Citrus Sinensis ID: 010564

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
MNFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNKQPSESPVSSTTPSQSAKDYDFSSLTAGMFTKH
ccHHHHHHHHHHHHccccccccccccccccccEEccccEEEEccccccccccccccccEEccccccccHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHcccccccHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccc
MNFYVFMQILEGllklpenrecadckakgprwasvNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNekansyweaelppnydrvgIENFIRAKYEekrwvsrdgqanspprgleekasihwqrpgeksghgytdnsenlseerkhvqapstkdsvpaarislplpprgpdqvvaitkpqqtestvapagatnqssdanlavpppkvdfasdlfdmlsgdspnensseaasaddnLWAGFQSAVetstaekkdstkavesspqsatgiedlfkdspslatpsssekpqkdlKNDIMSLFEksnmvspfamHQQQLTMLAQQQSLLMAAAAksggdpkfsssfqlpvsngtnlpsnfgnqipgimmpgagtADLQKLMQAMSiapaqqvgagpADLQKLMQAMSmvpthqvaagpADIQKLMQAMsmapthqggnsvpfptssfptmgqvnpangvtstgtnkqpsespvssttpsqsakdydfssltagmftkh
MNFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAelppnydrVGIENFIRAKyeekrwvsrdgqanspprgleekasihwqrpgeksghgYTDNSENLSEERKHvqapstkdsvpaarislplpprgpDQVVAITKPQQTESTVapagatnqssdanlavPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVEtstaekkdstkavesspqsatgiedLFKDSPSlatpsssekpqkdLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTgtnkqpsespvssttpsqsakdydfssltagmftkh
MNFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPnensseaasaddnLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFamhqqqltmlaqqqsllmaaaaKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNKqpsespvssttpsqsAKDYDFSSLTAGMFTKH
**FYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWV*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
*****FM**LEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVS*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AGM****
MNFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRW*******************************************************VPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSG************ADDNLWAGFQSA*********************ATGIEDLFKDSP************KDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLM***********FSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVT***********************DYDFSSLTAGMFTKH
MNFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR*****************************************************************************************************************************************************************************************KDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVN********************************************
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MNFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNENSSEAASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVSNGTNLPSNFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNKQPSESPVSSTTPSQSAKDYDFSSLTAGMFTKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query507 2.2.26 [Sep-21-2011]
Q9FL69483 Probable ADP-ribosylation yes no 0.891 0.935 0.555 1e-135
Q0WQQ1232 Probable ADP-ribosylation no no 0.213 0.465 0.75 3e-47
Q5F413428 Stromal membrane-associat yes no 0.258 0.306 0.474 5e-34
Q7TN29428 Stromal membrane-associat yes no 0.258 0.306 0.460 7e-33
Q5EA00429 Stromal membrane-associat yes no 0.258 0.305 0.453 1e-32
Q8WU79429 Stromal membrane-associat yes no 0.258 0.305 0.453 1e-32
Q9UT34320 Uncharacterized protein C yes no 0.209 0.331 0.532 2e-30
Q91VZ6440 Stromal membrane-associat no no 0.191 0.220 0.564 3e-30
Q8IYB5467 Stromal membrane-associat no no 0.191 0.207 0.554 2e-29
P40529298 ADP-ribosylation factor G yes no 0.207 0.352 0.530 4e-28
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function desciption
 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 286/515 (55%), Positives = 339/515 (65%), Gaps = 63/515 (12%)

Query: 8   QILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 67
           +ILEGLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW
Sbjct: 17  KILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 76

Query: 68  LPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGL 127
           LPEQVAFIQSMGN+KANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR  +A SPPR +
Sbjct: 77  LPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRGEKARSPPR-V 135

Query: 128 EEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVV 187
           E++     +R G    HG++ +  NL EERK + A  T+++V A RI+LP+PP+GP QV+
Sbjct: 136 EQERRKSVERSGPGYEHGHSSSPVNLFEERKTIPASRTRNNVAATRINLPVPPQGPSQVI 195

Query: 188 AITKPQQT-ESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNENSSEA---- 242
              KPQQ  ES   P     Q+ +   A  PPKVDFA+DLF+MLS D    N+SEA    
Sbjct: 196 ---KPQQKMESAATPVEREKQAVNVAPASDPPKVDFATDLFNMLSMDDSTTNTSEATPGD 252

Query: 243 ASADDNLWAGFQSAVETSTAEKKDSTK--AVESSPQSATGIEDLFKDSPSLATPSSSEKP 300
             ADDN WAGFQSA    TAEK  + K     S P S++  EDLFKD+P+L T    ++ 
Sbjct: 253 TPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNLTT----QQA 308

Query: 301 QKDLKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGGDPKFSSSFQLPVS 360
            KD+K DIMSLFEK+N+VSPFAMHQQQ+ MLAQQQ+L MAAA  +GG P   +  Q  ++
Sbjct: 309 PKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKAAGGTPNGVN--QQAIA 366

Query: 361 NGTNLPS-NFGN----QIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAM 415
           N  N+ S N+ N    QIPG+  P  G ADLQKLMQ M++                    
Sbjct: 367 NALNVASANWSNPGGYQIPGMTNPVGGQADLQKLMQNMNMN------------------- 407

Query: 416 SMVPTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNK 475
                  +   PA  Q+              N++ +P+SSF TMGQ N  NG+T   T K
Sbjct: 408 -----ANMNTRPAQPQE--------------NTLQYPSSSFYTMGQANQVNGMTPNSTGK 448

Query: 476 QPSES---PVSSTTPSQSAKDYDFSSLTAGMFTKH 507
             S S   P S+T  SQS KD+DFSSL  GMFTKH
Sbjct: 449 PQSSSATQPTSTTPSSQSGKDFDFSSLMDGMFTKH 483
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q0WQQ1|AGD15_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1 Back     alignment and function description
>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9UT34|YIQ9_SCHPO Uncharacterized protein C824.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC824.09c PE=4 SV=1 Back     alignment and function description
>sp|Q91VZ6|SMAP1_MOUSE Stromal membrane-associated protein 1 OS=Mus musculus GN=Smap1 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|P40529|AGE2_YEAST ADP-ribosylation factor GTPase-activating protein effector protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AGE2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
359493891478 PREDICTED: probable ADP-ribosylation fac 0.891 0.945 0.635 1e-165
225461326475 PREDICTED: probable ADP-ribosylation fac 0.891 0.951 0.633 1e-163
224115066492 predicted protein [Populus trichocarpa] 0.905 0.932 0.641 1e-162
255580436482 Stromal membrane-associated protein, put 0.897 0.943 0.620 1e-156
359806292500 uncharacterized protein LOC100807561 [Gl 0.940 0.954 0.615 1e-155
224123040478 predicted protein [Populus trichocarpa] 0.889 0.943 0.622 1e-155
356543996484 PREDICTED: probable ADP-ribosylation fac 0.887 0.929 0.594 1e-151
449464762510 PREDICTED: probable ADP-ribosylation fac 0.893 0.888 0.571 1e-150
356549775481 PREDICTED: probable ADP-ribosylation fac 0.885 0.933 0.602 1e-148
356517205484 PREDICTED: probable ADP-ribosylation fac 0.907 0.950 0.578 1e-141
>gi|359493891|ref|XP_003634688.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 2 [Vitis vinifera] gi|302143074|emb|CBI20369.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 323/508 (63%), Positives = 371/508 (73%), Gaps = 56/508 (11%)

Query: 8   QILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 67
           +ILEGLLKLPENRECADCK+KGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW
Sbjct: 17  KILEGLLKLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 76

Query: 68  LPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGL 127
           LPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYE+KRW+ +DG+  S  +G 
Sbjct: 77  LPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWIPKDGKPRSTSQGR 136

Query: 128 EEKASIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQVV 187
           EEKAS HW RPG++ G G T NSEN  EE+K+VQAPS KD+ PA RISLP+PP+GP+ V 
Sbjct: 137 EEKASAHWHRPGDRGGSGNTSNSENSFEEKKNVQAPSIKDNGPATRISLPVPPKGPEPVA 196

Query: 188 AITKPQQT----ESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNENSSEAA 243
            I KP Q     E +V  A +  Q++D+   VPPPKVD+A+DLF+MLS D P EN SEAA
Sbjct: 197 PIPKPHQVTQKPEPSVPQAESAKQAADSTPVVPPPKVDYATDLFNMLSMDDPTENGSEAA 256

Query: 244 SADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKD 303
           SADDN WAGFQSA +TSTAEK    K +E + QS +GIEDLFKDSPS+  P++S+KPQKD
Sbjct: 257 SADDNAWAGFQSAEQTSTAEKTAPAKPIEGNTQSTSGIEDLFKDSPSI-MPAASDKPQKD 315

Query: 304 LKNDIMSLFEKSNMVSPFAMHQQQLTMLAQQQSLLMAAAAKSGG-DPKFSSSFQLPVSNG 362
           +KNDIMSLFEKSNMVSPF++HQQQL MLAQQQSLLMAAAAKS G  PKFS + Q   SNG
Sbjct: 316 VKNDIMSLFEKSNMVSPFSLHQQQLAMLAQQQSLLMAAAAKSTGVAPKFSINAQQHSSNG 375

Query: 363 TNLPS----NFGNQIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQAMSMV 418
           T+LP+    N G QIPG+MM  AG  D+QK MQA ++ P                     
Sbjct: 376 TDLPTQNWPNMGYQIPGMMMQAAGNNDMQKFMQAANMGP--------------------- 414

Query: 419 PTHQVAAGPADIQKLMQAMSMAPTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNKQPS 478
                                  TH  GNSVPF TSS  TMGQV P NGV +T  ++ PS
Sbjct: 415 -----------------------THPAGNSVPFATSSMYTMGQVAPTNGVATTSVSRPPS 451

Query: 479 ESPVSSTTPSQSAKDYDFSSLTAGMFTK 506
            S   +T P+Q  K+YDFSSLT GMF+K
Sbjct: 452 AS--PATPPTQPGKEYDFSSLTQGMFSK 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461326|ref|XP_002284562.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115066|ref|XP_002316931.1| predicted protein [Populus trichocarpa] gi|222859996|gb|EEE97543.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255580436|ref|XP_002531044.1| Stromal membrane-associated protein, putative [Ricinus communis] gi|223529372|gb|EEF31337.1| Stromal membrane-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359806292|ref|NP_001240964.1| uncharacterized protein LOC100807561 [Glycine max] gi|255635528|gb|ACU18115.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224123040|ref|XP_002330426.1| predicted protein [Populus trichocarpa] gi|222871811|gb|EEF08942.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356543996|ref|XP_003540442.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information
>gi|449464762|ref|XP_004150098.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356549775|ref|XP_003543266.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information
>gi|356517205|ref|XP_003527279.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
TAIR|locus:2162580483 AGD5 "AT5G54310" [Arabidopsis 0.850 0.892 0.511 2e-104
TAIR|locus:2090517232 AGD15 "AT3G17660" [Arabidopsis 0.213 0.465 0.75 4.5e-43
ZFIN|ZDB-GENE-060920-2483 smap1 "stromal membrane-associ 0.575 0.604 0.341 5.7e-38
WB|WBGene00012359495 W09D10.1 [Caenorhabditis elega 0.207 0.212 0.577 2.6e-36
CGD|CAL0003973387 orf19.1396 [Candida albicans ( 0.360 0.472 0.418 2.8e-36
ASPGD|ASPL0000049357565 AN1931 [Emericella nidulans (t 0.226 0.203 0.563 8.3e-36
UNIPROTKB|Q5F413428 SMAP2 "Stromal membrane-associ 0.321 0.380 0.420 1.7e-34
FB|FBgn0033349517 CG8243 [Drosophila melanogaste 0.571 0.560 0.325 1.7e-34
UNIPROTKB|Q8WU79429 SMAP2 "Stromal membrane-associ 0.258 0.305 0.460 7.1e-34
UNIPROTKB|A1EAA2446 SMAP1 "SMAP1 protein" [Canis l 0.443 0.504 0.354 9e-34
TAIR|locus:2162580 AGD5 "AT5G54310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
 Identities = 239/467 (51%), Positives = 288/467 (61%)

Query:     8 QILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 67
             +ILEGLLK PENRECADCK KGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW
Sbjct:    17 KILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 76

Query:    68 LPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRDGQANSPPRGL 127
             LPEQVAFIQSMGN+KANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSR  +A SPPR  
Sbjct:    77 LPEQVAFIQSMGNDKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVSRGEKARSPPRVE 136

Query:   128 EEKA-SIHWQRPGEKSGHGYTDNSENLSEERKHVQAPSTKDSVPAARISLPLPPRGPDQV 186
             +E+  S+    PG +  HG++ +  NL EERK + A  T+++V A RI+LP+PP+GP QV
Sbjct:   137 QERRKSVERSGPGYE--HGHSSSPVNLFEERKTIPASRTRNNVAATRINLPVPPQGPSQV 194

Query:   187 VAITKPQQT-ESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPXXXXXXXXXX 245
             +   KPQQ  ES   P     Q+ +   A  PPKVDFA+DLF+MLS D            
Sbjct:   195 I---KPQQKMESAATPVEREKQAVNVAPASDPPKVDFATDLFNMLSMDDSTTNTSEATPG 251

Query:   246 XXXL----WAGFQSAVETSTAEKKDSTKAVESS--PQSATGIEDLFKDSPSLATPSSSEK 299
                     WAGFQSA    TAEK  + K  ESS  P S++  EDLFKD+P+L T    ++
Sbjct:   252 DTPADDNSWAGFQSAGSGQTAEKIVTAKPAESSSPPASSSDFEDLFKDTPNLTT----QQ 307

Query:   300 PQKDLKNDIMSLFEKSNMVSPFXXXXXXXXXXXXXXXXXXXXXXKSGGDPKFSSSFQLPV 359
               KD+K DIMSLFEK+N+VSPF                       +GG P   +  Q  +
Sbjct:   308 APKDVKGDIMSLFEKTNIVSPFAMHQQQVAMLAQQQALYMAAAKAAGGTPNGVN--QQAI 365

Query:   360 SNGTNLPS-NFGN----QIPGIMMPGAGTADLQKLMQAMSIAPAQQVGAGPADLQKLMQA 414
             +N  N+ S N+ N    QIPG+  P  G ADLQKLMQ M++     +   PA  Q+    
Sbjct:   366 ANALNVASANWSNPGGYQIPGMTNPVGGQADLQKLMQNMNMNA--NMNTRPAQPQE--NT 421

Query:   415 MSMVPTHQVAAGPADIQKLMQAMSMAPTHQG---GNSVPFPTSSFPT 458
             +    +     G A+     Q   M P   G    +S   PTS+ P+
Sbjct:   422 LQYPSSSFYTMGQAN-----QVNGMTPNSTGKPQSSSATQPTSTTPS 463
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0010227 "floral organ abscission" evidence=IMP
GO:0032857 "activation of ARF GTPase activity" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
TAIR|locus:2090517 AGD15 "AT3G17660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060920-2 smap1 "stromal membrane-associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00012359 W09D10.1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
CGD|CAL0003973 orf19.1396 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F413 SMAP2 "Stromal membrane-associated protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0033349 CG8243 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WU79 SMAP2 "Stromal membrane-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A1EAA2 SMAP1 "SMAP1 protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FL69AGD5_ARATHNo assigned EC number0.55530.89150.9358yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027600001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (478 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 7e-62
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 3e-49
COG5347319 COG5347, COG5347, GTPase-activating protein that r 2e-36
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 6e-17
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 2e-12
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 2e-12
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information 
 Score =  197 bits (504), Expect = 7e-62
 Identities = 67/116 (57%), Positives = 84/116 (72%), Gaps = 6/116 (5%)

Query: 8   QILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 67
           ++L  L KLP N+ CADC A  P WAS+NLGIFIC++CSG+HRSLGVHISKVRS TLD W
Sbjct: 2   RLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDKW 61

Query: 68  LPEQVAFIQSMGNEKANSYWEAELPPNY------DRVGIENFIRAKYEEKRWVSRD 117
            PEQ+ F+++ GN++AN +WEA LPP        DR   E+FIRAKY EK +   +
Sbjct: 62  TPEQLEFMKAGGNKRANEFWEANLPPPKPPPSSSDREKRESFIRAKYVEKLFAEAE 117

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 507
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 100.0
PLN03131 705 hypothetical protein; Provisional 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.98
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.96
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.95
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.93
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.92
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.87
KOG0702524 consensus Predicted GTPase-activating protein [Sig 99.78
KOG0818 669 consensus GTPase-activating proteins of the GIT fa 99.76
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.71
KOG0521785 consensus Putative GTPase activating proteins (GAP 94.05
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-45  Score=363.12  Aligned_cols=272  Identities=35%  Similarity=0.495  Sum_probs=189.1

Q ss_pred             ChHHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchh
Q 010564            2 NFYVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNE   81 (507)
Q Consensus         2 ~~~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~   81 (507)
                      ..+.++++|++||+.|+|+.|||||+++|+|||+|+|||||++|+||||+||+|||+||||+||.|++|+|+.|+..||.
T Consensus         8 ~~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~GN~   87 (287)
T KOG0703|consen    8 SNERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISMGNA   87 (287)
T ss_pred             ccchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHHcch
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCChh----hHHHHHHHHhhhcccccCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCcchhHhh
Q 010564           82 KANSYWEAELPPNYDRV----GIENFIRAKYEEKRWVSRDGQANSPPRGLEEKASIHWQRPGEKSGHGYTDNSENLSEER  157 (507)
Q Consensus        82 raN~iwEa~lPps~d~~----~re~FIraKY~eKrF~~~~g~~~~Ps~~~~ek~~~~~qr~~~~sg~~~~~s~~~~f~er  157 (507)
                      ++|.|||++||..++++    .+|+|||+|||.|+|+.++..-....+..++...    |...+..+.....+...+ ..
T Consensus        88 ~an~~~ea~~p~~~~~p~~d~~~e~FIR~KYE~kkf~~~~~~~~s~~~~~~~~~k----~~~~~~~~~~~s~s~~~~-~~  162 (287)
T KOG0703|consen   88 KANSYYEAKLPDPFRRPGPDDLVEQFIRDKYERKKFLDPEEDITSKPGSRDEESK----RSDKRSRKLSSSLSRSFV-KS  162 (287)
T ss_pred             hhhhhccccCCccccCCChHHHHHHHHHHHHhhhhhccchhhcccCCCccccccc----ccccCccccccchhhhhh-hh
Confidence            99999999999887654    4999999999999999986221222222222211    121222222222222222 21


Q ss_pred             hcCCCCCCCCCCCccccccCCCCCCCCCcccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCC
Q 010564          158 KHVQAPSTKDSVPAARISLPLPPRGPDQVVAITKPQQTESTVAPAGATNQSSDANLAVPPPKVDFASDLFDMLSGDSPNE  237 (507)
Q Consensus       158 ~~~~~~~~k~~~patr~~~p~~~~~p~~v~p~pkpq~~eP~~~~~~~~~~~~~~~~~a~pPKvd~AtDLFdmLsmD~~te  237 (507)
                      .+       ...-+.+.  +...                    +.......++..+.......++. +|.+.|.+++   
T Consensus       163 ~r-------~~~~~~~~--~~~s--------------------~~~~~~~~~~~~~~~i~~~~~~~-~~~s~~n~~~---  209 (287)
T KOG0703|consen  163 AR-------EDQLKYFL--PKTS--------------------QPVDDLATFQGPIASPHNLQTTY-SLNSTLNIFG---  209 (287)
T ss_pred             cc-------cccccccc--ccCC--------------------CCchhhhhccCccccccchheee-cccccccccc---
Confidence            11       11111111  1110                    11111222222234456666777 8888888777   


Q ss_pred             CCccc----ccCCCccccccccccccCcccccCCCCcccCCCCCcccccccccCCCCCCCCCCCCCCchhhhhhHHhhhc
Q 010564          238 NSSEA----ASADDNLWAGFQSAVETSTAEKKDSTKAVESSPQSATGIEDLFKDSPSLATPSSSEKPQKDLKNDIMSLFE  313 (507)
Q Consensus       238 n~sea----ss~dDn~waGFqsA~~~sta~k~~~~~a~eS~~qStsgiEDlFkdsp~~~~~~~~~~~qk~~KndImsLfe  313 (507)
                      +..++    + +.+..|+.|+.+...-+ +...+..+..+....-...+ ++++.+....    .      . .|++|| 
T Consensus       210 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~f~~~~-~~~~~~~~~~----~------~-~~~~~~-  274 (287)
T KOG0703|consen  210 SGKEAADSFT-LRAARFAPLAVAFSTVT-EDLVPFLQRNSLSEGFMEKT-LSKPKRWFGT----Q------Q-SKSSLF-  274 (287)
T ss_pred             CccccCCCcc-cccccccccccccccCc-cccccccccccccccccCcc-cccccccccc----C------c-cccccc-
Confidence            22222    3 78888888887766655 76777777777666666666 7777333322    1      5 899999 


Q ss_pred             cCcccCcchhhHH
Q 010564          314 KSNMVSPFAMHQQ  326 (507)
Q Consensus       314 ksn~~spf~~~qq  326 (507)
                      +-..+.||..++|
T Consensus       275 ~~~~~~~~~~~~~  287 (287)
T KOG0703|consen  275 FLDGNVPFGSKES  287 (287)
T ss_pred             cccccccccccCC
Confidence            9999999988764

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 3e-32
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 6e-28
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 2e-24
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 2e-24
3t9k_A390 Crystal Structure Of Acap1 C-portion Mutant S554d F 2e-24
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 8e-21
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 9e-21
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 8e-19
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 1e-18
3lvq_E497 The Crystal Structure Of Asap3 In Complex With Arf6 2e-18
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 3e-18
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 1e-16
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 8e-16
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-15
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 2e-15
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 5e-15
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 7e-15
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 2e-14
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure 
Iteration: 1

 Score =  136 bits (342), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 4/121 (3%)
Query: 6   FMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 65
           +  +L  LL   +N+ CADC++KGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD
Sbjct: 14  YQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD 73
Query: 66  TWLPEQVAFIQSMGNEKANSYWEAELPPNYDR----VGIENFIRAKYEEKRWVSRDGQAN 121
            W  EQ+  +Q MGN KAN  +EA LP  + R      +E FIR KYE+K+++ R    N
Sbjct: 74  QWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDIN 133
Query: 122 S 122
           +
Sbjct: 134 A 134
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 3e-63
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-61
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 1e-61
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 4e-59
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 5e-58
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 1e-57
2owa_A138 Arfgap-like finger domain containing protein; zinc 1e-55
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 5e-55
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 1e-50
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 5e-50
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-46
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 2e-46
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 7e-43
3o47_A329 ADP-ribosylation factor GTPase-activating protein 3e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
 Score =  201 bits (513), Expect = 3e-63
 Identities = 62/122 (50%), Positives = 84/122 (68%), Gaps = 4/122 (3%)

Query: 8   QILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 67
            IL  LL+  +N+ CADC+AKGPRWAS N+G+FIC++C+GIHR+LGVHIS+V+S  LD W
Sbjct: 18  LILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQW 77

Query: 68  LPEQVAFIQSMGNEKANSYWEAELPPNY----DRVGIENFIRAKYEEKRWVSRDGQANSP 123
             EQ+  +Q MGN KA   +EA LP N+        +E FIR KYE+K++  ++  A S 
Sbjct: 78  TAEQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAISG 137

Query: 124 PR 125
           P 
Sbjct: 138 PS 139
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 99.98
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 99.98
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 99.97
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 99.96
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 99.96
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.96
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 99.96
3o47_A329 ADP-ribosylation factor GTPase-activating protein 99.95
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 84.51
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.7e-40  Score=294.50  Aligned_cols=115  Identities=50%  Similarity=0.963  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHH
Q 010564            4 YVFMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA   83 (507)
Q Consensus         4 ~k~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~ra   83 (507)
                      ++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||+|++++|++|+.+||.++
T Consensus        12 e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~a   91 (134)
T 2iqj_A           12 DRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKA   91 (134)
T ss_dssp             -CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCC----hhhHHHHHHHHhhhcccccCCC
Q 010564           84 NSYWEAELPPNYD----RVGIENFIRAKYEEKRWVSRDG  118 (507)
Q Consensus        84 N~iwEa~lPps~d----~~~re~FIraKY~eKrF~~~~g  118 (507)
                      |.|||+++|+.+.    ...+|+|||+||++++|+.+..
T Consensus        92 n~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~  130 (134)
T 2iqj_A           92 NRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL  130 (134)
T ss_dssp             HHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred             HHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence            9999999986542    3468999999999999997644
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 507
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 3e-50
d1ea9c1121 b.1.18.2 (C:1-121) Maltogenic amylase, N-terminal 0.002
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  165 bits (420), Expect = 3e-50
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 8/118 (6%)

Query: 8   QILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTW 67
           +I+  + ++  N  C DC A  P W S NLGI  C++CSGIHR LGVH S+++S TLD  
Sbjct: 4   EIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVL 63

Query: 68  LPEQVAFIQSMGNEKANSYWEAELP--------PNYDRVGIENFIRAKYEEKRWVSRD 117
              ++   +++GN   N   E  LP        P  D +  +++I AKY E+R+  + 
Sbjct: 64  GTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 121

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 87.33
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-39  Score=285.73  Aligned_cols=112  Identities=38%  Similarity=0.726  Sum_probs=104.7

Q ss_pred             HHHHHHHHhcCCCCCCcccCCCCCCCceecchhHHHhHHhhhhhhcCCCccceeeeccCCCCCHHHHHHHHhhchhHHHH
Q 010564            6 FMQILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANS   85 (507)
Q Consensus         6 ~ekiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSGIHRsLG~hISkVKSLsLD~Wt~eEV~~Mq~gGN~raN~   85 (507)
                      ++++|+.|++.|+|++|||||+.+|+|||+|||||||++|+|+||.||+|||+|||++||+|++++|++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHHHhHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCC--------CChhhHHHHHHHHhhhcccccCC
Q 010564           86 YWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD  117 (507)
Q Consensus        86 iwEa~lPps--------~d~~~re~FIraKY~eKrF~~~~  117 (507)
                      +||+++|..        .+...+++||++||++|+|+.+.
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccccc
Confidence            999988632        23457899999999999999763
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure