---cCcEEEEEehHHcccccch
Confidence 12246899999999999999887531110 00111112111 223334443 237778888
Q ss_pred HHHHHHHHHh
Q 010554 362 KSFYEANMAL 371 (507)
Q Consensus 362 ~~y~~An~~l 371 (507)
.|++...-++
T Consensus 419 sdLll~~Sdl 428 (528)
T 3r3i_A 419 SDLLLVMSNL 428 (528)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHhcce
Confidence 9988776554
|
| >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-08 Score=106.35 Aligned_cols=54 Identities=24% Similarity=0.506 Sum_probs=41.9
Q ss_pred CceE-eeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 431 ESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 431 ~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
++.| +++|+++ |.||+||.|.+|+|+++|.||.|+.|.+ ++||++++|++|++|
T Consensus 335 ~~~i~~~~ig~~---~~I~~~~~i~~~~i~~~~~i~~~~~i~~--------------------~~ig~~~~i~~~~~i 389 (420)
T 3brk_X 335 GAALNRSLLFTG---VRANSYSRLENAVVLPSVKIGRHAQLSN--------------------VVIDHGVVIPEGLIV 389 (420)
T ss_dssp SCEEESCEECTT---CEECTTCEEEEEEECTTCEECTTCEEEE--------------------EEECTTCEECTTCEE
T ss_pred CCEEeCcEEcCC---CEECCCCEEcceEEcCCCEECCCCEEec--------------------eEECCCCEECCCCEE
Confidence 3444 3888998 8899999999999999999999999976 556666666666553
|
| >3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0 | Back alignment and structure |
|---|
Probab=98.69 E-value=8.4e-08 Score=94.09 Aligned_cols=66 Identities=8% Similarity=-0.065 Sum_probs=34.5
Q ss_pred eeecCCCcceeeCCCcEEee--------eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 436 SLLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n--------sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
..|+++ +.|+++++|.. ++||+++.|+.++.|.+.+.+++......+..+.++ ++||+++.|+.++
T Consensus 84 v~IG~~---~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~-v~Igd~~~Ig~~a 157 (266)
T 3r0s_A 84 VVIGKN---ATIREFATINSGTAKGDGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGH-VELGDFTVVGGLT 157 (266)
T ss_dssp EEECTT---CEECTTCEEECCCTTTTSEEEECTTCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTC
T ss_pred EEECCC---CEECCceEecCCcccCCccEEECCCceeCCcceEccccccCCCeEECCCceecCC-eEECCCcEEccCC
Confidence 555666 66677766653 666666666666655544444444444444444333 3344444444433
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.2e-08 Score=90.22 Aligned_cols=91 Identities=18% Similarity=0.365 Sum_probs=57.1
Q ss_pred ceEEcCCcEEc-cceEee----eeE---EeeccCceEe-e------------eecCCCcceeeCCCcEEeeeEeCCCCEE
Q 010554 406 DAIISHGCFLR-ECTVEH----SIV---DYYQTESEIA-S------------LLAEGKVPIGVGRNTKIRNCIIDKNVKI 464 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~----Sii---~~vg~~~~i~-s------------~l~~g~~~~~Ig~~~~I~nsIIg~na~I 464 (507)
++.||++|.|+ ++.|.. ..| +.++.++.|. + .++++ +.||.++.|.+++||++|.|
T Consensus 37 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~---~~Ig~~~~i~~~~Ig~~~~I 113 (189)
T 3r1w_A 37 DVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDD---VTIGHQAMLHGCTIGNRVLI 113 (189)
T ss_dssp EEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSS---EEECTTCEEESCEECSSEEE
T ss_pred eeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCC---CEECCCCEEeCcEECCCcEE
Confidence 45566666665 455532 133 2455666553 2 77888 88999999999999999999
Q ss_pred CCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 465 GKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 465 g~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
|.++.|.....++ ++..|..| ++|.++..|+++++
T Consensus 114 g~~~~i~~~v~Ig------~~~~Ig~~-s~V~~g~~i~~~~v 148 (189)
T 3r1w_A 114 GMKSMIMDGAIVE------DEVIVAAG-ATVSPGKVLESGFV 148 (189)
T ss_dssp CTTCEECTTCEEC------SSCEECTT-CEECTTCEECTTEE
T ss_pred CCCCEEcCCCEEC------CCCEEccC-CEECCCCEeCCCCE
Confidence 9998887644333 33444444 44555555555554
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.7e-08 Score=95.55 Aligned_cols=13 Identities=38% Similarity=0.189 Sum_probs=6.1
Q ss_pred EEcCCCEeCCCcc
Q 010554 494 IIMEKATIEDGMV 506 (507)
Q Consensus 494 vig~~~~i~~gt~ 506 (507)
.||+++.|++|++
T Consensus 188 ~IG~~a~ig~gs~ 200 (305)
T 3t57_A 188 HIGSFAFIGGGSV 200 (305)
T ss_dssp EECTTCEECTTCE
T ss_pred EECCCCEEcCCCe
Confidence 3444444444443
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.2e-08 Score=89.21 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=7.6
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
++||++++|++|++
T Consensus 121 ~~Ig~~~~Igagsv 134 (192)
T 3mqg_A 121 ATIGRYAFVGAGAV 134 (192)
T ss_dssp CEECTTCEECTTCE
T ss_pred CEECCCCEEcCCCE
Confidence 44555555555554
|
| >3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-08 Score=94.61 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=45.2
Q ss_pred cccCCCCCcccCCCcCCCceec-ceee-eceEEcCCcEEc-cceEeeeeEEeeccCceE--eeeecCCCcceeeCCCcEE
Q 010554 379 HFYDPKTPFYTSPRFLPPTKID-NCRI-KDAIISHGCFLR-ECTVEHSIVDYYQTESEI--ASLLAEGKVPIGVGRNTKI 453 (507)
Q Consensus 379 ~~~~~~~~i~~~~~~~~p~~i~-~~~I-~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i--~s~l~~g~~~~~Ig~~~~I 453 (507)
.+..+...+...+.+.++++|+ +|.| .+++|+.+|.|+ +|.|. .++.| .+.++++ |.||+++.|
T Consensus 86 ~~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~--------~~~~I~~~~~IG~~---~~I~~~~~i 154 (240)
T 3r8y_A 86 DLKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMID--------MNAVLGGRATVGKN---CHVGAGAVL 154 (240)
T ss_dssp CCTTCSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEEC--------TTCEECTTCEECTT---CEECTTCEE
T ss_pred hccCCCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEEC--------CCCEECCCCEECCC---cEECCCcEE
Confidence 3334445555555555555554 3444 234444444443 23332 12222 1445677 677777777
Q ss_pred ee---------eEeCCCCEECCCcEEecC
Q 010554 454 RN---------CIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 454 ~n---------sIIg~na~Ig~~~~i~~~ 473 (507)
.+ ++||++|.||.+++|...
T Consensus 155 ~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~ 183 (240)
T 3r8y_A 155 AGVIEPPSAKPVIVEDDVVIGANVVVLEG 183 (240)
T ss_dssp CCCCSCTTSCCCEECTTCEECTTCEECTT
T ss_pred CCCccCCCCCCcEECCCCEECCCCEECCC
Confidence 66 777777777777777543
|
| >1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A | Back alignment and structure |
|---|
Probab=98.66 E-value=7.1e-08 Score=88.23 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=7.1
Q ss_pred eEEcCCcEEc-cceEe
Q 010554 407 AIISHGCFLR-ECTVE 421 (507)
Q Consensus 407 siIg~gc~I~-~~~I~ 421 (507)
+.||++|.|+ +|.|.
T Consensus 52 v~IG~~~~I~~~~~I~ 67 (173)
T 1xhd_A 52 TIIGDRVNVQDQCTLH 67 (173)
T ss_dssp EEECTTCEECTTCEEE
T ss_pred EEECCCCEECCCCEEE
Confidence 4455555554 34444
|
| >1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=93.55 Aligned_cols=24 Identities=21% Similarity=0.014 Sum_probs=11.4
Q ss_pred CCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 482 PELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 482 ~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++++..|..+ ++|.++++|+++++
T Consensus 143 Igd~~~Ig~~-a~V~~~v~IG~~a~ 166 (270)
T 1j2z_A 143 IGDYVNIGGL-TAIHQFVRIAKGCM 166 (270)
T ss_dssp ECSSCEECTT-CEECTTCEECTTCE
T ss_pred ECCCeEEecC-CEECCCcEeCCceE
Confidence 3334444333 44455555555554
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=95.71 Aligned_cols=79 Identities=19% Similarity=0.210 Sum_probs=46.5
Q ss_pred CCcCCCceec-ceeeeceEEcCCcEEc-cceEeeeeE---Ee----------------------------eccCceEe-e
Q 010554 391 PRFLPPTKID-NCRIKDAIISHGCFLR-ECTVEHSIV---DY----------------------------YQTESEIA-S 436 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~~siIg~gc~I~-~~~I~~Sii---~~----------------------------vg~~~~i~-s 436 (507)
+.+.+.+.|+ +|.|.+|+|+++|.|+ ++.|++|+| .. ++.+++|. +
T Consensus 84 ~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~~~g~~I~~~a~I~~s 163 (334)
T 2pig_A 84 CTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEHAQILQIYDRATVNHS 163 (334)
T ss_dssp CEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------CCCEEECTTCEEESC
T ss_pred eeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeecccCCCeEECCCCEEecc
Confidence 3333444444 4777788888888888 678888876 12 33333442 4
Q ss_pred eecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 437 LLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
++.++ |.|+.+++|.+|+|+.++.|++++.+..
T Consensus 164 ~I~~g---~~I~~~a~I~~svI~~~a~I~~~a~V~~ 196 (334)
T 2pig_A 164 RIVHQ---VQLYGNATITHAFIEHRAEVFDFALIEG 196 (334)
T ss_dssp EEETT---CEECTTCEEESEEECTTCEECTTCEEEC
T ss_pred EEcCC---CEEcCCeEEeCcEEcCCCEECCCcEECC
Confidence 55555 5555555555555555555555555543
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-08 Score=100.70 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=10.6
Q ss_pred hhhhHHhhhhc-CcEEEEEeccEE
Q 010554 333 GSEIIPAAIME-HDVQAYIFRDYW 355 (507)
Q Consensus 333 ~~dil~~li~~-~~V~~~~~~gyw 355 (507)
+.++|..+-+. .++..+ .++-|
T Consensus 73 ~~~~~~~l~~~~~rva~~-~~~~~ 95 (316)
T 3tk8_A 73 VAHAIEQLDRGALRVAEK-IDGAW 95 (316)
T ss_dssp HHHHHHHHHTTSSCSEEE-ETTEE
T ss_pred HHHHHHHHHhCCCEEeee-ccchH
Confidence 34555433332 566666 34444
|
| >3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.9e-08 Score=89.45 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=51.0
Q ss_pred eccCceEe-----eeecCCCcceeeCCCcEEe------eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEc
Q 010554 428 YQTESEIA-----SLLAEGKVPIGVGRNTKIR------NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIM 496 (507)
Q Consensus 428 vg~~~~i~-----s~l~~g~~~~~Ig~~~~I~------nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig 496 (507)
++.++.|. ..|+++ +.|++++.|. +++||+++.||.++.|.+ ..+++......+..|.+| ++||
T Consensus 60 I~~~~~I~~~~~~i~IG~~---~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~-~~Ig~~~~Ig~~~~I~~~-~~Ig 134 (191)
T 3ixc_A 60 IWYGTVLRGDVDKIEVGEG---TNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHA-CTLGNNAFVGMGSIVMDR-AVME 134 (191)
T ss_dssp ECTTCEEEEEEEEEEECTT---CEECTTCEECC----CCEEECTTCEECTTCEECS-CEECTTCEECTTCEECTT-CEEC
T ss_pred ECCCCEEecCCCCeEECCC---CEECCCCEEeecCCcCCeEECCCCEECCCCEEEC-CEECCCCEECCCCEEeCC-eEEC
Confidence 35555553 267777 7788888887 788888888888887765 456666666666666666 5667
Q ss_pred CCCEeCCCccC
Q 010554 497 EKATIEDGMVI 507 (507)
Q Consensus 497 ~~~~i~~gt~i 507 (507)
+++.|++|++|
T Consensus 135 ~~~~Ig~gsvV 145 (191)
T 3ixc_A 135 EGSMLAAGSLL 145 (191)
T ss_dssp TTCEECTTCEE
T ss_pred CCCEECCCCEE
Confidence 77777666653
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-08 Score=97.39 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=9.2
Q ss_pred eEeCCCCEECCCcEEecC
Q 010554 456 CIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~~ 473 (507)
++||+||.||.+++|..+
T Consensus 178 v~IGd~v~IG~~a~I~~g 195 (276)
T 3gos_A 178 TIIEDNCFVGARSEVVEG 195 (276)
T ss_dssp CEECTTCEECTTCEECTT
T ss_pred eEECCCCEECCCCEECCC
Confidence 445555555555555443
|
| >3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.8e-08 Score=101.56 Aligned_cols=226 Identities=10% Similarity=0.045 Sum_probs=130.5
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCeEEEEc----CceeccCCHHHHHHHHHHc--C---------CceEEEEEEcCCCCCc
Q 010554 193 QGTADAVRQFTWVFEDAKNRNIENVAILC----GDHLYRMDYMDFIQSHVDR--D---------ADITISCAAVGESRAS 257 (507)
Q Consensus 193 ~Gta~AL~~~~~~l~~~~~~~~~~~lVl~----gD~i~~~dl~~ll~~h~~~--~---------a~~tl~~~~~~~~~~~ 257 (507)
++++.+++.+.+.+ .+++|++ +|....+++.+++..|+++ + +..|+.+..+.+.-.+
T Consensus 124 L~~a~~i~~~d~~~--------~~t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti~L~~l~d~li~ 195 (496)
T 3c8v_A 124 LHDDEVITIKDSFL--------NKTLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATVDLSTIHNSVVR 195 (496)
T ss_dssp CSSCCEEEEESCEE--------ESCEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEEESCEEESCEEC
T ss_pred hhHhhhHHhhhhcC--------CceEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEecccceeeHHHHHHHHHH
Confidence 57777765432110 1237777 5777777766666777752 2 2344544445443224
Q ss_pred cceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchhhhhH
Q 010554 258 DYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSEII 337 (507)
Q Consensus 258 ~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~~dil 337 (507)
.|+.+. .|++..+.++|...-. .++.....+|.|.++.|..++.+.... .
T Consensus 196 ~~~~~~---~g~i~~~~~~pg~~~i-------------------~~~~~lnf~Y~f~~~~L~~~l~~~~~~-n------- 245 (496)
T 3c8v_A 196 YFSYVQ---TGELVGKCVEPGQIWI-------------------KSGDELEFHYSFDKAILDKYISQEAGS-C------- 245 (496)
T ss_dssp TTCEEE---SSEEESCEECTTEEEE-------------------ECTTSEEEEEECCHHHHTTTCBCCTTS-C-------
T ss_pred HHhhhc---CCceEEeeecCCceec-------------------ccccccceEEEcCHHHHHHHHhhccCc-c-------
Confidence 566652 4667776666652100 012234569999998876543221110 0
Q ss_pred HhhhhcCcEEEEEeccEEEec--CCHHHHHHHHHHhhcc-C---CCccccCCCCCcccCCCcCCCceec-ceeeeceEEc
Q 010554 338 PAAIMEHDVQAYIFRDYWEDI--GTIKSFYEANMALTKE-S---PAFHFYDPKTPFYTSPRFLPPTKID-NCRIKDAIIS 410 (507)
Q Consensus 338 ~~li~~~~V~~~~~~gyw~dI--gt~~~y~~An~~ll~~-~---~~~~~~~~~~~i~~~~~~~~p~~i~-~~~I~~siIg 410 (507)
..++|.|+ ..++++.++....... . ..-.++++...+.....+.+.+.|. +|.|.+++||
T Consensus 246 -------------~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG 312 (496)
T 3c8v_A 246 -------------PTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMG 312 (496)
T ss_dssp -------------CBSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEEC
T ss_pred -------------ccceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEec
Confidence 01222222 2334444432211100 0 1112334444333344555566665 4777889999
Q ss_pred CCcEEc-cceEeeeeEE---eeccCceEe-eeecCCCcceeeCCCcEEeee-----EeCCCCEECCCcEEec
Q 010554 411 HGCFLR-ECTVEHSIVD---YYQTESEIA-SLLAEGKVPIGVGRNTKIRNC-----IIDKNVKIGKDVVIVN 472 (507)
Q Consensus 411 ~gc~I~-~~~I~~Sii~---~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~ns-----IIg~na~Ig~~~~i~~ 472 (507)
++|.|+ +|.|.+|+|+ .+|.++.+. +.|+++ |.||.+|.|..+ +||++|.||.++++..
T Consensus 313 ~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd~---v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~ 381 (496)
T 3c8v_A 313 KGSNAQENCYIINSRLERNCVTAHGGKIINAHLGDM---IFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDL 381 (496)
T ss_dssp TTCEECTTCEEEEEEEEESCEECTTCEEESEEEEET---CEECTTCEEECCSSSCEEECTTCEECTTCEEEC
T ss_pred CCCEECCCceEeceEeCCCCEECCCcEEcCceECCC---cEECCCCEEeCCCCcceEECCCCEECCCCEEec
Confidence 999998 7899999883 678888885 889998 889999999876 7888888888887763
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.8e-07 Score=87.53 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=11.0
Q ss_pred EEecCCHHHHHHHHHHhhc
Q 010554 355 WEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 355 w~dIgt~~~y~~An~~ll~ 373 (507)
+.-|++++...+....+.+
T Consensus 75 ~iAIg~~~~R~~i~~~l~~ 93 (220)
T 4ea9_A 75 FVAIGDNRLRQKLGRKARD 93 (220)
T ss_dssp EECCCCHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHh
Confidence 3446776666555555554
|
| >3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-07 Score=87.24 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=17.5
Q ss_pred eccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 428 YQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 428 vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
++.++.|. +.|+++ |.||.++.|. ++.||++|.||.++++.
T Consensus 96 Ig~~~~i~~~~Ig~~---~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~ 138 (189)
T 3r1w_A 96 IGHQAMLHGCTIGNR---VLIGMKSMIMDGAIVEDEVIVAAGATVS 138 (189)
T ss_dssp ECTTCEEESCEECSS---EEECTTCEECTTCEECSSCEECTTCEEC
T ss_pred ECCCCEEeCcEECCC---cEECCCCEEcCCCEECCCCEEccCCEEC
Confidence 34444442 444444 4444444442 34444444444444443
|
| >2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-07 Score=90.53 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=34.4
Q ss_pred eeeCCCcEE-eeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 445 IGVGRNTKI-RNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 445 ~~Ig~~~~I-~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.|+.+++| .+|.||+++.|+.++.+.....+++......+..|.+| +.||+++.|++|++
T Consensus 115 ~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~I~~~-v~Ig~~~~ig~~s~ 176 (262)
T 2qia_A 115 NLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQF-CIIGAHVMVGGCSG 176 (262)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTT-CEECTTCEECSSCE
T ss_pred cEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEEccCCEECCC-CEECCCCEEccCCE
Confidence 445555555 35666666666666655554444554444455555555 55666666666664
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=91.90 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=47.2
Q ss_pred eecCCCcceeeCCCcEEe----eeEeCCCCEECCCcEEecCC-------------------CCccCCCCCCCeEEcCCeE
Q 010554 437 LLAEGKVPIGVGRNTKIR----NCIIDKNVKIGKDVVIVNKD-------------------DVQEADRPELGFYIRSGIT 493 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~----nsIIg~na~Ig~~~~i~~~~-------------------~~~e~~~~~~~~~i~~g~~ 493 (507)
.|+++ +.||.+++|. ++.||++|.||++|+|.+++ .+++...++.+..|..| +
T Consensus 107 ~IG~~---~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v~Igd~v~IG~~a~I~~g-v 182 (252)
T 3jqy_B 107 IIGRR---TTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDIIISSYVWVGRNVSIMKG-V 182 (252)
T ss_dssp EECTT---CEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCEEECSSCEECSSEEECTT-C
T ss_pred EECCC---CEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCeEEecCcEECCCCEECCC-C
Confidence 45777 7788888887 78888888888888888763 34555555555555556 5
Q ss_pred EEcCCCEeCCCccC
Q 010554 494 IIMEKATIEDGMVI 507 (507)
Q Consensus 494 vig~~~~i~~gt~i 507 (507)
+||++++|++|++|
T Consensus 183 ~IG~~~~IgagsvV 196 (252)
T 3jqy_B 183 SVGSGSVIGYGSIV 196 (252)
T ss_dssp EECTTCEECTTCEE
T ss_pred EECCCCEECCCCEE
Confidence 66777777777654
|
| >3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-07 Score=89.44 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=26.2
Q ss_pred eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 455 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+|.||+++.|+.++.+.+...+++......+..|.+| +.||+++.|++|++
T Consensus 121 ~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~-v~Ig~~~~Vg~~s~ 171 (259)
T 3hsq_A 121 DCILGNNNILTHGAVLAGHVTLGNFAFISGLVAVHQF-CFVGDYSMVAGLAK 171 (259)
T ss_dssp TCEECSSCEECTTCEECTTCEECSSCEECSSEEECTT-CEECTTCEECSSEE
T ss_pred CcEECCccEEcCCceECCccEECCCcEEeCCCEECCC-CEECCCCEECCCCE
Confidence 3555555555555555444444444445555555555 44555555555543
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=86.18 Aligned_cols=61 Identities=10% Similarity=-0.017 Sum_probs=38.5
Q ss_pred eeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 436 SLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
..++++ +.|+.++.+.++.||+++.||.+++|..... +.++..|..| ++|.++++||++|+
T Consensus 86 ~~Ig~~---~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~------IG~~~~Igag-svV~~~~~Ip~~sv 146 (194)
T 3tv0_A 86 MIIGTN---NVFEVGCYSQAMKMGDNNVIESKAYVGRNVI------LTSGCIIGAC-CNLNTFEVIPENTV 146 (194)
T ss_dssp EEECSS---CEECTTCEECCSEECSSCEECTTCEECTTEE------ECSSCEECTT-CEECCCEEECTTEE
T ss_pred eEECCc---ceEecceeEeeeeecccceecceeeECCeEE------ECCCCEECCC-CEECCCcEECCCCE
Confidence 456666 6777777777777777777777777765432 2333444445 55555666666654
|
| >3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-07 Score=94.86 Aligned_cols=39 Identities=21% Similarity=0.491 Sum_probs=19.9
Q ss_pred eeecCCCcceeeCCCcEE-----eeeEeCCCCEECCCcEEecCCCCc
Q 010554 436 SLLAEGKVPIGVGRNTKI-----RNCIIDKNVKIGKDVVIVNKDDVQ 477 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I-----~nsIIg~na~Ig~~~~i~~~~~~~ 477 (507)
.+|+++ |.||.|++| .+++||+++.|+.++.|.+...++
T Consensus 223 v~IGd~---v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG 266 (372)
T 3pmo_A 223 VTIGDD---VEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIG 266 (372)
T ss_dssp EEECSS---CEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEEC
T ss_pred eEECCC---CEECCCcEEccCcccceEECCCCEECCCCEECCCCEEC
Confidence 344555 556666666 345555555555544444433333
|
| >3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=85.75 Aligned_cols=88 Identities=14% Similarity=0.243 Sum_probs=61.8
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEE------------eeeEeCCCCEECCCcEEec
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKI------------RNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I------------~nsIIg~na~Ig~~~~i~~ 472 (507)
++.||++|.|+ ++.|....= ...|+++ |.|++++.| .+++||+++.||.++.|.+
T Consensus 33 ~v~IG~~~~I~~~~~i~~~~~---------~i~IG~~---~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~ 100 (187)
T 3r3r_A 33 DVRLADDVGIWPLVVIRGDVN---------YVAIGAR---TNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHG 100 (187)
T ss_dssp EEEECTTCEECTTCEEEEEEE---------EEEECTT---CEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEES
T ss_pred ceEECCCCEECCCcEEEcCCc---------cEEECCC---CEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeC
Confidence 55667777666 455543210 0134788 888999888 6789999999999998876
Q ss_pred CCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 473 KDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 473 ~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
..+++......+..|.+| ++||++++|++|++|
T Consensus 101 -~~Ig~~~~Ig~~~~I~~~-~~Ig~~~~Ig~~s~V 133 (187)
T 3r3r_A 101 -CTIGNRVLVGMGSIVLDG-AIIEDDVMIGAGSLV 133 (187)
T ss_dssp -CEECSSEEECTTCEECTT-CEECSSEEECTTCEE
T ss_pred -cEECCCCEECCCCEECCC-CEECCCCEECCCCEE
Confidence 467777777777777666 667777777777754
|
| >2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.8e-07 Score=92.45 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred CCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 459 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 459 g~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.|++||+++.|.+...+.....++++..|.++ +.|..+++|+++++
T Consensus 266 ~~~v~IG~~~~i~~~~~v~~~~~Ig~~~~Ig~~-~~i~~~v~Ig~~~~ 312 (374)
T 2iu8_A 266 AHQVEVGQHSMIVAQAGIAGSTKIGNHVIIGGQ-AGITGHICIADHVI 312 (374)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECSSCEECTT-CEECSSCEECTTEE
T ss_pred CCccEECCCCEEccCcccCCCcEECCCeEEecC-cEECCCcccCCCcE
Confidence 334444444444444433333344444444333 34444455555544
|
| >4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-07 Score=93.98 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.5
Q ss_pred eecCCCcceeeCCCcEE-eeeEeCCCCEECCCcEEe
Q 010554 437 LLAEGKVPIGVGRNTKI-RNCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I-~nsIIg~na~Ig~~~~i~ 471 (507)
.|+++ |.|+.+++| .+|+||++|.|+.+++|.
T Consensus 152 ~IG~~---~~I~~~~~I~~~~~IG~~~~I~~g~~Ig 184 (357)
T 4e79_A 152 EVGKD---CFIDSYVTITGSSKLRDRVRIHSSTVIG 184 (357)
T ss_dssp EECSS---CEECTTCEECTTCEECSSCEECTTCEES
T ss_pred EECCC---CEECCCcEEecccEEEeEeeccCCeEEC
Confidence 34666 667777777 467777888888777775
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-07 Score=98.79 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=36.3
Q ss_pred eee-eceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 402 CRI-KDAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 402 ~~I-~~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
|.| .++.||++|.|+ +|.|.+++| ..++.++.|. +.++++ +.||++++|. +++||++++||+++.|.
T Consensus 281 ~~i~~~~~ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~---~~ig~~~~i~~~~~ig~~~~Ig~~~~i~ 354 (459)
T 4fce_A 281 VIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDAN---CTVGPFARLRPGAELAEGAHVGNFVEIK 354 (459)
T ss_dssp EEEEEEEEECTTCEECTTCEEESCEECTTCEECSSCEEESCEECTT---CEECSSEEECTTCEECTTCEEEEEEEEE
T ss_pred eeeccceEECCCCEECCCCEEeccEECCCCEECCCcEEeCCEECCC---CEECCccEECCCcEECCCcEECCCeEEe
Confidence 444 245666666666 566666555 2444444443 455555 5555555555 55555555555555544
|
| >3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-05 Score=80.91 Aligned_cols=259 Identities=13% Similarity=0.121 Sum_probs=149.8
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceee-cCcchhhHHHHHHHHhc----CCC-EEEEEeccC-chHHHHHHHhc-cc
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV-AGCYRLIDIPMSNCINS----GIN-KIFVLTQFN-SASLNRHIART-YF 164 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI-~g~ypLId~~L~~l~~~----Gi~-~I~Vv~~~~-~~~l~~~l~~~-~~ 164 (507)
+++..|.||||.||||. ..-||.++|| .|+ .+++..++.+... |.. -.+|.|++. .+...+++.+. ||
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~F 150 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTL 150 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCccc
Confidence 47899999999999996 5789999999 566 9999999887653 332 456777654 56677777532 24
Q ss_pred CCC----cccCCCeEEEecCccC-C----CCCCC-CcccChHHHHHHH--HHHHHhhhcCCCCeEEEEcCceeccCCHHH
Q 010554 165 GNG----TNFGDGFVEVLAATQT-P----GESGK-NWFQGTADAVRQF--TWVFEDAKNRNIENVAILCGDHLYRMDYMD 232 (507)
Q Consensus 165 ~~~----~~~~~~~V~vl~~~q~-~----~~~~~-~~~~Gta~AL~~~--~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ 232 (507)
+.. .-|.+..+-.+..... + ..... ..|-|.|+-.... ...+++....+.+.+.+.+.|.+...---.
T Consensus 151 gl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~ 230 (484)
T 3gue_A 151 YEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVR 230 (484)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHH
T ss_pred CCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHH
Confidence 321 1122222222211110 0 00001 2246777655433 223444445678999999999976543256
Q ss_pred HHHHHHHcCCceEEEEEEcCCCCCccceEEEEC---------CCCc--EEEEEeCCCccccccccccccccCCCcccccc
Q 010554 233 FIQSHVDRDADITISCAAVGESRASDYGLVKID---------NMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARK 301 (507)
Q Consensus 233 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id---------~~gr--V~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~ 301 (507)
++..+..+++++.+-+.+...++ ..-|++... .+|+ |+++.|-|..... ..+ ++ .
T Consensus 231 ~lG~~~~~~~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~-~f~--------~~----~ 296 (484)
T 3gue_A 231 LLDYMHEKQLGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDED-SFQ--------NI----A 296 (484)
T ss_dssp HHHHHHHTTCSEEEEEEECCTTC-CSSEEEEEEC--------CCCEEEEEEGGGSCGGGHH-HHT--------CT----T
T ss_pred HHHHHHhcCCCEEEEEEECCCCC-CceeEEEEEccccccccCCCCCEEEEEeccCCHHHHh-hhc--------CC----C
Confidence 78889999999988877655422 235644332 2454 4444444432211 000 00 0
Q ss_pred CCceeeeEEEEEeHHHHHHHHHhhC-----CC-----C--------------CchhhhhHHhhhhcCcEEEEEec-cEEE
Q 010554 302 CPYVASMGVYVFKKDVLFKLLRWRY-----PT-----S--------------NDFGSEIIPAAIMEHDVQAYIFR-DYWE 356 (507)
Q Consensus 302 ~~~l~~~Giyif~~~iL~~ll~~~~-----~~-----~--------------~d~~~dil~~li~~~~V~~~~~~-gyw~ 356 (507)
...+.+++-..++-..|.++++... +. . +.|..++++.+ .+..++.+. ..+.
T Consensus 297 g~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~---~~~~~ieV~R~rF~ 373 (484)
T 3gue_A 297 KHCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF---DRSEAVVVPRERFA 373 (484)
T ss_dssp TSCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS---SSEEEEECCGGGCC
T ss_pred CceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC---CccEEEEEChhhcc
Confidence 1135588888999998888887531 10 0 11223333222 245555554 4466
Q ss_pred ecCCHHHHHHHHHHhh
Q 010554 357 DIGTIKSFYEANMALT 372 (507)
Q Consensus 357 dIgt~~~y~~An~~ll 372 (507)
-+-+..|++.+..++.
T Consensus 374 PvKn~sdLl~~~Sdly 389 (484)
T 3gue_A 374 PVKTCSDLLALRSDAY 389 (484)
T ss_dssp CCSSHHHHHHHHSTTE
T ss_pred ccccchHHHHHhhhce
Confidence 7788888877766554
|
| >1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.6e-07 Score=88.50 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=23.7
Q ss_pred eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 456 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++||+++.||.+|.|.+...+++...+..+..|.+ ++||+++.|++|++
T Consensus 141 v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~--v~Ig~~~~Igagsv 189 (247)
T 1qre_A 141 VYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK--SKVGNNCVLEPRSA 189 (247)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEE--EEECTTCEECTTCE
T ss_pred eEECCCCEECCCCEEcCCcEECCCCEECCCCEEec--eEECCCCEECCCCE
Confidence 55566655555555554333444444444444433 44455555544443
|
| >3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-07 Score=84.81 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=8.2
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
++||++|.||.++.|..
T Consensus 103 ~~Ig~~v~IG~~~~I~~ 119 (192)
T 3mqg_A 103 TIVRQGATLGANCTVVC 119 (192)
T ss_dssp EEECTTCEECTTCEECT
T ss_pred cEECCCcEECCCCEECC
Confidence 44444444554444443
|
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-07 Score=93.61 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCcCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCC-
Q 010554 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKN- 461 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~n- 461 (507)
+.+.+.+++. +++|. ++.||++|+|+ +|.|.+|+| ..++.++.|. ++++++ +.|+.++++. +|.|..|
T Consensus 66 a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~---~~I~~~~~i~~~s~I~~~~ 142 (334)
T 2pig_A 66 AMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREE---CAIYGDARVLNQSEILAIQ 142 (334)
T ss_dssp CEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESS---EEECTTCEEESSCEEEC--
T ss_pred eEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCC---eEEecCCEEeCCEEEeecc
Confidence 3344455554 46665 57788888887 677777777 2455555553 555555 5555555443 3444332
Q ss_pred ---------CEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 462 ---------VKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 462 ---------a~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
+.|++++.|.++ .+.+...+..+..|. + ++|++++.|+++++
T Consensus 143 ~~~~~~~~g~~I~~~a~I~~s-~I~~g~~I~~~a~I~-~-svI~~~a~I~~~a~ 193 (334)
T 2pig_A 143 GLTHEHAQILQIYDRATVNHS-RIVHQVQLYGNATIT-H-AFIEHRAEVFDFAL 193 (334)
T ss_dssp ------CCCEEECTTCEEESC-EEETTCEECTTCEEE-S-EEECTTCEECTTCE
T ss_pred eeecccCCCeEECCCCEEecc-EEcCCCEEcCCeEEe-C-cEEcCCCEECCCcE
Confidence 455555555542 333444444444443 3 55566666666554
|
| >3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-07 Score=85.45 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=24.7
Q ss_pred eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 456 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++||+++.|+.++.+.+ ..+++......+..|..| ++||+++.|++|++
T Consensus 86 ~~Ig~~~~i~~~~~i~~-~~Ig~~~~Ig~~~~I~~g-v~IG~~~~Igagsv 134 (194)
T 3tv0_A 86 MIIGTNNVFEVGCYSQA-MKMGDNNVIESKAYVGRN-VILTSGCIIGACCN 134 (194)
T ss_dssp EEECSSCEECTTCEECC-SEECSSCEECTTCEECTT-EEECSSCEECTTCE
T ss_pred eEECCcceEecceeEee-eeecccceecceeeECCe-EEECCCCEECCCCE
Confidence 34555555555555543 234444444444555555 55555555555554
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-07 Score=92.61 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=14.1
Q ss_pred hhhcCcEEEEEec--cEEEecCCHHHHHHHH
Q 010554 340 AIMEHDVQAYIFR--DYWEDIGTIKSFYEAN 368 (507)
Q Consensus 340 li~~~~V~~~~~~--gyw~dIgt~~~y~~An 368 (507)
+++.+++.+.+.. |.|..-.-++......
T Consensus 61 ~l~~g~~r~a~~~~~g~w~~~~w~kk~ill~ 91 (304)
T 3eg4_A 61 LLDRGEVRVAEKQADGNWHVNQWLKKAVLLS 91 (304)
T ss_dssp HHHTTSSCSEEECTTSCEEECHHHHHHHHHH
T ss_pred HhcCCCeEEEEEcCCCceEEeeeeeeeeeee
Confidence 4455555555543 5566544444433333
|
| >3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.5e-07 Score=92.13 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=18.5
Q ss_pred eecCCCcceeeCCCcEE-----eeeEeCCCCEECCCcEEecCCCCcc
Q 010554 437 LLAEGKVPIGVGRNTKI-----RNCIIDKNVKIGKDVVIVNKDDVQE 478 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I-----~nsIIg~na~Ig~~~~i~~~~~~~e 478 (507)
.|+++ |.||.++.| .+++||+++.|+.++.|.+...+++
T Consensus 202 ~IGd~---v~Ig~~~~I~~~~~~~~~Ig~~~~I~~~v~I~~~v~IG~ 245 (341)
T 3eh0_A 202 IIGDR---VEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHNVVIGD 245 (341)
T ss_dssp EECSS---CEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECT
T ss_pred EECCC---cEECCccEeeccccCceEeccceEECCCCEEeCCcEECC
Confidence 44454 555555555 2445555544444444443333333
|
| >1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.3e-07 Score=81.43 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=42.2
Q ss_pred eEEcCCcEEc-cceEe-----eeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 407 AIISHGCFLR-ECTVE-----HSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 407 siIg~gc~I~-~~~I~-----~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.||++|.|+ ++.|. +++| ..++.++.+. +.++++ +.||.++.|. ++.||++|.||.++.+..
T Consensus 50 ~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~---~~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~ 123 (173)
T 1v3w_A 50 IYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNY---VIIGISSVILDGAKIGDHVIIGAGAVVPP 123 (173)
T ss_dssp EEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSS---EEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred EEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCC---CEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 6778888886 56665 3555 2566666664 667766 6777777765 467777777777776654
|
| >3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.3e-07 Score=91.87 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=19.0
Q ss_pred eeeCCCcEEee---------eEeCCCCEECCCcEEecCCCCcc
Q 010554 445 IGVGRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQE 478 (507)
Q Consensus 445 ~~Ig~~~~I~n---------sIIg~na~Ig~~~~i~~~~~~~e 478 (507)
|.|+.++.|.+ ++||++|.||.+++|..+..+++
T Consensus 199 v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 241 (316)
T 3tk8_A 199 VHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEE 241 (316)
T ss_dssp CEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECT
T ss_pred CEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECC
Confidence 45555555544 56666666666666655433333
|
| >3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=7.5e-07 Score=84.18 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=37.5
Q ss_pred eEEcCCcEEc-cceEee---------------eeE---EeeccCceEe--eeecCCCcceeeCCCcEEeeeEeCCCCEEC
Q 010554 407 AIISHGCFLR-ECTVEH---------------SIV---DYYQTESEIA--SLLAEGKVPIGVGRNTKIRNCIIDKNVKIG 465 (507)
Q Consensus 407 siIg~gc~I~-~~~I~~---------------Sii---~~vg~~~~i~--s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig 465 (507)
+.||++|.|+ +|.|.. ++| ..++.++.|. +.|+++ |.||.++.|.+++||++|.||
T Consensus 80 v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~~~I~~~v~Ig~~---v~IG~~a~I~~~~Ig~~~~Ig 156 (213)
T 3kwd_A 80 FHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHMALIHGPAYIGDG---CFIGFRSTVFNARVGAGCVVM 156 (213)
T ss_dssp EEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTTCEEEEEEEECTT---CEECTTCEEEEEEECTTCEEC
T ss_pred eEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCCcEEcCCCEECCC---CEECCCCEEeCcEECCCCEEc
Confidence 4666666665 455543 333 2455555552 566666 666777776666677777777
Q ss_pred CCcEEe
Q 010554 466 KDVVIV 471 (507)
Q Consensus 466 ~~~~i~ 471 (507)
+++.+.
T Consensus 157 ags~V~ 162 (213)
T 3kwd_A 157 MHVLIQ 162 (213)
T ss_dssp SSCEEE
T ss_pred CCCEEC
Confidence 766664
|
| >3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-06 Score=87.74 Aligned_cols=14 Identities=7% Similarity=0.071 Sum_probs=6.2
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
++|.++++|+++++
T Consensus 181 ~~V~~~v~IG~~a~ 194 (305)
T 3t57_A 181 SVVHQFCHIGSFAF 194 (305)
T ss_dssp CEECTTCEECTTCE
T ss_pred CEEcCCeEECCCCE
Confidence 33344444444443
|
| >3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.7e-07 Score=89.81 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=35.0
Q ss_pred eecCCCcceeeCCCcEEee---------eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCC
Q 010554 437 LLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSG 491 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~n---------sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g 491 (507)
.|+++ |.|+.++.|.+ ++||+||.||.+|+|..+..+++...+..|..|..|
T Consensus 178 ~IG~~---v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgagsvV~~g 238 (304)
T 3eg4_A 178 QIGKN---VHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKS 238 (304)
T ss_dssp EECTT---CEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred ccCCC---cEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCCEEcCC
Confidence 44666 67777777766 888888888888888776555555444444444444
|
| >3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.1e-07 Score=88.42 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=6.0
Q ss_pred CcEEEEEeccEEE
Q 010554 344 HDVQAYIFRDYWE 356 (507)
Q Consensus 344 ~~V~~~~~~gyw~ 356 (507)
.++... .+|.|.
T Consensus 45 ~rv~~~-~~~~w~ 56 (276)
T 3gos_A 45 LRVAEK-IDGQWV 56 (276)
T ss_dssp SCSEEE-ETTEEE
T ss_pred cceeec-cCCcHh
Confidence 344443 456665
|
| >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.9e-07 Score=91.50 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=42.9
Q ss_pred CCceec-ceeee-ceEEcCCcEEc-cceEeeeeE---EeeccCceEe-eeecCCCcceeeCCCcEEe
Q 010554 395 PPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV---DYYQTESEIA-SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 395 ~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii---~~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~ 454 (507)
+.+.|+ ++.|. +++||++|.|+ ++.|.+|+| ..++.++.+. ++++++ +.||.+++|.
T Consensus 267 ~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~---~~Ig~~~~i~ 330 (401)
T 2ggo_A 267 KGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAED---VNFGAGTLIA 330 (401)
T ss_dssp TTCEECSSCEECTTEEECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTT---CEECTTCEEC
T ss_pred CCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCC---cEECCCcEEc
Confidence 334443 35554 68899999998 688888888 3677777774 888998 8999999997
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=87.32 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=26.3
Q ss_pred eeecCCCcceeeCCCcEEee---------eEeCCCCEECCCcEE
Q 010554 436 SLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVI 470 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n---------sIIg~na~Ig~~~~i 470 (507)
+.|+++ |.|+.++.|.. ++||+||.||.|+.|
T Consensus 231 v~IGdn---v~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI 271 (347)
T 3r5d_A 231 VFVGKG---SDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI 271 (347)
T ss_dssp CEECTT---EEECTTCEECC------CCCCEECTTCEECTTCEE
T ss_pred EEECCC---CEECCCCEEccccCCCCccceEECCCCEECCCCEE
Confidence 567787 78888888865 788888888888888
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=86.66 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=25.3
Q ss_pred eeecCCCcceeeCCCcEEee---------eEeCCCCEECCCcEE
Q 010554 436 SLLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVI 470 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~n---------sIIg~na~Ig~~~~i 470 (507)
+.|+++ |.|+.|+.|.. ++||+||.||.|+.|
T Consensus 208 v~IGd~---v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI 248 (332)
T 3fsy_A 208 VVVGDG---SDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL 248 (332)
T ss_dssp CEECTT---CEECTTCEECSBCC---CCBCEECTTCEECTTCEE
T ss_pred eEECCC---CEECCCCEEcCCCCCCCccceEECCCCEECCCCEE
Confidence 556777 77788877764 888888888888888
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=83.42 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=12.1
Q ss_pred eeeCCCcEEee-eEeCCCCEECCCcEEe
Q 010554 445 IGVGRNTKIRN-CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 445 ~~Ig~~~~I~n-sIIg~na~Ig~~~~i~ 471 (507)
+.|+.++.|.+ ++||++|.||.+++|.
T Consensus 154 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~ 181 (220)
T 4ea9_A 154 CHLGPASALAGGVSVGERAFLGVGARVI 181 (220)
T ss_dssp CEECTTCEECSSCEECTTCEECTTCEEC
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEEc
Confidence 34444444443 4444444444444444
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-06 Score=88.33 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=20.3
Q ss_pred EEEeccEEEecCC--HHHHHHHHHHhhc
Q 010554 348 AYIFRDYWEDIGT--IKSFYEANMALTK 373 (507)
Q Consensus 348 ~~~~~gyw~dIgt--~~~y~~An~~ll~ 373 (507)
++....||.+.|. |++|....+.+..
T Consensus 165 g~l~~~~Wt~~G~~~~~~f~~~~~~l~~ 192 (387)
T 2rij_A 165 GLLSNVAWSDDKPIELEYLRANEMRLKM 192 (387)
T ss_dssp HHSCCEEEETTEEECHHHHHHHHHHHHH
T ss_pred ccCceeeeccCcccCHHHHHHHHHHHHh
Confidence 3344568999998 8999999988874
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=81.44 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=9.9
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
+++||++|.||+++.|.+
T Consensus 100 ~i~IG~~~~Ig~~~~I~~ 117 (215)
T 2wlg_A 100 KISIGKDCMLAHGYEIRN 117 (215)
T ss_dssp EEEECTTCEECTTEEEES
T ss_pred CEEECCCCEEcCCEEEEC
Confidence 455555555555555554
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=79.73 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=4.4
Q ss_pred eEEcCCcEEc
Q 010554 407 AIISHGCFLR 416 (507)
Q Consensus 407 siIg~gc~I~ 416 (507)
+.||++|+|.
T Consensus 77 ~~IG~~~~i~ 86 (188)
T 3srt_A 77 IHVGENFFAN 86 (188)
T ss_dssp EEECTTEEEC
T ss_pred eEECCccccc
Confidence 3444444444
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-06 Score=80.10 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=5.7
Q ss_pred eEeCCCCEECCCcEE
Q 010554 456 CIIDKNVKIGKDVVI 470 (507)
Q Consensus 456 sIIg~na~Ig~~~~i 470 (507)
|+|.++++||++|+|
T Consensus 143 ~~I~~gv~IG~~~vI 157 (199)
T 3ftt_A 143 VAVLPGVTIGEGSVI 157 (199)
T ss_dssp CEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEE
Confidence 333333333333333
|
| >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.7e-06 Score=79.22 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=11.2
Q ss_pred EEEecCCHHHHHHHHHHhhc
Q 010554 354 YWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 354 yw~dIgt~~~y~~An~~ll~ 373 (507)
+..-++++...++....+.+
T Consensus 50 ~~iaig~~~~r~~~~~~l~~ 69 (194)
T 3bfp_A 50 FFIAIGNNEIRKKIYQKISE 69 (194)
T ss_dssp EEECCCCHHHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 34556677665555555543
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.7e-06 Score=79.37 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.6
Q ss_pred EEcCCcEEc
Q 010554 408 IISHGCFLR 416 (507)
Q Consensus 408 iIg~gc~I~ 416 (507)
+||++|.|+
T Consensus 98 ~IG~~~~Ig 106 (195)
T 3nz2_A 98 TIGDHVLIG 106 (195)
T ss_dssp EECTTCEEC
T ss_pred EECCCCEEC
Confidence 334444443
|
| >3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.7e-06 Score=78.74 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=12.0
Q ss_pred eeeEeCCCCEECCCcEEec
Q 010554 454 RNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 454 ~nsIIg~na~Ig~~~~i~~ 472 (507)
.+++||++|.||.++.|..
T Consensus 133 ~~v~IG~~v~IG~~~~I~~ 151 (205)
T 3vbi_A 133 GKVILKKHVIIGAHSIIFP 151 (205)
T ss_dssp CCEEECTTCEECTTCEECS
T ss_pred CCEEECCCCEECCCCEEcC
Confidence 3466666666666666654
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-06 Score=83.23 Aligned_cols=78 Identities=14% Similarity=0.278 Sum_probs=42.7
Q ss_pred CcCCCceec-ceeee---ceEEcCCcEEc-cceEeeee-EEeeccCceE-eeeecCCCcceeeCCCcEEe-eeEeCCCCE
Q 010554 392 RFLPPTKID-NCRIK---DAIISHGCFLR-ECTVEHSI-VDYYQTESEI-ASLLAEGKVPIGVGRNTKIR-NCIIDKNVK 463 (507)
Q Consensus 392 ~~~~p~~i~-~~~I~---~siIg~gc~I~-~~~I~~Si-i~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~-nsIIg~na~ 463 (507)
.+.|.++|+ ++.|. +++||++|.|+ +|.|.+.+ |+..+.+... ...|+++ |.||.|++|. ++.||+||+
T Consensus 166 ~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~---v~IGaga~Il~gv~IG~~a~ 242 (287)
T 3mc4_A 166 DIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQG---VLIGAGAKILGNIQVGQCSK 242 (287)
T ss_dssp EECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTT---CEECTTCEEESSCEECTTCE
T ss_pred EECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCC---CEECCCCEECCCcEECCCCE
Confidence 344445555 24443 45556666665 34443322 1100001111 1466777 7788888877 588888888
Q ss_pred ECCCcEEec
Q 010554 464 IGKDVVIVN 472 (507)
Q Consensus 464 Ig~~~~i~~ 472 (507)
||.|+++..
T Consensus 243 IGagsvV~k 251 (287)
T 3mc4_A 243 IAAGSVVLK 251 (287)
T ss_dssp ECTTCEECS
T ss_pred ECCCCEEcc
Confidence 888888864
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.4e-06 Score=77.51 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=3.1
Q ss_pred EcCCcEEc
Q 010554 409 ISHGCFLR 416 (507)
Q Consensus 409 Ig~gc~I~ 416 (507)
||++|.|+
T Consensus 101 IG~~~~Ig 108 (190)
T 3hjj_A 101 IGDHCMFA 108 (190)
T ss_dssp ECTTCEEC
T ss_pred ECCceEEc
Confidence 33333333
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=83.52 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=7.9
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
++||++|.||.+|+|..
T Consensus 120 v~IG~~v~IG~~a~I~~ 136 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIMP 136 (220)
T ss_dssp EEECSSCEECTTCEECT
T ss_pred eEECCCcEECCCCEEeC
Confidence 34444444444444443
|
| >3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-06 Score=86.40 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=6.0
Q ss_pred EEcCCCEeCCCcc
Q 010554 494 IIMEKATIEDGMV 506 (507)
Q Consensus 494 vig~~~~i~~gt~ 506 (507)
.||++++|++|++
T Consensus 274 tIGd~~iIGAGSV 286 (347)
T 3r5d_A 274 PLGDRNIVEAGLY 286 (347)
T ss_dssp CBCTTCEECTTCE
T ss_pred EECCCCEECCCCE
Confidence 3444444444443
|
| >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-06 Score=89.36 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=57.9
Q ss_pred ceEEcCCcEEccceEeeeeE---EeeccCceE-eeeecCCCcceeeCCCcEEeeeEeCCC-------------------C
Q 010554 406 DAIISHGCFLRECTVEHSIV---DYYQTESEI-ASLLAEGKVPIGVGRNTKIRNCIIDKN-------------------V 462 (507)
Q Consensus 406 ~siIg~gc~I~~~~I~~Sii---~~vg~~~~i-~s~l~~g~~~~~Ig~~~~I~nsIIg~n-------------------a 462 (507)
++.|++++.|.++.|.+++| +.++. +.+ .+.|+++ |.||++|+|.++++..+ +
T Consensus 314 ~~~i~~~~~i~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~---~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 389 (451)
T 1yp2_A 314 QPRYLPPSKMLDADVTDSVIGEGCVIKN-CKIHHSVVGLR---SCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPI 389 (451)
T ss_dssp CCCCCCCEEEEEEEEEEEEECTTCEEEE-EEEESCEECTT---CEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCS
T ss_pred CCccCCCeEEcceEEeCeEECCCCEEcc-eEEeccEECCC---CEECCCCEEcCceEECCCCcccccccccccccCceeE
Confidence 34455555554455555444 12332 344 3788888 88999999988888777 8
Q ss_pred EECCCcEEecCCCCccCCCCCCCeEEcCC--e---EEEcCCCEeCCC
Q 010554 463 KIGKDVVIVNKDDVQEADRPELGFYIRSG--I---TIIMEKATIEDG 504 (507)
Q Consensus 463 ~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g--~---~vig~~~~i~~g 504 (507)
.||+|+.|.+ ..+++...++.+..|..+ + .+||+++.|++|
T Consensus 390 ~Ig~~~~i~~-~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig~~ 435 (451)
T 1yp2_A 390 GIGKNCHIKR-AIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSG 435 (451)
T ss_dssp EECTTCEEES-EEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETT
T ss_pred EECCCCEEec-cEeCCCcEECCCCEEeCCcccccCceeCCCEEEcCC
Confidence 8888888875 356666666666666432 1 244555444444
|
| >3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=7e-06 Score=79.62 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=8.4
Q ss_pred EeCCCCEECCCcEEec
Q 010554 457 IIDKNVKIGKDVVIVN 472 (507)
Q Consensus 457 IIg~na~Ig~~~~i~~ 472 (507)
+||++|.||.++.|..
T Consensus 165 ~Igd~v~IG~~a~I~~ 180 (252)
T 3jqy_B 165 IISSYVWVGRNVSIMK 180 (252)
T ss_dssp EECSSCEECSSEEECT
T ss_pred EEecCcEECCCCEECC
Confidence 5555555555555544
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.1e-05 Score=86.10 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=52.9
Q ss_pred ceEEcCCcEEc-cceEeeeeEE---eeccCceEe-eeecCCCcceeeCCCcEEee--------eEeCCCCEECCCcEEec
Q 010554 406 DAIISHGCFLR-ECTVEHSIVD---YYQTESEIA-SLLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~---~vg~~~~i~-s~l~~g~~~~~Ig~~~~I~n--------sIIg~na~Ig~~~~i~~ 472 (507)
+++|+++|.|+ .+.+.+|+|+ .++..+.+. +.|+++ |.||.||.+-| ++||++|.||.++.|..
T Consensus 352 ~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~---v~IG~g~i~~n~dg~~~~~t~IGd~~~iG~~~~l~~ 428 (501)
T 3st8_A 352 GTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEY---SNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVA 428 (501)
T ss_dssp TCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSS---CEECTTCEEECBCSSSBCCEEECTTCEECTTCEEES
T ss_pred CcEEccccccCCeEEEccceecCCcEEeccceecCceEcCC---CEECCCEEEEcccCCcccCCEECCCcEECCCCEEcC
Confidence 45666666666 3456666551 222222232 556788 78888888865 88888888888888876
Q ss_pred CCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCc
Q 010554 473 KDDVQEADRPELGFYIRSGITIIMEKATIEDGM 505 (507)
Q Consensus 473 ~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt 505 (507)
.. +++++.+|..| ++|.++ ||+|+
T Consensus 429 ~v------~Ig~~~~i~ag-s~v~~d--vp~~~ 452 (501)
T 3st8_A 429 PV------TIGDGAYTGAG-TVVRED--VPPGA 452 (501)
T ss_dssp SE------EECTTCEECTT-CEECSC--BCTTC
T ss_pred Cc------EECCCCEECCC-CEECcc--cCCCC
Confidence 43 33444555555 555555 45554
|
| >3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-06 Score=84.10 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=5.4
Q ss_pred ceEEcCCcEEc
Q 010554 406 DAIISHGCFLR 416 (507)
Q Consensus 406 ~siIg~gc~I~ 416 (507)
.+.||+||.|+
T Consensus 173 gA~IGeGv~Ig 183 (332)
T 3fsy_A 173 GAHLAPGTTVM 183 (332)
T ss_dssp TEEECTTCEEC
T ss_pred CCEECCCCEEc
Confidence 34455555554
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=98.07 E-value=8e-06 Score=75.52 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=6.7
Q ss_pred eEEcCCcEEc-cceE
Q 010554 407 AIISHGCFLR-ECTV 420 (507)
Q Consensus 407 siIg~gc~I~-~~~I 420 (507)
..||++|.|+ +|.|
T Consensus 95 i~IG~~v~Ig~~v~I 109 (185)
T 2p2o_A 95 VRIGDHCFIGPGVHI 109 (185)
T ss_dssp EEECTTCEECTTCEE
T ss_pred eEECCCcEEeCCCEE
Confidence 4455555554 3443
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-05 Score=75.94 Aligned_cols=27 Identities=37% Similarity=0.574 Sum_probs=10.9
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
+.||++|.|. +|+|.++++||+||+|+
T Consensus 132 v~IGd~v~IG~~a~I~~gv~IG~~~vIg 159 (203)
T 1krr_A 132 ITIGNNVWIGSHVVINPGVTIGDNSVIG 159 (203)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred cEECCCeEECCCCEEeCCeEECCCCEEC
Confidence 3344444443 34444444444444443
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=98.03 E-value=1e-05 Score=74.67 Aligned_cols=8 Identities=38% Similarity=0.904 Sum_probs=3.0
Q ss_pred EcCCcEEc
Q 010554 409 ISHGCFLR 416 (507)
Q Consensus 409 Ig~gc~I~ 416 (507)
||++|.|+
T Consensus 95 IG~~v~Ig 102 (182)
T 1ocx_A 95 IGDNCMLA 102 (182)
T ss_dssp ECTTCEEC
T ss_pred EcCCcEEe
Confidence 33333333
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=98.01 E-value=4.1e-06 Score=83.62 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=16.8
Q ss_pred eecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 437 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
.|+++ |.||.|++|. ++.||+||.||.|+++.
T Consensus 225 ~IGd~---v~IGaga~Ilggv~IG~~a~IGagsvV~ 257 (313)
T 3q1x_A 225 TVGDY---VTIGTGAKVLGNIIVGSHVRIGANCWID 257 (313)
T ss_dssp EECSS---CEECTTCEEESSCEECSSEEECTTCEEC
T ss_pred EECCC---CEECCCCEECCCcEECCCCEECCCCEEC
Confidence 45555 5555555544 35555555555555554
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.2e-06 Score=82.21 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=42.6
Q ss_pred CCCcCCCceec-ceeee---ceEEcCCcEEc-cceEeeeeEEeeccCc-----------eE--eeeecCCCcceeeCCCc
Q 010554 390 SPRFLPPTKID-NCRIK---DAIISHGCFLR-ECTVEHSIVDYYQTES-----------EI--ASLLAEGKVPIGVGRNT 451 (507)
Q Consensus 390 ~~~~~~p~~i~-~~~I~---~siIg~gc~I~-~~~I~~Sii~~vg~~~-----------~i--~s~l~~g~~~~~Ig~~~ 451 (507)
...+.|.++|+ ++.|. +++||++|.|+ +|.|...+. +|..+ .+ ...|+++ |.||.|+
T Consensus 190 gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvt--Ig~~~~~~~~~g~~i~~~~~~~~IGd~---V~IGaga 264 (310)
T 3f1x_A 190 GIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVT--LGAKSFPLDNNGNPIKGIPRHPILEDD---VIVYSNA 264 (310)
T ss_dssp SCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCE--EECC--------------CCSCEECTT---CEECTTC
T ss_pred CcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCE--ECCCccccccccccccCCCCCCEECCC---cEEcCCC
Confidence 34455556666 35552 56777777776 455533221 22222 01 1356666 6666666
Q ss_pred EEe-eeEeCCCCEECCCcEEec
Q 010554 452 KIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 452 ~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+|. ++.||+||+||.|+++..
T Consensus 265 ~Il~gv~IGd~a~IGagsvV~~ 286 (310)
T 3f1x_A 265 TILGRVTIGKGATVGGNIWVTE 286 (310)
T ss_dssp EEESSCEECTTCEECSSCEECS
T ss_pred EECCCcEECCCCEECCCCEECC
Confidence 666 566666666666666653
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=78.40 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=25.1
Q ss_pred CCeEE--EEcCceeccCCHHHHHHHHHHcC
Q 010554 214 IENVA--ILCGDHLYRMDYMDFIQSHVDRD 241 (507)
Q Consensus 214 ~~~~l--Vl~gD~i~~~dl~~ll~~h~~~~ 241 (507)
.|++| ++++|++...+|.+++.+|...+
T Consensus 19 ~EP~L~~~l~~~IL~~~~l~~aLa~~la~k 48 (267)
T 1ssq_A 19 NEPMLASFFHSTILKHQNLGGALSYLLANK 48 (267)
T ss_dssp HCHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 38999 99999999999999999998764
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=78.44 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=25.3
Q ss_pred CCeEE--EEcCceeccCCHHHHHHHHHHcC
Q 010554 214 IENVA--ILCGDHLYRMDYMDFIQSHVDRD 241 (507)
Q Consensus 214 ~~~~l--Vl~gD~i~~~dl~~ll~~h~~~~ 241 (507)
.+++| ++++|++...+|.+++.+|...+
T Consensus 39 ~EP~L~~~l~~~IL~~~~l~~aLa~~La~k 68 (289)
T 1t3d_A 39 CEPMLASFYHATLLKHENLGSALSYMLANK 68 (289)
T ss_dssp HCGGGHHHHHHHTTTCSSHHHHHHHHHHHH
T ss_pred cCCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence 48999 99999999999999999998764
|
| >3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-05 Score=71.61 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=30.0
Q ss_pred ecCCCcceeeCCCcEEee-------------------eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCC
Q 010554 438 LAEGKVPIGVGRNTKIRN-------------------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEK 498 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~n-------------------sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~ 498 (507)
|+++ |.||.++.|.. ++||+||.||.|++|..+ ++||++
T Consensus 99 IG~~---~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g-------------------v~IG~~ 156 (195)
T 3nz2_A 99 IGDH---VLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQG-------------------VTIGAR 156 (195)
T ss_dssp ECTT---CEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTT-------------------CEECTT
T ss_pred ECCC---CEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCC-------------------CEECCC
Confidence 4676 77777777754 466666666666666543 455666
Q ss_pred CEeCCCcc
Q 010554 499 ATIEDGMV 506 (507)
Q Consensus 499 ~~i~~gt~ 506 (507)
++|++|++
T Consensus 157 ~vIgagsv 164 (195)
T 3nz2_A 157 SVVAANSV 164 (195)
T ss_dssp CEECTTCE
T ss_pred CEECCCCE
Confidence 66666655
|
| >1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00015 Score=67.99 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=12.6
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
|.||.|+.|. ++.||+||.||.++++.
T Consensus 138 v~IG~~a~I~~gv~IG~~~vIgagsvV~ 165 (203)
T 1krr_A 138 VWIGSHVVINPGVTIGDNSVIGAGSIVT 165 (203)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECCCCEEeCCeEECCCCEECCCCEEC
Confidence 4444444444 34444444444444443
|
| >2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=7.9e-05 Score=70.24 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=20.4
Q ss_pred eecCCCcceeeCCCcEEeee--------------------EeCCCCEECCCcEEec
Q 010554 437 LLAEGKVPIGVGRNTKIRNC--------------------IIDKNVKIGKDVVIVN 472 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~ns--------------------IIg~na~Ig~~~~i~~ 472 (507)
.|+++ |.||++++|.++ +||++|.||.+++|..
T Consensus 102 ~IG~~---~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~ 154 (215)
T 2wlg_A 102 SIGKD---CMLAHGYEIRNTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILK 154 (215)
T ss_dssp EECTT---CEECTTEEEESCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECT
T ss_pred EECCC---CEEcCCEEEECCCCcccccccccccccCCCCeEECCCcEECCCCEECC
Confidence 45666 666777776653 6666666666666654
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.76 E-value=3.1e-05 Score=73.01 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=8.0
Q ss_pred ceEEcCCcEEc-cceE
Q 010554 406 DAIISHGCFLR-ECTV 420 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I 420 (507)
++.||++|.|+ +++|
T Consensus 58 ~v~IG~~~~I~~~v~i 73 (212)
T 3eev_A 58 KLVIGSFCSIGSGAVF 73 (212)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CcEECCCCEECCCCEE
Confidence 34566666665 3433
|
| >3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.8e-05 Score=76.52 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=22.4
Q ss_pred eecCCCcceeeCCCcEEee---------eEeCCCCEECCCcEEecC
Q 010554 437 LLAEGKVPIGVGRNTKIRN---------CIIDKNVKIGKDVVIVNK 473 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~n---------sIIg~na~Ig~~~~i~~~ 473 (507)
.|+++ |.|+.+++|.+ ++||+||.||.|++|...
T Consensus 192 ~IGd~---v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~g 234 (287)
T 3mc4_A 192 VVEDN---VSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGN 234 (287)
T ss_dssp EECSS---CEEETTCEEEC-----CCCSCEECTTCEECTTCEEESS
T ss_pred EECCC---CEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCC
Confidence 34555 55666666654 577777777777777654
|
| >3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=6.1e-05 Score=69.70 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=21.7
Q ss_pred ecCCCcceeeCCCcEEee-------------------eEeCCCCEECCCcEEec
Q 010554 438 LAEGKVPIGVGRNTKIRN-------------------CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 438 l~~g~~~~~Ig~~~~I~n-------------------sIIg~na~Ig~~~~i~~ 472 (507)
|+++ |.||.++.|.+ ++||++|.||.+++|..
T Consensus 101 IG~~---~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~ 151 (190)
T 3hjj_A 101 IGDH---CMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINP 151 (190)
T ss_dssp ECTT---CEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECT
T ss_pred ECCc---eEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECC
Confidence 4777 77888888843 46666666666666654
|
| >3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A | Back alignment and structure |
|---|
Probab=97.70 E-value=5.5e-05 Score=75.47 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=11.8
Q ss_pred eeEeCCCCEECCCcEEec
Q 010554 455 NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~ 472 (507)
+++||+||.||.||+|..
T Consensus 223 ~~~IGd~v~IGaga~Ilg 240 (313)
T 3q1x_A 223 HPTVGDYVTIGTGAKVLG 240 (313)
T ss_dssp SCEECSSCEECTTCEEES
T ss_pred CCEECCCCEECCCCEECC
Confidence 346777777777776654
|
| >3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A | Back alignment and structure |
|---|
Probab=97.66 E-value=3.7e-05 Score=71.77 Aligned_cols=54 Identities=13% Similarity=0.272 Sum_probs=32.3
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEee-------------------eEeCCCCEEC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRN-------------------CIIDKNVKIG 465 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~n-------------------sIIg~na~Ig 465 (507)
++.||++|+|+ +|.|.++- ...|+++ |.||+||.|.+ ++||+||.||
T Consensus 74 ~~~IG~~~~I~~~~~i~~~~----------~v~IG~~---v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG 140 (199)
T 3ftt_A 74 NVKLGKNVYVNTNCYFMDGG----------QITIGDN---VFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFG 140 (199)
T ss_dssp TEEECSSEEECTTEEEECSS----------CEEECSS---EEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEEC
T ss_pred CcEECCCeEECCCeEEecCC----------EEEECCC---CEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEc
Confidence 45566666665 44443220 0124777 88888888843 3577777777
Q ss_pred CCcEEec
Q 010554 466 KDVVIVN 472 (507)
Q Consensus 466 ~~~~i~~ 472 (507)
.+++|..
T Consensus 141 ~~~~I~~ 147 (199)
T 3ftt_A 141 GHVAVLP 147 (199)
T ss_dssp TTCEECT
T ss_pred CCCEECC
Confidence 7777754
|
| >1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0002 Score=69.89 Aligned_cols=34 Identities=35% Similarity=0.552 Sum_probs=24.6
Q ss_pred eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
..|+++ |.||.|++|. ++.||++|+||.|+++..
T Consensus 190 ~~IGd~---v~IGaga~Il~gv~IG~~a~IGagsvV~~ 224 (267)
T 1ssq_A 190 PKVREG---VMIGAGAKILGNIEVGKYAKIGANSVVLN 224 (267)
T ss_dssp CEECTT---CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred eEECCC---eEEcCCCEEeCCcEECCCCEECCCCEEcc
Confidence 456777 7777777775 577777777777777764
|
| >2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00045 Score=63.61 Aligned_cols=11 Identities=9% Similarity=0.389 Sum_probs=5.5
Q ss_pred ceEEcCCcEEc
Q 010554 406 DAIISHGCFLR 416 (507)
Q Consensus 406 ~siIg~gc~I~ 416 (507)
+..||++|+|.
T Consensus 74 ~v~IG~~~~i~ 84 (185)
T 2p2o_A 74 NIHVGENFFMN 84 (185)
T ss_dssp TEEECTTEEEC
T ss_pred CEEECCeeEEc
Confidence 34455555554
|
| >3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=6.9e-05 Score=69.26 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=45.0
Q ss_pred cCCCcCCCceec---ceeee-ceEEcCCcEEcc-ceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEE----------
Q 010554 389 TSPRFLPPTKID---NCRIK-DAIISHGCFLRE-CTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKI---------- 453 (507)
Q Consensus 389 ~~~~~~~p~~i~---~~~I~-~siIg~gc~I~~-~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I---------- 453 (507)
....+.+|..+. ++.|. +++|+++|.|.+ +.|. |+++ |.||.++.|
T Consensus 61 ~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~i~----------------IG~~---~~Ig~~v~I~~~~h~~~~~ 121 (188)
T 3srt_A 61 KQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCKIE----------------IGDN---VMLAPNVQIYTAYHPIDAQ 121 (188)
T ss_dssp SCEEECSCEEESSSTTEEECTTEEECTTEEEECSSCEE----------------ECSS---CEECTTCEEECEECCSSHH
T ss_pred CCCEEcCCEEEEeCCCeEECCcccccCceEEecCCceE----------------ECCe---eEECCCcEEeeCCccCchh
Confidence 344556676663 57776 788999998873 3331 3777 788888888
Q ss_pred ---------eeeEeCCCCEECCCcEEec
Q 010554 454 ---------RNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 454 ---------~nsIIg~na~Ig~~~~i~~ 472 (507)
..++||+||.||.+|+|..
T Consensus 122 ~~~~~~~~~~~v~IG~~v~IG~~~~I~~ 149 (188)
T 3srt_A 122 LRNSGIEYGSPVKIGDNVWIGGGVIITP 149 (188)
T ss_dssp HHHTTEEEECCEEECSSCEECTTCEECT
T ss_pred hccccceECCCcEECCCcEEcCCCEECC
Confidence 3567777777777777764
|
| >1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00024 Score=70.01 Aligned_cols=34 Identities=29% Similarity=0.523 Sum_probs=24.3
Q ss_pred eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 436 SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
..|+++ |.||.|++|. ++.||++|+||.|+++..
T Consensus 210 ~~IGd~---v~IGaga~Ilggv~IG~~a~IGagsvV~~ 244 (289)
T 1t3d_A 210 PKIREG---VMIGAGAKILGNIEVGRGAKIGAGSVVLQ 244 (289)
T ss_dssp CEECTT---CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred eEECCC---eEECCCCEEecCcEECCCCEECCCCEEcc
Confidence 456777 7777777776 577777777777777764
|
| >2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.52 E-value=5e-05 Score=77.55 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=17.7
Q ss_pred eeecCCCcceeeCCCcEEe----e-----eEeCCCCEECCCcE
Q 010554 436 SLLAEGKVPIGVGRNTKIR----N-----CIIDKNVKIGKDVV 469 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~----n-----sIIg~na~Ig~~~~ 469 (507)
+.|+++ |.|+.++.|. + ++||++|.||.|+.
T Consensus 265 vvIGdn---v~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv 304 (387)
T 2rij_A 265 AIVGEG---SDVGGGASILGVLSGTSGNAISVGKACLLGANSV 304 (387)
T ss_dssp CEECTT---CEECTTCEECCBCSSTTCCBCEECTTCEECTTCE
T ss_pred CEECCC---CEECCCceEcceecCCCccCeEEeCCCEECCCCc
Confidence 344555 5566666432 2 56666666666666
|
| >3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=97.52 E-value=7.1e-05 Score=74.53 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=10.6
Q ss_pred EeCCCCEECCCcEEec
Q 010554 457 IIDKNVKIGKDVVIVN 472 (507)
Q Consensus 457 IIg~na~Ig~~~~i~~ 472 (507)
+||+||.||.|++|..
T Consensus 253 ~IGd~V~IGaga~Il~ 268 (310)
T 3f1x_A 253 ILEDDVIVYSNATILG 268 (310)
T ss_dssp EECTTCEECTTCEEES
T ss_pred EECCCcEEcCCCEECC
Confidence 5666666666666664
|
| >1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0011 Score=60.89 Aligned_cols=16 Identities=44% Similarity=0.470 Sum_probs=7.1
Q ss_pred eEeCCCCEECCCcEEe
Q 010554 456 CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~ 471 (507)
++||++|.||.+++|.
T Consensus 129 v~IG~~v~Ig~~a~I~ 144 (182)
T 1ocx_A 129 VTIGNNVWIGGRAVIN 144 (182)
T ss_dssp EEECTTCEECTTCEEC
T ss_pred eEEeCCeEECCCCEEC
Confidence 4444444444444443
|
| >3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0017 Score=69.76 Aligned_cols=220 Identities=14% Similarity=0.138 Sum_probs=123.7
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeec---CcchhhHHHHHHHHhc-CCC-EEEEEecc-CchHHHHHHHhcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVA---GCYRLIDIPMSNCINS-GIN-KIFVLTQF-NSASLNRHIARTYFGN 166 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~---g~ypLId~~L~~l~~~-Gi~-~I~Vv~~~-~~~~l~~~l~~~~~~~ 166 (507)
+++..|+||||.||||. ...||.++|++ |+ +++++.++++.+. |.. -++|.|++ ..+...+++.+ | +.
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-f-gl 186 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-L-QL 186 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-T-TC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-h-CC
Confidence 47899999999999997 57899999997 88 9999999998863 432 45666654 46777888865 4 32
Q ss_pred Ccc----cCCCeEEEecCcc-C-C-CCCC--CCcccChHHHHHHHHH--------------------HHHhhhcCCCCeE
Q 010554 167 GTN----FGDGFVEVLAATQ-T-P-GESG--KNWFQGTADAVRQFTW--------------------VFEDAKNRNIENV 217 (507)
Q Consensus 167 ~~~----~~~~~V~vl~~~q-~-~-~~~~--~~~~~Gta~AL~~~~~--------------------~l~~~~~~~~~~~ 217 (507)
... |.++.+-.+.... . . .+.+ ...+-|.|+-...... .+++....+.+.+
T Consensus 187 ~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi 266 (630)
T 3ogz_A 187 EVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESI 266 (630)
T ss_dssp CCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEE
T ss_pred CcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEE
Confidence 110 1111122111000 0 0 0000 1224577775544322 4555445678999
Q ss_pred EEEcCceec-cCCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEE--CCCCcE-E-EEEe---CCCccccccccccc
Q 010554 218 AILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKI--DNMGRI-A-QFAE---KPSGANLKAMQVDT 289 (507)
Q Consensus 218 lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~i--d~~grV-~-~~~e---Kp~~~~~~~~~~~~ 289 (507)
.+.+-|.+. ..---.++..+..+++++.+-+.+... ...-|++.. ..+|+. . ...| -+....... .-+.
T Consensus 267 ~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~-~~~g 343 (630)
T 3ogz_A 267 VFIQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALN-KDGG 343 (630)
T ss_dssp EEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC------
T ss_pred EEEccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhcc-CCCc
Confidence 999999943 333345788889999998887766432 233455443 245665 2 2333 111100000 0000
Q ss_pred cccCCCccccccCCceeeeEEEEEeHHHHHHHHHh
Q 010554 290 SLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~ 324 (507)
..+.- .........|+..+.|+-+.+.+.++.
T Consensus 344 ~~~~~---~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 344 DEVSD---PTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp ----------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred ccccc---ccccccccccceeeeEEHHHHHHHHHh
Confidence 00000 000122345899999999866666653
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00018 Score=68.18 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=3.6
Q ss_pred EEcCCcEEc
Q 010554 408 IISHGCFLR 416 (507)
Q Consensus 408 iIg~gc~I~ 416 (507)
.||++|.|+
T Consensus 67 ~IG~~~~I~ 75 (219)
T 4e8l_A 67 IIGRFCSIG 75 (219)
T ss_dssp EECSSCEEC
T ss_pred EECCCCEEc
Confidence 344444443
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00036 Score=65.64 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=8.3
Q ss_pred eEEcCCcEEc-cceE
Q 010554 407 AIISHGCFLR-ECTV 420 (507)
Q Consensus 407 siIg~gc~I~-~~~I 420 (507)
++||++|.|+ +++|
T Consensus 61 v~IG~~~~Ig~gv~I 75 (209)
T 1mr7_A 61 LKIGKFCSIGPGVTI 75 (209)
T ss_dssp EEECSSCEECTTCEE
T ss_pred EEECCCCEEcCCCEE
Confidence 5666666666 4444
|
| >4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00018 Score=68.15 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=12.8
Q ss_pred CeEEcCCeEEEcCCCEeCCCccC
Q 010554 485 GFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 485 ~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+..|..| ++||++++|++|++|
T Consensus 131 ~a~I~~g-v~IG~gavIgagsvV 152 (220)
T 4hur_A 131 DVTIMPG-VKIGDGAIIAAEAVV 152 (220)
T ss_dssp TCEECTT-CEECTTCEECTTCEE
T ss_pred CCEEeCC-CEECCCCEEcCCCEE
Confidence 3445555 556666666666653
|
| >3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0004 Score=65.31 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=7.5
Q ss_pred ceEEcCCcEEc
Q 010554 406 DAIISHGCFLR 416 (507)
Q Consensus 406 ~siIg~gc~I~ 416 (507)
+..||++|.|+
T Consensus 24 ~v~IG~~t~I~ 34 (212)
T 3eev_A 24 NIIVGKHSYYS 34 (212)
T ss_dssp TEEECSSCEEC
T ss_pred CeEECCCeEEc
Confidence 56677777765
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00088 Score=63.07 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=10.6
Q ss_pred eceEEcCCcEEc-cceE
Q 010554 405 KDAIISHGCFLR-ECTV 420 (507)
Q Consensus 405 ~~siIg~gc~I~-~~~I 420 (507)
....||++|.|+ +++|
T Consensus 55 ~~i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 55 DKLVIGSFCSIGSGAAF 71 (212)
T ss_dssp CCEEECSSCEECTTCEE
T ss_pred cCEEEcCCCEECCCCEE
Confidence 356777777777 4554
|
| >1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0038 Score=58.69 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=7.9
Q ss_pred eeee-ceEEcCCcEE
Q 010554 402 CRIK-DAIISHGCFL 415 (507)
Q Consensus 402 ~~I~-~siIg~gc~I 415 (507)
..|. ++.|++||+|
T Consensus 57 i~IG~~~~Ig~~v~i 71 (212)
T 1xat_A 57 LVIGSFCSIGSGAAF 71 (212)
T ss_dssp EEECSSCEECTTCEE
T ss_pred EEEcCCCEECCCCEE
Confidence 4443 5666666665
|
| >2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.006 Score=56.88 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=69.7
Q ss_pred CceEEEEEc--CCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEE-EEEeccCchHHHHHHHhcccCCCcc
Q 010554 93 KNVAAIILG--GGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKI-FVLTQFNSASLNRHIARTYFGNGTN 169 (507)
Q Consensus 93 ~~~~aVILA--aG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I-~Vv~~~~~~~l~~~l~~~~~~~~~~ 169 (507)
+.|.+||++ +..-|||.|. .....-...++ |||+|+++.+..++++.+ ++++++... +.+
T Consensus 2 ~~~~~vip~k~g~~KtRL~~~---l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~~-------~~~------ 64 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSPV---LSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYGL-------EEM------ 64 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTTT---SCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTTC-------SSC------
T ss_pred CceEEEEEeCCCCCccccCcc---CCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHHH-------Hhh------
Confidence 468899999 7778888631 11222225578 999999999999999999 888876421 111
Q ss_pred cCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCcee--ccCCHHHHHH
Q 010554 170 FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHL--YRMDYMDFIQ 235 (507)
Q Consensus 170 ~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i--~~~dl~~ll~ 235 (507)
++ ++++. +. .|.+++++.+...+ .+.++++.||+- ....+..+++
T Consensus 65 ~~---~~~v~--~~---------~gl~~sl~~a~~~~-------~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 65 TE---ARVLL--DE---------KDLNEALNRYLKEA-------EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp CS---SEEEE--CC---------SCHHHHHHHHHHHC-------CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred cC---CEEEE--CC---------CCHHHHHHHHHHhc-------CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 12 34442 21 28999999886443 368999999993 3344555554
|
| >1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.014 Score=54.57 Aligned_cols=12 Identities=0% Similarity=0.130 Sum_probs=8.8
Q ss_pred ceEEcCCcEEcc
Q 010554 406 DAIISHGCFLRE 417 (507)
Q Consensus 406 ~siIg~gc~I~~ 417 (507)
+..||++|+|+.
T Consensus 29 ~i~IG~~~~I~~ 40 (209)
T 1mr7_A 29 NVEVGEYSYYDS 40 (209)
T ss_dssp TEEECTTCEEEC
T ss_pred CeEECCCcEEcC
Confidence 567888888863
|
| >4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.022 Score=53.75 Aligned_cols=12 Identities=0% Similarity=0.257 Sum_probs=8.5
Q ss_pred ceEEcCCcEEcc
Q 010554 406 DAIISHGCFLRE 417 (507)
Q Consensus 406 ~siIg~gc~I~~ 417 (507)
+..||++++|++
T Consensus 34 ~i~IG~~t~i~~ 45 (219)
T 4e8l_A 34 NILVGEYSYYDS 45 (219)
T ss_dssp SEEECTTCEEEC
T ss_pred CEEECCccEEcC
Confidence 567777777763
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=83.41 E-value=11 Score=34.32 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=65.8
Q ss_pred cceeecCcchhhHHHHHHHHhcCCC--EEEEEeccCchHHHHHHHhcccCCCcccCCCeEEEecCccCCCCCCCCcccCh
Q 010554 118 PAVPVAGCYRLIDIPMSNCINSGIN--KIFVLTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGT 195 (507)
Q Consensus 118 ~LlPI~g~ypLId~~L~~l~~~Gi~--~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V~vl~~~q~~~~~~~~~~~Gt 195 (507)
-.+|.-|....|..+|+.+.+.... +|+|+-....+...+.+. .+.. ++ ..+.++.. +. .|.
T Consensus 9 ViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~-~~~~---~~--~~i~~i~~-~n---------~G~ 72 (240)
T 3bcv_A 9 VIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICD-DYAA---QY--PNIKVIHK-KN---------AGL 72 (240)
T ss_dssp EEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHH-HHHH---HC--SSEEEEEC-CC---------CCH
T ss_pred EEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHH-HHHh---hC--CCEEEEEC-CC---------CCh
Confidence 3566667657889999998876443 566665433332222221 1110 01 12666642 11 488
Q ss_pred HHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCC-HHHHHHHHHHcCCceEE
Q 010554 196 ADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMD-YMDFIQSHVDRDADITI 246 (507)
Q Consensus 196 a~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~d-l~~ll~~h~~~~a~~tl 246 (507)
+.|...+....+ .+.++++.+|.+...+ +..+++...+.+.++.+
T Consensus 73 ~~a~N~g~~~a~------g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~ 118 (240)
T 3bcv_A 73 GMACNSGLDVAT------GEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVF 118 (240)
T ss_dssp HHHHHHHHHHCC------SSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcC------CCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEE
Confidence 888887765542 5889999999988777 57777777766666543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 507 | ||||
| d1yp2a2 | 307 | c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr | 5e-67 | |
| d1fxoa_ | 292 | c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa | 5e-30 | |
| d1lvwa_ | 295 | c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri | 4e-25 | |
| d1yp2a1 | 135 | b.81.1.4 (A:317-451) Glucose-1-phosphate adenylylt | 1e-24 | |
| d1mc3a_ | 291 | c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | 2e-23 | |
| d1tzfa_ | 259 | c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf | 2e-18 | |
| d2icya2 | 378 | c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 | 9e-18 | |
| d1jyka_ | 229 | c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer | 3e-07 | |
| d1g97a2 | 250 | c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate | 2e-06 | |
| d2cu2a2 | 268 | c.68.1.20 (A:1-268) Putative mannose-1-phosphate g | 7e-05 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 216 bits (550), Expect = 5e-67
Identities = 165/308 (53%), Positives = 217/308 (70%), Gaps = 9/308 (2%)
Query: 90 VDP---KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFV 146
+DP ++V IILGGGAGT+L+PLT + A PAVP+ YRLIDIP+SNC+NS I+KI+V
Sbjct: 4 LDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV 63
Query: 147 LTQFNSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVF 206
LTQFNSASLNRH++R Y N + + + A Q E+ +WFQGTADAVRQ+ W+F
Sbjct: 64 LTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP-DWFQGTADAVRQYLWLF 122
Query: 207 EDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDN 266
+ + IL GDHLYRMDY FIQ+H + DADIT++ + E RA+ +GL+KID
Sbjct: 123 ---EEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE 179
Query: 267 MGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRY 326
GRI +FAEKP G L+AM+VDT++LG + A++ P++ASMG+YV KDV+ LLR ++
Sbjct: 180 EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKF 239
Query: 327 PTSNDFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTK-ESPAFHFYDPK 384
P +NDFGSE+IP A VQAY++ YWEDIGTI++FY AN+ +TK P F FYD
Sbjct: 240 PGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRS 299
Query: 385 TPFYTSPR 392
P YT PR
Sbjct: 300 APIYTQPR 307
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 116 bits (293), Expect = 5e-30
Identities = 60/277 (21%), Positives = 100/277 (36%), Gaps = 48/277 (17%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P TL + +PV +I P+S + +GI +I +++
Sbjct: 4 GIILAGGSGTRLHPATLAISKQLLPVYD-KPMIYYPLSTLMLAGIREILIISTPQDTPRF 62
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ G+G+N+G +++ A Q G A A N +
Sbjct: 63 QQ----LLGDGSNWG---LDLQYAVQ-------PSPDGLAQAFLIGES-----FIGNDLS 103
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
+L + Y D+ + + S R ++ V YG+V+ D G+ EK
Sbjct: 104 ALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHV--LDPERYGVVEFDQGGKAISLEEK 161
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS--NDFGS 334
P K Y A G+Y + + V + R P+ +
Sbjct: 162 PLEP--------------------KSNY-AVTGLYFYDQQV-VDIARDLKPSPRGELEIT 199
Query: 335 EIIPAAIMEHDVQAYIFRD--YWEDIGTIKSFYEANM 369
++ A + + I W D GT S EA
Sbjct: 200 DVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 236
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 103 bits (257), Expect = 4e-25
Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 56/285 (19%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNS 152
++ I+L GG+GT+L+P+T + +P+ +I P+S + +GI I +++
Sbjct: 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRD 60
Query: 153 ASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN- 211
L R G+G+ FG F + + +G ADA K+
Sbjct: 61 LPLYRD----LLGDGSQFGVRFSYRV----------QEEPRGIADAFIV-------GKDF 99
Query: 212 -RNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
+ + +L + Y + + ++ + I V +G+V+ D+ GR+
Sbjct: 100 IGDSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYV--RDPRPFGVVEFDSEGRV 157
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330
EK K Y G+Y + V+ R +
Sbjct: 158 ISIEEK--------------------PSRPKSNY-VVPGLYFYDNQVVEIARRIE---PS 193
Query: 331 DFGSEIIPAAIMEH------DVQAYIFRDYWEDIGTIKSFYEANM 369
D G I + E+ V+ W D GT EA+
Sbjct: 194 DRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS 238
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 135 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 97.1 bits (241), Expect = 1e-24
Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 20/135 (14%)
Query: 393 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV--------------------DYYQTES 432
+LPP+K+ + + D++I GC ++ C + HS+V DYY+T++
Sbjct: 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDA 60
Query: 433 EIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI 492
+ L A+G VPIG+G+N I+ IIDKN +IG +V I+NKD+VQEA R G++I+SGI
Sbjct: 61 DRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGI 120
Query: 493 TIIMEKATIEDGMVI 507
+++ A I G++I
Sbjct: 121 VTVIKDALIPSGIII 135
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Score = 97.9 bits (244), Expect = 2e-23
Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 52/278 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
IIL GG+GT+L P+T + +P+ +I P+S + +GI +I ++T
Sbjct: 4 GIILAGGSGTRLHPITRGVSKQLLPIYD-KPMIYYPLSVLMLAGIREILIITTPEDKGYF 62
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKN--RNI 214
+ G+G+ FG +++ A Q + G A A +
Sbjct: 63 QR----LLGDGSEFG---IQLEYAEQPSPD-------GLAQAFII-------GETFLNGE 101
Query: 215 ENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFA 274
+ +L + + + ++ R T+ V +G+V+ D+ R
Sbjct: 102 PSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV--MDPERFGVVEFDDNFRAISLE 159
Query: 275 EKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN--DF 332
EK + K + A G+Y + V + + P+
Sbjct: 160 EK--------------------PKQPKSNW-AVTGLYFYDSKV-VEYAKQVKPSERGELE 197
Query: 333 GSEIIPAAIMEHDVQAYIFR--DYWEDIGTIKSFYEAN 368
+ I + ++ + W D GT S EA+
Sbjct: 198 ITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAS 235
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Score = 82.4 bits (202), Expect = 2e-18
Identities = 33/273 (12%), Positives = 73/273 (26%), Gaps = 33/273 (12%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
A+IL GG GT+L T+ P V + G ++ M GI + + +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGG-KPILWHIMKMYSVHGIKDFIICCGYKGYVIK 63
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ A + + E T D+ + A+ +
Sbjct: 64 EYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDDE 123
Query: 217 VAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAE 275
+ +D I H T++ +G + I + +
Sbjct: 124 AFLFTYGDGVADLDIKATIDFHKAHGKKATLTA----TFPPGRFGALDIQAGQVRSFQEK 179
Query: 276 KPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFGSE 335
+ + G +V V+ + + E
Sbjct: 180 PK-----------------------GDGAMINGGFFVLNPSVIDLIDNDAT----TWEQE 212
Query: 336 IIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEAN 368
+ + ++ A+ +W+ + T++
Sbjct: 213 PLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLE 245
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 82.7 bits (204), Expect = 9e-18
Identities = 22/206 (10%), Positives = 59/206 (28%), Gaps = 24/206 (11%)
Query: 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCI------NSGINKIFV 146
+ + L GG GT + + V +D+ + + + +
Sbjct: 73 DKLVVLKLNGGLGTT---MGCTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLM 129
Query: 147 LTQFNSASLNRHIARTYFGNGT-----------NFGDGFVEVLAATQTPGESGKNWFQGT 195
+ ++ + + N D FV + +T E + G
Sbjct: 130 NSFNTHDDTHKIVEKYTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGW--YPPGH 187
Query: 196 ADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253
D + ++ E V + D+L + + ++ + + +
Sbjct: 188 GDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLTILKHLIQNKNEYCMEVTPKTL 247
Query: 254 SRASDYGLVKIDNMGRIAQFAEKPSG 279
+ L+ + ++ + A+ P
Sbjct: 248 ADVKGGTLISYEGKVQLLEIAQVPDE 273
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 31/279 (11%), Positives = 69/279 (24%), Gaps = 66/279 (23%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL G GT+L PLT V V LI+ + GIN I ++ + +
Sbjct: 6 AIILAAGLGTRLRPLTENTPKALVQVNQ-KPLIEYQIEFLKEKGINDIIIIVGYLKEQFD 64
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+ A + K +
Sbjct: 65 YLKEKYGV-------------------------RLVFNDKYADYNNFYSLYLVKEELANS 99
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
I ++L++ + + + + + + ++
Sbjct: 100 YVIDADNYLFKNMFRNDLTRSTYFSVYREDCT---------NEWFLVYGDDYKVQDIIVD 150
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRW------RYPTSN 330
GV + K++ + +
Sbjct: 151 SKAGR------------------------ILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 186
Query: 331 DFGSEIIPAAIMEHDVQAY-IFRDYWEDIGTIKSFYEAN 368
+ ++ I E DV + + +I +++ + +
Sbjct: 187 LYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 225
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Score = 47.0 bits (110), Expect = 2e-06
Identities = 41/267 (15%), Positives = 75/267 (28%), Gaps = 50/267 (18%)
Query: 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLN 156
AIIL G GT++ VAG +++ + K + + +
Sbjct: 4 AIILAAGKGTRMKSDL---PKVLHKVAGIS-MLEHVFRSVGAIQPEKTVTVVGHKAELVE 59
Query: 157 RHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIEN 216
+A ++ GT AV + E
Sbjct: 60 EVLAGQTEFV---------------------TQSEQLGTGHAVMMTEPILEG--LSGHTL 96
Query: 217 VAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEK 276
V + + I H++ TI A YG + ++ + + E+
Sbjct: 97 VIAGDTPLITGESLKNLIDFHINHKNVATILTAET--DNPFGYGRIVRNDNAEVLRIVEQ 154
Query: 277 PSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF---KLLRWRYPTSNDFG 333
+ K + G YVF + LF K + +
Sbjct: 155 K-----------------DATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI 197
Query: 334 SEIIPAAIME-HDVQAYIFRDYWEDIG 359
+++I V AY +D+ E +G
Sbjct: 198 TDVIGIFRETGEKVGAYTLKDFDESLG 224
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Score = 42.3 bits (98), Expect = 7e-05
Identities = 32/279 (11%), Positives = 77/279 (27%), Gaps = 22/279 (7%)
Query: 94 NVAAIILGGGAGTKLFPLTLRAATP--AVPVAGCYRLIDIPMSNCIN-SGINKIFVLTQF 150
A+++ GG G +L+PL+ R P +P+ L++ + + + +
Sbjct: 2 KTYALVMAGGRGERLWPLS-REDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRR 60
Query: 151 NSASLNRHIARTYFGNGTNFGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAK 210
+ ++ R A G + +V +D
Sbjct: 61 DQEAVARPYADGIRLLLEPLGRDTAGA---VLLGVAEALKEGAERLLVLPADHYVGDDEA 117
Query: 211 NRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRI 270
R + + + + I + R + V+ +
Sbjct: 118 YREALATMLEAAEEGFVVALGLRPTRPETEYGYIRLGPREGAWYRGEGF--VEKPSYAEA 175
Query: 271 AQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKK-DVLFKLLRWRYPTS 329
++ K N + + + + A + + ++ L
Sbjct: 176 LEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLP------ 229
Query: 330 NDFGSEIIPAAIMEH--DVQAYIFRDYWEDIGTIKSFYE 366
I +ME V+ + R W+D+G ++
Sbjct: 230 ----KISIDYGVMEKAERVRVVLGRFPWDDVGNWRALER 264
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 507 | |||
| d1yp2a2 | 307 | Glucose-1-phosphate adenylyltransferase small subu | 100.0 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 100.0 | |
| d1mc3a_ | 291 | RffH {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1lvwa_ | 295 | RmlA (RfbA) {Archaeon Methanobacterium thermoautot | 100.0 | |
| d1tzfa_ | 259 | Glucose-1-phosphate cytidylyltransferase RfbF {Sal | 99.98 | |
| d2cu2a2 | 268 | Putative mannose-1-phosphate guanylyl transferase | 99.97 | |
| d1jyka_ | 229 | CTP:phosphocholine cytidylytransferase LicC {Strep | 99.96 | |
| d1g97a2 | 250 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.94 | |
| d2oi6a2 | 248 | N-acetylglucosamine 1-phosphate uridyltransferase | 99.91 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 99.78 | |
| d1i52a_ | 225 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.67 | |
| d1w77a1 | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.59 | |
| d1vgwa_ | 226 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.56 | |
| d1vpaa_ | 221 | 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) | 99.52 | |
| d2dpwa1 | 231 | Uncharacterized protein TTHA0179 {Thermus thermoph | 99.34 | |
| d1vica_ | 255 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.3 | |
| d1vh1a_ | 246 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.28 | |
| d1h7ea_ | 245 | CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn | 99.28 | |
| d1e5ka_ | 188 | Molybdenum cofactor biosynthesis protein MobA {Esc | 99.11 | |
| d1eyra_ | 225 | CMP acylneuraminate synthetase {Neisseria meningit | 99.07 | |
| d2icya2 | 378 | UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c | 99.07 | |
| d1w55a1 | 205 | IspD/IspF bifunctional enzyme, CDP-me synthase dom | 98.93 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.89 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 98.85 | |
| d1fxja1 | 78 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.63 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.6 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.48 | |
| d1qrea_ | 210 | gamma-carbonic anhydrase {Archaeon Methanosarcina | 98.47 | |
| d1yp2a1 | 135 | Glucose-1-phosphate adenylyltransferase small subu | 98.45 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.38 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.33 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.32 | |
| d1j2za_ | 259 | UDP N-acetylglucosamine acyltransferase {Helicobac | 98.32 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 98.3 | |
| d2jf2a1 | 262 | UDP N-acetylglucosamine acyltransferase {Escherich | 98.3 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 98.2 | |
| d1jv1a_ | 501 | UDP-N-acetylglucosamine pyrophosphorylase {Human ( | 98.14 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 98.13 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 98.1 | |
| d3bswa1 | 193 | Acetyltransferase PglD {Campylobacter jejuni [TaxI | 98.08 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 97.96 | |
| d1xhda_ | 172 | Putative acetyltransferase/acyltransferase BC4754 | 97.94 | |
| d1krra_ | 200 | Galactoside acetyltransferase {Escherichia coli [T | 97.82 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 97.81 | |
| d1g97a1 | 196 | N-acetylglucosamine 1-phosphate uridyltransferase | 97.7 | |
| d1v3wa_ | 173 | Ferripyochelin binding protein {Archaeon Pyrococcu | 97.69 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 97.57 | |
| d3tdta_ | 274 | Tetrahydrodipicolinate-N-succinlytransferase, THDP | 97.57 | |
| d1ocxa_ | 182 | Maltose O-acetyltransferase {Escherichia coli [Tax | 97.43 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 97.32 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 97.32 | |
| d2oi6a1 | 201 | N-acetylglucosamine 1-phosphate uridyltransferase | 96.67 | |
| d1mr7a_ | 203 | Xenobiotic acetyltransferase {Enterococcus faecium | 96.54 | |
| d1ssqa_ | 241 | Serine acetyltransferase {Haemophilus influenzae [ | 96.54 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 96.54 | |
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [Ta | 96.07 | |
| d1xata_ | 208 | Xenobiotic acetyltransferase {Pseudomonas aerugino | 95.65 |
| >d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=3.2e-46 Score=373.36 Aligned_cols=296 Identities=58% Similarity=1.040 Sum_probs=244.5
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCC-Cccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGN-GTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~-~~~~ 170 (507)
++++.|||||||.||||+|||..+|||||||+|++|||+|+|++|.++||++|+|+++++.+++.+|+.+.+..+ ....
T Consensus 9 ~~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~ 88 (307)
T d1yp2a2 9 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 88 (307)
T ss_dssp HHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC-------
T ss_pred CCceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhccccccccccc
Confidence 467999999999999999999999999999998669999999999999999999999999999999998776221 1111
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
..+..+++...+... ...|+.|++++++.+.+++++ ...++|+|++||++++.|+..+++.|+.+++++++.+..
T Consensus 89 ~~~~~~~~~~~~~~~--~~~~~~g~~~ai~~~~~~i~~---~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~ 163 (307)
T d1yp2a2 89 NEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALP 163 (307)
T ss_dssp -CCEEEEEESCSSTT--SCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEE
T ss_pred ccccceeeceeeecc--ccccccchhHHHHHhHHhhhc---cccceEEEecCcceeccchhhhhhhhhhccccceEEEEe
Confidence 122334444444332 235678999999999999874 345789999999999999999999999999999999888
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
++.++...||++.+|++|+|..|.|||.......+..+...+............++++|+|+|++++|..+++...+...
T Consensus 164 ~~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~ 243 (307)
T d1yp2a2 164 MDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 243 (307)
T ss_dssp ECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCC
T ss_pred cccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhcccccc
Confidence 77666778999999999999999999998877777777777777665555567899999999999999988887777778
Q ss_pred chhhhhHHhhhhc-CcEEEEEeccEEEecCCHHHHHHHHHHhhccC-CCccccCCCCCcccCCC
Q 010554 331 DFGSEIIPAAIME-HDVQAYIFRDYWEDIGTIKSFYEANMALTKES-PAFHFYDPKTPFYTSPR 392 (507)
Q Consensus 331 d~~~dil~~li~~-~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~-~~~~~~~~~~~i~~~~~ 392 (507)
+|..++++.++++ .+|++|.++|||.|||||++|++||++++++. +.+.+|+++++|||+++
T Consensus 244 ~~~~d~i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~~~~~~~~~~~~~~~i~~~~~ 307 (307)
T d1yp2a2 244 DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPR 307 (307)
T ss_dssp CTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCC
T ss_pred chHHHHHHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhcCCCchhhccCCCCCccCCCC
Confidence 8889999998876 68999999999999999999999999999876 55689999999999864
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=4.9e-41 Score=333.22 Aligned_cols=234 Identities=24% Similarity=0.385 Sum_probs=196.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccC-chHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFN-SASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~-~~~l~~~l~~~~~~~~~~~~~ 172 (507)
+++|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++|+++|+|++++. .+.+.+++ +++.+++
T Consensus 1 k~KavILAgG~GtRl~plT~~~pKpllpi~gk-PiI~~~l~~l~~~Gi~ei~ii~~~~~~~~i~~~~-----~~~~~~g- 73 (292)
T d1fxoa_ 1 KRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLL-----GDGSNWG- 73 (292)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH-----TTSGGGT-
T ss_pred CcEEEEECCCCCCcCChhhcCCCcccCEECCE-ehHHHHHHHHHHCCCCEEEEEeCcCCHHHHHHHh-----ccccccC-
Confidence 46999999999999999999999999999999 9999999999999999999888755 45555555 3344555
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+++.+..|. +++|||+|+..+.+++++ .+.|+++++|+++++|+.+++++|.++++.+||++.+++
T Consensus 74 --~~I~y~~q~-------~~~Gta~ai~~a~~~i~~-----~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~ 139 (292)
T d1fxoa_ 74 --LDLQYAVQP-------SPDGLAQAFLIGESFIGN-----DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVL 139 (292)
T ss_dssp --CEEEEEECS-------SCCCGGGHHHHTHHHHTT-----SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECS
T ss_pred --eEEEEccCC-------CCCcHHHHHHhhhhhcCC-----CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECC
Confidence 333332342 357999999999999862 456788899999999999999999999999999999997
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CC
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~ 330 (507)
+ |++||++.+|++|+++.|.|||..+. ++++.+|+|+|+++++. +++...+. .+
T Consensus 140 ~--p~~yGV~~~d~~~ki~~~~EKP~~p~---------------------Snla~~G~Y~f~~~~~~-~~~~l~~s~rgE 195 (292)
T d1fxoa_ 140 D--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRGE 195 (292)
T ss_dssp C--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTSS
T ss_pred C--HHHCeEEEEcCCCCEeEEEECCCCCC---------------------CCcEEEEEEEEChHHHH-HHHhCCCCCCCc
Confidence 6 67899999999999999999998653 58999999999999985 56665554 35
Q ss_pred chhhhhHHhhhhcCcEEEEEec-c-EEEecCCHHHHHHHHHHhh
Q 010554 331 DFGSEIIPAAIMEHDVQAYIFR-D-YWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 331 d~~~dil~~li~~~~V~~~~~~-g-yw~dIgt~~~y~~An~~ll 372 (507)
...+|+++.+++++++.++.+. + +|+|+||+++|++|++.+.
T Consensus 196 ~eitD~~~~~l~~~~~~~~~~~~~~~W~D~Gt~~~l~~a~~~v~ 239 (292)
T d1fxoa_ 196 LEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 239 (292)
T ss_dssp CCHHHHHHHHHHTTCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCeEEEEeCCCCEEEeCCCHHHHHHHHHHHH
Confidence 5678999999999998888775 4 6999999999999998764
|
| >d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RffH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-39 Score=321.67 Aligned_cols=233 Identities=22% Similarity=0.342 Sum_probs=193.8
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|.++||++|+|+++++.....+++ ++++.+|+
T Consensus 2 MkaiIlagG~GtRl~p~t~~~pK~llpi~~k-p~i~~~l~~l~~~gi~~i~iv~~~~~~~~~~~~----~~~g~~~g--- 73 (291)
T d1mc3a_ 2 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRL----LGDGSEFG--- 73 (291)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHH----HTTSGGGT---
T ss_pred ccEEEECCcCccccchhhcCCCccccEECCE-ehHHHHHHHHHHcCCCEEEEEeCcccHHHHHHH----hCchHhhC---
Confidence 7999999999999999999999999999999 999999999999999999999998876554333 35566776
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
+.+.+..|.. ++|||+|+..+.+++++ .+.+||+++|++++.++.+++++|.++++++||++.++++
T Consensus 74 i~I~y~~Q~~-------plGta~Ai~~a~~fi~~-----~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~d- 140 (291)
T d1mc3a_ 74 IQLEYAEQPS-------PDGLAQAFIIGETFLNG-----EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD- 140 (291)
T ss_dssp CEEEEEECSS-------CCCSTHHHHHTHHHHTT-----SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC-
T ss_pred cEEEEEECCC-------CCchHHHHHHHHHHhCC-----CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECCC-
Confidence 3443333432 47999999999999862 3446777777889999999999999999899999999987
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CCch
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SNDF 332 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~d~ 332 (507)
|++||++.+|++|+|+.|.|||+.+. ++++++|+|+|+++++. ++++..+. .+.-
T Consensus 141 -P~~yGVve~d~~g~i~~i~EKP~~p~---------------------Sn~a~~GiY~f~~~v~~-~~~~lk~s~rgE~E 197 (291)
T d1mc3a_ 141 -PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGELE 197 (291)
T ss_dssp -CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSCC
T ss_pred -cccCCCceeccCcceeEEEECCCCCC---------------------CCeEEEEEEEeChHHHH-HHhcCCCCCCCcee
Confidence 67899999999999999999998653 48999999999999996 45655443 2233
Q ss_pred hhhhHHhhhhcCcEEEEEec-c-EEEecCCHHHHHHHHHHh
Q 010554 333 GSEIIPAAIMEHDVQAYIFR-D-YWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 333 ~~dil~~li~~~~V~~~~~~-g-yw~dIgt~~~y~~An~~l 371 (507)
.+++++.++++.+...+.+. + +|+|+||+++|++|+..+
T Consensus 198 Itdl~~~~l~~~~~~~~~~~~g~~W~D~Gt~~~l~~a~~~v 238 (291)
T d1mc3a_ 198 ITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEASTFV 238 (291)
T ss_dssp HHHHHHHHHHTTCEEEEECCTTCEEEECCSHHHHHHHHHHH
T ss_pred ehHHHHHHHHcCCceEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 67889999988887777664 4 699999999999999865
|
| >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=100.00 E-value=6.2e-34 Score=283.46 Aligned_cols=235 Identities=22% Similarity=0.340 Sum_probs=188.6
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|..+|+++++|+++++...+.+++. .+...++
T Consensus 2 ~~MkavIlagG~GtRl~p~t~~~PK~ll~i~~k-pii~~~l~~l~~~g~~~i~Iv~~~~~~~~~~~~~----~~~~~~~- 75 (295)
T d1lvwa_ 2 AHMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLL----GDGSQFG- 75 (295)
T ss_dssp CSCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHH----TTSGGGT-
T ss_pred CCcEEEEECCCCcccCCcccCCCCcccCeECCE-EHHHHHHHHHHHCCCCeEEEEeCcccHHHHHHHh----ccchhcC-
Confidence 479999999999999999999999999999999 9999999999999999999999988765544332 2222333
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
..++++. |. .++|||+||..+..++++ ++.++++++|++++.++..++..|.+.+.++|+.+.+++
T Consensus 76 ~~i~~v~--e~-------~~~gta~Al~~a~~~l~~-----~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~ 141 (295)
T d1lvwa_ 76 VRFSYRV--QE-------EPRGIADAFIVGKDFIGD-----SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVR 141 (295)
T ss_dssp SEEEEEE--CS-------SCCCGGGHHHHTHHHHTT-----SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECS
T ss_pred CEEEEEE--CC-------CCCCHHHHHHHHHHHcCC-----CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcC
Confidence 1244443 22 136999999999988852 456888888889999999999999999999999999887
Q ss_pred CCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC--CC
Q 010554 253 ESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--SN 330 (507)
Q Consensus 253 ~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--~~ 330 (507)
+ +.+||++.++++++|..|.|||..+. ++++++|+|+|++++|. +++...+. ..
T Consensus 142 ~--~~~yG~i~~~~~~~v~~~~EKp~~~~---------------------s~~~~~Giy~~n~~if~-~~~~~~~~~~~e 197 (295)
T d1lvwa_ 142 D--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDRGE 197 (295)
T ss_dssp C--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTTSC
T ss_pred C--CccccEEEECCCCcEEEEeecccCcc---------------------cceeecceEEECHHHHH-HHHhcCCCcCCC
Confidence 6 56799999999999999999997542 36899999999999985 44443322 23
Q ss_pred chhhhhHHhhhhcCcEEEE--EeccEEEecCCHHHHHHHHHHh
Q 010554 331 DFGSEIIPAAIMEHDVQAY--IFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 331 d~~~dil~~li~~~~V~~~--~~~gyw~dIgt~~~y~~An~~l 371 (507)
....++++.+++......+ ..+.+|.|+||+++|.+|+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~Digt~~~l~~~s~~i 240 (295)
T d1lvwa_ 198 LEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASSFI 240 (295)
T ss_dssp CCHHHHHHHHHHTTCEEEEEECTTCEECCCSSHHHHHHHHHHH
T ss_pred eeccchHHHHHHhCCCeEEEcCCCcEEeCCCChHHHHHHHHHH
Confidence 4456788888877655444 4457899999999999999875
|
| >d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: Glucose-1-phosphate cytidylyltransferase RfbF species: Salmonella typhimurium [TaxId: 90371]
Probab=99.98 E-value=2.8e-31 Score=256.24 Aligned_cols=236 Identities=17% Similarity=0.273 Sum_probs=176.2
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcc-cCCCcc----
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTY-FGNGTN---- 169 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~-~~~~~~---- 169 (507)
.+|||||||.||||+|+|.++||||+||+|+ |||+|+|++|.++|+++|+|+++|.++++.+|+...+ +.....
T Consensus 3 ~kAiILAAG~GtRl~~lT~~~PK~Ll~i~gk-plI~~~i~~l~~~gi~~i~iv~gy~~~~i~~~~~~~~~~~~~i~~~~~ 81 (259)
T d1tzfa_ 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 81 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEEGG
T ss_pred ceEEEECCCccccCChhhCCCCccceEECCE-EHHHHHHHHHHHcCCCeeeeccchhHHHHHHHHhcchhccccccchhc
Confidence 5899999999999999999999999999999 9999999999999999999999999999999996443 111000
Q ss_pred ----------cCCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHH
Q 010554 170 ----------FGDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVD 239 (507)
Q Consensus 170 ----------~~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~ 239 (507)
.....+.++.... ..++++++..+.+.+. ..++|+++++|.+++.++.++++.|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~ 147 (259)
T d1tzfa_ 82 ENRMEVHHKRVEPWNVTLVDTGD---------SSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKA 147 (259)
T ss_dssp GTEEEETTCCCCCCEEEEEECCS---------SCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHH
T ss_pred cccchhhhccccccceeEEeccc---------cccccchhhhhhhhcc-----CCCceEEeccccccccchhhhhhhhcc
Confidence 0011233333221 3689999988866553 357899999999999999999999999
Q ss_pred cCCceEEEEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHH
Q 010554 240 RDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLF 319 (507)
Q Consensus 240 ~~a~~tl~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~ 319 (507)
.+..++...... .+.++.+... .+++..+.+.+... +++.++|+|+++++++.
T Consensus 148 ~~~~~~~~~~~~----~~~~~~~~~~-~~~i~~~~~~~~~~----------------------~~~~~~G~y~~~~~~~~ 200 (259)
T d1tzfa_ 148 HGKKATLTATFP----PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID 200 (259)
T ss_dssp HCCSEEEEEECC----CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG
T ss_pred cccceeeccccc----cccCCceecc-cceEEeeeeccccc----------------------eeeecceeccccchhhh
Confidence 888877665432 3456665554 45677776655422 36789999999999874
Q ss_pred HHHHhhCCCCCchhhhhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhhccCC
Q 010554 320 KLLRWRYPTSNDFGSEIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALTKESP 376 (507)
Q Consensus 320 ~ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll~~~~ 376 (507)
.+ + .....+..++++.+++++++++|.++|||.||||++||..+|..+.+..+
T Consensus 201 ~i-~---~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~~~~~~~~ 253 (259)
T d1tzfa_ 201 LI-D---NDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKA 253 (259)
T ss_dssp GC-C---STTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHHTTCC
T ss_pred hc-c---cCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHHHHHcCCC
Confidence 32 2 23455667899999999999999999999999999999999998887543
|
| >d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: mannose-1-phosphate guanylyl transferase domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=1.1e-30 Score=256.25 Aligned_cols=234 Identities=20% Similarity=0.314 Sum_probs=167.4
Q ss_pred ceEEEEEcCCCCCcccCC-ccCCCccceeec-CcchhhHHHHHHHHh-cCCCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 94 NVAAIILGGGAGTKLFPL-TLRAATPAVPVA-GCYRLIDIPMSNCIN-SGINKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PL-T~~~PK~LlPI~-g~ypLId~~L~~l~~-~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
++.|||||||.||||+|| |+.+||||+||. |+ |||+|+++++.+ .++++++|++++..+.+.++. ..+
T Consensus 2 Ki~aVILAGG~GtRL~PlS~~~~PK~ll~i~g~k-~ll~~~i~rl~~~~~~~~i~i~~~~~~~~~~~~~-----~~~--- 72 (268)
T d2cu2a2 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEAVARPY-----ADG--- 72 (268)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGG-----CSS---
T ss_pred CceEEEecCCCcccCCCcccCCCCceeeecCCCC-CHHHHHHHHhhCcCCccchhhhhhHHHHHHhhhh-----ccc---
Confidence 356999999999999999 678999999985 57 999999999887 477899999999887665432 221
Q ss_pred CCCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCH--HHHHHH---HHHcCCceE
Q 010554 171 GDGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDY--MDFIQS---HVDRDADIT 245 (507)
Q Consensus 171 ~~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl--~~ll~~---h~~~~a~~t 245 (507)
+.++...+ .+||++|+..+...+.. ...+.|+|++||++++.++ ...+.. |.+.+..+|
T Consensus 73 ----~~ii~E~~---------~~~t~~a~~~~~~~~~~---~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~ 136 (268)
T d2cu2a2 73 ----IRLLLEPL---------GRDTAGAVLLGVAEALK---EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVA 136 (268)
T ss_dssp ----SEEEEESS---------CCHHHHHHHHHHHHHHH---HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ----cceeeeee---------cCCcccchhhHHHHHhc---cCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEe
Confidence 23332222 26999999988765542 2468899999999998775 333443 224556666
Q ss_pred EEEEEcCCCCCccceEEEECCCC----cEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHH
Q 010554 246 ISCAAVGESRASDYGLVKIDNMG----RIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKL 321 (507)
Q Consensus 246 l~~~~~~~~~~~~~g~v~id~~g----rV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~l 321 (507)
+...+... +..||++..++++ +|..|.|||.....+.+ ....+++|+|+|+|++++|.+.
T Consensus 137 ~~~~~~~~--~~~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~--------------~~~~~~~N~Giy~f~~~~l~~~ 200 (268)
T d2cu2a2 137 LGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEY--------------IRKGYVWNGGVFAFAPATMAEL 200 (268)
T ss_dssp EEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHH--------------HHTTCEEEEEEEEECHHHHHHH
T ss_pred eecccccc--ccccceEEeccccccchhhheeecccchhhhhhh--------------hccCcccchhhhhcchHHHHHH
Confidence 66655444 5689999987543 79999999986543211 1124789999999999998777
Q ss_pred HHhhCCCC---------CchhhhhHHhh--------h--hcCcEEEEEeccEEEecCCHHHHHHHH
Q 010554 322 LRWRYPTS---------NDFGSEIIPAA--------I--MEHDVQAYIFRDYWEDIGTIKSFYEAN 368 (507)
Q Consensus 322 l~~~~~~~---------~d~~~dil~~l--------i--~~~~V~~~~~~gyw~dIgt~~~y~~An 368 (507)
+++..+.. .....+.++.+ + +..++.++.++++|.||||++++++..
T Consensus 201 ~~~~~p~i~~~~~~~~~~~~~~~~f~~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~ 266 (268)
T d2cu2a2 201 FRRHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF 266 (268)
T ss_dssp HHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhcchHHHHHhhCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence 66554421 11122333321 1 347899999999999999999999765
|
| >d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CTP:phosphocholine cytidylytransferase LicC species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.96 E-value=8.1e-29 Score=235.30 Aligned_cols=219 Identities=17% Similarity=0.200 Sum_probs=163.3
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+|+|||||||.||||+|+|...||||+||+|+ |||+|+++.|.++|+++|+|+++|..+.+ +|+.+.| +
T Consensus 3 ~mkaiIlaaG~GtRl~p~t~~~pK~ll~i~gk-pli~~~i~~l~~~g~~~i~iv~g~~~e~i-~~~~~~~-------~-- 71 (229)
T d1jyka_ 3 RVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQF-DYLKEKY-------G-- 71 (229)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGG-THHHHHH-------C--
T ss_pred ceeEEEECCCCcccCCccccCCCcceeEECCE-EHHHHHHHHHHHhCCcccccccccchhhh-hhhhhhc-------c--
Confidence 58899999999999999999999999999999 99999999999999999999999998887 5555433 2
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
++++...+. ...||++++..+.+.++ ++|++.++|++++..+.+ +... ..+....+.+
T Consensus 72 -i~i~~~~~~-------~~~Gt~~sl~~a~~~l~-------~~~ii~~dd~~~~~~~~~----~~~~---~~~~~~~~~~ 129 (229)
T d1jyka_ 72 -VRLVFNDKY-------ADYNNFYSLYLVKEELA-------NSYVIDADNYLFKNMFRN----DLTR---STYFSVYRED 129 (229)
T ss_dssp -CEEEECTTT-------TTSCTHHHHHTTGGGCT-------TEEEEETTEEESSCCCCS----CCCS---EEEEECEESS
T ss_pred -ccccccccc-------cccccccccccchhhhc-------ccccccccccccccchhh----hhhc---cccceeeeee
Confidence 344433332 13699999998876553 678888777776654432 1112 2333333333
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHH---HhhCC---
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLL---RWRYP--- 327 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll---~~~~~--- 327 (507)
+.+++.+..+++++|..+.++|.. ..+.+|+|+|++.....+. +....
T Consensus 130 --~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~ 183 (229)
T d1jyka_ 130 --CTNEWFLVYGDDYKVQDIIVDSKA------------------------GRILSGVSFWDAPTAEKIVSFIDKAYVSGE 183 (229)
T ss_dssp --CSSCCEEEECTTCBEEEEECCCSS------------------------EEBCCSEEEECHHHHHHHHHHHHHHHTTTC
T ss_pred --ccccceeEEccCCceeeEEEeccc------------------------ceEEEEEEEEcHHHHHHHHHHHHHhhcccc
Confidence 456888889999999999988753 4567899999987654433 32211
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHh
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~l 371 (507)
....+..+++...+++..++++.+++ .|.+|+|++||.+|+..+
T Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~I~t~edl~~a~~~~ 228 (229)
T d1jyka_ 184 FVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEIL 228 (229)
T ss_dssp CTTCCTTHHHHTTGGGCCEEEEECCTTSEEECCSHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhCCceEEEecCCCEEecCCHHHHHHHHHhh
Confidence 12334456777888889999998886 599999999999998754
|
| >d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.94 E-value=7.3e-26 Score=216.46 Aligned_cols=231 Identities=19% Similarity=0.253 Sum_probs=177.7
Q ss_pred EEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 96 AAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 96 ~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
.|||||||.||||+| .+||||+||+|+ |||+|+++.|.++|+++|+|++++..+.+..+.. . . +
T Consensus 3 ~AIIlAaG~GtRl~~---~~PK~L~~i~Gk-pli~~~l~~l~~~~~~~iivv~~~~~~~~~~~~~-----~--~-----~ 66 (250)
T d1g97a2 3 FAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLA-----G--Q-----T 66 (250)
T ss_dssp EEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHGGGCCSEEEEEECTTHHHHHHHTT-----T--T-----S
T ss_pred EEEEECCCCCCCCCC---CCCceeeEECCe-eHHHHHHHHHHHcCCCeEEEecccccchhhhhcc-----c--c-----c
Confidence 699999999999998 579999999999 9999999999999999999999998876654432 1 1 1
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCHHHHHHHHHHcCCceEEEEEEcCCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDYMDFIQSHVDRDADITISCAAVGES 254 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~ 254 (507)
....... ..||++++..+...+.. ...+.+++..+|.++ ..++..+++.|...++.+++...+...
T Consensus 67 ~~~~~~~---------~~g~~~~~~~a~~~l~~---~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~- 133 (250)
T d1g97a2 67 EFVTQSE---------QLGTGHAVMMTEPILEG---LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN- 133 (250)
T ss_dssp EEEECSS---------CCCHHHHHHTTHHHHTT---CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC-
T ss_pred ccccccc---------ccccchHHHHHHHhhhc---ccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecc-
Confidence 1111111 25999999999888763 223445555555544 567899999999999999988887765
Q ss_pred CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC---CCCc
Q 010554 255 RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP---TSND 331 (507)
Q Consensus 255 ~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~---~~~d 331 (507)
+..||.+..++++.+..+.+++..... ....++..+|+|+|+...|...++.... ....
T Consensus 134 -~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~ 195 (250)
T d1g97a2 134 -PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEY 195 (250)
T ss_dssp -CTTSCEEEECTTCCEEEEECGGGCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSC
T ss_pred -cCCCceEEEeeceEEEEeecccccccc-----------------ccccceeeeeeeecchHHHHHHHHHhccCcchhhH
Confidence 457888888888999999888753321 0124678999999999988887765332 2445
Q ss_pred hhhhhHHhhhhc-CcEEEEEeccEEEe--cCCHHHHHHHHHHhhc
Q 010554 332 FGSEIIPAAIME-HDVQAYIFRDYWED--IGTIKSFYEANMALTK 373 (507)
Q Consensus 332 ~~~dil~~li~~-~~V~~~~~~gyw~d--Igt~~~y~~An~~ll~ 373 (507)
+.+++++.++++ .+|.++.++++|.+ |+|++|+..|+..+.+
T Consensus 196 ~~~~~~~~~~~~g~~V~~~~~~~~~~~~gInt~~dL~~ae~~~~~ 240 (250)
T d1g97a2 196 YITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRR 240 (250)
T ss_dssp CGGGHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHCCCeEEEEEcCCcceecCCCCHHHHHHHHHHHHH
Confidence 677888888775 68999999999976 7799999999877654
|
| >d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.1e-23 Score=199.56 Aligned_cols=231 Identities=15% Similarity=0.216 Sum_probs=160.0
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
+.|++||||||.||||+| .+||||+||+|+ |||+|+|+.+.+.|+++|+|++++..+.+.++.. ..
T Consensus 1 ~~MkvIILAAG~GtRm~~---~~PKpli~i~gk-piie~~i~~l~~~~~~~iiiv~~~~~~~~~~~~~----~~------ 66 (248)
T d2oi6a2 1 NAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-AMVQHVIDAANELGAAHVHLVYGHGGDLLKQALK----DD------ 66 (248)
T ss_dssp CCEEEEEECCSCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHCC----CT------
T ss_pred CCceEEEECCCCCCCCCC---CCCeeeEEECCh-hHHHHHHHHHHHcCCcEEEeccCcccceeeeecc----cc------
Confidence 469999999999999998 589999999999 9999999999999999999999999877754432 11
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceeccCCHHHHHHH-HHHcCCceEEEEEEc
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYRMDYMDFIQS-HVDRDADITISCAAV 251 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~~dl~~ll~~-h~~~~a~~tl~~~~~ 251 (507)
....+.. . ...||++++..+...+. ...+++++.+|..+.... .+-.. +.......+++....
T Consensus 67 ~~~~~~~---~-------~~~g~~~~~~~~~~~i~-----~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 130 (248)
T d2oi6a2 67 NLNWVLQ---A-------EQLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVE-TLQRLRDAKPQGGIGLLTVKL 130 (248)
T ss_dssp TEEEEEC---S-------SCCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHH-HHHHHHHHCCTTSEEEEEEEC
T ss_pred ccccccc---c-------cCcccHHHHHhhhhhhc-----cccceeeecCccccccch-hHHHHHHHhhccccceeEEEe
Confidence 1122221 1 13699999999876664 356788888888764322 11111 223344445555555
Q ss_pred CCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC---
Q 010554 252 GESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT--- 328 (507)
Q Consensus 252 ~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~--- 328 (507)
.+ +..++.+..+. +....+.+++..... .....+..+|.|.|+.+.|.+.++.....
T Consensus 131 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 190 (248)
T d2oi6a2 131 DD--PTGYGRITREN-GKVTGIVEHKDATDE-----------------QRQIQEINTGILIANGADMKRWLAKLTNNNAQ 190 (248)
T ss_dssp SC--CTTSCEEEEET-TEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTT
T ss_pred cC--Ccccccccccc-CccceeeeccCCChh-----------------hhhhhhhhhhhhccchHHHHHHHHHhhccccc
Confidence 44 55677776654 555555443321110 01236788999999999888777653322
Q ss_pred CCchhhhhHHhhhhc-CcEEEEEeccEEE--ecCCHHHHHHHHHHhhc
Q 010554 329 SNDFGSEIIPAAIME-HDVQAYIFRDYWE--DIGTIKSFYEANMALTK 373 (507)
Q Consensus 329 ~~d~~~dil~~li~~-~~V~~~~~~gyw~--dIgt~~~y~~An~~ll~ 373 (507)
...+.+++++.++++ .+|.++..+++|. .|+||+|+..|...+.+
T Consensus 191 ~e~~ltd~~~~~~~~g~~v~~v~~~~~~e~~gI~t~eDL~~ae~i~~~ 238 (248)
T d2oi6a2 191 GEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQS 238 (248)
T ss_dssp CSCCTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHCCCeEEEEEcCCHHHhCCCCCHHHHHHHHHHHHH
Confidence 233467888888766 6899988888885 48899999999876643
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=99.78 E-value=6.6e-19 Score=153.86 Aligned_cols=115 Identities=42% Similarity=0.833 Sum_probs=104.7
Q ss_pred cCCCceecceeeeceEEcCCcEEccceEeeeeE---EeeccCceEe-eeecCCCc----------------ceeeCCCcE
Q 010554 393 FLPPTKIDNCRIKDAIISHGCFLRECTVEHSIV---DYYQTESEIA-SLLAEGKV----------------PIGVGRNTK 452 (507)
Q Consensus 393 ~~~p~~i~~~~I~~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~-s~l~~g~~----------------~~~Ig~~~~ 452 (507)
|+||+++.++.+++|+||+||+|+++.|++|+| +.+|.++.|. ++++++.+ .+.||++|+
T Consensus 1 ~lPp~~i~~~~i~~s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~ 80 (135)
T d1yp2a1 1 YLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCH 80 (135)
T ss_dssp CCCCEEEEEEEEEEEEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCE
T ss_pred CCCCcccCCCEEEeCEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceE
Confidence 579999999999999999999999888999999 4789999985 77666532 267999999
Q ss_pred EeeeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 453 IRNCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 453 I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
|.+|+|++||+||+|++|.+...+.+.++..+++++++|+++||+|++|++||+|
T Consensus 81 I~~~iIg~~~~IG~g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~vI 135 (135)
T d1yp2a1 81 IKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGIII 135 (135)
T ss_dssp EESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTCBC
T ss_pred eccceecCCCEECCCcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCcCC
Confidence 9999999999999999999999999999999999999999999999999999987
|
| >d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=8.8e-16 Score=144.44 Aligned_cols=217 Identities=12% Similarity=0.080 Sum_probs=132.2
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.|||||||.||||. .++||+|+||+|+ |||+|+++.+.++ ++++|+|+++++...+.++.. .. .
T Consensus 3 ~i~AIILAaG~gtRm~---~~~pK~L~~i~gk-plI~~~i~~~~~~~~i~~Iivv~~~~~~~~~~~~~----~~---~-- 69 (225)
T d1i52a_ 3 DVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPL----AN---H-- 69 (225)
T ss_dssp CEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGGSGG----GG---C--
T ss_pred CEEEEEeCCCcceeCC---CCCCcceeEECCE-EHHHHHHHHHHhCccccccccccchhhhhhhhhhh----cc---c--
Confidence 5789999999999997 5789999999999 9999999999887 689999999887654432221 11 1
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
..+.+.. +. .++.+++..+...+.+ .+.+++..+|..+ ..++..+++..... ....+.+.+
T Consensus 70 ~~v~~~~--~~---------~~~~~sv~~~~~~~~~-----~~~vl~~~~~~p~i~~~~~~~~~~~~~~~-~~~~v~~~~ 132 (225)
T d1i52a_ 70 PQITVVD--GG---------DERADSVLAGLKAAGD-----AQWVLVHDAARPCLHQDDLARLLALSETS-RTGGILAAP 132 (225)
T ss_dssp TTEEEEE--CC---------SSHHHHHHHHHHTSTT-----CSEEEECCTTCTTCCHHHHHHHHGGGGTC-SSCEEEEEE
T ss_pred ccccccc--CC---------cchhHHHHhhhcccCc-----cceeeeeccCCCCCCHHHHHHHHhhhhhc-ccccccccc
Confidence 1244332 21 2577889888776642 4567777788633 33455555555444 344555555
Q ss_pred cCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCC
Q 010554 251 VGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSN 330 (507)
Q Consensus 251 ~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~ 330 (507)
..+. . .......+......++.. .....+.+.|..+.|...+++......
T Consensus 133 ~~d~--~---~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~f~~~~l~~~~~~~~~~~~ 182 (225)
T d1i52a_ 133 VRDT--M---KRAEPGKNAIAHTVDRNG-------------------------LWHALTPQFFPRELLHDCLTRALNEGA 182 (225)
T ss_dssp CCSC--E---EEECTTSSSEEEEECCTT-------------------------CEEEEEEEEEEHHHHHHHHHHHHHTTC
T ss_pred eeec--c---chhcccccccccccchHH-------------------------HHHHhhhhhhhhHHHHHHHHHHHhcCC
Confidence 4331 1 111122333333322111 123346678888877777665432222
Q ss_pred chhhhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHh
Q 010554 331 DFGSEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 331 d~~~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~l 371 (507)
. .+|....+. .+.++..+..+..-..|+||+|+..|+..+
T Consensus 183 ~-~tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl~~Ae~~l 223 (225)
T d1i52a_ 183 T-ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYL 223 (225)
T ss_dssp C-CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHCCCceEEEecCccccCcCCHHHHHHHHHHh
Confidence 2 344333333 246676655432235699999999998754
|
| >d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
Probab=99.59 E-value=1e-14 Score=137.76 Aligned_cols=219 Identities=13% Similarity=0.095 Sum_probs=124.0
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
+++.+||||||.||||. ...||+|+||+|+ |||+|+|+.+.++ .+++|+|+++.....+.+.+. . .+.
T Consensus 3 k~i~~IIlAaG~GtRm~---~~~pK~l~~l~Gk-pli~~~l~~~~~~~~~~~Iivv~~~~~~~~~~~~~----~---~~~ 71 (226)
T d1w77a1 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYE----E---SID 71 (226)
T ss_dssp TCEEEEEECCC----------CCCTTTSEETTE-EHHHHHHHHHHTCTTEEEEEEECCGGGTHHHHTTT----T---SCS
T ss_pred CceEEEEeCCccCccCc---CCCCceeeEECCe-eHHHHHHHHHHhhccccceeeccchhhhhhhhccc----c---ccc
Confidence 56899999999999998 4789999999999 9999999999987 578998888765443332221 1 121
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
..+.+.. . | ..+.++++.++..+. ...+.+++..||.-+ ...+..+++.+.+.++. +...
T Consensus 72 -~~~~~~~--g--g-------~~r~~sv~~~l~~~~----~~~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~~--i~~~ 133 (226)
T d1w77a1 72 -VDLRFAI--P--G-------KERQDSVYSGLQEID----VNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAA--VLGV 133 (226)
T ss_dssp -SEEEEEC--C--C-------SSHHHHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHHHHHHSEE--EEEE
T ss_pred -ccccccc--c--c-------chhhhhhhhhHhhhc----cccccceecccccccccHHHhhhhhhhhhccCce--eecc
Confidence 1244332 1 1 135788888876654 234678888899843 34467888887777653 3333
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
+..+.. .+ ...++......+. ...+..-+-++|+.+.|...++......
T Consensus 134 ~~~d~~--~~----~~~~~~~~~~~~r-------------------------~~~~~~~~p~~f~~~~l~~~~~~~~~~~ 182 (226)
T d1w77a1 134 PAKATI--KE----VNSDSLVVKTLDR-------------------------KTLWEMQTPQVIKPELLKKGFELVKSEG 182 (226)
T ss_dssp ECCSCC--CC----BCTTSCBC-------------------------------CCEEEEEEEEECHHHHHHHHHHHHHSC
T ss_pred ccccce--EE----EccCCceeecccc-------------------------hhhhHHHHHHhHhhHHHHHHHHHHHhcC
Confidence 332211 00 0112222111110 0124445668899988877665432222
Q ss_pred CchhhhhHHhh-hhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 330 NDFGSEIIPAA-IMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 330 ~d~~~dil~~l-i~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
..+ +|....+ ....+|..+..+..-+.|+||+|+..|...|.
T Consensus 183 ~~~-TD~~~l~~~~g~~v~~v~g~~~n~KItt~eDl~~ae~lL~ 225 (226)
T d1w77a1 183 LEV-TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILS 225 (226)
T ss_dssp CCC-CC-CCTTGGGSSCCEEEECCTTCCCCCSHHHHHHHHHHHH
T ss_pred CCc-CcHHHHHHHCCCceEEEECChhhcCcCCHHHHHHHHHHhC
Confidence 222 2211111 23466765544333356999999999987653
|
| >d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Neisseria gonorrhoeae [TaxId: 485]
Probab=99.56 E-value=1.3e-13 Score=129.87 Aligned_cols=218 Identities=10% Similarity=0.083 Sum_probs=119.0
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
++..|||||||.||||. ..+||+|+||+|+ |||+|+++.+.+++ ++.|+|+++.+ +.+.+++...+ ..
T Consensus 2 ~K~iAIIlAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~iivv~~~~-~~~~~~~~~~~-~~----- 70 (226)
T d1vgwa_ 2 RKNIALIPAAGIGVRFG---ADKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPE-DTFADKVQTAF-PQ----- 70 (226)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTT-CSTHHHHHHHC-TT-----
T ss_pred CceEEEEeCCCCcccCC---cCCCeeeeEECCE-EHHHHHHHHHHhCCCccccceecchh-hhhhhhhcccc-cc-----
Confidence 45669999999999996 5789999999999 99999999999885 57777776554 34455554332 11
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhh-hcCCCCeEEEEcCce-ec-cCCHHHHHHHHHHcCCceEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDA-KNRNIENVAILCGDH-LY-RMDYMDFIQSHVDRDADITISC 248 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~-~~~~~~~~lVl~gD~-i~-~~dl~~ll~~h~~~~a~~tl~~ 248 (507)
.+.+.... ....+++..+...+.+. .....+.+++..||. +. ...+..+++.+...+...++ .
T Consensus 71 --~~~~~~g~-----------~~~~~s~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~-~ 136 (226)
T d1vgwa_ 71 --VRVWKNGG-----------QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-A 136 (226)
T ss_dssp --SEEECCCC-----------SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-E
T ss_pred --eeeccccc-----------cccchhhhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceee-c
Confidence 12222111 12334444443333221 112345677888886 33 34578888888877765443 3
Q ss_pred EEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCC
Q 010554 249 AAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPT 328 (507)
Q Consensus 249 ~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~ 328 (507)
.+..+ ..... +++.+....++.... ....-..|..+.|...+....
T Consensus 137 ~~~~~------~~~~~-~~~~i~~~~~r~~~~-------------------------~~~~p~~f~~~~l~~~~~~~~-- 182 (226)
T d1vgwa_ 137 VPVAD------TLKRA-ESGQISATVDRSGLW-------------------------QAQTPQLFQAGLLHRALAAEN-- 182 (226)
T ss_dssp EECCS------CEEEE-SSSBEEEEECCTTEE-------------------------EEEEEEEEEHHHHHHHHHC----
T ss_pred ccccc------cceec-cCCeEEeccchHHHH-------------------------HHHhhhcccHHHHHHHHHHhh--
Confidence 33322 22333 457777665543311 111225667777766555321
Q ss_pred CCchhhhhHHhh-hhcCcEEEEEeccEEEecCCHHHHHHHHHH
Q 010554 329 SNDFGSEIIPAA-IMEHDVQAYIFRDYWEDIGTIKSFYEANMA 370 (507)
Q Consensus 329 ~~d~~~dil~~l-i~~~~V~~~~~~gyw~dIgt~~~y~~An~~ 370 (507)
..++ +|....+ ..+.++..+.-+...+.|+||+|+..|...
T Consensus 183 ~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~l 224 (226)
T d1vgwa_ 183 LGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLL 224 (226)
T ss_dssp --CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHHH
Confidence 1122 2322222 235677766655456789999999998754
|
| >d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=3.7e-13 Score=126.14 Aligned_cols=209 Identities=12% Similarity=0.162 Sum_probs=126.5
Q ss_pred EEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCCCeE
Q 010554 97 AIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGFV 175 (507)
Q Consensus 97 aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~V 175 (507)
|||||||.||||. ..+||+|+||+|+ |||+|+|+.+.++ ++++|+|+++..... ++.+.. . ....+
T Consensus 6 AIILAaG~gtRm~---~~~pK~l~~i~gk-pli~~~i~~~~~~~~~~~Iivv~~~~~~~---~~~~~~-~-----~~~~~ 72 (221)
T d1vpaa_ 6 AILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFE---VVEKRV-F-----HEKVL 72 (221)
T ss_dssp EEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHH---HHHTTC-C-----CTTEE
T ss_pred EEEccCcCcccCC---CCCCcceeEECCE-EHHHHHHHHHHhccccccceEEecchhhh---HHHhhh-c-----ccccc
Confidence 7999999999997 5789999999999 9999999999987 689999998765432 232211 1 11224
Q ss_pred EEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEEcCC
Q 010554 176 EVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAVGE 253 (507)
Q Consensus 176 ~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~~~~ 253 (507)
.+.... .+..+++..+...+.. ...+.++++.||..+ ...+..+++.+.+... .+...+..+
T Consensus 73 ~~~~~~-----------~~~~~s~~~~~~~~~~---~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~--~~~~~~~~d 136 (221)
T d1vpaa_ 73 GIVEGG-----------DTRSQSVRSALEFLEK---FSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD 136 (221)
T ss_dssp EEEECC-----------SSHHHHHHHHHHHHGG---GCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS
T ss_pred cccccc-----------ccccchHHHHHHHHHh---cCCCcEEEeccccccccHHHHHhhhhhhccccc--ccccccccc
Confidence 443211 1445566655555432 345789999999844 3456788888776553 222222221
Q ss_pred CCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCCCchh
Q 010554 254 SRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTSNDFG 333 (507)
Q Consensus 254 ~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~~d~~ 333 (507)
.+...+ +++...+ +. ...+...+-+.|+.+.|....++. .++
T Consensus 137 ------~~~~~~-~~~~~~~---~~-----------------------~~~~~~~~~~~~~~~~l~~~~~~~----~~~- 178 (221)
T d1vpaa_ 137 ------ALVRVE-NDRIEYI---PR-----------------------KGVYRILTPQAFSYEILKKAHENG----GEW- 178 (221)
T ss_dssp ------EEEEEE-TTEEEEE---CC-----------------------TTEEEEEEEEEEEHHHHHHHHTTC----CCC-
T ss_pred ------eeEeec-Cccceec---ch-----------------------HHHHHhhhhhhhhHHHHHHHHHhC----CCC-
Confidence 222222 2222222 11 113556677888888877654432 122
Q ss_pred hhhHHhhh-hcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 334 SEIIPAAI-MEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 334 ~dil~~li-~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
+|.+..+. ...+|..+..+.....|+||+|+..|...+-
T Consensus 179 tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~Ae~llk 218 (221)
T d1vpaa_ 179 ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAR 218 (221)
T ss_dssp SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHH
T ss_pred ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHHHHHHHh
Confidence 33232222 2466766554444457999999988876553
|
| >d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: TTHA0179-like domain: Uncharacterized protein TTHA0179 species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=3.6e-13 Score=126.98 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDG 173 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~ 173 (507)
+..|||||||.|+||++++. .||+|+||+|+ |||+|+++.+.++|+++|+|++++..... .
T Consensus 2 ~~~avIlA~G~~~r~~r~g~-~~K~L~~i~Gk-pli~~~~~~l~~~~~~~vvv~~~~~~~~~--------------~--- 62 (231)
T d2dpwa1 2 RPSAIVLAGGKEAWAERFGV-GSKALVPYRGR-PMVEWVLEALYAAGLSPVYVGENPGLVPA--------------P--- 62 (231)
T ss_dssp CCEEEEECCCBCSGGGTTTC-SBGGGSEETTE-ETHHHHHHHHHHTTCEEEEESCCSSCSSC--------------C---
T ss_pred CceEEEECCCCCCCCCCCCC-CCceeeEECCe-eHHHHHHHHHHhcCCCeEEeeeeccccce--------------e---
Confidence 35899999999999999884 58999999999 99999999999999999988887643110 0
Q ss_pred eEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEEEEEc
Q 010554 174 FVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITISCAAV 251 (507)
Q Consensus 174 ~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~~~~~ 251 (507)
.... . +..|+.++++.++..+ .++++++.||.-+ ...+..+++.+.+ .+..+.+.+.
T Consensus 63 -~~~~---~--------~~~~~~~~v~~al~~~-------~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~ 121 (231)
T d2dpwa1 63 -ALTL---P--------DRGGLLENLEQALEHV-------EGRVLVATGDIPHLTEEAVRFVLDKAPE--AALVYPIVPK 121 (231)
T ss_dssp -SEEE---C--------CCSSHHHHHHHHHHTC-------CSEEEEEETTCTTCCHHHHHHHHHHCCS--CSEEEEEEEH
T ss_pred -eeec---c--------cchHHHHHHHHHHHhh-------cCceEEeeCCCccCCHHHHHHHHHHhhh--cCceEEEEec
Confidence 1111 1 1248999999887655 3789999999833 3446777776543 4445555444
|
| >d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Haemophilus influenzae [TaxId: 727]
Probab=99.30 E-value=1.4e-10 Score=109.96 Aligned_cols=242 Identities=12% Similarity=0.150 Sum_probs=147.3
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
..|||+|-|.++|+.- |.|.+|+|+ |||+|+++.+.++++++|+|.|.. +.+.+... .| +. .
T Consensus 2 ~~~iIpAR~gSkRlp~------Knl~~i~Gk-pLI~~~i~~a~~s~i~~IiVsTd~--~~i~~~~~-~~-------~~-~ 63 (255)
T d1vica_ 2 FTVIIPARFASSRLPG------KPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAK-SF-------GA-E 63 (255)
T ss_dssp CEEEEECCCCCSSSTT------GGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHH-HT-------TC-E
T ss_pred EEEEEecCCCCCCCCC------chhhhhCCc-CHHHHHHHHHHHCCCCeEEEEcCC--cccchhhh-hh-------cc-c
Confidence 4799999999999742 999999999 999999999999999999888854 33433332 22 11 1
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--CCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+.... +.. ..|++.+...+..... ...+.++++.||..+. .++..+++.+.......+.......
T Consensus 64 ~~~~~--~~~-------~~~~~~~~~~~~~~~~----~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 130 (255)
T d1vica_ 64 VCMTS--VNH-------NSGTERLAEVVEKLAI----PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIH 130 (255)
T ss_dssp EEECC--CSS-------CCHHHHHHHHHHHTTC----CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred cceee--ecc-------CCcchhhHHHHHHhhc----cCCceEEEEecchhhhhhhhhhhhhhhcccccccccceeeecc
Confidence 22221 111 1356655554433322 3346788889998553 4578888888888777776665543
Q ss_pred CC---CCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 253 ES---RASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 253 ~~---~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
.. ..........++++++..+...+........... ...........+....|+|+|+++.|..+... .+..
T Consensus 131 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~ 205 (255)
T d1vica_ 131 DAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNL----QDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQW-APTQ 205 (255)
T ss_dssp CHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTC----SCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred chhhccCccceeeeeccCCcccccccccccccchhhhhc----cchhhcccccchheeeeeecccHHHHhhhhcc-CCCh
Confidence 21 1123345567788899888776543211000000 00000111123567889999999998776432 1211
Q ss_pred Cchhh--hhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHhh
Q 010554 330 NDFGS--EIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 330 ~d~~~--dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~ll 372 (507)
..-.+ +.+..+-.+.+|..+..+. .+.||+|++||..|...|-
T Consensus 206 le~~e~le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~ilk 251 (255)
T d1vica_ 206 LENLEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA 251 (255)
T ss_dssp HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHHH
Confidence 00001 1122223456888887765 4789999999999987654
|
| >d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KdsB [TaxId: 562]
Probab=99.28 E-value=1.8e-10 Score=108.92 Aligned_cols=237 Identities=14% Similarity=0.176 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccCCCe
Q 010554 95 VAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFGDGF 174 (507)
Q Consensus 95 ~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 174 (507)
..|||+|-|.++|+.- |+|.+|+|+ |||+|+++.+.++++++|+|.|. .+.+.++.. .+ +. .
T Consensus 2 ~i~iIpAR~gSkrip~------KnL~~i~Gk-pLI~~~i~~a~~s~i~~iiVsTd--~~~i~~~~~-~~-------g~-~ 63 (246)
T d1vh1a_ 2 FVVIIPARYASTRLPG------KPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVE-AA-------GG-E 63 (246)
T ss_dssp CEEEEECCCCCC--CC------TTTCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-HT-------TC-E
T ss_pred EEEEEecCCCCcCCCC------chhhhcCCc-cHHHHHHHHHHHcCCCcEEEEec--Cccccchhh-cc-------cc-c
Confidence 4699999999999842 999999999 99999999999999999999985 445555553 21 21 1
Q ss_pred EEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--CCHHHHHHHHHHcCCceEEEEEEcC
Q 010554 175 VEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAAVG 252 (507)
Q Consensus 175 V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--~dl~~ll~~h~~~~a~~tl~~~~~~ 252 (507)
+.+..... ..|+..+...+.... ....+.++.+.||..+. .++..+++.+.....+....+.+..
T Consensus 64 v~~~~~~~---------~~~~~~~~~~~~~~~----~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 130 (246)
T d1vh1a_ 64 VCMTRADH---------QSGTERLAEVVEKCA----FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIH 130 (246)
T ss_dssp EEECC--------------CHHHHHHHHHHTT----CCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECC
T ss_pred ceeecccc---------cccchHHHHHHHhhc----ccccceeeeeccccccchhhHHHHHhhhhccccccccccccccc
Confidence 22222111 135555544433222 12346788899999653 4578888888888877766666554
Q ss_pred CCCC---ccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 253 ESRA---SDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 253 ~~~~---~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
.... .+..-+..+.+|++..|...+.......... . .......++...|+|+|+++.|...... .++.
T Consensus 131 ~~~~~~~~~~vk~v~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~giy~~~~~~l~~~~~~-~~s~ 201 (246)
T d1vh1a_ 131 NAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAE-------G-LETVGDNFLRHLGIYGYRAGFIRRYVNW-QPSP 201 (246)
T ss_dssp CHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHSS-------C-CCCCCSCCEEEEEEEEEEHHHHHHHHHS-CCCH
T ss_pred chhcccCCCcceeeecccCcccccccccchhhhhhhhh-------h-hhccchhhheecceeeechhhhhhhccC-CCCh
Confidence 3111 1122345677899998876554321100000 0 0001124677899999999998765432 1110
Q ss_pred Cchh--hhhHHhhhhcCcEEEEEeccE-EEecCCHHHHHHHHHHh
Q 010554 330 NDFG--SEIIPAAIMEHDVQAYIFRDY-WEDIGTIKSFYEANMAL 371 (507)
Q Consensus 330 ~d~~--~dil~~li~~~~V~~~~~~gy-w~dIgt~~~y~~An~~l 371 (507)
..-. -|.+..+-.+.+|.++..+.+ ..||+|++||..|...|
T Consensus 202 ~E~~e~le~lR~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k~m 246 (246)
T d1vh1a_ 202 LEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 246 (246)
T ss_dssp HHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHCCCceEEEEecCCCCCCCCCHHHHHHHHhcC
Confidence 0000 122332223578988888764 67999999999987653
|
| >d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase species: Escherichia coli, KpsU [TaxId: 562]
Probab=99.28 E-value=1.6e-10 Score=108.95 Aligned_cols=229 Identities=14% Similarity=0.192 Sum_probs=139.0
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhc-CCCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINS-GINKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~-Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
+..+||+|-|.++||. .|+|++|+|+ |||+|+++++.++ ++++|+|++... .+.+... .+ +
T Consensus 2 k~i~iIpAR~~SkRl~------~Knl~~i~Gk-Pli~~~i~~a~~~~~~d~Iiv~td~~--~i~~~~~-~~-------~- 63 (245)
T d1h7ea_ 2 KAVIVIPARYGSSRLP------GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDDP--RVEQAVQ-AF-------G- 63 (245)
T ss_dssp CEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESCH--HHHHHHH-HT-------T-
T ss_pred CEEEEEcCCCCCcCCC------CccccccCCc-cHHHHHHHHHHhCCCCCeEEEecccc--cchhhhh-hc-------C-
Confidence 5689999999999984 2999999999 9999999999987 678888877643 3333332 21 2
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceecc--CCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLYR--MDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~~--~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
.+++..... ..++.+.+..+...+. .+.++++.||..+. ..+..+++.+.............
T Consensus 64 --~~~~~~~~~--------~~~~~~~~~~~~~~~~------~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~ 127 (245)
T d1h7ea_ 64 --GKAIMTRND--------HESGTDRLVEVMHKVE------ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCH 127 (245)
T ss_dssp --CEEEECCSC--------CSSHHHHHHHHHHHSC------CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred --ceEEEecCc--------cccccHHHHHHHHhcC------CCEEEEecchhhhcccccchhhhhccccccccccccccc
Confidence 122211111 1244455555555443 46788889998652 34677788777665544333332
Q ss_pred cCC--CCCc-cceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 251 VGE--SRAS-DYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 251 ~~~--~~~~-~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
... .... ..........+.+..+...+...... .........+|+|.|+++.|..+... .+
T Consensus 128 ~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~l~~~~~~-~~ 191 (245)
T d1h7ea_ 128 AISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRN---------------AEKARYLKHVGIYAYRRDVLQNYSQL-PE 191 (245)
T ss_dssp EECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTT---------------GGGCCEEEEEEEEEEEHHHHHHGGGS-CC
T ss_pred ccccccccCCcceeeccchhhhhhhhhhhhhhhhhc---------------ccccccceeeeeEEeeeccccccccc-cC
Confidence 211 0011 12234444556677776555432110 11123577889999999998765331 11
Q ss_pred CCCchhh--hhHHhhhhcCcEEEEEeccEEEecCCHHHHHHHHHHhh
Q 010554 328 TSNDFGS--EIIPAAIMEHDVQAYIFRDYWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 328 ~~~d~~~--dil~~li~~~~V~~~~~~gyw~dIgt~~~y~~An~~ll 372 (507)
+.....+ |.+..+-.+.+|.++..++.|.+|+|++||..|...+.
T Consensus 192 s~~e~~e~ie~lr~l~ng~~I~~~~~~~~~~~IDt~~Dl~~a~~il~ 238 (245)
T d1h7ea_ 192 SMPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp CHHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred ChhhhhhhHHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 1100011 22332224578998888888899999999999987654
|
| >d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Molybdenum cofactor biosynthesis protein MobA domain: Molybdenum cofactor biosynthesis protein MobA species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=1.9e-10 Score=103.97 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=73.9
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcCCCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSGINKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~Gi~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
|.++.|||||||+|+||. ..||+|+|++|+ |||+|+++.+... +.+|+|+++.+.+.. .. ++
T Consensus 1 M~~i~~iILAgG~ssRmG----~~~K~ll~~~g~-~ll~~~l~~l~~~-~~~ivv~~~~~~~~~-----~~-------~~ 62 (188)
T d1e5ka_ 1 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMTQ-LSHVVVNANRHQEIY-----QA-------SG 62 (188)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHHH-CSCEEEECSSSHHHH-----HT-------TS
T ss_pred CCceeEEEEcCCCCcCCC----CCCcccCEECCE-ehhHHHHhhhccc-ccccccccCccHHhh-----hh-------cC
Confidence 567899999999999997 258999999999 9999999998876 567888877654321 11 11
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-cCCH-HHHHH
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-RMDY-MDFIQ 235 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~~dl-~~ll~ 235 (507)
+.+..... . . ..|...++..+.... ..+.++++.||+-+ ..++ ..+++
T Consensus 63 ---~~v~~d~~-~-----~-~~~~~~g~~~~~~~~------~~~~vlv~~~D~P~i~~~~i~~L~~ 112 (188)
T d1e5ka_ 63 ---LKVIEDSL-A-----D-YPGPLAGMLSVMQQE------AGEWFLFCPCDTPYIPPDLAARLNH 112 (188)
T ss_dssp ---CCEECCCT-T-----C-CCSHHHHHHHHHHHC------CSSEEEEEETTCTTCCTTHHHHHHH
T ss_pred ---CCcccccc-c-----c-ccchhHHHHHHHHhc------ccceEEEeccCCCCCCHHHHHHHHH
Confidence 22222111 1 0 135666666654333 35789999999944 5554 44443
|
| >d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Neisseria meningitidis [TaxId: 487]
Probab=99.07 E-value=1.5e-09 Score=100.44 Aligned_cols=217 Identities=16% Similarity=0.125 Sum_probs=131.1
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccC
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFG 171 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~ 171 (507)
++..|||+|.|.++|+. .|+|+||+|+ |||+|+++.+.+++ +++|+|.+. .+.+.+.+ +.| +
T Consensus 3 ~~~iaiIpar~~S~R~p------~K~l~~i~gk-pLi~~~i~~~~~s~~~~~Iiv~td--~~~i~~i~-~~~-------~ 65 (225)
T d1eyra_ 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEA-KNF-------G 65 (225)
T ss_dssp CEEEEEEECCSCCSSST------TGGGCEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHH-HHT-------T
T ss_pred CCEEEEEccCCCCcCCC------CccccccCCe-EHHHHHHHHHHHcCCCceEEEeec--cchhhhhh-hhh-------c
Confidence 34568999999999984 3999999999 99999999999997 588877664 34444433 332 2
Q ss_pred CCeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec-c-CCHHHHHHHHHHcCCceEEEEE
Q 010554 172 DGFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY-R-MDYMDFIQSHVDRDADITISCA 249 (507)
Q Consensus 172 ~~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~-~-~dl~~ll~~h~~~~a~~tl~~~ 249 (507)
. .+ +....... ....++.+.++.+...+. ...+.++++.||.-+ + .++.++++.+...+.+..+.+.
T Consensus 66 ~-~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~ 134 (225)
T d1eyra_ 66 V-EV-VLRPAELA-----SDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSAC 134 (225)
T ss_dssp C-EE-EECCHHHH-----STTCCHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEE
T ss_pred c-ee-eeeccccc-----cccccchhhccccccccc----cccceEEEeeccccccccccccccceeeccccccccceee
Confidence 1 11 12111111 011355666666655553 345789999999954 3 4578888888888877666666
Q ss_pred EcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCCCC
Q 010554 250 AVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYPTS 329 (507)
Q Consensus 250 ~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~~~ 329 (507)
+.... + .+.++ ..+++.+..+......... .......+..+.++|+++.+.|... ..
T Consensus 135 ~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~y~~~g~iy~~~~~~l~~~--~~---- 191 (225)
T d1eyra_ 135 PMEHH-P-LKTLL-QINNGEYAPMRHLSDLEQP--------------RQQLPQAFRPNGAIYINDTASLIAN--NC---- 191 (225)
T ss_dssp ECSSC-T-TSCEE-ECSSSCEEESSCGGGGTSC--------------GGGSCCEEEEEEEEEEEEHHHHHHH--TS----
T ss_pred ccccc-c-ccccc-ccccccccccccccccccc--------------cccCcceeeecceeEEeeHHHHHHc--CC----
Confidence 55431 1 23333 3345655544322211100 0001123567889999999987542 00
Q ss_pred CchhhhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHh
Q 010554 330 NDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMAL 371 (507)
Q Consensus 330 ~d~~~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~l 371 (507)
.-..++..+..+. ..+||+|++||..|...+
T Consensus 192 -----------~~~~~~~~~~i~~~~~~dIdt~eDl~~ae~i~ 223 (225)
T d1eyra_ 192 -----------FFIAPTKLYIMSHQDSIDIDTELDLQQAENIL 223 (225)
T ss_dssp -----------SCCSSCEEEECCTTTTCCCCSHHHHHHHHHHH
T ss_pred -----------ccCCCeEEEEcCccceECCCCHHHHHHHHHHh
Confidence 1122445555543 357999999999997543
|
| >d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.07 E-value=2.9e-09 Score=106.87 Aligned_cols=215 Identities=11% Similarity=0.151 Sum_probs=138.5
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHh----cCCC-EEEEEeccC-chHHHHHHHhcc-c
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCIN----SGIN-KIFVLTQFN-SASLNRHIARTY-F 164 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~----~Gi~-~I~Vv~~~~-~~~l~~~l~~~~-~ 164 (507)
.+++.+|+||||.||||. ...||+++||++..++++..++++.. .|.. .++|.|++. .+...+++.+.. +
T Consensus 72 l~kvavv~LaGG~GTRLG---~~~pK~~~~v~~~~t~ldl~~~~i~~l~~~~~~~iP~~iMtS~~T~~~t~~~l~~~~~f 148 (378)
T d2icya2 72 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGLTFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS 148 (378)
T ss_dssp HTTEEEEEEECCBSGGGT---CCSBGGGSEEETTEEHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTS
T ss_pred hCCEEEEEecCCcccccC---CCCCceeeEeCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHhccC
Confidence 468999999999999986 57999999997444999999999874 2332 467777654 567778886432 3
Q ss_pred CCCcc-cCCCeEE--------EecCccCCCCCCCCc-ccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceeccCCHHH
Q 010554 165 GNGTN-FGDGFVE--------VLAATQTPGESGKNW-FQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLYRMDYMD 232 (507)
Q Consensus 165 ~~~~~-~~~~~V~--------vl~~~q~~~~~~~~~-~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~gD~i~~~dl~~ 232 (507)
+.... |.+..+- .+...... ....| |.|.||..+.... .+++....+.+.+.|.+.|.+..+.--.
T Consensus 149 g~~i~~f~Q~~~P~~~~~~~~~~~~~~~~--~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vDNl~a~~Dp~ 226 (378)
T d2icya2 149 NVDIHTFNQSKYPRVVADEFVPWPSKGKT--DKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGAIVDLT 226 (378)
T ss_dssp SSCEEEEECCCEECEETTTTEEGGGGTCC--SGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTCCCCHH
T ss_pred CCceEEEEecccccccCCcccccccccCC--CcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccCCcccccchH
Confidence 32110 1011111 11100000 11123 5699988776533 3444445678999999999988765568
Q ss_pred HHHHHHHcCCceEEEEEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEE
Q 010554 233 FIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYV 312 (507)
Q Consensus 233 ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyi 312 (507)
++..|..+++++++-+.+...+...--.++..|..-+|+++.|.|....... .-+ ....+.+++.+.
T Consensus 227 ~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~-~~~------------~~~~~~N~nn~~ 293 (378)
T d2icya2 227 ILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEF-KSI------------EKFKIFNTNNLW 293 (378)
T ss_dssp HHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHH-HSS------------SSCCEEEEEEEE
T ss_pred HHHHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhhh-cCC------------cCcceeeeeeee
Confidence 8999999999999988876553333334555554446777777765432100 000 012357999999
Q ss_pred EeHHHHHHHHHh
Q 010554 313 FKKDVLFKLLRW 324 (507)
Q Consensus 313 f~~~iL~~ll~~ 324 (507)
|+-+.|.++++.
T Consensus 294 ~~l~~l~~~~~~ 305 (378)
T d2icya2 294 VNLKAIKKLVEA 305 (378)
T ss_dssp EEHHHHHHHHHT
T ss_pred eeHHHHHHHHhh
Confidence 999999988764
|
| >d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain species: Campylobacter jejuni [TaxId: 197]
Probab=98.93 E-value=8.3e-10 Score=101.99 Aligned_cols=123 Identities=14% Similarity=0.126 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCcccCC
Q 010554 94 NVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNFGD 172 (507)
Q Consensus 94 ~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~~~ 172 (507)
++.+||||||.|+||. ...||+|++++|+ |||+|+++++.+.. +++|+|++.. .+ ++. .+ ..
T Consensus 1 ~is~IILAaG~g~Rmg---~~~pK~~~~i~gk-pii~~~l~~~~~~~~~~~Ivvv~~~-~~----~~~-~~-~~------ 63 (205)
T d1w55a1 1 EMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSSN-IT----YMK-KF-TK------ 63 (205)
T ss_dssp CEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEESC-HH----HHH-TT-CS------
T ss_pred CeEEEEeCCccCeeCC---cCCCceeEEECCE-EHHHHHHHHHHhhcccccccccccc-cc----ccc-cc-cc------
Confidence 4689999999999998 4689999999999 99999999998864 6777666543 22 222 21 11
Q ss_pred CeEEEecCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCce-ecc-CCHHHHHHHHHHcCCceEEEEEE
Q 010554 173 GFVEVLAATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDH-LYR-MDYMDFIQSHVDRDADITISCAA 250 (507)
Q Consensus 173 ~~V~vl~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~-i~~-~dl~~ll~~h~~~~a~~tl~~~~ 250 (507)
.+.++... ..-.++++.++..++ .+.+++..||. +.+ ..+.++++.+.+. ++.+.+.+
T Consensus 64 -~~~~v~Gg-----------~~r~~Sv~~gl~~~~------~~~VlIhd~~rP~i~~~~i~~li~~~~~~--~~~i~~~~ 123 (205)
T d1w55a1 64 -NYEFIEGG-----------DTRAESLKKALELID------SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALK 123 (205)
T ss_dssp -SSEEEECC-----------SSHHHHHHHHHTTCC------SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEEC
T ss_pred -cccccccc-----------cchhhhhhhhhhhhh------hcceeeeccCcccCcHHHHHHHHhhhhcc--cccccccc
Confidence 12333210 133577877765553 46788888988 334 3467777766554 44555555
Q ss_pred cCC
Q 010554 251 VGE 253 (507)
Q Consensus 251 ~~~ 253 (507)
+.+
T Consensus 124 ~~d 126 (205)
T d1w55a1 124 VAD 126 (205)
T ss_dssp CCS
T ss_pred ccc
Confidence 443
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=3.8e-09 Score=81.92 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=51.7
Q ss_pred ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECCCcEEecCCCCccCCCCCC
Q 010554 406 DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGKDVVIVNKDDVQEADRPEL 484 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~ 484 (507)
++.||++|.|+ ++.++..+ .|++| |.||.||.|+||.|++|++|++++.|.+
T Consensus 14 ~v~IG~~~~I~~~~~i~g~~------------~IG~~---v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~------------ 66 (78)
T d1fxja1 14 TLTHGRDVEIDTNVIIEGNV------------TLGHR---VKIGTGCVIKNSVIGDDCEISPYTVVED------------ 66 (78)
T ss_dssp EEEECSSCEECTTEEEEEEE------------EECTT---CEECTTCEEESCEECTTCEECTTCEEES------------
T ss_pred cEEECCCCEECCccEEeCCc------------EECCC---CEECCCeEEecCEECCCCEEcCCcEEEC------------
Confidence 45677777776 55555322 24888 8999999999999999999999999976
Q ss_pred CeEEcCCeEEEcCCCEeCCC
Q 010554 485 GFYIRSGITIIMEKATIEDG 504 (507)
Q Consensus 485 ~~~i~~g~~vig~~~~i~~g 504 (507)
++||++++|+|.
T Consensus 67 --------~~Ig~~~~IGPf 78 (78)
T d1fxja1 67 --------ANLAAACTIGPF 78 (78)
T ss_dssp --------EEECTTCEESCC
T ss_pred --------CEECCCCEECcC
Confidence 789999999873
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.85 E-value=1.3e-08 Score=94.32 Aligned_cols=217 Identities=14% Similarity=0.196 Sum_probs=125.8
Q ss_pred CCceEEEEEcCCCCCcccCCccCCCccceeecCcchhhHHHHHHHHhcC-CCEEEEEeccCchHHHHHHHhcccCCCccc
Q 010554 92 PKNVAAIILGGGAGTKLFPLTLRAATPAVPVAGCYRLIDIPMSNCINSG-INKIFVLTQFNSASLNRHIARTYFGNGTNF 170 (507)
Q Consensus 92 ~~~~~aVILAaG~GtRL~PLT~~~PK~LlPI~g~ypLId~~L~~l~~~G-i~~I~Vv~~~~~~~l~~~l~~~~~~~~~~~ 170 (507)
|.++.|||+|.|.++|| | -|+|.+++|+ |||+|+++++.+++ +++|+|.+. .+.+.+... .|
T Consensus 1 ~~ki~aiIpaR~~S~Rl-p-----~K~l~~i~gk-pLi~~~i~~~~ks~~id~Iivstd--~~~i~~~~~-~~------- 63 (228)
T d1qwja_ 1 PPHLAALVLARGGSKGI-P-----LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAK-QF------- 63 (228)
T ss_dssp CCCEEEEEECCSCCSSS-S-----CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHH-HT-------
T ss_pred CCCEEEEeccCCCCCCC-C-----CcchhhhCCe-eHHHHHHHHHHhcCCcceEEEecc--hhhhhhhhh-hc-------
Confidence 45789999999999999 4 3999999999 99999999999875 678877764 334444443 22
Q ss_pred CCCeEEEe-cCccCCCCCCCCcccChHHHHHHHHHHHHhhhcCCCCeEEEEcCceec--cCCHHHHHHHHHHcCCceEEE
Q 010554 171 GDGFVEVL-AATQTPGESGKNWFQGTADAVRQFTWVFEDAKNRNIENVAILCGDHLY--RMDYMDFIQSHVDRDADITIS 247 (507)
Q Consensus 171 ~~~~V~vl-~~~q~~~~~~~~~~~Gta~AL~~~~~~l~~~~~~~~~~~lVl~gD~i~--~~dl~~ll~~h~~~~a~~tl~ 247 (507)
+ +.++ ......+. .....+.+..+.... ...+.++++.+|.-+ ..++.++++.+++.+.+..+.
T Consensus 64 ~---~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~-----~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~ 130 (228)
T d1qwja_ 64 G---AQVHRRSSETSKD-----SSTSLDAIVEFLNYH-----NEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFS 130 (228)
T ss_dssp T---CEEEECCGGGSST-----TCCHHHHHHHHHTTC-----TTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEE
T ss_pred C---ccccccccccccc-----cchhhhhhhhccccc-----cccceeeeecccccccCchhhhhhhhhhhccCcccccc
Confidence 2 1222 11111111 124556665544322 235678888898844 346889999999888887776
Q ss_pred EEEcCCCCCccceEEEECCCCcEEEEEeCCCccccccccccccccCCCccccccCCceeeeEEEEEeHHHHHHHHHhhCC
Q 010554 248 CAAVGESRASDYGLVKIDNMGRIAQFAEKPSGANLKAMQVDTSLLGFSPQEARKCPYVASMGVYVFKKDVLFKLLRWRYP 327 (507)
Q Consensus 248 ~~~~~~~~~~~~g~v~id~~grV~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Giyif~~~iL~~ll~~~~~ 327 (507)
+...... .+..+.....+........+... .........+..+.++|+++.+++.. ..
T Consensus 131 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------~~~qd~~~~y~~ng~~~~~k~~~~~~---~~-- 188 (228)
T d1qwja_ 131 VVRRHQF---RWSEIQKGVREVTEPLNLNPAKR--------------PRRQDWDGELYENGSFYFAKRHLIEM---GY-- 188 (228)
T ss_dssp EEEECCC---EECCCCSSTTCCCCBSSSBTTBC--------------CCTTTSCCEEEEEEEEEEEEHHHHHT---TC--
T ss_pred ccccccc---cchhhhhhccccccchhhhhhhc--------------cccccccceeeeeeEEEEEeHHHHhh---CC--
Confidence 6654321 11111100001000000000000 00000011256677788888776641 10
Q ss_pred CCCchhhhhHHhhhhcCcEEEEEecc-EEEecCCHHHHHHHHHHhhc
Q 010554 328 TSNDFGSEIIPAAIMEHDVQAYIFRD-YWEDIGTIKSFYEANMALTK 373 (507)
Q Consensus 328 ~~~d~~~dil~~li~~~~V~~~~~~g-yw~dIgt~~~y~~An~~ll~ 373 (507)
+...++..|..+. ...||+|++||..|...+..
T Consensus 189 -------------~~~~k~~~~~i~~~~~idIDt~eD~~~Ae~~l~k 222 (228)
T d1qwja_ 189 -------------LQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (228)
T ss_dssp -------------SSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred -------------cCCCCEEEEEcCccceECCCCHHHHHHHHHHHHH
Confidence 1124566676654 35799999999999877754
|
| >d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=2.1e-08 Score=77.66 Aligned_cols=60 Identities=17% Similarity=0.333 Sum_probs=47.7
Q ss_pred CCcCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCCCEECC
Q 010554 391 PRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKNVKIGK 466 (507)
Q Consensus 391 ~~~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~na~Ig~ 466 (507)
..+.+.+.|+ ++.|. ++.||+||+|+ +|.|++|.| +++ +.|+++++|++|+|++||+||+
T Consensus 15 v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~I-------------g~~---~~I~~~s~i~~~~Ig~~~~IGP 77 (78)
T d1fxja1 15 LTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVI-------------GDD---CEISPYTVVEDANLAAACTIGP 77 (78)
T ss_dssp EEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEE-------------CTT---CEECTTCEEESEEECTTCEESC
T ss_pred EEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEE-------------CCC---CEEcCCcEEECCEECCCCEECc
Confidence 3444555555 36665 67888888888 678887776 899 8999999999999999999997
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.60 E-value=8.7e-08 Score=91.46 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=41.3
Q ss_pred eeeCCCcEEee-eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCe-----EEEcCCCEeCCCcc
Q 010554 445 IGVGRNTKIRN-CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGI-----TIIMEKATIEDGMV 506 (507)
Q Consensus 445 ~~Ig~~~~I~n-sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~-----~vig~~~~i~~gt~ 506 (507)
+.||+++.|.+ +.|+.+|.||+++.|.+...+......+++..|..+. +.||+++.|+.|++
T Consensus 109 T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~~~Ig~~v~ig~~~~i~~~v~IG~~a~igagS~ 176 (262)
T d2jf2a1 109 TKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSG 176 (262)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCE
T ss_pred eEECCCCEEecccccccccccCCCeeecCccccccceeeCceEEeccCceeccccEeehhceeeccce
Confidence 56788888774 7788888888888888777666666666666665441 34455555555544
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.48 E-value=1.7e-07 Score=86.35 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=46.0
Q ss_pred eeecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 436 SLLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 436 s~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+.|+++ |.||+++.|. +|.||+++.||.+++|.++ .+++..-...+..+ .| ++|++++.|++|+++
T Consensus 104 ~~IG~~---v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~-~IG~~~vIg~~svv-~g-~~i~~g~~I~~g~~v 170 (210)
T d1qrea_ 104 VYIGNN---VSLAHQSQVHGPAAVGDDTFIGMQAFVFKS-KVGNNCVLEPRSAA-IG-VTIPDGRYIPAGMVV 170 (210)
T ss_dssp EEECTT---CEECTTCEEEEEEEECTTCEECTTCEEEEE-EECTTCEECTTCEE-ES-CEECTTBEECTTCEE
T ss_pred eeeccc---cccccccccccCCcccCCcEeeCCcccccc-ccccCcEEecCcEe-cC-cEeCCCcEECCCcEE
Confidence 667887 8888888886 6899999999999988875 34444333333333 23 456777788877753
|
| >d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: gamma-carbonic anhydrase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=98.47 E-value=3.7e-07 Score=84.01 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=22.5
Q ss_pred eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCC
Q 010554 455 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDG 504 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~g 504 (507)
+++||+++.||.++.|...+.+++...+..+..+.++ +||+++.|+++
T Consensus 103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~~--~IG~~~vIg~~ 150 (210)
T d1qrea_ 103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKS--KVGNNCVLEPR 150 (210)
T ss_dssp SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEE--EECTTCEECTT
T ss_pred ceeeccccccccccccccCCcccCCcEeeCCcccccc--ccccCcEEecC
Confidence 3555555555555555443344444444444444322 34555554443
|
| >d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.45 E-value=3.6e-07 Score=77.98 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=29.1
Q ss_pred ceeeeceEEcCCcEEc-cceEeeeeEEeeccCceEeeeecCCCcceeeCCCcEEeeeEeCCC
Q 010554 401 NCRIKDAIISHGCFLR-ECTVEHSIVDYYQTESEIASLLAEGKVPIGVGRNTKIRNCIIDKN 461 (507)
Q Consensus 401 ~~~I~~siIg~gc~I~-~~~I~~Sii~~vg~~~~i~s~l~~g~~~~~Ig~~~~I~nsIIg~n 461 (507)
.+++.++.|. +|.|+ +|.|.++.+ .+|+++++ +.||+++.|+++++..+
T Consensus 4 p~~i~~~~i~-~s~Ig~g~~I~~~~i--------~~s~IG~~---~~Ig~~~~I~~~~i~~~ 53 (135)
T d1yp2a1 4 PSKMLDADVT-DSVIGEGCVIKNCKI--------HHSVVGLR---SCISEGAIIEDSLLMGA 53 (135)
T ss_dssp CEEEEEEEEE-EEEECTTCEEEEEEE--------ESCEECTT---CEECTTCEEESCEECCC
T ss_pred CcccCCCEEE-eCEECCCCEEeCCEE--------eccccCCc---EEECCCCEEEcCEEECC
Confidence 3555555553 36665 455555443 13667777 77777777777666554
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.38 E-value=8e-07 Score=84.37 Aligned_cols=29 Identities=10% Similarity=-0.198 Sum_probs=14.3
Q ss_pred ccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 477 QEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 477 ~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++......+..|-+| +.||+++.|++|++
T Consensus 143 g~~v~IG~~s~I~~g-v~IG~~a~IgagSv 171 (259)
T d1j2za_ 143 GDYVNIGGLTAIHQF-VRIAKGCMIAGKSA 171 (259)
T ss_dssp CSSCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred cccceecceeeeecc-cEeccceeeeeeee
Confidence 333333333444444 45566666666654
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.33 E-value=1.7e-06 Score=78.44 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=10.1
Q ss_pred EEEecCCHHHHHHHHHHhh
Q 010554 354 YWEDIGTIKSFYEANMALT 372 (507)
Q Consensus 354 yw~dIgt~~~y~~An~~ll 372 (507)
+..-|+++..-.+....+.
T Consensus 49 ~~iaIG~~~~R~~~~~~~~ 67 (193)
T d3bswa1 49 FFIAIGNNEIRKKIYQKIS 67 (193)
T ss_dssp EEECCSCHHHHHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHhh
Confidence 3456888764344333333
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.32 E-value=3.3e-07 Score=82.53 Aligned_cols=14 Identities=7% Similarity=0.171 Sum_probs=8.3
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
+.||+++.|++|++
T Consensus 161 v~IG~~s~Igagsv 174 (196)
T d1g97a1 161 VELGDNSLVGAGST 174 (196)
T ss_dssp CEECTTCEECTTCE
T ss_pred cEECCCCEECCCCE
Confidence 45566666666654
|
| >d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Helicobacter pylori [TaxId: 210]
Probab=98.32 E-value=1.2e-06 Score=83.21 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=23.1
Q ss_pred eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 456 CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
+.|+.++.||+++.+.+...+......+++..|..+ ++|.++++|+++++|
T Consensus 116 ~~i~~~~~ig~~~~i~~~~~i~g~v~Ig~~v~IG~~-s~I~~gv~IG~~a~I 166 (259)
T d1j2za_ 116 VHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGL-TAIHQFVRIAKGCMI 166 (259)
T ss_dssp CEECTTCEECSSCEECTTCEECTTCEECSSCEECTT-CEECTTCEECTTCEE
T ss_pred ccccceecccceeeeeccccccccccccccceecce-eeeecccEeccceee
Confidence 344444444444444444333333444444444444 445555555555543
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=98.30 E-value=1.1e-06 Score=78.03 Aligned_cols=106 Identities=18% Similarity=0.397 Sum_probs=58.5
Q ss_pred CCcCCCceecc-eeee-ceEEcCCcEEc-cceEeee----eE---EeeccCceEe------eeecCCCcceeeCCCcEEe
Q 010554 391 PRFLPPTKIDN-CRIK-DAIISHGCFLR-ECTVEHS----IV---DYYQTESEIA------SLLAEGKVPIGVGRNTKIR 454 (507)
Q Consensus 391 ~~~~~p~~i~~-~~I~-~siIg~gc~I~-~~~I~~S----ii---~~vg~~~~i~------s~l~~g~~~~~Ig~~~~I~ 454 (507)
+++.+.++|+. +.|. ++.||++|.|+ +|.|... .| ..++..+.+. ..++++ +.++.++.+.
T Consensus 13 ~~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~---~~~~~~~~~~ 89 (172)
T d1xhda_ 13 PKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDD---VTVGHQVILH 89 (172)
T ss_dssp CEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTT---CEECTTCEEE
T ss_pred CEECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeee---eeeeeeeccc
Confidence 34555566653 5554 67788888877 5666432 22 1223333332 234444 5566666667
Q ss_pred eeEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 455 NCIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 455 nsIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
++.|++++.||.+++|.+...+ +++..|..| ++|.++..||++++
T Consensus 90 ~~~i~~~~~ig~~~~i~~gv~I------G~~~~Igag-svV~~~~~i~~~~v 134 (172)
T d1xhda_ 90 SCHIKKDALIGMGSIILDGAEI------GEGAFIGAG-SLVSQGKKIPPNTL 134 (172)
T ss_dssp SCEECTTCEECTTCEECTTCEE------CTTCEECTT-CEECTTCEECTTEE
T ss_pred ccccccceEEecccEeeCCcEE------cCcccccce-EEEeeCeEECCCeE
Confidence 7777777777777777664333 333444444 45555555555554
|
| >d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: UDP N-acetylglucosamine acyltransferase domain: UDP N-acetylglucosamine acyltransferase species: Escherichia coli, gene lpxA [TaxId: 562]
Probab=98.30 E-value=1.7e-06 Score=82.16 Aligned_cols=66 Identities=8% Similarity=-0.030 Sum_probs=38.1
Q ss_pred eecCCCcceeeCCCcEEee--------eEeCCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCcc
Q 010554 437 LLAEGKVPIGVGRNTKIRN--------CIIDKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMV 506 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~n--------sIIg~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~ 506 (507)
.++++ +.||++|.|.. +.||+++.|+.+++|.+.+.+++..-...+..+.+. ++||+++.|+.++.
T Consensus 85 ~IG~~---v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~i~~~~~i~g~-~~Ig~~v~ig~~~~ 158 (262)
T d2jf2a1 85 EIGDR---NRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGH-VSVDDFAIIGGMTA 158 (262)
T ss_dssp EECSS---CEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTT-CEECTTCEECTTCE
T ss_pred EECCe---eeecceEeccCccccCccceEECCCCEEecccccccccccCCCeeecCccccccc-eeeCceEEeccCce
Confidence 45555 66666666642 456666666666666555555554443444444444 66777777766654
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.20 E-value=2.4e-06 Score=75.75 Aligned_cols=109 Identities=18% Similarity=0.298 Sum_probs=51.2
Q ss_pred CcCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeE-EeeccCceEe--eeecCC-Ccc------eeeCCCcEEeeeEe
Q 010554 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV-DYYQTESEIA--SLLAEG-KVP------IGVGRNTKIRNCII 458 (507)
Q Consensus 392 ~~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii-~~vg~~~~i~--s~l~~g-~~~------~~Ig~~~~I~nsII 458 (507)
++.+.+.|+ ++.|. ++.||++|.|+ +|.|....- ..++.++.+. +.+..+ ..+ +.+.......++.|
T Consensus 12 ~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 91 (173)
T d1v3wa_ 12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKV 91 (173)
T ss_dssp EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEE
T ss_pred EECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeec
Confidence 344455555 34443 66777777776 455542110 1123333221 111100 000 22333334444555
Q ss_pred CCCCEECCCcEEecCCCCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 459 DKNVKIGKDVVIVNKDDVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 459 g~na~Ig~~~~i~~~~~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
|+++.||.+++|..+. ..+++.+|..| ++|.++..||+++++
T Consensus 92 g~~~~ig~~~~i~~gv------~Ig~~~vIgag-svV~~~~~i~~~~iv 133 (173)
T d1v3wa_ 92 GNYVIIGISSVILDGA------KIGDHVIIGAG-AVVPPNKEIPDYSLV 133 (173)
T ss_dssp CSSEEECTTCEECTTC------EECSSEEECTT-CEECTTCEECTTEEE
T ss_pred CCcccccceeeecCCE------EEcceeEEcCC-cEEeCCeEeCCCCEE
Confidence 5555555555554432 33444555556 667777777777653
|
| >d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: UDP-glucose pyrophosphorylase domain: UDP-N-acetylglucosamine pyrophosphorylase species: Human (Homo sapiens), AGX1 [TaxId: 9606]
Probab=98.14 E-value=3.7e-05 Score=78.89 Aligned_cols=214 Identities=18% Similarity=0.249 Sum_probs=126.9
Q ss_pred CceEEEEEcCCCCCcccCCccCCCccceee---cCcchhhHHHHHHHHhc----------CC-CEEEEEecc-CchHHHH
Q 010554 93 KNVAAIILGGGAGTKLFPLTLRAATPAVPV---AGCYRLIDIPMSNCINS----------GI-NKIFVLTQF-NSASLNR 157 (507)
Q Consensus 93 ~~~~aVILAaG~GtRL~PLT~~~PK~LlPI---~g~ypLId~~L~~l~~~----------Gi-~~I~Vv~~~-~~~~l~~ 157 (507)
.++.+|+||||.||||. ..-||.++|| .|+ .+++..++.+... +. =-++|.|+. ..+...+
T Consensus 101 gkvavvllaGG~GTRLG---~~~pK~~~~v~~~~~k-sllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~~T~~~t~~ 176 (501)
T d1jv1a_ 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (501)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CCEEEEEECCCccccCC---CCCCceeeeeccCCCC-cHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECChhHhHHHHH
Confidence 57999999999999996 6789999998 466 8999988876542 21 136677754 4677888
Q ss_pred HHHhc-ccCCCcc----cCCCeEEEecCcc-CCCC---CCCCcccChHHHHHHHHH--HHHhhhcCCCCeEEEEcCceec
Q 010554 158 HIART-YFGNGTN----FGDGFVEVLAATQ-TPGE---SGKNWFQGTADAVRQFTW--VFEDAKNRNIENVAILCGDHLY 226 (507)
Q Consensus 158 ~l~~~-~~~~~~~----~~~~~V~vl~~~q-~~~~---~~~~~~~Gta~AL~~~~~--~l~~~~~~~~~~~lVl~gD~i~ 226 (507)
++.+. ||+.... |.+..+-.+.... ..-+ .-...|-|.|+....... .+++....+.+.+.+.+-|.+.
T Consensus 177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~l 256 (501)
T d1jv1a_ 177 FFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNIL 256 (501)
T ss_dssp HHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBTT
T ss_pred HHHhccccCCCcCceEEEEecCcceECCCCCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCcc
Confidence 88643 3553211 1111111111000 0000 000124577776655432 3444444678999999999964
Q ss_pred -c-CCHHHHHHHHHHcCCceEEEEEEcCCCCCccceEEEECCCCc--EEEEEeCCCccccccccccccccCCCccccccC
Q 010554 227 -R-MDYMDFIQSHVDRDADITISCAAVGESRASDYGLVKIDNMGR--IAQFAEKPSGANLKAMQVDTSLLGFSPQEARKC 302 (507)
Q Consensus 227 -~-~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~~g~v~id~~gr--V~~~~eKp~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (507)
. .| -.++..|..+++++.+-+.+...+. ..-|++.. .+|+ |+++.|-|..... ... +.. ...
T Consensus 257 ~~~~D-p~~lG~~~~~~~~~~~kvv~k~~~~-e~~G~l~~-~dg~~~vvEysel~~~~~~-~~~-~~g---------~l~ 322 (501)
T d1jv1a_ 257 VKVAD-PRFIGFCIQKGADCGAKVVEKTNPT-EPVGVVCR-VDGVYQVVEYSEISLATAQ-KRS-SDG---------RLL 322 (501)
T ss_dssp CCTTC-HHHHHHHHHTTCSEEEEEEECCSTT-CSCCEEEE-ETTEEEEECGGGSCHHHHH-CBC-TTS---------SBS
T ss_pred ccccC-HHHHHHHHhcccceeEEEEEcCCCC-cccceEEE-ECCeEEEEEeccCCHHHHh-hcc-CCC---------ccc
Confidence 3 44 5678899999999988887754422 23455443 2354 4444444322111 000 000 001
Q ss_pred CceeeeEEEEEeHHHHHHHHHh
Q 010554 303 PYVASMGVYVFKKDVLFKLLRW 324 (507)
Q Consensus 303 ~~l~~~Giyif~~~iL~~ll~~ 324 (507)
....+++.++|+-++|.++++.
T Consensus 323 f~~~Ni~~~~fsl~fl~~~~~~ 344 (501)
T d1jv1a_ 323 FNAGNIANHFFTVPFLRDVVNV 344 (501)
T ss_dssp SCEEEEEEEEEEHHHHHHHHHT
T ss_pred ccccceeheeeEHHHHHHHHHh
Confidence 2357899999999999988763
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=3.3e-06 Score=76.86 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=13.1
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
+.||+++.|. +|+|.++++||++|+|+.
T Consensus 131 v~Igd~v~IG~~~~I~~Gv~IG~~~vIga 159 (200)
T d1krra_ 131 ITIGNNVWIGSHVVINPGVTIGDNSVIGA 159 (200)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred EEEccCcccceeeecccccccCCCcEEeC
Confidence 4444444443 344444444444444443
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=3.5e-06 Score=76.13 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=30.6
Q ss_pred eCCCcEEeeeEeCCCCEECCCcEEecCC-------CCccCCCCCCCeEEcCCeEEEcCCCEeCCCccC
Q 010554 447 VGRNTKIRNCIIDKNVKIGKDVVIVNKD-------DVQEADRPELGFYIRSGITIIMEKATIEDGMVI 507 (507)
Q Consensus 447 Ig~~~~I~nsIIg~na~Ig~~~~i~~~~-------~~~e~~~~~~~~~i~~g~~vig~~~~i~~gt~i 507 (507)
|++++.+.++.++.++.++.++...+.. .+++......+..|.++ +.||+++.|++|+++
T Consensus 110 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Ig~~v~iG~~~~I~~~-v~IG~~s~IgagsvV 176 (201)
T d2oi6a1 110 AGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAP-VTVGKGATIAAGTTV 176 (201)
T ss_dssp EEEEEEEEEEEECTTCEECTTCEEECBSSSCBCCEEECTTCEECTTCEEESS-EEECTTCEECTTCEE
T ss_pred EceeeeecccCcCccccccCceeEeecccccccccEeCCcEEEeEeeeEcCC-cEECCCCEECCCCEE
Confidence 3333333344555555555555444322 23333333444445555 677777777777654
|
| >d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: PglD-like domain: Acetyltransferase PglD species: Campylobacter jejuni [TaxId: 197]
Probab=98.08 E-value=3.5e-06 Score=76.25 Aligned_cols=14 Identities=7% Similarity=0.257 Sum_probs=6.8
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
+.||++++|++|++
T Consensus 161 v~Ig~~~~Igagsv 174 (193)
T d3bswa1 161 LSLADDSILGGGAT 174 (193)
T ss_dssp CEECTTCEECTTCE
T ss_pred eEECCCCEECCCCE
Confidence 34455555555543
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=97.96 E-value=9.4e-06 Score=75.89 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=6.2
Q ss_pred hcCcEEEE-EeccEEE
Q 010554 342 MEHDVQAY-IFRDYWE 356 (507)
Q Consensus 342 ~~~~V~~~-~~~gyw~ 356 (507)
+++++.+- ..+|-|.
T Consensus 39 D~G~iRVAEk~~g~W~ 54 (274)
T d3tdta_ 39 DSGALRVAEKIDGQWV 54 (274)
T ss_dssp HHTSSCSEEEETTEEE
T ss_pred cCCceEEEEecCCEEE
Confidence 33444332 2345554
|
| >d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Putative acetyltransferase/acyltransferase BC4754 species: Bacillus cereus [TaxId: 1396]
Probab=97.94 E-value=2.4e-05 Score=68.98 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=13.3
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCC
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKD 474 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~ 474 (507)
+.|++++.|. +|+|+++++||++|.|...+
T Consensus 91 ~~i~~~~~ig~~~~i~~gv~IG~~~~Igags 121 (172)
T d1xhda_ 91 CHIKKDALIGMGSIILDGAEIGEGAFIGAGS 121 (172)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred cccccceEEecccEeeCCcEEcCcccccceE
Confidence 3444444442 34444444444444444433
|
| >d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Galactoside acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=1.6e-05 Score=72.25 Aligned_cols=17 Identities=47% Similarity=0.505 Sum_probs=10.7
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
+.||++|.||.+++|..
T Consensus 131 v~Igd~v~IG~~~~I~~ 147 (200)
T d1krra_ 131 ITIGNNVWIGSHVVINP 147 (200)
T ss_dssp EEECTTCEECTTCEECT
T ss_pred EEEccCcccceeeeccc
Confidence 45666666666666654
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=7.5e-06 Score=73.28 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=11.3
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
+.||+++.|. +|+|.++++||++|+|+
T Consensus 129 v~Ig~~~~iG~~~~I~~Gv~IG~~~vIg 156 (182)
T d1ocxa_ 129 VTIGNNVWIGGRAVINPGVTIGDNVVVA 156 (182)
T ss_dssp EEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred eEECceEeeCceeeccCcEEECCCCEEC
Confidence 3344444442 34444444444444443
|
| >d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.70 E-value=2.4e-05 Score=69.86 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=19.9
Q ss_pred cccCCCcCCCceec-ceeee-ceEEcCCcEEc-cceEeeeeE
Q 010554 387 FYTSPRFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSIV 425 (507)
Q Consensus 387 i~~~~~~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Sii 425 (507)
+...+++.+.++|+ .+.|. ++.||++|.|+ ++.|+++.|
T Consensus 11 I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~I 52 (196)
T d1g97a1 11 IDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTI 52 (196)
T ss_dssp ECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEE
T ss_pred ECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeec
Confidence 33444444445554 24444 45666666665 455555443
|
| >d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: gamma-carbonic anhydrase-like domain: Ferripyochelin binding protein species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.69 E-value=5.6e-05 Score=66.50 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=47.4
Q ss_pred CCCcccCCCcCCCceec-ceeee-ceEEcCCcEEccceEeeeeE---EeeccCceEe------------eeecCCC--cc
Q 010554 384 KTPFYTSPRFLPPTKID-NCRIK-DAIISHGCFLRECTVEHSIV---DYYQTESEIA------------SLLAEGK--VP 444 (507)
Q Consensus 384 ~~~i~~~~~~~~p~~i~-~~~I~-~siIg~gc~I~~~~I~~Sii---~~vg~~~~i~------------s~l~~g~--~~ 444 (507)
+..|..++.+.|.+.+. ++.|. ++.||++|.|++. ..+..+ ..++..+.+. ....... .+
T Consensus 10 ~~~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~-~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (173)
T d1v3wa_ 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGD-IEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHG 88 (173)
T ss_dssp CCEECTTCEECTTSEEEEEEEECTTCEECTTCEEEEE-EEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEES
T ss_pred CCEECcCcEECCCCEEeCceEECCCCEECCCcccccc-ccccccccccccccccccccccCCCcccCcceeeeeeeeeee
Confidence 33455555566666665 46665 6788888877521 111111 0112222210 1111100 01
Q ss_pred eeeCCCcEEe-eeEeCCCCEECCCcEEecCCCCcc
Q 010554 445 IGVGRNTKIR-NCIIDKNVKIGKDVVIVNKDDVQE 478 (507)
Q Consensus 445 ~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~~~~~~e 478 (507)
+.||+++.|. +|+|+++++||++|+|.....+..
T Consensus 89 ~~Ig~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~ 123 (173)
T d1v3wa_ 89 AKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPP 123 (173)
T ss_dssp CEECSSEEECTTCEECTTCEECSSEEECTTCEECT
T ss_pred eecCCcccccceeeecCCEEEcceeEEcCCcEEeC
Confidence 5567766666 566677777777777766555443
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=97.57 E-value=3.7e-05 Score=69.77 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=10.0
Q ss_pred eeCCCcEEe-eeEeCCCCEECCCcEEe
Q 010554 446 GVGRNTKIR-NCIIDKNVKIGKDVVIV 471 (507)
Q Consensus 446 ~Ig~~~~I~-nsIIg~na~Ig~~~~i~ 471 (507)
.||++|.|. +|+|.++++||++|.|.
T Consensus 115 ~IGd~v~IG~~~~I~~gv~IG~~~~Ig 141 (203)
T d1mr7a_ 115 IIGNDVWIGKDVVIMPGVKIGDGAIVA 141 (203)
T ss_dssp EECSSCEECTTCEECTTCEECTTCEEC
T ss_pred EECCEEEECCceeEEeEEEEcCCCEEe
Confidence 334433333 23333333333333333
|
| >d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD species: Mycobacterium bovis [TaxId: 1765]
Probab=97.57 E-value=9e-05 Score=69.10 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=11.5
Q ss_pred eEeCCCCEECCCcEEec
Q 010554 456 CIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~~ 472 (507)
+||++||.||.++.+..
T Consensus 176 ~iIed~~~IGa~s~v~e 192 (274)
T d3tdta_ 176 TIIEDNCFIGARSEVVE 192 (274)
T ss_dssp CEECTTCEECTTCEECT
T ss_pred cEEecCcEeccCceEec
Confidence 45777777777777755
|
| >d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Maltose O-acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=7e-05 Score=66.74 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=9.9
Q ss_pred EEEcCCCEeCCCccC
Q 010554 493 TIIMEKATIEDGMVI 507 (507)
Q Consensus 493 ~vig~~~~i~~gt~i 507 (507)
+.||++++|++|+++
T Consensus 147 v~IG~~~vIgagsvV 161 (182)
T d1ocxa_ 147 VTIGDNVVVASGAVV 161 (182)
T ss_dssp CEECTTCEECTTCEE
T ss_pred EEECCCCEECCCCEE
Confidence 456777777777654
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.32 E-value=0.00012 Score=66.57 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=9.8
Q ss_pred ceEEcCCcEEc-cceE
Q 010554 406 DAIISHGCFLR-ECTV 420 (507)
Q Consensus 406 ~siIg~gc~I~-~~~I 420 (507)
+..||++|.|+ +|+|
T Consensus 54 ~v~IG~~~~I~~g~~I 69 (208)
T d1xata_ 54 KLVIGSFCSIGSGAAF 69 (208)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred eeEECCCCEECCCCEE
Confidence 45777777776 4544
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=97.32 E-value=9.8e-05 Score=68.76 Aligned_cols=33 Identities=36% Similarity=0.564 Sum_probs=18.0
Q ss_pred eecCCCcceeeCCCcEEe-eeEeCCCCEECCCcEEec
Q 010554 437 LLAEGKVPIGVGRNTKIR-NCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 437 ~l~~g~~~~~Ig~~~~I~-nsIIg~na~Ig~~~~i~~ 472 (507)
.|++| |.||.|++|- +..||+||+||.|+++..
T Consensus 191 ~Ig~~---v~IGaga~Ilg~v~IG~~a~IgAgsvV~k 224 (241)
T d1ssqa_ 191 KVREG---VMIGAGAKILGNIEVGKYAKIGANSVVLN 224 (241)
T ss_dssp EECTT---CEECTTCEEESSCEECTTCEECTTCEECS
T ss_pred ccCCC---eEECCCCEEcCCcEECCCCEECCCCEECC
Confidence 34555 5566655443 455555555555555543
|
| >d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: GlmU C-terminal domain-like domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.0021 Score=56.97 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=17.1
Q ss_pred CcCCCceec-ceeee-ceEEcCCcEEc-cceEeeee
Q 010554 392 RFLPPTKID-NCRIK-DAIISHGCFLR-ECTVEHSI 424 (507)
Q Consensus 392 ~~~~p~~i~-~~~I~-~siIg~gc~I~-~~~I~~Si 424 (507)
.+.+.++|+ +|.|. ++.||++|.|+ +|.|.++.
T Consensus 16 ~IG~~v~Ig~~vvI~~~v~IG~~~~I~~~~~I~~~~ 51 (201)
T d2oi6a1 16 THGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSV 51 (201)
T ss_dssp EECSSCEECTTEEEEEEEEECTTCEECTTCEEESCE
T ss_pred EECCCCEECCCCEECCceEECCCcEECCCEEEeeec
Confidence 334445554 35554 55666666665 45554443
|
| >d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Enterococcus faecium, VAT(D) [TaxId: 1352]
Probab=96.54 E-value=0.00061 Score=61.38 Aligned_cols=11 Identities=0% Similarity=0.135 Sum_probs=6.1
Q ss_pred ceEEcCCcEEc
Q 010554 406 DAIISHGCFLR 416 (507)
Q Consensus 406 ~siIg~gc~I~ 416 (507)
+..||++|.|+
T Consensus 29 nV~IG~~~~I~ 39 (203)
T d1mr7a_ 29 NVEVGEYSYYD 39 (203)
T ss_dssp TEEECTTCEEE
T ss_pred CEEECCCcEEc
Confidence 45566666554
|
| >d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Serine acetyltransferase domain: Serine acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=96.54 E-value=0.004 Score=57.39 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=7.7
Q ss_pred eEeCCCCEECCCcEEe
Q 010554 456 CIIDKNVKIGKDVVIV 471 (507)
Q Consensus 456 sIIg~na~Ig~~~~i~ 471 (507)
.+||+|+.||.|++|.
T Consensus 190 ~~Ig~~v~IGaga~Il 205 (241)
T d1ssqa_ 190 PKVREGVMIGAGAKIL 205 (241)
T ss_dssp CEECTTCEECTTCEEE
T ss_pred CccCCCeEECCCCEEc
Confidence 3445555555555444
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=96.54 E-value=0.0035 Score=60.16 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=5.0
Q ss_pred eCCCCEECCCcEE
Q 010554 458 IDKNVKIGKDVVI 470 (507)
Q Consensus 458 Ig~na~Ig~~~~i 470 (507)
|..++.||.++.|
T Consensus 244 i~~~v~Ig~~a~i 256 (320)
T d2f9ca1 244 LKHHVLVGGHAEV 256 (320)
T ss_dssp ECTEEEECSSCEE
T ss_pred ccCceEECCCeEE
Confidence 3333333333333
|
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=96.07 E-value=0.0075 Score=57.77 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=13.9
Q ss_pred eCCCcEEeeeEeCCCCEECCCcEEec
Q 010554 447 VGRNTKIRNCIIDKNVKIGKDVVIVN 472 (507)
Q Consensus 447 Ig~~~~I~nsIIg~na~Ig~~~~i~~ 472 (507)
+++++++.++.|..++.|+.++.+.+
T Consensus 152 i~~~~~~~~~~I~~~~~Iggna~i~~ 177 (320)
T d2f9ca1 152 IYDRATVNHSRIVHQVQLYGNATITH 177 (320)
T ss_dssp ECSSCEEESCEECSSCEECSSCEEES
T ss_pred ecccceeeeeEEeeeeeeCCCccccc
Confidence 34444555555555555555555554
|
| >d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: Galactoside acetyltransferase-like domain: Xenobiotic acetyltransferase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.65 E-value=0.0092 Score=53.58 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=7.4
Q ss_pred EEEcCCCEeCCCcc
Q 010554 493 TIIMEKATIEDGMV 506 (507)
Q Consensus 493 ~vig~~~~i~~gt~ 506 (507)
+.||+|++|++|++
T Consensus 127 v~IG~~~vIgagSv 140 (208)
T d1xata_ 127 VRVGHGAIIGSRAL 140 (208)
T ss_dssp CEECTTCEECTTCE
T ss_pred eEeCCCCEEeCceE
Confidence 44555555555554
|