Citrus Sinensis ID: 010555

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
MASSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLHSH
ccccccccccccccccccHHHHHcccccccHHHHHHHcccccccHHHcccccccccHHHHHHHcccccccEEEEEEEcccccccccccHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccHHHHHcccccccccccEEEEEEccccccccccEEEcccccccccccccccEEHHHHHHHHHHHHcccHHHHHHHHccEEEEEccccccccccccccHHHHHHHHHHHcccccccccccccEEEEcccccHHHcccHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccEEEEEEEHHHHHHccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHcc
ccccccccccccccccccccccccccccccHHHHHHcccccHHHEEEcccccEEEccHHHHHHccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccEEEEEccccccHHHHccccccEEccEEEEcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccEcccHHHHHHHHHHccccccHHHccHHHHHHHHHccEcHHHccccEEEccccHHHccEEEccccccccccEEEcEEEHHHcHHHHHHHHcccHHHHHHHHHccEEEEEccccEEEcHHHccHHHHHHHcccccccEEEEEccccEEEEcccccccccccEccHHHHHHHHHHcccccEEEEEEccccccHHHHHHHcHHHHHcccccEEEEEEcHHHHHHcccccHccccccccHHHHHccHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHc
massktvrklqvvspvpadidiansveplhISEIAQelnlkpnhydlyGKYKAKVLLSVLDELEGSADGYYVVVGgitptplgegksttTVGLCQALGAFLDKKVVtclrqpsqgptfgikggaagggysqvipmdefnlhltgDIHAITAANNLLAAAIDTRIFHEASQSDKAlfnrlcppnkegersFSNIMFRRLKklgisktkpedltpeEINRFarldidpasitWRRVMDVNDRFLRKItigqgpeekgmvretgFDISVASEIMAVLALTTSLADMRERLGKMvignskagdpitaddlgvgGALTVLMKDainptlmqtlegtpvlvhagpfaniahgnssIVADKIALklvgpggfvvteagfgadigaEKFMNIkcrysgltpqCAVIVATIRALKmhgggpqvvagkpldhaylNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVcshhahggkgafkepvrmlhsh
massktvrklqvvspvpadidiaNSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKalfnrlcppnkegersfsnIMFRRLKklgisktkpedltpeeinrfarldidpasitwrrvmdvnDRFLRKitigqgpeekgmvRETGFDISVASEIMAVLALTTSLADMRERLGKMvignskagdpitaDDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAhggkgafkepVRMLHSH
MASSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKggaagggYSQVIPMDEFNLHLTGDIHaitaannllaaaidtRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKaelnavrnaamaagafdaVVCSHHAHGGKGAFKEPVRMLHSH
***********VVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQ*DKALFNRLC***********NIMFRRLKKLG************EINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG***************
******V***QVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH**
**********QVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLHSH
****KTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLHSH
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MASSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLHSH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query507 2.2.26 [Sep-21-2011]
Q9SPK5 634 Formate--tetrahydrofolate yes no 0.972 0.777 0.902 0.0
P28723 637 Formate--tetrahydrofolate N/A no 0.974 0.775 0.888 0.0
P11586 935 C-1-tetrahydrofolate synt yes no 0.960 0.520 0.706 0.0
Q5R8P0 935 C-1-tetrahydrofolate synt yes no 0.960 0.520 0.702 0.0
P27653 935 C-1-tetrahydrofolate synt yes no 0.962 0.521 0.693 0.0
Q922D8 935 C-1-tetrahydrofolate synt yes no 0.962 0.521 0.699 0.0
Q6UB35 978 Monofunctional C1-tetrahy no no 0.960 0.497 0.680 0.0
Q3V3R1 977 Monofunctional C1-tetrahy no no 0.960 0.498 0.672 1e-179
Q0VCR7 975 Monofunctional C1-tetrahy no no 0.960 0.499 0.668 1e-179
Q27772 933 C-1-tetrahydrofolate synt N/A no 0.980 0.532 0.61 1e-169
>sp|Q9SPK5|FTHS_ARATH Formate--tetrahydrofolate ligase OS=Arabidopsis thaliana GN=THFS PE=1 SV=1 Back     alignment and function desciption
 Score =  916 bits (2368), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/493 (90%), Positives = 471/493 (95%)

Query: 4   SKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDEL 63
           S + RKL+VVSPVPADIDIANSVEPLHISEIA++LN+ P HYDLYGKYKAKVLLS  DEL
Sbjct: 2   SSSTRKLEVVSPVPADIDIANSVEPLHISEIAKDLNINPLHYDLYGKYKAKVLLSAFDEL 61

Query: 64  EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGG 123
           +G  DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA+LDKKVVTCLRQPSQGPTFGIKGG
Sbjct: 62  QGQEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGG 121

Query: 124 AAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPN 183
           AAGGGYSQVIPMDEFNLHLTGDIHAITA+NNLLAAAIDTRIFHE SQSDKALFNRLCPPN
Sbjct: 122 AAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDKALFNRLCPPN 181

Query: 184 KEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLR 243
           KEG+RSFS+IMFRRL KLGISKT PE+LTPEEI +FARLDIDPASITWRRVMDVNDRFLR
Sbjct: 182 KEGKRSFSDIMFRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRRVMDVNDRFLR 241

Query: 244 KITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITA 303
           KITIGQGPEEKGM RETGFDISVASEIMAVLALTTSL DMRERLGKMVIGNSKAGDPITA
Sbjct: 242 KITIGQGPEEKGMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIGNSKAGDPITA 301

Query: 304 DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG 363
           DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG
Sbjct: 302 DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG 361

Query: 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHA 423
           GFVVTEAGFG+DIG EKFMNIKCRYSGLTPQCA++VAT+RALKMHGGGP VVAG+PLD A
Sbjct: 362 GFVVTEAGFGSDIGTEKFMNIKCRYSGLTPQCAIVVATVRALKMHGGGPDVVAGRPLDRA 421

Query: 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDA 483
           Y++ENV+LVEAGCVNLA+HI+NTKAYG NV+VAVNMFATD++AELNAVR  +M AGAFDA
Sbjct: 422 YVSENVSLVEAGCVNLAKHISNTKAYGVNVIVAVNMFATDTEAELNAVRKFSMDAGAFDA 481

Query: 484 VVCSHHAHGGKGA 496
           VVCSHHAH GKGA
Sbjct: 482 VVCSHHAHSGKGA 494

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 3
>sp|P28723|FTHS_SPIOL Formate--tetrahydrofolate ligase OS=Spinacia oleracea PE=1 SV=3 Back     alignment and function description
>sp|P11586|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo sapiens GN=MTHFD1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R8P0|C1TC_PONAB C-1-tetrahydrofolate synthase, cytoplasmic OS=Pongo abelii GN=MTHFD1 PE=2 SV=3 Back     alignment and function description
>sp|P27653|C1TC_RAT C-1-tetrahydrofolate synthase, cytoplasmic OS=Rattus norvegicus GN=Mthfd1 PE=1 SV=3 Back     alignment and function description
>sp|Q922D8|C1TC_MOUSE C-1-tetrahydrofolate synthase, cytoplasmic OS=Mus musculus GN=Mthfd1 PE=1 SV=4 Back     alignment and function description
>sp|Q6UB35|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1 Back     alignment and function description
>sp|Q3V3R1|C1TM_MOUSE Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Mus musculus GN=Mthfd1l PE=1 SV=2 Back     alignment and function description
>sp|Q0VCR7|C1TM_BOVIN Monofunctional C1-tetrahydrofolate synthase, mitochondrial OS=Bos taurus GN=MTHFD1L PE=2 SV=2 Back     alignment and function description
>sp|Q27772|C1TC_SPOFR C-1-tetrahydrofolate synthase, cytoplasmic OS=Spodoptera frugiperda PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
224052994 636 10-formyltetrahydrofolate synthetase [Po 0.998 0.795 0.886 0.0
297847394 634 10-formyltetrahydrofolate synthetase [Ar 0.972 0.777 0.906 0.0
225435632 637 PREDICTED: formate--tetrahydrofolate lig 0.974 0.775 0.931 0.0
18403095 634 Formate--tetrahydrofolate ligase [Arabid 0.972 0.777 0.902 0.0
2507455 637 RecName: Full=Formate--tetrahydrofolate 0.974 0.775 0.888 0.0
224073194 636 10-formyltetrahydrofolate synthetase [Po 0.978 0.779 0.917 0.0
449462581 636 PREDICTED: formate--tetrahydrofolate lig 0.978 0.779 0.929 0.0
356536528 636 PREDICTED: formate--tetrahydrofolate lig 0.978 0.779 0.911 0.0
356576871 636 PREDICTED: formate--tetrahydrofolate lig 0.978 0.779 0.909 0.0
242044850 751 hypothetical protein SORBIDRAFT_02g02614 0.976 0.659 0.874 0.0
>gi|224052994|ref|XP_002297654.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi|222844912|gb|EEE82459.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/519 (88%), Positives = 490/519 (94%), Gaps = 13/519 (2%)

Query: 1   MASSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVL 60
           M++SKT+RKL+VVSPVPADIDIANSVEP HISEIA+ELNL P HYDLYGKYKAKVLL VL
Sbjct: 1   MSASKTLRKLEVVSPVPADIDIANSVEPFHISEIAKELNLSPKHYDLYGKYKAKVLLPVL 60

Query: 61  DELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120
           DELEGS DGYYVVVGGITPTPLGEGKSTTTVGLCQA+GAFLDKKV TCLRQPSQGPTFGI
Sbjct: 61  DELEGSGDGYYVVVGGITPTPLGEGKSTTTVGLCQAMGAFLDKKVATCLRQPSQGPTFGI 120

Query: 121 KGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLC 180
           KGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHE++QSDKAL NRLC
Sbjct: 121 KGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHESTQSDKALLNRLC 180

Query: 181 PPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDR 240
           PPNKEG+RSFS+IMFRRLK+LGISKTKPE+LTP+E+ +FARLDIDPASITWRRVMDVNDR
Sbjct: 181 PPNKEGKRSFSDIMFRRLKRLGISKTKPEELTPQEVKKFARLDIDPASITWRRVMDVNDR 240

Query: 241 FLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDP 300
           FLRKIT+GQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDP
Sbjct: 241 FLRKITVGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDP 300

Query: 301 ITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLV 360
           +TADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLV
Sbjct: 301 VTADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLV 360

Query: 361 GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPL 420
           GPGGFVVTEAGFG+DIG EKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGP+VVAGKPL
Sbjct: 361 GPGGFVVTEAGFGSDIGTEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPEVVAGKPL 420

Query: 421 DHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGA 480
           D AY  ENV+LVEAGCVNLARHI+NTKAYG NVVVAVNMFATDS+AELNAVRNAA+ AGA
Sbjct: 421 DRAYTTENVSLVEAGCVNLARHISNTKAYGVNVVVAVNMFATDSEAELNAVRNAALTAGA 480

Query: 481 FDAVVCSHHAHGGKGAFK-------------EPVRMLHS 506
           +DAVVC+HHAHGGKGA +             +P++ L+S
Sbjct: 481 YDAVVCTHHAHGGKGAVELGIAVQKACGNVTQPLKFLYS 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297847394|ref|XP_002891578.1| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata] gi|297337420|gb|EFH67837.1| 10-formyltetrahydrofolate synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225435632|ref|XP_002285654.1| PREDICTED: formate--tetrahydrofolate ligase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|18403095|ref|NP_564571.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana] gi|68052257|sp|Q9SPK5.1|FTHS_ARATH RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi|5921663|gb|AAD56290.1|AF162279_1 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|9454559|gb|AAF87882.1|AC012561_15 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|12322329|gb|AAG51185.1|AC079279_6 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|15451114|gb|AAK96828.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|20148441|gb|AAM10111.1| 10-formyltetrahydrofolate synthetase [Arabidopsis thaliana] gi|332194434|gb|AEE32555.1| Formate--tetrahydrofolate ligase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2507455|sp|P28723.3|FTHS_SPIOL RecName: Full=Formate--tetrahydrofolate ligase; AltName: Full=10-formyletrahydrofolate synthetase; Short=FHS; Short=FTHFS; AltName: Full=Formyltetrahydrofolate synthetase gi|170145|gb|AAA34046.1| 10-formyltetrahydrofolate synthetase [Spinacia oleracea] Back     alignment and taxonomy information
>gi|224073194|ref|XP_002304017.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] gi|222841449|gb|EEE78996.1| 10-formyltetrahydrofolate synthetase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449462581|ref|XP_004149019.1| PREDICTED: formate--tetrahydrofolate ligase-like [Cucumis sativus] gi|449502199|ref|XP_004161571.1| PREDICTED: formate--tetrahydrofolate ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356536528|ref|XP_003536789.1| PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max] Back     alignment and taxonomy information
>gi|356576871|ref|XP_003556553.1| PREDICTED: formate--tetrahydrofolate ligase-like [Glycine max] Back     alignment and taxonomy information
>gi|242044850|ref|XP_002460296.1| hypothetical protein SORBIDRAFT_02g026140 [Sorghum bicolor] gi|241923673|gb|EER96817.1| hypothetical protein SORBIDRAFT_02g026140 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
TAIR|locus:2008101 634 THFS "10-formyltetrahydrofolat 0.972 0.777 0.831 4.2e-221
DICTYBASE|DDB_G0290397 638 fthS "formyltetrahydrofolate s 0.962 0.764 0.650 4.2e-166
UNIPROTKB|F5H2F4 1020 MTHFD1 "C-1-tetrahydrofolate s 0.958 0.476 0.652 3.1e-163
UNIPROTKB|G3V2B8 935 MTHFD1 "C-1-tetrahydrofolate s 0.958 0.519 0.652 3.1e-163
UNIPROTKB|P11586 935 MTHFD1 "C-1-tetrahydrofolate s 0.958 0.519 0.652 3.1e-163
UNIPROTKB|F1SA74 930 MTHFD1 "Uncharacterized protei 0.960 0.523 0.649 5.7e-162
UNIPROTKB|A4FUD0 935 MTHFD1 "MTHFD1 protein" [Bos t 0.960 0.520 0.641 3.1e-161
MGI|MGI:1342005 935 Mthfd1 "methylenetetrahydrofol 0.960 0.520 0.641 2.2e-160
UNIPROTKB|E2R2W7 935 MTHFD1 "Uncharacterized protei 0.958 0.519 0.640 2.8e-160
UNIPROTKB|F1PYV1 983 MTHFD1 "Uncharacterized protei 0.958 0.494 0.640 2.8e-160
TAIR|locus:2008101 THFS "10-formyltetrahydrofolate synthetase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2135 (756.6 bits), Expect = 4.2e-221, P = 4.2e-221
 Identities = 410/493 (83%), Positives = 434/493 (88%)

Query:     4 SKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDEL 63
             S + RKL+VVSPVPADIDIANSVEPLHISEIA++LN+ P HYDLYGKYKAKVLLS  DEL
Sbjct:     2 SSSTRKLEVVSPVPADIDIANSVEPLHISEIAKDLNINPLHYDLYGKYKAKVLLSAFDEL 61

Query:    64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXX 123
             +G  DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA+LDKKVVTCLRQPSQGPTFGIK  
Sbjct:    62 QGQEDGYYVVVGGITPTPLGEGKSTTTVGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGG 121

Query:   124 XXXXXYSQVIPMDEFNLHLTGDIHXXXXXXXXXXXXXXXRIFHEASQSDKALFNRLCPPN 183
                  YSQVIPMDEFNLHLTGDIH               RIFHE SQSDKALFNRLCPPN
Sbjct:   122 AAGGGYSQVIPMDEFNLHLTGDIHAITASNNLLAAAIDTRIFHETSQSDKALFNRLCPPN 181

Query:   184 KEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLR 243
             KEG+RSFS+IMFRRL KLGISKT PE+LTPEEI +FARLDIDPASITWRRVMDVNDRFLR
Sbjct:   182 KEGKRSFSDIMFRRLTKLGISKTSPEELTPEEIKKFARLDIDPASITWRRVMDVNDRFLR 241

Query:   244 KITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITA 303
             KITIGQGPEEKGM RETGFDISVASEIMAVLALTTSL DMRERLGKMVIGNSKAGDPITA
Sbjct:   242 KITIGQGPEEKGMTRETGFDISVASEIMAVLALTTSLGDMRERLGKMVIGNSKAGDPITA 301

Query:   304 DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG 363
             DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG
Sbjct:   302 DDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPG 361

Query:   364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHA 423
             GFVVTEAGFG+DIG EKFMNIKCRYSGLTPQCA++VAT+RALKMHGGGP VVAG+PLD A
Sbjct:   362 GFVVTEAGFGSDIGTEKFMNIKCRYSGLTPQCAIVVATVRALKMHGGGPDVVAGRPLDRA 421

Query:   424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKXXXXXXXXXXXXXXXXXX 483
             Y++ENV+LVEAGCVNLA+HI+NTKAYG NV+VAVNMFATD++                  
Sbjct:   422 YVSENVSLVEAGCVNLAKHISNTKAYGVNVIVAVNMFATDTEAELNAVRKFSMDAGAFDA 481

Query:   484 VVCSHHAHGGKGA 496
             VVCSHHAH GKGA
Sbjct:   482 VVCSHHAHSGKGA 494
GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
DICTYBASE|DDB_G0290397 fthS "formyltetrahydrofolate synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F5H2F4 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2B8 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P11586 MTHFD1 "C-1-tetrahydrofolate synthase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SA74 MTHFD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A4FUD0 MTHFD1 "MTHFD1 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1342005 Mthfd1 "methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2W7 MTHFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYV1 MTHFD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R8P0C1TC_PONAB6, ., 3, ., 4, ., 30.70280.96050.5208yesno
B7VSJ2FTHS_VIBSL6, ., 3, ., 4, ., 30.50760.81650.7113yesno
P11586C1TC_HUMAN6, ., 3, ., 4, ., 30.70690.96050.5208yesno
P28723FTHS_SPIOL6, ., 3, ., 4, ., 30.88860.97430.7755N/Ano
A4FL80FTHS_SACEN6, ., 3, ., 4, ., 30.50200.83430.7486yesno
Q9SPK5FTHS_ARATH6, ., 3, ., 4, ., 30.90260.97230.7776yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.40.983
3rd Layer3.5.4.90.824
3rd Layer3.5.40.766
3rd Layer1.5.10.766
3rd Layer6.3.4.30.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
FTHFS1
10-formyltetrahydrofolate synthetase (EC-6.3.4.3) (636 aa)
(Populus trichocarpa)
Predicted Functional Partners:
GART
hypothetical protein (215 aa)
•    •• 0.948
gw1.II.1126.1
tetrahydrofolate dehydrogenase/cyclohydrolase (EC-6.3.4.3) (290 aa)
•• • •• 0.947
SHMT6
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
    ••• 0.928
SHMT1
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
    ••• 0.928
gdcT1
precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)
•  • •• 0.927
SHMT3
precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)
    ••• 0.927
SHMT2
precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)
    ••• 0.926
SHMT7
precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)
    ••• 0.926
gdcT2
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)
•  • •• 0.926
SHMT8
serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa)
    ••• 0.926

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
PLN02759 637 PLN02759, PLN02759, Formate--tetrahydrofolate liga 0.0
PTZ00386 625 PTZ00386, PTZ00386, formyl tetrahydrofolate synthe 0.0
pfam01268 557 pfam01268, FTHFS, Formate--tetrahydrofolate ligase 0.0
cd00477 524 cd00477, FTHFS, Formyltetrahydrofolate synthetase 0.0
COG2759 554 COG2759, MIS1, Formyltetrahydrofolate synthetase [ 0.0
PRK13505 557 PRK13505, PRK13505, formate--tetrahydrofolate liga 0.0
PRK13506 578 PRK13506, PRK13506, formate--tetrahydrofolate liga 0.0
PRK13507 587 PRK13507, PRK13507, formate--tetrahydrofolate liga 1e-180
>gnl|CDD|178359 PLN02759, PLN02759, Formate--tetrahydrofolate ligase Back     alignment and domain information 
 Score =  998 bits (2582), Expect = 0.0
 Identities = 435/496 (87%), Positives = 465/496 (93%)

Query: 1   MASSKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVL 60
           M  S + RKL+V SPVPADIDIA SVEPLHISEIA+ L L P+ YDLYGKYKAKVLLSV 
Sbjct: 1   MTMSSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVR 60

Query: 61  DELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120
           D L G+ DGYYVVV GITPTPLGEGKSTTT+GLCQALGA+LDKKVVTCLRQPSQGPTFGI
Sbjct: 61  DRLAGAPDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGI 120

Query: 121 KGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLC 180
           KGGAAGGGYSQVIPM+EFNLHLTGDIHAITAANNLLAAAIDTR+FHEA+QSDKALFNRLC
Sbjct: 121 KGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTRVFHEATQSDKALFNRLC 180

Query: 181 PPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDR 240
           P NKEG+RSF+ +MFRRLKKLGISKT P++LTPEE  +FARLDIDPASITWRRVMDVNDR
Sbjct: 181 PANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDR 240

Query: 241 FLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDP 300
           FLRKIT+GQGPEEKGM RETGFDI+VASEIMAVLALTTSLADMRERLGKMVIGNSKAG+P
Sbjct: 241 FLRKITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEP 300

Query: 301 ITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLV 360
           +TADDLGVGGALTVLMKDAI+PTLMQTLEGTPVLVHAGPFANIAHGNSSIVAD+IALKLV
Sbjct: 301 VTADDLGVGGALTVLMKDAIHPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLV 360

Query: 361 GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPL 420
           GPGGFVVTEAGFGADIG EKFMNIKCRYSGL PQCAVIVAT+RALKMHGGGP VVAGKPL
Sbjct: 361 GPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVRALKMHGGGPAVVAGKPL 420

Query: 421 DHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGA 480
           DHAY  ENV LVEAGCVNLARHI NTK+YG NVVVA+NMFATD++AEL AVR AA+AAGA
Sbjct: 421 DHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGA 480

Query: 481 FDAVVCSHHAHGGKGA 496
           FDAV+C+HHAHGGKGA
Sbjct: 481 FDAVLCTHHAHGGKGA 496

Length = 637
>gnl|CDD|240394 PTZ00386, PTZ00386, formyl tetrahydrofolate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase Back     alignment and domain information
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate Back     alignment and domain information
>gnl|CDD|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>gnl|CDD|237404 PRK13506, PRK13506, formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>gnl|CDD|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 507
PLN02759 637 Formate--tetrahydrofolate ligase 100.0
PTZ00386 625 formyl tetrahydrofolate synthetase; Provisional 100.0
PRK13507 587 formate--tetrahydrofolate ligase; Provisional 100.0
KOG4230 935 consensus C1-tetrahydrofolate synthase [Coenzyme t 100.0
PF01268 557 FTHFS: Formate--tetrahydrofolate ligase; InterPro: 100.0
COG2759 554 MIS1 Formyltetrahydrofolate synthetase [Nucleotide 100.0
PRK13506 578 formate--tetrahydrofolate ligase; Provisional 100.0
PRK13505 557 formate--tetrahydrofolate ligase; Provisional 100.0
cd00477 524 FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca 100.0
TIGR03029274 EpsG chain length determinant protein tyrosine kin 97.08
CHL00175281 minD septum-site determining protein; Validated 96.41
TIGR01007204 eps_fam capsular exopolysaccharide family. This mo 96.4
PRK11519719 tyrosine kinase; Provisional 96.28
TIGR01005754 eps_transp_fam exopolysaccharide transport protein 95.96
TIGR03018207 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t 95.9
PRK09841726 cryptic autophosphorylating protein tyrosine kinas 95.77
PRK13705388 plasmid-partitioning protein SopA; Provisional 95.7
PHA02519387 plasmid partition protein SopA; Reviewed 95.45
TIGR01968261 minD_bact septum site-determining protein MinD. Th 95.44
cd02033329 BchX Chlorophyllide reductase converts chlorophyll 95.43
TIGR03453387 partition_RepA plasmid partitioning protein RepA. 95.2
PRK13869405 plasmid-partitioning protein RepA; Provisional 95.19
TIGR00347166 bioD dethiobiotin synthase. Dethiobiotin synthase 95.14
COG0489265 Mrp ATPases involved in chromosome partitioning [C 94.96
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 94.78
cd0198399 Fer4_NifH The Fer4_NifH superfamily contains a var 94.42
cd00550254 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). 94.33
cd02037169 MRP-like MRP (Multiple Resistance and pH adaptatio 93.96
cd02117212 NifH_like This family contains the NifH (iron prot 93.64
cd02036179 MinD Bacterial cell division requires the formatio 93.61
PRK13185270 chlL protochlorophyllide reductase iron-sulfur ATP 93.4
PF02367123 UPF0079: Uncharacterised P-loop hydrolase UPF0079; 93.35
PRK00698205 tmk thymidylate kinase; Validated 93.22
COG2894272 MinD Septum formation inhibitor-activating ATPase 93.19
cd02040270 NifH NifH gene encodes component II (iron protein) 92.74
PRK13230279 nitrogenase reductase-like protein; Reviewed 92.52
TIGR01969251 minD_arch cell division ATPase MinD, archaeal. Thi 92.46
PLN02924220 thymidylate kinase 92.42
PF02374305 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_ 92.28
TIGR01281268 DPOR_bchL light-independent protochlorophyllide re 92.25
TIGR00064272 ftsY signal recognition particle-docking protein F 92.05
TIGR03815322 CpaE_hom_Actino helicase/secretion neighborhood Cp 91.85
TIGR00041195 DTMP_kinase thymidylate kinase. Function: phosphor 91.77
TIGR01287275 nifH nitrogenase iron protein. This model describe 91.63
cd01672200 TMPK Thymidine monophosphate kinase (TMPK), also k 91.55
PRK13973213 thymidylate kinase; Provisional 91.48
PRK10037250 cell division protein; Provisional 91.33
COG0125208 Tmk Thymidylate kinase [Nucleotide transport and m 91.25
PF01656195 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai 91.22
PHA02518211 ParA-like protein; Provisional 91.21
PRK13235274 nifH nitrogenase reductase; Reviewed 91.11
PRK00300205 gmk guanylate kinase; Provisional 91.1
cd02032267 Bchl_like This family of proteins contains bchL an 90.79
PRK11670369 antiporter inner membrane protein; Provisional 90.76
PRK00090222 bioD dithiobiotin synthetase; Reviewed 90.72
TIGR00150133 HI0065_YjeE ATPase, YjeE family. Members of this f 90.7
PF09140261 MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi 90.45
PRK13232273 nifH nitrogenase reductase; Reviewed 90.42
PRK10646153 ADP-binding protein; Provisional 90.41
PRK13234295 nifH nitrogenase reductase; Reviewed 90.33
TIGR03371246 cellulose_yhjQ cellulose synthase operon protein Y 89.91
CHL00072290 chlL photochlorophyllide reductase subunit L 89.73
cd02035217 ArsA ArsA ATPase functionas as an efflux pump loca 89.43
PRK13768253 GTPase; Provisional 89.16
PRK04296190 thymidine kinase; Provisional 89.0
COG0802149 Predicted ATPase or kinase [General function predi 88.96
TIGR02016296 BchX chlorophyllide reductase iron protein subunit 88.92
PRK13231264 nitrogenase reductase-like protein; Reviewed 88.9
PF13500199 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R 88.64
PRK10416318 signal recognition particle-docking protein FtsY; 88.61
PRK13976209 thymidylate kinase; Provisional 88.52
PRK13233275 nifH nitrogenase reductase; Reviewed 88.46
COG0003322 ArsA Predicted ATPase involved in chromosome parti 88.2
PRK10818270 cell division inhibitor MinD; Provisional 88.17
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 87.9
cd03110179 Fer4_NifH_child This protein family's function is 87.8
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 87.75
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 87.57
PF02223186 Thymidylate_kin: Thymidylate kinase; InterPro: IPR 87.55
PRK13236296 nitrogenase reductase; Reviewed 86.98
COG1149284 MinD superfamily P-loop ATPase containing an inser 86.86
PRK08233182 hypothetical protein; Provisional 86.61
cd04165224 GTPBP1_like GTPBP1-like. Mammalian GTP binding pro 86.48
PRK05480209 uridine/cytidine kinase; Provisional 86.39
cd03111106 CpaE_like This protein family consists of proteins 86.38
PRK14974336 cell division protein FtsY; Provisional 86.36
cd02042104 ParA ParA and ParB of Caulobacter crescentus belon 85.54
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 85.49
PRK12374231 putative dithiobiotin synthetase; Provisional 85.43
cd02025220 PanK Pantothenate kinase (PanK) catalyzes the phos 85.22
PF06564243 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p 85.17
PF13614157 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ 84.65
PRK10867433 signal recognition particle protein; Provisional 84.56
cd03115173 SRP The signal recognition particle (SRP) mediates 84.49
PRK00131175 aroK shikimate kinase; Reviewed 84.33
COG1192259 Soj ATPases involved in chromosome partitioning [C 84.26
PRK07933213 thymidylate kinase; Validated 84.06
PRK13849231 putative crown gall tumor protein VirC1; Provision 83.73
PF02421156 FeoB_N: Ferrous iron transport protein B; InterPro 83.44
PRK00889175 adenylylsulfate kinase; Provisional 83.19
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 83.06
COG1797451 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme 83.05
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 82.93
PRK06278476 cobyrinic acid a,c-diamide synthase; Validated 82.83
PRK10436462 hypothetical protein; Provisional 82.16
KOG0635207 consensus Adenosine 5'-phosphosulfate kinase [Inor 81.34
PRK00771437 signal recognition particle protein Srp54; Provisi 81.22
PRK03846198 adenylylsulfate kinase; Provisional 80.61
smart00763361 AAA_PrkA PrkA AAA domain. This is a family of PrkA 80.54
TIGR00379449 cobB cobyrinic acid a,c-diamide synthase. This mod 80.49
PF03029238 ATP_bind_1: Conserved hypothetical ATP binding pro 80.28
PTZ00301210 uridine kinase; Provisional 80.08
TIGR00475 581 selB selenocysteine-specific elongation factor Sel 80.06
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 80.01
>PLN02759 Formate--tetrahydrofolate ligase Back     alignment and domain information 
Probab=100.00  E-value=6.4e-238  Score=1854.71  Aligned_cols=502  Identities=86%  Similarity=1.311  Sum_probs=494.0

Q ss_pred             CCCccccccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCC
Q 010555            4 SKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLG   83 (507)
Q Consensus         4 ~~~~~~l~~~~pm~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~G   83 (507)
                      +.+-.++.++.||||||||||+++++||++||+++||++|+|||||+|||||+++++++++++|+|||||||||||||+|
T Consensus         4 ~~~~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP~G   83 (637)
T PLN02759          4 SSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTPLG   83 (637)
T ss_pred             cCCCCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCChhhhccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCCCC
Confidence            44556778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhHhhHHHHHhhhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhh
Q 010555           84 EGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTR  163 (507)
Q Consensus        84 EGKTTttIGL~qaL~~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~  163 (507)
                      ||||||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||+|+||||
T Consensus        84 EGKTTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~  163 (637)
T PLN02759         84 EGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTR  163 (637)
T ss_pred             CCchhHHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999656999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeecccccccccc
Q 010555          164 IFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLR  243 (507)
Q Consensus       164 i~~~n~~~~~~l~~rl~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR  243 (507)
                      |||||+|+|++||+||||..++|+|+|+++|+|||+||||+|||||+||||||++|++|+|||++|+|+||||||||+||
T Consensus       164 i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD~NDR~LR  243 (637)
T PLN02759        164 VFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRFLR  243 (637)
T ss_pred             HhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeeccccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccCCCCCCcceecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcc
Q 010555          244 KITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPT  323 (507)
Q Consensus       244 ~I~iGlg~~~~G~~re~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPN  323 (507)
                      +|+||+|++++|+|||+|||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||
T Consensus       244 ~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAmt~LLkDAikPN  323 (637)
T PLN02759        244 KITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTVLMKDAIHPT  323 (637)
T ss_pred             ceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhHHHHHHhhhCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecCceeEEeccCcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeeh
Q 010555          324 LMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIR  403 (507)
Q Consensus       324 LvQTlEgtPa~VHgGPFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvR  403 (507)
                      ||||+|||||||||||||||||||||||||++||||+|.+||||||||||||||||||||||||.+||+|||+|||||||
T Consensus       324 LvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaTvR  403 (637)
T PLN02759        324 LMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVR  403 (637)
T ss_pred             ceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEEEEEeehH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccCCCCCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 010555          404 ALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDA  483 (507)
Q Consensus       404 ALK~HGG~~~~~~g~pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~  483 (507)
                      |||||||++.++||+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|+++|+.++
T Consensus       404 ALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~  483 (637)
T PLN02759        404 ALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDA  483 (637)
T ss_pred             HHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999996459


Q ss_pred             EEccccccCchhhHHHHHhhhh
Q 010555          484 VVCSHHAHGGKGAFKEPVRMLH  505 (507)
Q Consensus       484 ~~s~~wa~GGeGa~~LA~~v~~  505 (507)
                      ++|+||++||+|++|||++|++
T Consensus       484 ~~~~~wa~GGeGa~eLA~~Vv~  505 (637)
T PLN02759        484 VLCTHHAHGGKGAVDLGEAVQK  505 (637)
T ss_pred             EEechhhcccHHHHHHHHHHHH
Confidence            9999999999999999999985

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional Back     alignment and domain information
>PRK13507 formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6 Back     alignment and domain information
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13506 formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>PRK13505 formate--tetrahydrofolate ligase; Provisional Back     alignment and domain information
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate Back     alignment and domain information
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG Back     alignment and domain information
>CHL00175 minD septum-site determining protein; Validated Back     alignment and domain information
>TIGR01007 eps_fam capsular exopolysaccharide family Back     alignment and domain information
>PRK11519 tyrosine kinase; Provisional Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PRK13705 plasmid-partitioning protein SopA; Provisional Back     alignment and domain information
>PHA02519 plasmid partition protein SopA; Reviewed Back     alignment and domain information
>TIGR01968 minD_bact septum site-determining protein MinD Back     alignment and domain information
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring Back     alignment and domain information
>TIGR03453 partition_RepA plasmid partitioning protein RepA Back     alignment and domain information
>PRK13869 plasmid-partitioning protein RepA; Provisional Back     alignment and domain information
>TIGR00347 bioD dethiobiotin synthase Back     alignment and domain information
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain Back     alignment and domain information
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) Back     alignment and domain information
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily Back     alignment and domain information
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase Back     alignment and domain information
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell Back     alignment and domain information
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional Back     alignment and domain information
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop Back     alignment and domain information
>PRK00698 tmk thymidylate kinase; Validated Back     alignment and domain information
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] Back     alignment and domain information
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase Back     alignment and domain information
>PRK13230 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>TIGR01969 minD_arch cell division ATPase MinD, archaeal Back     alignment and domain information
>PLN02924 thymidylate kinase Back     alignment and domain information
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B Back     alignment and domain information
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein Back     alignment and domain information
>TIGR00041 DTMP_kinase thymidylate kinase Back     alignment and domain information
>TIGR01287 nifH nitrogenase iron protein Back     alignment and domain information
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor Back     alignment and domain information
>PRK13973 thymidylate kinase; Provisional Back     alignment and domain information
>PRK10037 cell division protein; Provisional Back     alignment and domain information
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases Back     alignment and domain information
>PHA02518 ParA-like protein; Provisional Back     alignment and domain information
>PRK13235 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>cd02032 Bchl_like This family of proteins contains bchL and chlL Back     alignment and domain information
>PRK11670 antiporter inner membrane protein; Provisional Back     alignment and domain information
>PRK00090 bioD dithiobiotin synthetase; Reviewed Back     alignment and domain information
>TIGR00150 HI0065_YjeE ATPase, YjeE family Back     alignment and domain information
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments Back     alignment and domain information
>PRK13232 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>PRK10646 ADP-binding protein; Provisional Back     alignment and domain information
>PRK13234 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ Back     alignment and domain information
>CHL00072 chlL photochlorophyllide reductase subunit L Back     alignment and domain information
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell Back     alignment and domain information
>PRK13768 GTPase; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>COG0802 Predicted ATPase or kinase [General function prediction only] Back     alignment and domain information
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X Back     alignment and domain information
>PRK13231 nitrogenase reductase-like protein; Reviewed Back     alignment and domain information
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK13976 thymidylate kinase; Provisional Back     alignment and domain information
>PRK13233 nifH nitrogenase reductase; Reviewed Back     alignment and domain information
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK10818 cell division inhibitor MinD; Provisional Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>cd03110 Fer4_NifH_child This protein family's function is unkown Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2 Back     alignment and domain information
>PRK13236 nitrogenase reductase; Reviewed Back     alignment and domain information
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>cd04165 GTPBP1_like GTPBP1-like Back     alignment and domain information
>PRK05480 uridine/cytidine kinase; Provisional Back     alignment and domain information
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>PRK12374 putative dithiobiotin synthetase; Provisional Back     alignment and domain information
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway Back     alignment and domain information
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon Back     alignment and domain information
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK07933 thymidylate kinase; Validated Back     alignment and domain information
>PRK13849 putative crown gall tumor protein VirC1; Provisional Back     alignment and domain information
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK03846 adenylylsulfate kinase; Provisional Back     alignment and domain information
>smart00763 AAA_PrkA PrkA AAA domain Back     alignment and domain information
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase Back     alignment and domain information
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity Back     alignment and domain information
>PTZ00301 uridine kinase; Provisional Back     alignment and domain information
>TIGR00475 selB selenocysteine-specific elongation factor SelB Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
1fpm_A 557 Monovalent Cation Binding Sites In N10-formyltetrah 7e-72
1eg7_A 557 The Crystal Structure Of Formyltetrahydrofolate Syn 4e-71
3do6_A 543 Crystal Structure Of Putative Formyltetrahydrofolat 4e-57
2eo2_A71 Solution Structure Of The Insertion Region (510-573 5e-16
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In N10-formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557 Back     alignment and structure 
Iteration: 1

 Score =  268 bits (684), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 133/244 (54%), Positives = 169/244 (69%), Gaps = 11/244 (4%)
Query: 222 LDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLA 281
           L+IDP +ITWRRV+D+NDR LR I IG G +  G+ RETGFDISVASE+MA L L + L 
Sbjct: 157 LNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLM 216
Query: 282 DMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFA 341
           D++ER  ++V+G +  G P+TA DL   G++ +LMKDAI P L+QTLE TP  +H GPFA
Sbjct: 217 DLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFA 276
Query: 342 NIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVAT 401
           NIAHG +SI+A K ALKL     +VVTEAGFGAD+GAEKF ++KCRY+G  P   VIVAT
Sbjct: 277 NIAHGCNSIIATKTALKL---ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVAT 333
Query: 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA 461
           +RALKMHGG P+             EN+  +  G  NL +HI N   +G   VVA+N F 
Sbjct: 334 VRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFP 385
Query: 462 TDSK 465
           TD++
Sbjct: 386 TDTE 389
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase From Moorella Thermoacetica Length = 557 Back     alignment and structure
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A Resolution Length = 543 Back     alignment and structure
>pdb|2EO2|A Chain A, Solution Structure Of The Insertion Region (510-573) Of Fthfs Domain From Mouse Methylenetetrahydrofolate Dehydrogenase (Nadp+ Dependent) 1-Like Protein Length = 71 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
3pzx_A 557 Formate--tetrahydrofolate ligase; HET: TOE; 2.20A 0.0
3do6_A 543 Formate--tetrahydrofolate ligase; TM1766, putative 0.0
2eo2_A71 Adult MALE hypothalamus cDNA, riken FULL-length en 2e-37
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} Length = 543 Back     alignment and structure
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 71 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
3do6_A 543 Formate--tetrahydrofolate ligase; TM1766, putative 100.0
3pzx_A 557 Formate--tetrahydrofolate ligase; HET: TOE; 2.20A 100.0
2eo2_A71 Adult MALE hypothalamus cDNA, riken FULL-length en 99.96
3cio_A299 ETK, tyrosine-protein kinase ETK; WZC, escherichia 97.2
3bfv_A271 CAPA1, CAPB2, membrane protein CAPA1, protein tyro 97.13
3la6_A286 Tyrosine-protein kinase WZC; P-loop protein, nucle 96.78
3zq6_A324 Putative arsenical pump-driving ATPase; tail-ancho 95.96
1hyq_A263 MIND, cell division inhibitor (MIND-1); MINC, FTSZ 95.89
1g3q_A237 MIND ATPase, cell division inhibitor; alpha-beta-a 95.82
3q9l_A260 Septum site-determining protein MIND; ATPase, bact 95.76
3ea0_A245 ATPase, para family; alpha-beta-alpha sandwich, st 95.48
3end_A307 Light-independent protochlorophyllide reductase ir 95.23
1byi_A224 Dethiobiotin synthase; biotin synthesis, cyclo-lig 95.05
2woo_A329 ATPase GET3; tail-anchored, membrane protein, targ 95.05
4tmk_A213 Protein (thymidylate kinase); ATP:DTMP phosphotran 94.88
2ph1_A262 Nucleotide-binding protein; alpha-beta protein, st 94.86
3k9g_A267 PF-32 protein; ssgcid, SBRI, decode biostructures, 94.77
1wcv_1257 SOJ, segregation protein; ATPase, bacterial, chrom 94.64
2woj_A354 ATPase GET3; tail-anchored, membrane protein, targ 94.58
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 94.46
3ld9_A223 DTMP kinase, thymidylate kinase; ssgcid, NIH, niai 94.33
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 94.24
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 94.16
3ug7_A349 Arsenical pump-driving ATPase; tail-anchored, memb 94.08
3igf_A374 ALL4481 protein; two-domained protein consisting o 93.42
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 93.34
2oze_A298 ORF delta'; para, walker type atpases, DNA segrega 93.22
3fkq_A373 NTRC-like two-domain protein; RER070207001320, str 93.21
4dzz_A206 Plasmid partitioning protein PARF; deviant walker 93.04
3fwy_A314 Light-independent protochlorophyllide reductase I 92.86
1ihu_A 589 Arsenical pump-driving ATPase; aluminum fluoride, 92.69
3kjh_A254 CO dehydrogenase/acetyl-COA synthase complex, acce 92.65
3v9p_A227 DTMP kinase, thymidylate kinase; ssgcid, STRU geno 92.45
3io3_A348 DEHA2D07832P; chaperone, membrane traffic, ATPase; 92.4
1cp2_A269 CP2, nitrogenase iron protein; oxidoreductase; 1.9 92.36
3iqw_A334 Tail-anchored protein targeting factor GET3; ATPas 92.34
3ez2_A398 Plasmid partition protein A; type IA, DNA binding, 92.32
3ez9_A403 Para; DNA binding, winged-HTH, partition, biosynth 92.22
2afh_E289 Nitrogenase iron protein 1; nitrogen fixation, iro 92.09
3of5_A228 Dethiobiotin synthetase; structural genomics, cent 92.07
3cwq_A209 Para family chromosome partitioning protein; alpha 92.02
3qxc_A242 Dethiobiotin synthetase; DTBS, structural genomics 91.59
2xj4_A286 MIPZ; replication, cell division, ATPase, WACA; 1. 91.27
3fgn_A251 Dethiobiotin synthetase; biotin biosynthesis, BIOD 91.03
2xxa_A433 Signal recognition particle protein; protein trans 90.97
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 90.84
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 90.48
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 90.44
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 89.89
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 89.14
3tmk_A216 Thymidylate kinase; phosphotransferase; HET: T5A; 89.04
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 88.85
1vma_A306 Cell division protein FTSY; TM0570, structural gen 88.01
3pg5_A361 Uncharacterized protein; structural genomics, PSI- 87.6
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 87.46
1xjc_A169 MOBB protein homolog; structural genomics, midwest 87.04
2ocp_A241 DGK, deoxyguanosine kinase; protein-nucleotide com 86.79
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 86.68
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 86.46
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 86.32
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 86.27
4hlc_A205 DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri 86.14
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 85.99
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 84.96
2obn_A349 Hypothetical protein; structural genomics, joint c 84.82
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 84.47
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 84.34
2efe_B181 Small GTP-binding protein-like; GEF, GTPase, VPS9, 84.01
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 83.98
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 83.9
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 83.68
2v3c_C432 SRP54, signal recognition 54 kDa protein; nucleoti 83.0
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 82.35
1a7j_A290 Phosphoribulokinase; transferase, calvin cycle; 2. 82.26
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 82.04
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 82.0
3a4m_A260 L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m 81.86
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 81.27
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 80.87
3t1o_A198 Gliding protein MGLA; G domain containing protein, 80.85
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 80.68
3hjn_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 80.58
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 80.08
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0 Back     alignment and structure
Probab=100.00  E-value=1.3e-214  Score=1652.78  Aligned_cols=413  Identities=47%  Similarity=0.758  Sum_probs=408.5

Q ss_pred             CCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHhhhcCCcEEE
Q 010555           28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT  107 (507)
Q Consensus        28 ~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~~~lgk~a~~  107 (507)
                      ++||.+||+++||++|||||||+|||||++++++|++++++|||||||||||||+|||||||||||+|||+ |+||++++
T Consensus         2 ~~pI~~iA~~lgi~~~~le~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~-~lgk~~~~   80 (543)
T 3do6_A            2 MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLN-RIGKKSIV   80 (543)
T ss_dssp             CCCHHHHHHHTTCCGGGEEEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred             CCCHHHHHHHcCCCHHHHHhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHH-hcCCeeEE
Confidence            78999999999999999999999999999999999998899999999999999999999999999999995 99999999


Q ss_pred             EecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCC
Q 010555          108 CLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGE  187 (507)
Q Consensus       108 ~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~~l~~rl~p~~~~g~  187 (507)
                      |||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||                   
T Consensus        81 ~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn-------------------  141 (543)
T 3do6_A           81 TLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN-------------------  141 (543)
T ss_dssp             EECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred             EEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHHHHHHHHHHhccC-------------------
Confidence            9999999999999999999999999999999999999999999999999999999999998                   


Q ss_pred             cchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcceecceeeeeh
Q 010555          188 RSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVA  267 (507)
Q Consensus       188 r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~re~gFdITvA  267 (507)
                                                       +|+|||++|+||||||||||+||+|+||+|++.||+|||||||||||
T Consensus       142 ---------------------------------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvA  188 (543)
T 3do6_A          142 ---------------------------------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAA  188 (543)
T ss_dssp             ---------------------------------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGG
T ss_pred             ---------------------------------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEeh
Confidence                                             79999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEeccCcccccccC
Q 010555          268 SEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGN  347 (507)
Q Consensus       268 SEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~VHgGPFANIAhG~  347 (507)
                      ||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||||||||||||||||
T Consensus       189 SEiMAILcLa~dl~DLk~Rlg~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGc  268 (543)
T 3do6_A          189 SEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGT  268 (543)
T ss_dssp             SHHHHHHHHCSSHHHHHHHHHTCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCB
T ss_pred             hhhhhHHHhcCCHHHHHHHhcCEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCCCCchhcccc
Q 010555          348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE  427 (507)
Q Consensus       348 nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~pL~~~~~~e  427 (507)
                      |||||||+||||+   ||||||||||||||||||||||||++||+||||||||||||||||||+++        ++|.+|
T Consensus       269 nSviAtk~ALkla---DyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~e  337 (543)
T 3do6_A          269 NSIIATKMAMKLS---EYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEE  337 (543)
T ss_dssp             CCHHHHHHHHHHC---SEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSC
T ss_pred             hHHHHHHHHHhcc---CeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCcc
Confidence            9999999999999   99999999999999999999999999999999999999999999999987        789999


Q ss_pred             CHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHHHHHhhhh
Q 010555          428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFKEPVRMLH  505 (507)
Q Consensus       428 nl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~LA~~v~~  505 (507)
                      |+++|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|+. +++|+||++||+|+++||++|++
T Consensus       338 nl~al~~G~~NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~s~~wa~GG~G~~~LA~~Vv~  414 (543)
T 3do6_A          338 NLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVR-VAVSEVFKKGSEGGVELAKAVAE  414 (543)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCE-EEEECHHHHGGGGSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEechhhccchhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999995 99999999999999999999986
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Back     alignment and structure
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Back     alignment and structure
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} Back     alignment and structure
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Back     alignment and structure
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Back     alignment and structure
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Back     alignment and structure
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Back     alignment and structure
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Back     alignment and structure
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Back     alignment and structure
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Back     alignment and structure
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Back     alignment and structure
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Back     alignment and structure
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Back     alignment and structure
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Back     alignment and structure
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Back     alignment and structure
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Back     alignment and structure
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} Back     alignment and structure
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Back     alignment and structure
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Back     alignment and structure
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Back     alignment and structure
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Back     alignment and structure
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Back     alignment and structure
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A Back     alignment and structure
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A Back     alignment and structure
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Back     alignment and structure
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} Back     alignment and structure
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Back     alignment and structure
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A Back     alignment and structure
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A Back     alignment and structure
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 507
d1eg7a_ 549 c.37.1.10 (A:) Formyltetrahydrofolate synthetase { 1e-176
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Length = 549 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

 Score =  506 bits (1304), Expect = e-176
 Identities = 223/478 (46%), Positives = 288/478 (60%), Gaps = 67/478 (14%)

Query: 19  DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGIT 78
           DI+IA + +   + E+A+ L ++ +  +LYGKYKAK+ L V   L+   DG  ++V  IT
Sbjct: 1   DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAIT 60

Query: 79  PTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEF 138
           PTP GEGK+TT+VGL  AL   L K+V+ CLR+PS GP+FGIKGGAAGGGY+QV+PM++ 
Sbjct: 61  PTPAGEGKTTTSVGLTDALAR-LGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDI 119

Query: 139 NLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRL 198
           NLH TGDIHA+T A+NLLAA +D  +                                  
Sbjct: 120 NLHFTGDIHAVTYAHNLLAAMVDNHLQQGN------------------------------ 149

Query: 199 KKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVR 258
                                  L+IDP +ITWRRV+D+N+R LR I IG G +  G+ R
Sbjct: 150 ----------------------VLNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPR 187

Query: 259 ETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKD 318
           ETGFDISVASE+MA L L + L D++ER  + V+G +  G P+TA DL   G++ +LMKD
Sbjct: 188 ETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGSMALLMKD 247

Query: 319 AINPTLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGA 378
           AI P L+QTLE TP  +H GPFANIAHG +SI+A K ALKL     +VVTEAGFGAD+GA
Sbjct: 248 AIKPNLVQTLENTPAFIHGGPFANIAHGCNSIIATKTALKL---ADYVVTEAGFGADLGA 304

Query: 379 EKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN 438
           EKF ++KCRY+G  P   VIVAT+RALKMHGG P              EN+  +  G  N
Sbjct: 305 EKFYDVKCRYAGFKPDATVIVATVRALKMHGGVP--------KSDLATENLEALREGFAN 356

Query: 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA 496
           L +HI N   +G   VVA+N F TD++AELN +      A    A V    A GG+G 
Sbjct: 357 LEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKA---GAEVALSWAKGGEGG 411

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
d1eg7a_ 549 Formyltetrahydrofolate synthetase {Moorella thermo 100.0
d1byia_224 Dethiobiotin synthetase {Escherichia coli [TaxId: 97.26
d1g3qa_237 Cell division regulator MinD {Archaeon Pyrococcus 96.51
d1hyqa_232 Cell division regulator MinD {Archaeon Archaeoglob 96.24
d1ihua1296 Arsenite-translocating ATPase ArsA {Escherichia co 96.22
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 95.79
d1ihua2279 Arsenite-translocating ATPase ArsA {Escherichia co 95.41
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 94.2
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 93.73
d2afhe1289 Nitrogenase iron protein {Azotobacter vinelandii [ 93.49
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 93.37
d1cp2a_269 Nitrogenase iron protein {Clostridium pasteurianum 92.48
d1b5ta_275 Methylenetetrahydrofolate reductase {Escherichia c 92.35
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 92.27
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 91.49
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 91.4
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 90.35
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 90.07
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 89.99
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 89.85
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 89.57
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 89.51
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 89.47
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 89.2
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 89.18
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 88.88
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 88.76
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 88.28
d1wb1a4179 Elongation factor SelB, N-terminal domain {Methano 86.25
d1okkd2207 GTPase domain of the signal recognition particle r 85.88
d1v93a_292 Methylenetetrahydrofolate reductase {Thermus therm 84.94
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 84.31
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 83.7
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 83.55
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 83.02
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 82.95
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 81.94
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 81.06
d1gg4a4214 UDP-murNac-tripeptide D-alanyl-D-alanine-adding en 80.73
d1ls1a2207 GTPase domain of the signal sequence recognition p 80.24
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=100.00  E-value=1.2e-211  Score=1640.86  Aligned_cols=420  Identities=54%  Similarity=0.898  Sum_probs=414.2

Q ss_pred             hHHHHccCCCCCHHHHHHHcCCCCcccccccCceeeechhhhhhhcCCCCCcEEEEeccCCCCCCCCcchhHhhHHHHHh
Q 010555           19 DIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG   98 (507)
Q Consensus        19 DieIa~~~~~~~I~~iA~~lgl~~~~le~YG~~kAKi~l~~l~~~~~~~~GklIlVTaitPTP~GEGKTTttIGL~qaL~   98 (507)
                      ||||||+++|+||++||+++||++|||||||+|||||+++++++++++|+|||||||||||||+|||||||||||+||| 
T Consensus         1 D~eIa~~~~~~~I~~ia~~~gl~~~~~~~yG~~kaKv~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~aL-   79 (549)
T d1eg7a_           1 DIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDAL-   79 (549)
T ss_dssp             CCSTTCCCCCCCHHHHHHTTTCCGGGEEESSSSCEEECTHHHHHHTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHH-
T ss_pred             ChhhHhhCCCCCHHHHHHHcCCCHHHHhhcCCcceEecHHHHHhhccCCCceEEEEEeCCCCCCCCCcceeHHhHHHHH-
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcCCcEEEEecCCCCCCccccccCCCCCCceeeecCcccccccchhhhHHHHHHhHHHHHHHhhhhccccCChhHhhhc
Q 010555           99 AFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNR  178 (507)
Q Consensus        99 ~~lgk~a~~~lRePSlGP~FGiKGGAaGGGysQViPmediNLHfTGD~HAItaA~NLlaA~iDn~i~~~n~~~~~~l~~r  178 (507)
                      +++||++++|||||||||||||||||||||||||+|||||||||||||||||||||||+|+|||||||+|          
T Consensus        80 ~~lgk~~~~~lRePSlGP~fGiKGGAaGGG~sqv~Pme~inLhftGD~hAitaA~NLl~A~idn~i~~gn----------  149 (549)
T d1eg7a_          80 ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN----------  149 (549)
T ss_dssp             HHTTCCEEEEECCCCSTHHHHTTCCCSEETTEEEECHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred             HHhCCceEEEEecCCCCCccccccCCCCCCeeeeecchhhhcccCCcHHHHHHHHHHHHHHHHhhhcccc----------
Confidence            6999999999999999999999999999999999999999999999999999999999999999999998          


Q ss_pred             cCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhhcCCCCCCceeeeeccccccccccceeeccCCCCCCcce
Q 010555          179 LCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVR  258 (507)
Q Consensus       179 l~p~~~~g~r~f~~~~~~rl~klgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~RvlD~NDR~LR~I~iGlg~~~~G~~r  258 (507)
                                                                +|+|||++|+||||||||||+||+|+||+|++.+|+||
T Consensus       150 ------------------------------------------~L~iDp~~I~w~Rv~D~NDR~LR~i~vglgg~~~G~~r  187 (549)
T d1eg7a_         150 ------------------------------------------VLNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPR  187 (549)
T ss_dssp             ------------------------------------------TTCBCGGGCCCCEEESSCCGGGSSEEESCSSTTSCCCE
T ss_pred             ------------------------------------------cCCCCCceeeeceeecchhhhhhheEEeccccCCCcce
Confidence                                                      79999999999999999999999999999999999999


Q ss_pred             ecceeeeehhhHHHHHHhcCCHHHHHHHhcCcEEeecCCCCceeeccccchhhHHHHhhhccCcccceeecCceeEEecc
Q 010555          259 ETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAG  338 (507)
Q Consensus       259 e~gFdITvASEiMAIL~La~dl~DLr~Rlg~ivVa~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~VHgG  338 (507)
                      |+|||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+|||||||||||||+||||+|||||
T Consensus       188 ~~gFdIT~ASEvMAIl~La~~l~DLr~Rlg~ivv~~~~~g~pv~a~DL~~~GAm~~LLkdAi~PNLvQT~EgtPa~vHgG  267 (549)
T d1eg7a_         188 ETGFDISVASEVMACLCLASDLMDLKERFSRKVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGG  267 (549)
T ss_dssp             EECEEEGGGSHHHHHHHHCSSHHHHHHHHHTCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEEEECCC
T ss_pred             ecccccchhhhheeeeeecCCHHHHHHhhcCEEeeecCCCCCcchhhcccchhHHHHHHHHHHhhhheeccCCceeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccccCchHHHHHHHHHhcCCCCeEEeecccccccccccccccccccCCCCcceEEEEeeehHHHhcCCCCCccCCC
Q 010555          339 PFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGK  418 (507)
Q Consensus       339 PFANIAhG~nSviAtk~ALklag~~dyVVTEAGFGaDlGaEKF~dIKCr~sgl~PdavVlVaTvRALK~HGG~~~~~~g~  418 (507)
                      |||||||||||||||++||+|+   ||||||||||||||||||||||||.+|++|||+|||||+||||||||+++     
T Consensus       268 PFANIAhG~nSviAt~~al~la---dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~-----  339 (549)
T d1eg7a_         268 PFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK-----  339 (549)
T ss_dssp             CCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHTTTCCG-----
T ss_pred             CccccccccchHHHHHHHhhcC---CeEEEeccccCCccchhhhccccccCCCCCceEEEEeehhhhhhcCCCCh-----
Confidence            9999999999999999999999   99999999999999999999999999999999999999999999999985     


Q ss_pred             CCchhccccCHHHHHHHhhhHHHHHHHHhccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEccccccCchhhHH
Q 010555          419 PLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAFK  498 (507)
Q Consensus       419 pL~~~~~~enl~al~~G~~NL~~HIen~~~fGvpvVVAiN~F~tDT~aEi~~v~~~~~~~G~~~~~~s~~wa~GGeGa~~  498 (507)
                         ++|.+||+++|++||+||+|||||+++||+|||||||+|++||++||++|+++|++.|++   .|.||++||+|++|
T Consensus       340 ---~~l~~eNl~Al~~G~~NL~rHIeNi~~fGlpvVVAIN~F~tDTd~Ei~~i~~~~~~~g~~---~a~~wa~GG~Ga~d  413 (549)
T d1eg7a_         340 ---SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAE---VALSWAKGGEGGLE  413 (549)
T ss_dssp             ---GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHTTTSEEE---EECCTTTGGGGGHH
T ss_pred             ---HHcCcccHHHHHHHHHHHHHHHHhhhhcCCCeEEEeccCCccchhHHHHHHHHHhhcCcc---eeeecccCccchHH
Confidence               789999999999999999999999999999999999999999999999999999999885   46789999999999


Q ss_pred             HHHhhhh
Q 010555          499 EPVRMLH  505 (507)
Q Consensus       499 LA~~v~~  505 (507)
                      ||++|++
T Consensus       414 LA~~Vv~  420 (549)
T d1eg7a_         414 LARKVLQ  420 (549)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999986
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Back     information, alignment and structure
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure