Citrus Sinensis ID: 010571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
Protein Sequence
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Secondary Structure (PSIPRED)
ccccEEEEEcccccEEEEcccccccccccccEEEEEccEEEEEcccccccccccEEEEEcccccEEEEEEcccccccccccccccccccccccEEEEEEccEEEEEEcccccccccEEEEEEEcccccEEEEcccccccccccccEEEEEccEEEEEccccccccccccEEEEEcccccEEEEEccccccccccccEEEEEccEEEEEEcccccccccccEEEEEcccccEEcccccccccccccccEEEEEccEEEEEEccccccccccEEEEEccccEEEEEcccccccccccccccEEEEEEEcccEEEEEccccccccccEEEEEccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccEEEEccccccccccccccEEEEEccEEEEEEcccccccccEEEEEcccccEEEEEccccccccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEcccccEEEEccccccccccccccEEEEEccEEEEEEcccccccccccEEEEcccccEEEEccccccccccccccEEEEEcccEEEEEEccccccccccEEEEcccccEEEcccccccccccccccEEEEEccEEEEEEccccccccccEEEEcccccEEEEEcccccccccccccccEEEEEEEEccEEEEEEccccccccEEEEEcccccccccccccccccccccccEEEHHHccccccccccccccHHcccccccccccccccccHHHHccccHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEEccc
Coil and Loop (DISEMBL)
mdsgswhlelpydlwvtlpvsgarpsprykhaaaVFDQklyivggsrngrflsdvqVFDLRSLAWSNLRLEteldadktedsgllevlppmsdhcmvkWGTKLLILgghykkssdSMIVRFIDLETNlcgvmetsgkvpvargghsvTLVGSRLIifggedrsrkllndvhfldletmtwdavevtqtppaprydhsaalHANRYLIVFGgcshsiffndlhvldlqtnewsqpeikgdlvtgraghagitidenwyivgggdnnngcQETIVLNMTKLAWSILTSvkgrnplaseglSVCSAIIEGEHHLVAfggyngkynnEVFVMrlkprdiprpkifqspAAAAAAASVTAAYALAKsekldipktlsskfagigndlsekdvrTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Flexible Loop (DISEMBL)
mdsgswhlELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLeteldadktedSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGkvpvargghsvtlVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKsekldipktlsskfagigndlsekdvrtdidaikedkrvlelsltevrtensrfrekideVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAtsvqtqgsggvWRWIAGGQ
Low Complexity Region (SEG)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPaaaaaaasvtaayalaKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ
Disordered region (IsUnstruct)
*****WHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDA*****SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKS**LDI*******FAGI*******************************************************************RCFKLEAQI*******************************************GVWRWI****
Disordered Region (DISOPRED)
MDSGSWHLELPYDLWVTLPV**ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS*****PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK*****************YALAKSE***********************V*****************************************************************************************************************RWIAGG*
Disordered Region (DISEMBL)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQ************AAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDE*******************VAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS****************SGGVWRWIAGGQ
Disordered Region (DISPRO)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETEL*********LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGI**********TDIDA***DK*VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS******GGVW*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTExxxxxxxxxxxxxxxxxxxxxLSSVQGQLVAERSRCFKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTQGSGGVWRWIAGGQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	507	2.2.26 [Sep-21-2011]
Q9MA55	668	Acyl-CoA-binding domain-c	no	no	0.960	0.729	0.461	1e-128
Q8RWD9	648	Acyl-CoA-binding domain-c	no	no	0.934	0.731	0.447	1e-120
Q7M3S9	943	RING finger protein B OS=	no	no	0.465	0.250	0.309	1e-25
Q5EA50	372	Rab9 effector protein wit	yes	no	0.508	0.693	0.262	7e-23
Q4V8F4	372	Rab9 effector protein wit	yes	no	0.504	0.688	0.282	1e-21
Q8VCH5	380	Rab9 effector protein wit	yes	no	0.504	0.673	0.278	2e-21
Q7Z6M1	372	Rab9 effector protein wit	yes	no	0.453	0.618	0.288	4e-21
Q9BQ90	382	Kelch domain-containing p	no	no	0.546	0.725	0.286	1e-19
Q8VEM9	382	Kelch domain-containing p	no	no	0.546	0.725	0.286	5e-19
Q6AYI2	382	Kelch domain-containing p	no	no	0.546	0.725	0.286	6e-19

>sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/498 (46%), Positives = 332/498 (66%), Gaps = 11/498 (2%)

Query: 12  YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 71
           Y+ W     SG RP  RY+H AAV   K+YI GG+ NGR+L D+ V DL+S  WS  R+E
Sbjct: 168 YNQWTAPQTSGQRPKARYEHGAAVIQDKMYIYGGNHNGRYLGDLHVLDLKSWTWS--RVE 225

Query: 72  TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131
           T++ A +++++    +L P + H ++ W  KLL +GGH K  S+SM V+  D  T    +
Sbjct: 226 TKV-ATESQETSTPTLLAPCAGHSLIAWDNKLLSIGGHTKDPSESMQVKVFDPHTITWSM 284

Query: 132 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 191
           ++T GK PV+RGG SVT+VG  L+IFGG+D  R LLND+H LDL+TMTWD ++     P+
Sbjct: 285 LKTYGKPPVSRGGQSVTMVGKTLVIFGGQDAKRSLLNDLHILDLDTMTWDEIDAVGVSPS 344

Query: 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
           PR DH+AA+HA R+L++FGG SH+  F+DLHVLDLQT EWS+P  +GD  T RAGHAG+T
Sbjct: 345 PRSDHAAAVHAERFLLIFGGGSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRAGHAGVT 404

Query: 252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311
           I ENW+IVGGGDN +G  E++VLNM+ LAWS++ SV+GR PLASEGLS+  +   GE  L
Sbjct: 405 IGENWFIVGGGDNKSGASESVVLNMSTLAWSVVASVQGRVPLASEGLSLVVSSYNGEDVL 464

Query: 312 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTL 371
           VAFGGYNG+YNNE+ +++   +   + K  ++P   + +A   A     +SE +++ +  
Sbjct: 465 VAFGGYNGRYNNEINLLKPSHKSTLQTKTLEAPLPGSLSAVNNATTRDIESE-VEVSQEG 523

Query: 372 SSKFAGIGN----DLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS 427
             +   + N       E +    I  IK +K  LE SL + R +  + R+++ E    ++
Sbjct: 524 RVREIVMDNVNPGSKVEGNSERIIATIKSEKEELEASLNKERMQTLQLRQELGEAELRNT 583

Query: 428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 487
           +L KEL SV+GQL AE+SRCFKLE  +AEL++ L++ +T++ E+++L++QK+A EQ    
Sbjct: 584 DLYKELQSVRGQLAAEQSRCFKLEVDVAELRQKLQTLETLQKELELLQRQKAASEQA--- 640

Query: 488 ATSVQTQGSGGVWRWIAG 505
           A + + QGSGGVW W+AG
Sbjct: 641 AMNAKRQGSGGVWGWLAG 658

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1

 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/494 (44%), Positives = 318/494 (64%), Gaps = 20/494 (4%)

Query: 12  YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 71
           Y+ W     SG  P  RY+H AAV   K+Y+ GG+ NGR+L D+ V DL++  WS  R+E
Sbjct: 169 YNQWTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWS--RVE 226

Query: 72  TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131
           T++     E S   + L   + H ++ W  +LL +GGH K  S+SM V   DL      +
Sbjct: 227 TKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSI 285

Query: 132 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 191
           ++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H LDL+TMTW+ ++   +PP 
Sbjct: 286 LKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPT 345

Query: 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
           PR DH+AA+HA RYL++FGG SH+  F+DLHVLDLQT EWS+   +GD  T RAGHAG+T
Sbjct: 346 PRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVT 405

Query: 252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311
           I ENWYIVGGGDN +G  +T+VLNM+ LAWS++TSV+   PLASEGLS+  +   GE  +
Sbjct: 406 IGENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIV 465

Query: 312 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKLDIPKTL 371
           VAFGGYNG YNNEV V++   +   + KI  + A   + ++V  A         DI   +
Sbjct: 466 VAFGGYNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDSFSAVNNATT------RDIESEI 519

Query: 372 SSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 431
             K  G  + +        I  +K +K  +E SL + + +  + +E++ E+++ ++EL K
Sbjct: 520 --KVEGKADRI--------ITTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTRNTELYK 569

Query: 432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSV 491
           EL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E+++L++Q+ A   E     + 
Sbjct: 570 ELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELELLQRQR-AVASEQAATMNA 628

Query: 492 QTQGSGGVWRWIAG 505
           + Q SGGVW W+AG
Sbjct: 629 KRQSSGGVWGWLAG 642

Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 121/271 (44%), Gaps = 35/271 (12%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQK---------LYIVGGSRNGRFLSDVQVFDL---RS 62
           W  +   G  PS RY H+A ++  +         +   GG    +  SD+ +  +   RS
Sbjct: 55  WSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRS 114

Query: 63  LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRF 121
             W  +  ++               +   + H  V +   L++ GGH   KS     V  
Sbjct: 115 FIWKQVTTKS---------------IEGRAGHTAVVYRQNLVVFGGHNNHKSKYYNSVLL 159

Query: 122 IDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTW 180
             LE+N        G +P AR  HS   V + ++ IFGG D  +K  ND+++LDLET  W
Sbjct: 160 FSLESNEWRQQVCGGVIPSARATHSTFQVNNNKMFIFGGYD-GKKYYNDIYYLDLETWIW 218

Query: 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQ-TNE--WSQPEI 236
             VE   TPP PR  HSA +  N  L++FGGC S S F ND+H+L ++  NE  W QP  
Sbjct: 219 KKVEAKGTPPKPRSGHSATMIQNNKLMIFGGCGSDSNFLNDIHILHIEGANEYRWEQPSY 278

Query: 237 KG-DLVTGRAGHAGITIDENWYIVGGGDNNN 266
            G ++   R  H    I    YI  G  + N
Sbjct: 279 LGLEIPQARFRHTTNFIGGRVYIYAGTGSGN 309

Dictyostelium discoideum (taxid: 44689)

>sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1

 Score =  108 bits (271), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 24/282 (8%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAW 65
           + W TL + G  P  R  H+ +           K++IVGG+   R  SDV   DL +  W
Sbjct: 16  ETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDVHTIDLGTHQW 75

Query: 66  SNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 125
                E  L   + E +  +    P S          + + GG   +S +   ++ ++ +
Sbjct: 76  DLATSEGLLP--RYEHTSFIPSCTPHS----------IWVFGG-ADQSGNRNCLQVLNPD 122

Query: 126 TNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDA 182
           T      E +G  P  R  H S   +G +L +FGG +R  + + DV  H  D  T+TW  
Sbjct: 123 TRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQ 182

Query: 183 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 242
            E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   T
Sbjct: 183 PETHGKPPSPRHGH-VMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPT 241

Query: 243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
           G A H+ + + ++ Y+ GG             ++ K  W++L
Sbjct: 242 GCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHWTLL 283

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Bos taurus (taxid: 9913)

>sp|Q4V8F4|RABEK_RAT Rab9 effector protein with kelch motifs OS=Rattus norvegicus GN=Rabepk PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 121/280 (43%), Gaps = 24/280 (8%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
           W TL   G +P PR  H+ + F         K++IVGG+   +  SDV   DL +  W  
Sbjct: 18  WYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDLGTHRWDT 77

Query: 68  LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
              E  L   + E +  L    P S          + + GG   +S +   ++ ++ E  
Sbjct: 78  ATREGLLP--RYEHASFLPSCSPHS----------IWVFGG-ADQSGNRNCLQVMNPEAR 124

Query: 128 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                E +G  P  R  H S   +G+ L +FGG +R  + + DV  H  D  T+TW   E
Sbjct: 125 TWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDANTLTWAQPE 184

Query: 185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
              +PP+PR+ H A + A   L + GG +   FF+DLH +D+    W +    G    G 
Sbjct: 185 THGSPPSPRHGH-AMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGC 243

Query: 245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
           A HA + +  + Y+ GG             +  K  W+IL
Sbjct: 244 AAHAAVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTIL 283

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Rattus norvegicus (taxid: 10116)

>sp|Q8VCH5|RABEK_MOUSE Rab9 effector protein with kelch motifs OS=Mus musculus GN=Rabepk PE=2 SV=2

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 121/280 (43%), Gaps = 24/280 (8%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
           W TL   G RP PR  H+ + F         K++IVGG+   +  SDV   DL +  W  
Sbjct: 26  WYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTHQWDT 85

Query: 68  LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
              E  L   + E +  L    P S          + + GG   +S +   ++ +  E  
Sbjct: 86  ATREGLLP--RYEHASFLPSCSPHS----------IWVFGG-ADQSGNRNCLQVMSPEDR 132

Query: 128 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                E +G  P  R  H S   +G++L +FGG +R  + + DV  H  D  T+TW   E
Sbjct: 133 TWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPE 192

Query: 185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
              +PP+PR+ H   + A   L + GG +   FF+DLH +D+    W +    G +  G 
Sbjct: 193 THGSPPSPRHGH-VMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGC 251

Query: 245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
           A HA + +  + Y+ GG             +  K  W++L
Sbjct: 252 AAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHWTVL 291

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Mus musculus (taxid: 10090)

>sp|Q7Z6M1|RABEK_HUMAN Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1

 Score =  103 bits (256), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/260 (28%), Positives = 118/260 (45%), Gaps = 30/260 (11%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
           W TL V G  P  R  H+ +           K++IVGG+   R  SDV   DL    W  
Sbjct: 18  WYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDLGKHQW-- 75

Query: 68  LRLETELDADKTEDSGLLEVLPPMSDHC-MVKWGT--KLLILGGHYKKSSDSMIVRFIDL 124
                +LD  K    GLL    P  +H   +   T  ++ + GG   +S +   ++ ++ 
Sbjct: 76  -----DLDTCK----GLL----PRYEHASFIPSCTPDRIWVFGG-ANQSGNRNCLQVLNP 121

Query: 125 ETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLND--VHFLDLETMTWD 181
           ET      E +   P  R  H S   +G++L +FGG +R  + + D  +H  D  T+TW 
Sbjct: 122 ETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWS 181

Query: 182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV 241
             E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   
Sbjct: 182 QPETLGNPPSPRHGH-VMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAP 240

Query: 242 TGRAGHAGITIDENWYIVGG 261
            G A H+ + + ++ YI GG
Sbjct: 241 AGCAAHSAVAMGKHVYIFGG 260

Rab9 effector required for endosome to trans-Golgi network (TGN) transport.

Homo sapiens (taxid: 9606)

>sp|Q9BQ90|KLDC3_HUMAN Kelch domain-containing protein 3 OS=Homo sapiens GN=KLHDC3 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 127/307 (41%), Gaps = 30/307 (9%)

Query: 28  RYKHAAAVFDQKLYIVGGSRNGRFLS-----DVQVFDLRSLAWSNLRLETELDADKTEDS 82
           R  HAA     ++Y  GG  +G         DV +F+  SL W      T+L   K+   
Sbjct: 14  RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVKSAIR 67

Query: 83  GLLEVLPPMS-DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA 141
           G   V+P M   H  V     +L+ GG         ++   D+ T+       SG VP A
Sbjct: 68  GQAPVVPYMRYGHSTVLIDDTVLLWGGRNDTEGACNVLYAFDVNTHKWFTPRVSGTVPGA 127

Query: 142 RGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL 200
           R GHS  ++G  + IFGG E ++    ND+H LD  TMTW  +    +P   R  HSA +
Sbjct: 128 RDGHSACVLGKIMYIFGGYEQQADCFSNDIHKLDTSTMTWTLICTKGSPARWRDFHSATM 187

Query: 201 HANRYLIVFGG---------CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
             + ++ VFGG          ++ I+ N + V D +T  W        L  GR  H+   
Sbjct: 188 LGS-HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFG 246

Query: 252 IDENWYIVGGGDN--NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 309
            +   YI GG +   N    +    N     W  +   KG+ P        C   I G+ 
Sbjct: 247 YNGELYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEP-KGKGPCPRRRQCCC---IVGD- 301

Query: 310 HLVAFGG 316
            +V FGG
Sbjct: 302 KIVLFGG 308

May be involved in meiotic recombination process.

Homo sapiens (taxid: 9606)

>sp|Q8VEM9|KLDC3_MOUSE Kelch domain-containing protein 3 OS=Mus musculus GN=Klhdc3 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 123/307 (40%), Gaps = 30/307 (9%)

Query: 28  RYKHAAAVFDQKLYIVGGSRNGRFLS-----DVQVFDLRSLAWSNLRLETELDADKTEDS 82
           R  HAA     ++Y  GG  +G         DV +F+  SL W      T+L   +    
Sbjct: 14  RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVRPAVR 67

Query: 83  GLLEVLPPMS-DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA 141
           G   V+P M   H  V     + + GG         ++   D+ T+       SG VP A
Sbjct: 68  GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGA 127

Query: 142 RGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL 200
           R GHS  ++G  + IFGG E  +    ND+H LD  TMTW  V     P   R  HSA +
Sbjct: 128 RDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRDFHSATM 187

Query: 201 HANRYLIVFGG---------CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
             N ++ VFGG          ++ I+ N + V D +T  W        L  GR  H+   
Sbjct: 188 LGN-HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRRSHSAFG 246

Query: 252 IDENWYIVGGGDN--NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 309
            +   YI GG +   N    +    N     W  +   KG+ P        C   I G+ 
Sbjct: 247 YNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEP-KGKGPCPRRRQCCC---IVGD- 301

Query: 310 HLVAFGG 316
            +V FGG
Sbjct: 302 KIVLFGG 308

May be involved in meiotic recombination process.

Mus musculus (taxid: 10090)

>sp|Q6AYI2|KLDC3_RAT Kelch domain-containing protein 3 OS=Rattus norvegicus GN=Klhdc3 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 123/307 (40%), Gaps = 30/307 (9%)

Query: 28  RYKHAAAVFDQKLYIVGGSRNGRFLS-----DVQVFDLRSLAWSNLRLETELDADKTEDS 82
           R  HAA     ++Y  GG  +G         DV +F+  SL W      T+L   +    
Sbjct: 14  RVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRW------TKLPPVRPAVR 67

Query: 83  GLLEVLPPMS-DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA 141
           G   V+P M   H  V     + + GG         ++   D+ T+       SG VP A
Sbjct: 68  GQAPVVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVSGTVPGA 127

Query: 142 RGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL 200
           R GHS  ++G  + IFGG E  +    ND+H LD  TMTW  V     P   R  HSA +
Sbjct: 128 RDGHSACVLGKIMYIFGGYEQLADCFSNDIHKLDTSTMTWTLVCTKGNPARWRDFHSATM 187

Query: 201 HANRYLIVFGG---------CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
             N ++ VFGG          ++ I+ N + V D +T  W        L  GR  H+   
Sbjct: 188 LGN-HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPHTPVLPEGRRSHSAFG 246

Query: 252 IDENWYIVGGGDN--NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 309
            +   YI GG +   N    +    N     W  +   KG+ P        C   I G+ 
Sbjct: 247 YNGELYIFGGYNARLNRHFHDLWKFNPGSFTWKKIEP-KGKGPCPRRRQCCC---IVGD- 301

Query: 310 HLVAFGG 316
            +V FGG
Sbjct: 302 KIVLFGG 308

May be involved in meiotic recombination process.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
224113141	512	predicted protein [Populus trichocarpa]	0.992	0.982	0.744	0.0
225448900	508	PREDICTED: acyl-CoA-binding domain-conta	0.994	0.992	0.726	0.0
449465316	509	PREDICTED: acyl-CoA-binding domain-conta	0.988	0.984	0.675	0.0
255583742	512	acyl-CoA binding protein, putative [Rici	0.877	0.869	0.760	0.0
15237715	514	kelch repeat-containing protein [Arabido	0.982	0.968	0.668	0.0
15724206	514	AT5g04420/T32M21_20 [Arabidopsis thalian	0.982	0.968	0.666	0.0
297810527	514	kelch repeat-containing protein [Arabido	0.982	0.968	0.668	0.0
356576361	504	PREDICTED: acyl-CoA-binding domain-conta	0.988	0.994	0.642	0.0
115449833	519	Os02g0822800 [Oryza sativa Japonica Grou	0.970	0.947	0.533	1e-144
357137701	523	PREDICTED: acyl-CoA-binding domain-conta	0.966	0.936	0.528	1e-139

>gi|224113141|ref|XP_002316404.1| predicted protein [Populus trichocarpa] gi|222865444|gb|EEF02575.1| predicted protein [Populus trichocarpa]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/505 (74%), Positives = 429/505 (84%), Gaps = 2/505 (0%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           M+  +W  +LPY+ WV +PVSG RPS RYKHAA V D+KLYI GGSR GR+L DVQVFD 
Sbjct: 10  MEVANWFSQLPYEQWVPIPVSGTRPSARYKHAAGVADEKLYIAGGSRTGRYLPDVQVFDF 69

Query: 61  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 120
           R L WS+L+L++E D  K+E++G  EVLP  SDH MVKWG KLL+LGGH K +SDSM VR
Sbjct: 70  RGLVWSSLKLKSEADGGKSEENGAQEVLPATSDHSMVKWGNKLLLLGGHSKTTSDSMTVR 129

Query: 121 FIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
           FIDLET+ CG +ETSG  PVARGGHSVTLVGSRLIIFGGEDR+R+LLNDV+ LDLETMTW
Sbjct: 130 FIDLETHACGFIETSGNAPVARGGHSVTLVGSRLIIFGGEDRNRRLLNDVYALDLETMTW 189

Query: 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
           D V   QTPPAPR+DH+AA++   YL++FGGCSHSIFFNDLHVLDLQT EWSQPE++GDL
Sbjct: 190 DVVVARQTPPAPRFDHTAAINREHYLLIFGGCSHSIFFNDLHVLDLQTMEWSQPEVQGDL 249

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 300
           VT RAGHAG+TI ENWYIVGGGDN NGC ET+VLNM+KL WS LTSVK R+PLASEGLSV
Sbjct: 250 VTPRAGHAGVTIGENWYIVGGGDNKNGCPETLVLNMSKLTWSALTSVKERDPLASEGLSV 309

Query: 301 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 360
           CSA+I GE HLVAFGGYNGKYNNEVFVMRLKP D+ RPKIFQSPAAAAAAASVTAAYALA
Sbjct: 310 CSALINGERHLVAFGGYNGKYNNEVFVMRLKPSDVSRPKIFQSPAAAAAAASVTAAYALA 369

Query: 361 KSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKID 420
           KSEKLD   +L+    G+GN+ SE D+  +IDA+KE+K+ LEL LTEVR ENSR  EK+D
Sbjct: 370 KSEKLDF-SSLNLNSNGVGNNPSELDLAFEIDALKEEKKELELFLTEVRAENSRLTEKVD 428

Query: 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 480
           EVN TH+ELSKEL SVQGQL AERSRCFKLEAQIAELQK+LES Q+IENEVQ+LR+QKSA
Sbjct: 429 EVNGTHAELSKELHSVQGQLAAERSRCFKLEAQIAELQKILESLQSIENEVQLLRRQKSA 488

Query: 481 FEQEMERATSVQTQGSGGVWRWIAG 505
            EQE+ER ++ Q QGSGGVWRWIAG
Sbjct: 489 LEQEIER-SAAQRQGSGGVWRWIAG 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448900|ref|XP_002264719.1| PREDICTED: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] gi|296085942|emb|CBI31383.3| unnamed protein product [Vitis vinifera]

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/505 (72%), Positives = 422/505 (83%), Gaps = 1/505 (0%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           MD  +WH EL YD W+ LPVSG RPS RYKHAAAV D+KLYI GGSRNGR+LSDVQVFDL
Sbjct: 1   MDIDNWHSELEYDQWLRLPVSGPRPSARYKHAAAVVDEKLYISGGSRNGRYLSDVQVFDL 60

Query: 61  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 120
           RSLAWS L+L+ E +ADK E++ L EV P  S H M+KWG KLLILGGH K SSD + VR
Sbjct: 61  RSLAWSALKLKMESNADKVEENNLQEVFPATSGHNMIKWGNKLLILGGHSKNSSDGVTVR 120

Query: 121 FIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
            IDLET  CGV++TSGKVPVARGG SVTLVGSRLI+FGGEDRSR LLNDVH LDL+TMTW
Sbjct: 121 AIDLETQQCGVIKTSGKVPVARGGQSVTLVGSRLIMFGGEDRSRHLLNDVHVLDLDTMTW 180

Query: 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
           D VE TQTPPAPR+DH+AA+HA RYL++FGGCSHSIFFNDLH+LDLQT EWSQP+I+GDL
Sbjct: 181 DVVEATQTPPAPRFDHTAAVHAERYLLIFGGCSHSIFFNDLHILDLQTMEWSQPQIQGDL 240

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 300
           VT RAGHAG TIDENWYIVGGGDN +G  ET+V NM+KL WS+LT VK R+PLASEGL+V
Sbjct: 241 VTPRAGHAGTTIDENWYIVGGGDNRSGTPETLVFNMSKLGWSVLTRVKERDPLASEGLNV 300

Query: 301 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 360
           CSA + GE HLV FGGYNGKYNNEVF+M+ KP D  RPKIFQSPAAAAAAASVTAAYALA
Sbjct: 301 CSASVNGEKHLVTFGGYNGKYNNEVFIMKPKPTDSTRPKIFQSPAAAAAAASVTAAYALA 360

Query: 361 KSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKID 420
           KSEKLD  +T  S F G+  + S +D   +I+AI+E+ +VLE S+ EV+ ENSR +EKID
Sbjct: 361 KSEKLDFIETEDSNFGGVKENNSAQDFSIEINAIREENKVLESSVAEVKAENSRLKEKID 420

Query: 421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSA 480
           ++N T++ELSKEL SVQGQLV ERSRC KLEAQIAELQKMLE+ Q+IE+EVQ+LR+QKS 
Sbjct: 421 DINGTYAELSKELHSVQGQLVVERSRCSKLEAQIAELQKMLETLQSIEDEVQLLRRQKSM 480

Query: 481 FEQEMERATSVQTQGSGGVWRWIAG 505
            E+ ME A + Q QGSGGVWRWIAG
Sbjct: 481 LERNMEVA-AAQRQGSGGVWRWIAG 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465316|ref|XP_004150374.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus] gi|449523517|ref|XP_004168770.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/511 (67%), Positives = 413/511 (80%), Gaps = 10/511 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           MD  SW   L +D WV LPVSG+RP  RYKHAAAV DQKLYIVGGSRNGR+LSDVQV DL
Sbjct: 1   MDVDSWQWGLAFDQWVALPVSGSRPPARYKHAAAVVDQKLYIVGGSRNGRYLSDVQVLDL 60

Query: 61  RSLAWSNLRLETELDADKTEDSG-LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIV 119
            +L+WS+++L+     + ++ +G L+E LPP S H MVKW  KL++LGG+ K+SSD ++V
Sbjct: 61  SNLSWSSVKLQMNPGVENSDGNGSLVEALPPASGHSMVKWDKKLIVLGGNLKRSSDRILV 120

Query: 120 RFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 179
             IDLET+   VMET+G +PVAR GHS TL GS++++FGGED SRKLLND+H LDLE +T
Sbjct: 121 HCIDLETHTWSVMETTGNIPVARAGHSATLFGSKIMMFGGEDSSRKLLNDIHVLDLEALT 180

Query: 180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD 239
           WD VE  Q+PPAPR+DH+AALHA  YL+VFGGCSHS FF DLHVLD  T EWSQP+++GD
Sbjct: 181 WDEVETKQSPPAPRFDHTAALHAEHYLLVFGGCSHSAFFRDLHVLDFHTMEWSQPQLQGD 240

Query: 240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 299
           LVT RAGHAGITIDENWYIVGGGDN NGC ETIVLNM+KL+W  L SVK R PLASEG+S
Sbjct: 241 LVTPRAGHAGITIDENWYIVGGGDNKNGCPETIVLNMSKLSWLALRSVKQREPLASEGIS 300

Query: 300 VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYAL 359
           +  A I+ E +LVAFGGYNGKYNNEVFVMR KPRD  RPKIFQSPAAAAAAASVTAAYAL
Sbjct: 301 ISLATIDQEKYLVAFGGYNGKYNNEVFVMRPKPRDSSRPKIFQSPAAAAAAASVTAAYAL 360

Query: 360 AKSEKLDIPKTLSSKFAGIGN----DLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRF 415
           AK+EKLD      S   G+ N    + S+ +   ++ AI+E+K  LEL+L+EV++ENS+ 
Sbjct: 361 AKTEKLDF-----SMIEGVSNGRHQNHSQPNGAIELKAIREEKAKLELTLSEVQSENSKL 415

Query: 416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILR 475
           +++IDEVNSTH+ELSKEL SVQ QL+AERSRCFKLEAQIAELQKMLES Q+IENE+ +LR
Sbjct: 416 KQEIDEVNSTHAELSKELQSVQSQLIAERSRCFKLEAQIAELQKMLESMQSIENEIHLLR 475

Query: 476 QQKSAFEQEMERATSVQTQGSGGVWRWIAGG 506
           +QKSA E+ ME A++VQ QGSGGVWRWIAGG
Sbjct: 476 EQKSALEKHMEAASTVQRQGSGGVWRWIAGG 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583742|ref|XP_002532624.1| acyl-CoA binding protein, putative [Ricinus communis] gi|223527644|gb|EEF29755.1| acyl-CoA binding protein, putative [Ricinus communis]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/451 (76%), Positives = 390/451 (86%), Gaps = 6/451 (1%)

Query: 5   SWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA 64
           +W  +L Y+ WV +PVSG RPS RYKHAAA+ D+KLY+ GGSRNGR+LSDVQVFDLRS  
Sbjct: 14  NWFSQLTYEQWVAIPVSGVRPSARYKHAAAIADEKLYVSGGSRNGRYLSDVQVFDLRSSV 73

Query: 65  WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 124
           WS+L+L+T+L ADK E++GL EVLP  SDH MV+W  KLL+LGGH KKSSD   +RFIDL
Sbjct: 74  WSSLKLKTDLHADKVEENGLQEVLPATSDHSMVQWENKLLLLGGHSKKSSD---MRFIDL 130

Query: 125 ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 184
           ET+ CGVMETSGK PVARGGHS TLVGSRLI+FGGED SR+LLND++ LDLE MTWD +E
Sbjct: 131 ETHHCGVMETSGKAPVARGGHSATLVGSRLIVFGGEDGSRRLLNDLYALDLEKMTWDVLE 190

Query: 185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
            TQTPPAPR+DH+A +HA RYLIVFGGCSHSIFFNDLHVLDLQT EWSQPE +GDLVT R
Sbjct: 191 TTQTPPAPRFDHTATIHAERYLIVFGGCSHSIFFNDLHVLDLQTMEWSQPETRGDLVTPR 250

Query: 245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAI 304
           AGHAGI IDENWYIVGGGDN NGC ET+VLNM+KLAWS LT+VKGR+PLASEGLSVCS +
Sbjct: 251 AGHAGIAIDENWYIVGGGDNKNGCPETLVLNMSKLAWSTLTNVKGRDPLASEGLSVCSTL 310

Query: 305 IEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEK 364
           I+GE HLVAFGGYNGKYNNEVF+MRLKPRD+ RPKIFQSPAAAAAAASVTAAYALAKSEK
Sbjct: 311 IDGEKHLVAFGGYNGKYNNEVFIMRLKPRDMLRPKIFQSPAAAAAAASVTAAYALAKSEK 370

Query: 365 LDIPK-TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 423
           LD     L+S+   + +  SE+D+ ++IDAIKEDK+VLE+SL EVR ENSR REKIDEVN
Sbjct: 371 LDFSNINLNSR--EVESHPSEQDITSEIDAIKEDKKVLEMSLAEVRAENSRLREKIDEVN 428

Query: 424 STHSELSKELSSVQGQLVAERSRCFKLEAQI 454
           STH+ELSKEL SVQGQLVAERSRCFKLE  +
Sbjct: 429 STHAELSKELHSVQGQLVAERSRCFKLEKSL 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237715|ref|NP_196062.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|79326940|ref|NP_001031832.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|79326969|ref|NP_001031833.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|7406446|emb|CAB85548.1| putative protein [Arabidopsis thaliana] gi|53850551|gb|AAU95452.1| At5g04420 [Arabidopsis thaliana] gi|63003778|gb|AAY25418.1| At5g04420 [Arabidopsis thaliana] gi|222424058|dbj|BAH19990.1| AT5G04420 [Arabidopsis thaliana] gi|332003357|gb|AED90740.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|332003358|gb|AED90741.1| kelch repeat-containing protein [Arabidopsis thaliana] gi|332003359|gb|AED90742.1| kelch repeat-containing protein [Arabidopsis thaliana]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/504 (66%), Positives = 413/504 (81%), Gaps = 6/504 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           +D G WH  L +D W  LPVSG+R S RYKHAA V D+KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 61  RSLAWSNLRLETELD-ADKTED---SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116
           RSL WS+L+L+TE   AD  ++   S L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct: 68  RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query: 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176
           M+VRFIDLET+ CGV++  G VP +RGGHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct: 128 MLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query: 177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 296
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 356
           GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 357 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 416
           YA+AKS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query: 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 476
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 477 QKSAFEQEMERATSVQTQGSGGVW 500
           Q+SA ++E +   +VQ QGS GVW
Sbjct: 488 QRSASDEEED--GTVQRQGSAGVW 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15724206|gb|AAL06496.1|AF412043_1 AT5g04420/T32M21_20 [Arabidopsis thaliana]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/504 (66%), Positives = 412/504 (81%), Gaps = 6/504 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           +D G WH  L +D W  LPVSG+R S RYKHAA V D+KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 61  RSLAWSNLRLETELD-ADKTED---SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116
           RSL WS+L+L+TE   AD  ++   S L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct: 68  RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query: 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176
           M+VRFIDLET+ CGV++  G VP +R GHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct: 128 MLVRFIDLETHSCGVIDVFGNVPASRDGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query: 177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 296
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 356
           GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 357 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 416
           YA+AKS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query: 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 476
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 477 QKSAFEQEMERATSVQTQGSGGVW 500
           Q+SA ++E +   +VQ QGS GVW
Sbjct: 488 QRSASDEEED--GTVQRQGSAGVW 509

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810527|ref|XP_002873147.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318984|gb|EFH49406.1| kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/504 (66%), Positives = 410/504 (81%), Gaps = 6/504 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           +D G WH  L +D W  LPVSG+R S RYKHAA V D+KLYIVGGSRNGR+LSDVQVFDL
Sbjct: 8   IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query: 61  RSLAWSNLRLETELDADKT--EDSG--LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116
            SL WS+L+L TE  + +   ED G  L E  P +SDH M+KWG  LL++GGH KKSSD+
Sbjct: 68  TSLTWSSLKLITESSSAENIQEDDGSSLREAFPAISDHRMIKWGNMLLLIGGHSKKSSDN 127

Query: 117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176
           + VRFIDLET+LCGV + SG VP +RGGHS+TLVGSR+++FGGED++R+LLND+H LDLE
Sbjct: 128 ISVRFIDLETHLCGVFDVSGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLDLE 187

Query: 177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
           TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct: 188 TMTWDIVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query: 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 296
           +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct: 248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query: 297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAA 356
           GLSVCSA + GE+ LVAFGGYNGKYNN+++VM LKP +   PKIF+SPAAAAAAASVTAA
Sbjct: 308 GLSVCSASVFGENILVAFGGYNGKYNNDIYVMILKPGESSHPKIFKSPAAAAAAASVTAA 367

Query: 357 YALAKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 416
           YA+AKS+K D P   +    GIG+ L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct: 368 YAIAKSDKSDYPPPANPTLNGIGSSLPERDIRNRIDTIKEEKRSLESSVAETQVENAKLR 427

Query: 417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 476
           EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct: 428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query: 477 QKSAFEQEMERATSVQTQGSGGVW 500
           Q+S  + E E  T VQ QGSGGVW
Sbjct: 488 QRSVSD-EGEDGT-VQRQGSGGVW 509

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576361|ref|XP_003556301.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max]

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/509 (64%), Positives = 411/509 (80%), Gaps = 8/509 (1%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
           M+  +WH EL YD WV + VSGARP+ RYKHAAAV D+KLYI GGSRNGR LSDVQVFDL
Sbjct: 1   MEVNNWHKELKYDEWVPITVSGARPAARYKHAAAVVDEKLYIAGGSRNGRHLSDVQVFDL 60

Query: 61  RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR 120
           RSL WS+L+L+  +  D  +D    E+LP  S H M++WG KLL+LGG+ ++SS  + VR
Sbjct: 61  RSLTWSSLKLKANVRKD--DDDSSQEILPATSGHNMIRWGEKLLLLGGNSRESSAELTVR 118

Query: 121 FIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
           +ID+ET   GV++TSG VPVAR G S +L GSR+I+FGGE+ SRKLLNDVH LDLE+MTW
Sbjct: 119 YIDIETCQFGVIKTSGDVPVARVGQSASLFGSRVILFGGEEMSRKLLNDVHVLDLESMTW 178

Query: 181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
           + ++ TQTPPAPRYDHSAA+   RYL++FGGCSHSIFFNDLH+LD+QT EWSQP+ +GDL
Sbjct: 179 EMIKTTQTPPAPRYDHSAAIQGERYLLIFGGCSHSIFFNDLHLLDMQTMEWSQPQTQGDL 238

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 300
           V+ RAGH GITIDE+W IVGGGDN +GC ET+VL+M+KL WS+LT VK ++PL+SEGLSV
Sbjct: 239 VSPRAGHTGITIDESWLIVGGGDNRSGCPETLVLDMSKLVWSVLTVVKQKDPLSSEGLSV 298

Query: 301 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA 360
           CSA I GE +L+AFGGYNG+Y+NEVFVMR K +D  RPKIFQSPAAAAAAASVT+AYAL+
Sbjct: 299 CSATIGGEKYLLAFGGYNGRYSNEVFVMRPKAKDTMRPKIFQSPAAAAAAASVTSAYALS 358

Query: 361 KSEKLDIPK--TLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREK 418
           KSEKLD  +   ++SK +  G+   + DV   ++AIKE+KR+LELS+ EVR ENS+   +
Sbjct: 359 KSEKLDFMQLDDINSKLSVNGH--HKDDVVDKVEAIKEEKRLLELSIAEVRAENSKLGGE 416

Query: 419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQK 478
           I+E+N+TH+EL+KEL SVQGQLVAERSRCF LEA+IAELQK+LES Q++E EVQ LR++K
Sbjct: 417 IEEINNTHAELTKELQSVQGQLVAERSRCFNLEAKIAELQKLLESMQSVEEEVQALREKK 476

Query: 479 SAFEQEMERATSVQTQGSGGVWRWIAGGQ 507
           SA +QEME A + +++ SG  WRW  G +
Sbjct: 477 SALDQEMELAATAESKSSG--WRWFGGSE 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115449833|ref|NP_001048563.1| Os02g0822800 [Oryza sativa Japonica Group] gi|48716304|dbj|BAD22917.1| acyl-CoA binding protein-like [Oryza sativa Japonica Group] gi|55773890|dbj|BAD72475.1| acyl-CoA binding protein-like [Oryza sativa Japonica Group] gi|113538094|dbj|BAF10477.1| Os02g0822800 [Oryza sativa Japonica Group] gi|222623936|gb|EEE58068.1| hypothetical protein OsJ_08927 [Oryza sativa Japonica Group]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 266/499 (53%), Positives = 358/499 (71%), Gaps = 7/499 (1%)

Query: 11  PYDLWVTLPVSGA--RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68
           PYD W+    +G   RPS RYKHAA V  +KLY+VGGSRNGR+LSD+QVFD R+L WS L
Sbjct: 16  PYDQWLPFSPAGGSPRPSARYKHAAEVVREKLYVVGGSRNGRYLSDIQVFDFRTLKWSAL 75

Query: 69  RLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS-SDSMIVRFIDLETN 127
               +      E++      P ++ H +V W   ++++ G+ + S S+ + V  I++ETN
Sbjct: 76  SAARDSSQLNIENNTTDPSFPALAGHSLVNWKKYIVVVAGNTRTSTSNKVSVWLINVETN 135

Query: 128 LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ 187
               ++T GKVP++RGG SV+LVGSRLI+FGGED  R+LLND+H LDLETM W+ V+  +
Sbjct: 136 SWSSVDTYGKVPISRGGQSVSLVGSRLIMFGGEDNKRRLLNDLHILDLETMMWEEVKTGK 195

Query: 188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 247
             PAPRYDHSAA++A++YL++FGG SHS  F+D+++LDLQT EWSQP+ +G  +  R+GH
Sbjct: 196 GGPAPRYDHSAAVYADQYLLIFGGSSHSTCFSDIYLLDLQTMEWSQPDTQGAHINPRSGH 255

Query: 248 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG 307
           AG  IDENWYIVGGGDN +G  +TI++N +K  WS++TSV  R+PLA EGL++CS  ++G
Sbjct: 256 AGTMIDENWYIVGGGDNASGSTDTIMMNASKFVWSVVTSVPARDPLACEGLTLCSTTVDG 315

Query: 308 EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALAKSEKL-D 366
           E  LVAFGGYNG+YNNE+FVM+LKPR++ +P++ QSPAAAAAAASVTAAYA+   EK  D
Sbjct: 316 EKFLVAFGGYNGQYNNEIFVMKLKPRNLVQPRLLQSPAAAAAAASVTAAYAVITDEKTRD 375

Query: 367 IPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTH 426
           I  T       +    S K + T++DA+  +K  LE  L EVR ENS+ ++++D V  +H
Sbjct: 376 IVATDDLDVKRVQPSGSSKQITTELDALNGEKGKLESRLAEVRDENSKLKDRLDMVKLSH 435

Query: 427 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 486
            EL+KEL SVQ QL AE SRC KLE+QIA   K LES+ ++ENE+++LRQQ S  EQ M 
Sbjct: 436 GELTKELKSVQHQLAAEGSRCQKLESQIAAAHKRLESTDSLENELEVLRQQISQVEQTM- 494

Query: 487 RATSVQTQGSGGVWRWIAG 505
             T+ Q Q SGGVW+W+AG
Sbjct: 495 --TTAQRQKSGGVWKWVAG 511

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357137701|ref|XP_003570438.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Brachypodium distachyon]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/503 (52%), Positives = 355/503 (70%), Gaps = 13/503 (2%)

Query: 11  PYDLWVTL-PVSGA-RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68
           PYD WV L P  G+ RP  RYKHAA V   KLY+VGGSRNGR LSDVQVFD R+  WS  
Sbjct: 18  PYDSWVLLRPADGSSRPPARYKHAAEVIQDKLYVVGGSRNGRSLSDVQVFDFRTFKWSVS 77

Query: 69  RLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI-VRFIDLETN 127
               + +    E++   +  P ++ H +VKW   L+++ G+ + SS + + V  ID+ETN
Sbjct: 78  SPSRDSNQLNLENNAGNQPFPALAGHSLVKWKNNLVVVAGNSRASSSNKVSVWLIDVETN 137

Query: 128 LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ 187
               ++T GKVPVAR G SV+L+GS+LI+FGGED  R+LL+D+H LDLETM W+ ++  +
Sbjct: 138 SWSAVDTYGKVPVARSGQSVSLIGSQLIMFGGEDNKRRLLSDLHILDLETMIWEEIKTEK 197

Query: 188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH 247
             PAPRYDHSAA++A+ YL++FGG SHS  F+D+++LDLQT EWSQP+ +G  +T R+GH
Sbjct: 198 GGPAPRYDHSAAVYADHYLLIFGGSSHSTCFSDMYLLDLQTLEWSQPDTQGANITPRSGH 257

Query: 248 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG 307
           AG  IDENWYIVGGGDN +G  +TIV+N +K  WS++TSV  R+ LA EGL++CS  I+G
Sbjct: 258 AGTMIDENWYIVGGGDNASGSTDTIVMNASKFVWSVVTSVSIRDSLACEGLTLCSTTIDG 317

Query: 308 EHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPAAAAAAASVTAAYALA-----KS 362
           E  L+AFGGYNGKYNNEVFVM+ KPR+  +P++ QSPAAAAAAASVTAAYA+      K+
Sbjct: 318 EKFLIAFGGYNGKYNNEVFVMKPKPRNFVQPRLLQSPAAAAAAASVTAAYAVVTATDEKT 377

Query: 363 EKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEV 422
             +     L  K A  G+  S K    +IDA+  +K  LE  L EVR ENS+ ++K+D V
Sbjct: 378 RDIVAADDLDVKRAEPGS--SSKQTVAEIDALNWEKGKLESQLAEVRAENSKLKDKLDTV 435

Query: 423 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE 482
             ++SEL+KEL SV+ QL AE SRC KLE+QIA   K L+S+ ++ENE+++L+QQ S  E
Sbjct: 436 KLSYSELTKELRSVENQLAAEGSRCQKLESQIAATNKRLQSADSLENELEVLQQQISQVE 495

Query: 483 QEMERATSVQTQGSGGVWRWIAG 505
           Q M   T+ Q + SGGVW+W+AG
Sbjct: 496 QTM---TTAQRRKSGGVWKWVAG 515

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	507
TAIR|locus:2184352	514	AT5G04420 [Arabidopsis thalian	0.982	0.968	0.646	3.5e-178
TAIR|locus:2143676	648	ACBP5 "acyl-CoA binding protei	0.927	0.725	0.434	1.4e-105
TAIR|locus:2183008	708	AT5G18590 [Arabidopsis thalian	0.601	0.430	0.368	6.1e-62
DICTYBASE|DDB_G0280765	777	DDB_G0280765 "Kelch repeat-con	0.475	0.310	0.309	2.2e-28
MGI|MGI:2139530	380	Rabepk "Rab9 effector protein	0.504	0.673	0.285	8.6e-25
RGD|1310612	372	Rabepk "Rab9 effector protein	0.504	0.688	0.289	1.1e-24
UNIPROTKB|F1SKQ3	370	RABEPK "Uncharacterized protei	0.504	0.691	0.282	5.2e-24
DICTYBASE|DDB_G0268860	943	rngB "Kelch repeat-containing	0.465	0.250	0.309	3.7e-23
UNIPROTKB|Q5EA50	372	RABEPK "Rab9 effector protein	0.508	0.693	0.273	2.1e-22
UNIPROTKB|Q7Z6M1	372	RABEPK "Rab9 effector protein	0.453	0.618	0.288	5.7e-20

TAIR|locus:2184352 AT5G04420 [Arabidopsis thaliana (taxid:3702)]

 Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
 Identities = 326/504 (64%), Positives = 397/504 (78%)

Query:     1 MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
             +D G WH  L +D W  LPVSG+R S RYKHAA V D+KLYIVGGSRNGR+LSDVQVFDL
Sbjct:     8 IDVGDWHSNLAHDEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDL 67

Query:    61 RSLAWSNLRLETELD-ADKT-EDSG--LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 116
             RSL WS+L+L+TE   AD   ED G  L E  P +SDH M+KWG KLL++GGH KKSSD+
Sbjct:    68 RSLTWSSLKLKTESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDN 127

Query:   117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 176
             M+VRFIDLET+ CGV++  G VP +RGGHS+TLVGSR+++FGGED++R+LLND+H L LE
Sbjct:   128 MLVRFIDLETHSCGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLE 187

Query:   177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
             TMTWD VE  QT P PR+DH+AA H++RYL++FGGCSHSIF++DLH+LDLQT EWSQP +
Sbjct:   188 TMTWDVVETKQTRPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHV 247

Query:   237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 296
             +GD+VT RAGHAGITIDENWYIVGGGDN+ GC ET+VLNM+KL WS  T V+ R+PLASE
Sbjct:   248 QGDVVTPRAGHAGITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASE 307

Query:   297 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPXXXXXXXXXXXX 356
             GLSVCSA + GE+ LVAFGGYNGKYNN++FVMRLKP +   PKIF+SP            
Sbjct:   308 GLSVCSASVFGENILVAFGGYNGKYNNDIFVMRLKPGESSHPKIFKSPAAAAAAASVTAA 367

Query:   357 XXXXKSEKLDIPKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFR 416
                 KS+K D P   +    G GN L E+D+R  ID IKE+KR LE S+ E + EN++ R
Sbjct:   368 YAIAKSDKSDYPPPANPTLNGNGNSLPERDIRNRIDTIKEEKRALESSIAETQVENAKLR 427

Query:   417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 476
             EKIDEVNS+H+ELS+EL SV+GQL++ERSRCFKLEAQIAELQK LES Q+IE EV++LR+
Sbjct:   428 EKIDEVNSSHTELSQELQSVEGQLISERSRCFKLEAQIAELQKALESGQSIEAEVEMLRR 487

Query:   477 QKSAFEQEMERATSVQTQGSGGVW 500
             Q+SA ++E E  T VQ QGS GVW
Sbjct:   488 QRSASDEE-EDGT-VQRQGSAGVW 509

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

TAIR|locus:2143676 ACBP5 "acyl-CoA binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 213/490 (43%), Positives = 306/490 (62%)

Query:    12 YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLE 71
             Y+ W     SG  P  RY+H AAV   K+Y+ GG+ NGR+L D+ V DL++  WS  R+E
Sbjct:   169 YNQWTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWS--RVE 226

Query:    72 TELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 131
             T++     E S   + L   + H ++ W  +LL +GGH K  S+SM V   DL      +
Sbjct:   227 TKVVTGSQETSSPAK-LTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSI 285

Query:   132 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA 191
             ++T GK P++RGG SVTLVG  L+IFGG+D  R LLND+H LDL+TMTW+ ++   +PP 
Sbjct:   286 LKTYGKPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPT 345

Query:   192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
             PR DH+AA+HA RYL++FGG SH+  F+DLHVLDLQT EWS+   +GD  T RAGHAG+T
Sbjct:   346 PRSDHAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVT 405

Query:   252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311
             I ENWYIVGGGDN +G  +T+VLNM+ LAWS++TSV+   PLASEGLS+  +   GE  +
Sbjct:   406 IGENWYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIV 465

Query:   312 VAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSPXXXXXXXXXXXXXXXXKSEKLDIPKTL 371
             VAFGGYNG YNNEV V++   +   + KI  +                      DI   +
Sbjct:   466 VAFGGYNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDSFSAVNNATTR------DIESEI 519

Query:   372 SSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK 431
               K  G  + +        I  +K +K  +E SL + + +  + +E++ E+++ ++EL K
Sbjct:   520 --KVEGKADRI--------ITTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTRNTELYK 569

Query:   432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS-AFEQEMERATS 490
             EL SV+ QL AE+SRCFKLE ++AEL++ L++ +T++ E+++L++Q++ A EQ       
Sbjct:   570 ELQSVRNQLAAEQSRCFKLEVEVAELRQKLQTMETLQKELELLQRQRAVASEQAATMNAK 629

Query:   491 VQTQGSGGVW 500
              Q+ G    W
Sbjct:   630 RQSSGGVWGW 639

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006869 "lipid transport" evidence=RCA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009416 "response to light stimulus" evidence=TAS

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2183008 AT5G18590 [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
 Identities = 115/312 (36%), Positives = 170/312 (54%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETEL 74
             W+ L V+G +P+PR+ HAAA    K+ +VGG      L DVQV +  S  WS    +  L
Sbjct:    66 WMVLSVNGEKPAPRFNHAAATIGNKMIVVGGESGSGLLDDVQVLNFDSCTWSTASSKVYL 125

Query:    75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET 134
                    S L  ++P    HC+V WG K+L++GG    SSD + V   D ++    +M+ 
Sbjct:   126 SP-----SSLPLMIPAWKGHCLVSWGKKVLLVGGKTDPSSDRVSVWAFDTDSECWSLMDA 180

Query:   135 SGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 194
              G +PV+R GH+V    S LI+FGGED  ++ LND+H  DL++ TW  +  T T P  R 
Sbjct:   181 KGDLPVSRSGHTVVRASSVLILFGGEDSKKRKLNDLHMFDLKSSTWLPLNCTGTRPCARS 240

Query:   195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 254
              H A L  ++ L VFGG   +   NDL+ LD +T  WS+ +I+G   + RAG  G+    
Sbjct:   241 HHVATLFDDKILFVFGGSGKNKTLNDLYSLDFETMVWSRIKIRGFHPSPRAGSCGVLCGT 300

Query:   255 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLAS-EGLSVCSAIIEGEHHLVA 313
              WYI GGG       ET+V ++ K+ WS+  S+  ++ + S +G S+     + +  LVA
Sbjct:   301 KWYITGGGSRKKRHAETLVFDILKVEWSV-ASISSQSSVTSNKGFSLVLLQHKDKDFLVA 359

Query:   314 FGGYNGKYNNEV 325
             FGG     +N+V
Sbjct:   360 FGGTKKDPSNQV 371

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

DICTYBASE|DDB_G0280765 DDB_G0280765 "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 319 (117.4 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
 Identities = 82/265 (30%), Positives = 129/265 (48%)

Query:    14 LWVTLPVSGARPSPRYKHAAAVFD-------QKLYIVGGSRNGRFLSDVQVFDLRSLAWS 66
             +W  +      PS RY H A + +       Q++ I GG    ++L+D+   +LR+++WS
Sbjct:    69 VWSEVNTVDKGPSGRYGHTATLLEDINDPNNQRVMIFGGKSGKKYLNDLFSLNLRTMSWS 128

Query:    67 NLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG-HYKKSSDSMIVRFIDLE 125
                 E     D         V PP++    +    ++++ GG H  K  +S  +  +DL 
Sbjct:   129 TFHFEKSTLPDSRAGHTSTYV-PPIN----INGSLRMVVFGGSHSDKYLNSCFI--LDLP 181

Query:   126 TNLCGVM-----ETSGKVPVARGGHSVTLVGSR--LIIFGGEDRSRKLLNDVHFLDLETM 178
              +  G +     +  GK P  R GH+   +  R  ++IFGG D  RK  ND+H L++  M
Sbjct:   182 KSQAGTIKWIKPQIKGKAPSQRSGHTADYLKDRNSILIFGGFD-GRKSFNDLHLLNMTDM 240

Query:   179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW-SQPEIK 237
             +W AV+   T P  R  H++ L   RYL+ +GGCS S   ND+ +LD  +  W SQP I 
Sbjct:   241 SWTAVKTNGTTPTTRNGHTSVLVGGRYLVFYGGCSESNVSNDIQILDTDSFTWLSQPMIT 300

Query:   238 GDLVTGRAGHAGITIDENWYIVGGG 262
             G ++  R  H+   +D    IV GG
Sbjct:   301 GLILFPRFNHSSNLLDSGEMIVFGG 325

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:2139530 Rabepk "Rab9 effector protein with kelch motifs" [Mus musculus (taxid:10090)]

 Score = 287 (106.1 bits), Expect = 8.6e-25, P = 8.6e-25
 Identities = 80/280 (28%), Positives = 123/280 (43%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
             W TL   G RP PR  H+ + F         K++IVGG+   +  SDV   DL +  W  
Sbjct:    26 WYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTHQWDT 85

Query:    68 LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
                E  L   + E +  L   P  S H +  W     + GG   +S +   ++ +  E  
Sbjct:    86 ATREGLLP--RYEHASFL---PSCSPHSI--W-----VFGGA-DQSGNRNCLQVMSPEDR 132

Query:   128 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                  E +G  P  R  H S   +G++L +FGG +R  + + DV  H  D  T+TW   E
Sbjct:   133 TWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPE 192

Query:   185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
                +PP+PR+ H   + A   L + GG +   FF+DLH +D+    W +    G +  G 
Sbjct:   193 THGSPPSPRHGH-VMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGC 251

Query:   245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
             A HA + +  + Y+ GG             +  K  W++L
Sbjct:   252 AAHAAVAVGHHVYMFGGMTATGALNMMYKYHTEKQHWTVL 291

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1310612 Rabepk "Rab9 effector protein with kelch motifs" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 81/280 (28%), Positives = 123/280 (43%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
             W TL   G +P PR  H+ + F         K++IVGG+   +  SDV   DL +  W  
Sbjct:    18 WYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDLGTHRWDT 77

Query:    68 LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
                E  L   + E +  L   P  S H +  W     + GG   +S +   ++ ++ E  
Sbjct:    78 ATREGLLP--RYEHASFL---PSCSPHSI--W-----VFGGA-DQSGNRNCLQVMNPEAR 124

Query:   128 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                  E +G  P  R  H S   +G+ L +FGG +R  + + DV  H  D  T+TW   E
Sbjct:   125 TWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDANTLTWAQPE 184

Query:   185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
                +PP+PR+ H A + A   L + GG +   FF+DLH +D+    W +    G    G 
Sbjct:   185 THGSPPSPRHGH-AMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGC 243

Query:   245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
             A HA + +  + Y+ GG             +  K  W+IL
Sbjct:   244 AAHAAVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTIL 283

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0010008 "endosome membrane" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

UNIPROTKB|F1SKQ3 RABEPK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 280 (103.6 bits), Expect = 5.2e-24, P = 5.2e-24
 Identities = 79/280 (28%), Positives = 130/280 (46%)

Query:    15 WVTLPVSGARPSPRYKHAAA----VFDQK---LYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
             W TL  +G  P  R  H+ +    V D K   ++IVGG+   R  SDV   DL +  W  
Sbjct:    18 WYTLTPTGDSPCARVGHSCSYLPPVGDSKRGKVFIVGGANPNRSFSDVHTMDLGTHQWDL 77

Query:    68 LRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN 127
                E  L   + E +  +   P  + H +  W     + GG   +S +   ++ ++ ET 
Sbjct:    78 TTSEGLLP--RYEHASFV---PSCAPHSI--W-----VFGGA-DQSGNRNCLQVLNPETR 124

Query:   128 LCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDAVE 184
                + E +   P  R  H S +++G++L +FGG +R  + + DV  H  D  T+TW   E
Sbjct:   125 TWTMPEVTSPPPSPRTFHTSSSVIGNQLYVFGGGERGAQPVQDVKLHVFDANTLTWSQPE 184

Query:   185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 244
                 PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   TG 
Sbjct:   185 TLGEPPSPRHGH-VMVAAGTKLFIHGGLAGDKFYDDLHCIDINDMKWQKLSPTGAAPTGC 243

Query:   245 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
             A H+ +T+ ++ YI GG             ++ K  W++L
Sbjct:   244 AAHSAVTVGKHVYIFGGMTPTGALDTMYQYHIEKQHWTLL 283

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 291 (107.5 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
 Identities = 84/271 (30%), Positives = 121/271 (44%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQK---------LYIVGGSRNGRFLSDVQVFDL---RS 62
             W  +   G  PS RY H+A ++  +         +   GG    +  SD+ +  +   RS
Sbjct:    55 WSKIEAVGNAPSERYGHSAVLYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRS 114

Query:    63 LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRF 121
               W  +  ++               +   + H  V +   L++ GGH   KS     V  
Sbjct:   115 FIWKQVTTKS---------------IEGRAGHTAVVYRQNLVVFGGHNNHKSKYYNSVLL 159

Query:   122 IDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTW 180
               LE+N        G +P AR  HS   V + ++ IFGG D  +K  ND+++LDLET  W
Sbjct:   160 FSLESNEWRQQVCGGVIPSARATHSTFQVNNNKMFIFGGYD-GKKYYNDIYYLDLETWIW 218

Query:   181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQ-TNE--WSQPEI 236
               VE   TPP PR  HSA +  N  L++FGGC S S F ND+H+L ++  NE  W QP  
Sbjct:   219 KKVEAKGTPPKPRSGHSATMIQNNKLMIFGGCGSDSNFLNDIHILHIEGANEYRWEQPSY 278

Query:   237 KG-DLVTGRAGHAGITIDENWYIVGGGDNNN 266
              G ++   R  H    I    YI  G  + N
Sbjct:   279 LGLEIPQARFRHTTNFIGGRVYIYAGTGSGN 309

GO:0005737 "cytoplasm" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5EA50 RABEPK "Rab9 effector protein with kelch motifs" [Bos taurus (taxid:9913)]

 Score = 271 (100.5 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 77/282 (27%), Positives = 127/282 (45%)

Query:    13 DLWVTLPVSGARPSPRYKHAAA----VFDQ---KLYIVGGSRNGRFLSDVQVFDLRSLAW 65
             + W TL + G  P  R  H+ +    V D    K++IVGG+   R  SDV   DL +  W
Sbjct:    16 ETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDVHTIDLGTHQW 75

Query:    66 SNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 125
                  E  L   + E +  +   P  + H +  W     + GG   +S +   ++ ++ +
Sbjct:    76 DLATSEGLLP--RYEHTSFI---PSCTPHSI--W-----VFGGA-DQSGNRNCLQVLNPD 122

Query:   126 TNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLNDV--HFLDLETMTWDA 182
             T      E +G  P  R  H S   +G +L +FGG +R  + + DV  H  D  T+TW  
Sbjct:   123 TRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDANTLTWSQ 182

Query:   183 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 242
              E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   T
Sbjct:   183 PETHGKPPSPRHGH-VMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPT 241

Query:   243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL 284
             G A H+ + + ++ Y+ GG             ++ K  W++L
Sbjct:   242 GCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHWTLL 283

GO:0010008 "endosome membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q7Z6M1 RABEPK "Rab9 effector protein with kelch motifs" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 75/260 (28%), Positives = 118/260 (45%)

Query:    15 WVTLPVSGARPSPRYKHAAAVFDQ-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSN 67
             W TL V G  P  R  H+ +           K++IVGG+   R  SDV   DL    W  
Sbjct:    18 WYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDLGKHQW-- 75

Query:    68 LRLETELDADKTEDSGLLEVLPPMSDHC-MVKWGT--KLLILGGHYKKSSDSMIVRFIDL 124
                  +LD  K    GLL    P  +H   +   T  ++ + GG   +S +   ++ ++ 
Sbjct:    76 -----DLDTCK----GLL----PRYEHASFIPSCTPDRIWVFGGA-NQSGNRNCLQVLNP 121

Query:   125 ETNLCGVMETSGKVPVARGGH-SVTLVGSRLIIFGGEDRSRKLLND--VHFLDLETMTWD 181
             ET      E +   P  R  H S   +G++L +FGG +R  + + D  +H  D  T+TW 
Sbjct:   122 ETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDANTLTWS 181

Query:   182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV 241
               E    PP+PR+ H   + A   L + GG +   F++DLH +D+   +W +    G   
Sbjct:   182 QPETLGNPPSPRHGH-VMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAP 240

Query:   242 TGRAGHAGITIDENWYIVGG 261
              G A H+ + + ++ YI GG
Sbjct:   241 AGCAAHSAVAMGKHVYIFGG 260

GO:0010008 "endosome membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=TAS

GO:0006904 "vesicle docking involved in exocytosis" evidence=TAS

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018098001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (508 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	507
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	6e-10
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	4e-09
pfam01344	46	pfam01344, Kelch_1, Kelch motif	7e-09
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	1e-08
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	3e-08
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	3e-07
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	4e-07
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	6e-07
pfam13854	42	pfam13854, Kelch_5, Kelch motif	1e-06
pfam13964	50	pfam13964, Kelch_6, Kelch motif	2e-06
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	5e-06
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	7e-06
pfam07646	48	pfam07646, Kelch_2, Kelch motif	9e-06
pfam01344	46	pfam01344, Kelch_1, Kelch motif	1e-05
PLN02193	470	PLN02193, PLN02193, nitrile-specifier protein	1e-05
pfam13854	42	pfam13854, Kelch_5, Kelch motif	1e-05
pfam07646	48	pfam07646, Kelch_2, Kelch motif	2e-05
pfam13854	42	pfam13854, Kelch_5, Kelch motif	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
pfam14073	178	pfam14073, Cep57_CLD, Centrosome localisation doma	9e-05
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	1e-04
TIGR03548	323	TIGR03548, mutarot_permut, cyclically-permuted mut	1e-04
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	1e-04
PLN02153	341	PLN02153, PLN02153, epithiospecifier protein	2e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
pfam07646	48	pfam07646, Kelch_2, Kelch motif	5e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	7e-04
pfam13964	50	pfam13964, Kelch_6, Kelch motif	9e-04
COG3055	381	COG3055, COG3055, Uncharacterized protein conserve	9e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR03547	346	TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.002
smart00612	47	smart00612, Kelch, Kelch domain	0.002
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	0.003
pfam13964	50	pfam13964, Kelch_6, Kelch motif	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
smart00612	47	smart00612, Kelch, Kelch domain	0.004
smart00787	312	smart00787, Spc7, Spc7 kinetochore protein	0.004

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 141 ARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192
            R  H+ T +G  RL +FGGE+    +L+DV   DL T TW     T+ P  P
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTW-----TRLPSLP 48

Length = 49

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH 201
           G ++ +FGG       LND+   DL+T TW   E     P PR  H+A + 
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 27 PRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68
          PR      V   K+Y++GG   G+ LS V+V+D  +  WS L
Sbjct: 1  PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKL 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 192 PRYDHSAALHANRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQ 233
           PR  H++    +  L +FGG +      +D+ V DL TN W++
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTR 43

Length = 49

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 6/145 (4%)

Query: 131 VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLN-DVHFLDLETMTWDAVEVTQTP 189
           V +  GK P  R  H + +VG +L  FGGE +  + ++ D++  D  T TW         
Sbjct: 12  VEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV 71

Query: 190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG---RAG 246
           P         +     L +FGG      F+D +  D   NEW+    K D   G   R  
Sbjct: 72  PRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTF-LTKLDEEGGPEARTF 130

Query: 247 HAGITIDENWYIVGGGDNNNGCQET 271
           H+ +  DEN   V GG +  G  +T
Sbjct: 131 HS-MASDENHVYVFGGVSKGGLMKT 154

Length = 341

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 51/267 (19%), Positives = 90/267 (33%), Gaps = 45/267 (16%)

Query: 28  RYKHAAAVFDQKLYIVGGS-RNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE 86
            Y   + V +  +Y +GG  +N   ++ V  +D ++ +W+ +    EL   +        
Sbjct: 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKV---PELIYPRKNPGV--- 338

Query: 87  VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHS 146
                       +  ++ ++GG Y   S +  V       +          +   R    
Sbjct: 339 ----------TVFNNRIYVIGGIYNSISLN-TVESWKPGES---KWREEPPLIFPRYNPC 384

Query: 147 VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYL 206
           V  V + + + GG  ++ +LL  V    L T  W         P   Y   A  H    +
Sbjct: 385 VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDG-KI 440

Query: 207 IVFGGCSHS---IFFNDLHVLDLQTNEWS------QPEIKGDLVTGRAGHAGITIDENWY 257
            V GG S+      +N +   +  TN+W+       P I           A + I  N  
Sbjct: 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN----------ASLCIFNNKI 490

Query: 258 IVGGGDNNNGCQETI-VLNMTKLAWSI 283
            V GGD        I V +     W++
Sbjct: 491 YVVGGDKYEYYINEIEVYDDKTNTWTL 517

Length = 534

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 132 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLND-VHFLDLETMTWDAVEVTQTPP 190
           +E  G+ P  R  H +  VG+++  FGGE    + ++  ++  DLET TW     T   P
Sbjct: 156 VEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP 215

Query: 191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHA 248
                    +     L VFGG   S  +N  +  D  TNEW    P  +G   T R+ H+
Sbjct: 216 HLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGP--TPRSFHS 273

Query: 249 GITIDENWYIVGG 261
               +EN Y+ GG
Sbjct: 274 MAADEENVYVFGG 286

Length = 470

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 22/51 (43%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 203 NRYLIVFGGCSHS-IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252
              + VFGG        NDL V DL TN W +    GDL   RAGHA   I
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 25 PSPRYKHAAAVFDQKLYIVGG--SRNGRFLSDVQVFDLRS 62
          P PR  H A V   ++Y+ GG  S NG+   DV V  L  
Sbjct: 2  PVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 144 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 193
           GHS   VG ++ +FGG     K  N V   D ET +W+ +      P PR
Sbjct: 4   GHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLP---PLPTPR 50

Length = 50

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 21/104 (20%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 464
           L E++ E +  +E++ E+    +EL +E   ++ +L    +   +L+ ++A ++++  ++
Sbjct: 68  LPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANA 127

Query: 465 QTIENEVQILRQQKSAFEQEMERATSVQTQGSGGV-WRW-IAGG 506
             ++ E + LR++ +  +QE E   +   +       RW + GG
Sbjct: 128 IELDEENRELREELAELKQENEALEAENERLQENEQRRWFLYGG 171

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 37/215 (17%)

Query: 26  SPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85
            PR      VF+ ++Y++GG  N   L+ V+ +      W   R E  L           
Sbjct: 331 YPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW---REEPPL----------- 376

Query: 86  EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVAR 142
             + P  + C+V     + ++GG  K       V    L TN       +      P++ 
Sbjct: 377 --IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL------PISH 428

Query: 143 GGHSVTLVGSRLIIFGG---EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA--PRYDHS 197
            G        ++ + GG    D   K+ N V   +  T  W     T+      PR + S
Sbjct: 429 YGGCAIYHDGKIYVIGGISYIDNI-KVYNIVESYNPVTNKW-----TELSSLNFPRINAS 482

Query: 198 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS 232
             +  N  + V GG  +  + N++ V D +TN W+
Sbjct: 483 LCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516

Length = 534

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 27 PRYKHAAAVFDQKLYIVGGSR--NGRFLSDVQVFDLRSLAWSNL 68
          PRY HA+ V   KLY+VGGS        SD+ V D  +  W+ L
Sbjct: 1  PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTEL 44

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 233
           PR      +     + V GG       + + V D +TN WS+
Sbjct: 1   PRSGAGVVVL-GGKIYVIGGYDGGQSLSSVEVYDPETNTWSK 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 71/320 (22%), Positives = 113/320 (35%), Gaps = 39/320 (12%)

Query: 15  WVTLPVSGARPSPRYKHAAAVFDQKLYIVGG--SRNGRFLSDVQVFDLRSLAWSNLRLET 72
           W+ +   G  P  R  H  A    K+Y  GG  + N      + VFDL +  WS      
Sbjct: 153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS------ 206

Query: 73  ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 132
              +  T D   L  L       MV  G+ L + GG       +    F D  TN   ++
Sbjct: 207 --ISPATGDVPHLSCL----GVRMVSIGSTLYVFGGRDASRQYNGFYSF-DTTTNEWKLL 259

Query: 133 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192
               + P  R  HS+      + +FGG   +   L  +   ++    W          + 
Sbjct: 260 TPVEEGPTPRSFHSMAADEENVYVFGGVS-ATARLKTLDSYNIVDKKWFHCSTPGDSFSI 318

Query: 193 RYDHSAALHANRYLIVFG--GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 250
           R      +   +  +V+G  GC      +D+H  D   ++W+Q E  G   + R+  A  
Sbjct: 319 RGGAGLEVVQGKVWVVYGFNGCE----VDDVHYYDPVQDKWTQVETFGVRPSERSVFASA 374

Query: 251 TIDENWYIVGG------------GDNNNGCQETIVLNMTKLAWSILTSVKGR--NPLASE 296
            + ++  I GG            G   +G   T  L+   L W  L         P +  
Sbjct: 375 AVGKHIVIFGGEIAMDPLAHVGPGQLTDG---TFALDTETLQWERLDKFGEEEETPSSRG 431

Query: 297 GLSVCSAIIEGEHHLVAFGG 316
             +  +  I+G+  LV  GG
Sbjct: 432 WTASTTGTIDGKKGLVMHGG 451

Length = 470

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 189 PPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTN 229
            P PR +H A +     + ++GG +       +D++VL L   
Sbjct: 1   LPVPRANHCAVVVGG-EIYLYGGYTSGNGQSSDDVYVLSLPGF 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 142 RGGHSVTLVGSRLIIFGG-EDRSRKLLNDVHFLDLETMTWDAVEVTQTP 189
           R  H+  +VG +L + GG         +D+  LD ET  W   E+   P
Sbjct: 2   RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWT--ELPALP 48

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 138 VPVARGGHSVTLVGSRLIIFGGED-RSRKLLNDVHFLDLET 177
           +PV R  H   +VG  + ++GG    + +  +DV+ L L  
Sbjct: 1   LPVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 4e-05
 Identities = 20/102 (19%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           +++  ++++++E    L+  + E+  +    +E+++E+     E  + L +++ +L +  
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 445 SRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 486
            R  +LE +I EL+   E  + +E ++  L ++    E+E+E
Sbjct: 821 QRRERLEQEIEELE---EEIEELEEKLDELEEELEELEKELE 859

Length = 1163

>gnl|CDD|206243 pfam14073, Cep57_CLD, Centrosome localisation domain of Cep57

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 382 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV 441
           L EK  R +++  + +  +  LS  E         E+  E N   +EL+K+   +  QL 
Sbjct: 9   LQEKIRRLELERTQAEDNLQTLS-REATHYKKVLEEEEQERNLAANELTKQNKDLTSQLS 67

Query: 442 AERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQG 495
           +  SRC  LE Q+  +++M+E+++       +L QQ S   ++      VQ Q 
Sbjct: 68  SAESRCSLLEKQLEYMRRMVENAEK--ERTAVLEQQVSLQREKEHDQMDVQAQL 119

The CLD or centrosome localisation domain of Cep57 is found at the N-terminus, and lies approximately between residues 58 and 239. This region lies within the first alpha-helical coiled-coil segment of Cep57, and localises to the centrosome internally to gamma-tubulin, suggesting that it is either on both centrioles or on a centromatrix component. This N-terminal region can also multimerise with the N-terminus of other Cep57 molecules. The C-terminal part, Family Cep57_MT_bd, pfam06657, is the microtubule-binding region of Cep57. Length = 178

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 27/206 (13%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNG-------RFLSDVQVFDLRSLAWSNLRLETELDAD 77
           P  R  H+ A  +  +Y+ GG   G       RF + ++ +++    W  L    E + +
Sbjct: 125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT-IEAYNIADGKWVQLPDPGE-NFE 182

Query: 78  KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK 137
           K   +G   V         V +G    IL G  K   +S  V+F D  +     +ET+G 
Sbjct: 183 KRGGAGFAVV----QGKIWVVYGFATSILPGG-KSDYESNAVQFFDPASGKWTEVETTGA 237

Query: 138 VPVARGGHSVTLVGSRLIIFGGE---DRSR-----KLLNDVHFLDLETMTWDAVEVTQTP 189
            P AR   +  +VG  +IIFGGE   D         L N+ + LD ET+ W+ +     P
Sbjct: 238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEP 297

Query: 190 PAPR----YDHSAALHANRYLIVFGG 211
             PR    Y  +A ++    L++ GG
Sbjct: 298 AMPRGWTAYT-TATVYGKNGLLMHGG 322

Length = 341

>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 50/234 (21%), Positives = 83/234 (35%), Gaps = 44/234 (18%)

Query: 32  AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM 91
           +A   D KLY+ GG+ NG+  +    F+L +  W  L           +  G   V P  
Sbjct: 118 SATYKDGKLYVGGGNANGKPSNKFYCFNLETQEWEEL----------PDFPGAPRVQP-- 165

Query: 92  SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME--TSGKVPVA-RGGHSVT 148
                VK   +L + GG    +           +T     +    S   P++  G  S+ 
Sbjct: 166 ---VCVKLQNELYVFGGGDNIAYTD--GYKYSPKTGTWEKVADPLSDGEPISLLGAASIA 220

Query: 149 LVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 208
           +  S L+  GG +    + ND   + L TM                D S   +A  Y   
Sbjct: 221 INESLLLCIGGFN--YDVFNDA-VIRLATMK---------------DESLKSYAAEY--- 259

Query: 209 FGGCSHSIFFND-LHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG 261
           F        +ND + + D+++ +W    I       R G A +    N +++ G
Sbjct: 260 FLHPPDWYRWNDKVLIYDVRSGKWK--SIGNSPFVARCGAALLLTGNNLFVING 311

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 52/234 (22%), Positives = 77/234 (32%), Gaps = 57/234 (24%)

Query: 140 VARGGHSVTLVGSRLIIFGG-----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 194
             R       +  +L +FGG      + S ++ +DV+  D +  +W  ++     P    
Sbjct: 52  GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLL 109

Query: 195 DHSAALHANRYLIVFGGCSHSIF---FNDL-----------------------------H 222
             S     N      GG + +IF   F DL                             +
Sbjct: 110 GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169

Query: 223 VL--DLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ--ETIVLNMT- 277
           VL  D  TN+W        L  G AG + I    N  ++  G+   G +  E      T 
Sbjct: 170 VLSYDPSTNQWRNLGENPFL--GTAG-SAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226

Query: 278 -KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGY---------NGKY 321
            KL W+ L  +      + EGL+   A I     LVA G           NGK 
Sbjct: 227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKL 280

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 78/341 (22%), Positives = 123/341 (36%), Gaps = 66/341 (19%)

Query: 15  WVTLPVSGAR-PSPRYKHAAAVFDQKLYIVGG--SRNGRFLSDVQVFDLRSLAWSNLRLE 71
           W+ +   G + P PR  H  AV   KLY  GG    N     D+ VFD  +  WS     
Sbjct: 9   WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS----- 63

Query: 72  TELDADKTEDSGLLEVLPPMSD----HC----MVKWGTKLLILGGHYKKSSDSMIVRFID 123
                          + P   D     C    MV  GTKL I GG  +K   S    +  
Sbjct: 64  ---------------IAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDT 108

Query: 124 LE---TNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
           ++   T L  + E  G  P AR  HS+    + + +FGG  +   +     F  +E    
Sbjct: 109 VKNEWTFLTKLDEEGG--PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166

Query: 181 DAVEVTQTP-PAPRYDHSA----ALHANRYLIVFGGCSHSI-------FFNDLHVLDLQT 228
              +  Q P P   ++       A+   +  +V+G  +  +         N +   D  +
Sbjct: 167 ADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPAS 226

Query: 229 NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG------------GDNNNGCQETIVLNM 276
            +W++ E  G   + R+  A   + +   I GG            G  +N   E   L+ 
Sbjct: 227 GKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSN---EGYALDT 283

Query: 277 TKLAWSILTSVKGRNPLASEG-LSVCSAIIEGEHHLVAFGG 316
             L W  L   +   P    G  +  +A + G++ L+  GG
Sbjct: 284 ETLVWEKLG--ECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322

Length = 341

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 20/106 (18%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 442
           +   ++ +I+ ++E ++ L+  L E+  E      ++D +      L +    ++ ++  
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832

Query: 443 ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 488
                 +LE ++ EL++ LE    +E E++ L+++    E E E  
Sbjct: 833 LEEEIEELEEKLDELEEELEE---LEKELEELKEELEELEAEKEEL 875

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 11/121 (9%)

Query: 383 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 442
             K+   +++ +  + + LE  L E+R E S   E+I+E+      L+ E+S ++ Q   
Sbjct: 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306

Query: 443 ERSR-------CFKLEAQIAELQKML----ESSQTIENEVQILRQQKSAFEQEMERATSV 491
            R R         +LEAQ+ EL+  L    E    +E +++ L+++  + E E+E   + 
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

Query: 492 Q 492
            
Sbjct: 367 L 367

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 192 PRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWS 232
           PRY H++ +   + L V GG +    +  +DL VLD +TN W+
Sbjct: 1   PRYPHASVVVGGK-LYVVGGSTGLGDLSSSDLWVLDPETNVWT 42

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 367 IPKTLS---SKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 423
           I K L    ++   +   L   ++   ++ ++     LE  + E+R    R  EK+  V 
Sbjct: 29  IRKALKKAKAELEALNKALEALEIE--LEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86

Query: 424 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT--------IENEVQILR 475
                  +EL ++  ++   + R   LE ++AEL + +E  +         +E   + L 
Sbjct: 87  D-----ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141

Query: 476 QQKSAFEQEME 486
           + ++  E+E+ 
Sbjct: 142 EAEARLEEEVA 152

Length = 239

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 22/112 (19%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 384 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 443
            +++R +++ ++E+   L+  + E+  E S  RE+++E+ +   EL + L  ++ ++ A 
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEAL 335

Query: 444 RSRCFKLEAQIAEL-QKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 494
           +    + E  + EL Q + E  +  E   + L       E+  E       +
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387

Length = 1163

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 141 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW 180
            R G  V ++G ++ + GG D  +  L+ V   D ET TW
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYDGGQ-SLSSVEVYDPETNTW 39

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 192 PRYDHSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQ 233
           PR  HSA       + VFGG  + S   N + V D +T  W +
Sbjct: 1   PRTGHSAVSVGG-KIYVFGGYSNGSKASNKVLVYDPETGSWEK 42

Length = 50

>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 52/233 (22%), Positives = 74/233 (31%), Gaps = 70/233 (30%)

Query: 141 ARGGHSVTLVGSRLIIFGG----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR--Y 194
           AR      ++G +L +FGG       S ++ ND +  D  T +W  ++      +P    
Sbjct: 82  ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR----SPTGLV 137

Query: 195 DHSAALHANRYLIVFGGCSHSIF---FNDL---------------HVLDL---------- 226
             S        +  FGG + +IF   F D+               H  D           
Sbjct: 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE 197

Query: 227 ------QTNEWSQPEIKGDL-VTGRAGHAGITIDEN--WYIVG---GGDNNNGCQETIVL 274
                  TN+W      G+    G AG A + I  N    I G    G      ++    
Sbjct: 198 VLSYDPSTNQWR---NLGENPFYGNAGSA-VVIKGNKLTLINGEIKPGLRTAEVKQADFG 253

Query: 275 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 327
               L W                LS   A I      VA G ++GK N EV V
Sbjct: 254 GD-NLKWLK--------------LSDLPAPIGSNKEGVA-GAFSGKSNGEVLV 290

Length = 381

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 24/150 (16%)

Query: 364 KLDIPKTLSSKFAGIGNDLSEKDVRTD--IDAIKEDKRVLELSLTEV----------RTE 411
           + +I K L+     +  ++ E+  R D   +   E K  LE    E+          R E
Sbjct: 328 EAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386

Query: 412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL-------EAQIAELQKMLESS 464
              +REK++++    +EL +EL  +Q +L         L       EA+I EL++  E  
Sbjct: 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446

Query: 465 Q----TIENEVQILRQQKSAFEQEMERATS 490
                  E +++ L    S +EQE+     
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKE 476

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC------SHSIFFNDL 221
              + LDL+  +    ++   P  PR    AA      L VFGG            F+D+
Sbjct: 29  TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG-KLYVFGGIGKANSEGSPQVFDDV 87

Query: 222 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN 266
           +  D + N W +  +      G  G +G ++        GG N N
Sbjct: 88  YRYDPKKNSWQK--LDTRSPVGLLGASGFSLHNGQAYFTGGVNKN 130

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/97 (25%), Positives = 49/97 (50%)

Query: 388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 447
            ++++A+  ++  LE +L  +R+E     E++ E+ S  SEL +EL  ++ +L     R 
Sbjct: 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL 931

Query: 448 FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 484
             LE +I  LQ+ L    ++  E     + K   ++E
Sbjct: 932 EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 28/147 (19%), Positives = 60/147 (40%), Gaps = 20/147 (13%)

Query: 356 AYALAKSEKLDIPKTLSSK---FAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTEN 412
           A   AK+E   + K L +       +  +     + ++I  I+E  +  E  L+ V+ E 
Sbjct: 32  ALKKAKAELEALNKALEALEIELEDL--ENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89

Query: 413 SR---------FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 463
                       +E+I+ +    +EL +E+  ++ ++   + R  +LE  +AE +     
Sbjct: 90  ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE----- 144

Query: 464 SQTIENEVQILRQQKSAFEQEMERATS 490
              +E EV  +R++      + E    
Sbjct: 145 -ARLEEEVAEIREEGQELSSKREELKE 170

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 19/118 (16%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 377 GIGNDLSEKD----VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432
           GI    SE      +R  ++ +K +   L+  L  +        +++ + +    E+ KE
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724

Query: 433 LSSVQGQLVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSAFEQEME 486
           +  ++ +    + R  +LE  ++ L++ +E      + +E  ++ L +     E+ + 
Sbjct: 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN 782

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 18/100 (18%)

Query: 173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS------IFFNDLHVLDL 226
           LDL   +    ++   P  PR + + A   +  L VFGG   +        F+D++  D 
Sbjct: 55  LDLNAPSKGWTKIAAFPGGPR-EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDP 113

Query: 227 QTNEWSQPEIKGDLVT----GRAGHAGITIDENW-YIVGG 261
           +TN W +      L T    G AGH  +++     YI GG
Sbjct: 114 KTNSWQK------LDTRSPVGLAGHVAVSLHNGKAYITGG 147

Length = 376

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 206 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE 254
           + V GG         + V D +TN+W+       + T R+GH    I+ 
Sbjct: 2   IYVVGGFDGGQRLKSVEVYDPETNKWT---PLPSMPTPRSGHGVAVING 47

Length = 47

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 27 PRYKHAA-AVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWS 66
          PR  H + ++ D +LY+ GG + +G  LSDV VFDL +  W+
Sbjct: 1  PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWT 42

Length = 49

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 27 PRYKHAAAVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWS 66
          PR  H+A     K+Y+ GG S   +  + V V+D  + +W 
Sbjct: 1  PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWE 41

Length = 50

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 28/114 (24%), Positives = 65/114 (57%), Gaps = 4/114 (3%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           K++R +++ ++E+   LE  L E++ E     ++I+E+ S   EL +EL  +Q +L+  +
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 445 SRCFKLEAQIAELQKMLESS----QTIENEVQILRQQKSAFEQEMERATSVQTQ 494
               +LE +I+ L++ LE      + +E  ++ L+++  A ++E+E   ++  +
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 22/116 (18%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 373 SKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 432
           +K + +      K++  ++  ++     LE  L  ++ E     + ++E+     EL ++
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 433 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 488
           L  ++ +L A       LE ++ +LQ  LE    +E E++ L ++    ++ +E  
Sbjct: 718 LEELKRELAA-------LEEELEQLQSRLEE---LEEELEELEEELEELQERLEEL 763

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 6/117 (5%)

Query: 371 LSSKFAGIGNDLSE-KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 429
           LSS    I N  SE K++   I+ ++ED   LE +L ++  E      +I E+ +  S+L
Sbjct: 746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQAELSKL 803

Query: 430 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 486
            +E+S ++ +L        KL     E + + +  Q ++ +   L++Q  + E+E+E
Sbjct: 804 EEEVSRIEARLREIEQ---KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 140 VARGGHSVTLVGSRLIIFGG-----EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 194
             R       +  +L +FGG      + S ++ +DV+  D +T +W   ++    P    
Sbjct: 73  GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSW--QKLDTRSPVGLA 130

Query: 195 DHSAALHANRYLIVFGGCSHSIF---FNDLH 222
            H A    N    + GG + +IF   F DL 
Sbjct: 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLA 161

Length = 376

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 24/123 (19%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 369 KTLSSKFAGIGNDLSE-----KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN 423
             L ++   +  +L       + +   ++ ++     LE  L E++ E +   E+++++ 
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 424 STHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQ 483
           S   EL +EL  ++ +L   + R  +LE ++  L++ L     ++ E++ L +++ A ++
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAK---LKEEIEELEEKRQALQE 793

Query: 484 EME 486
           E+E
Sbjct: 794 ELE 796

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 22/106 (20%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           +++   ++ +K +   LE  L ++++      E+++E+     EL + L  ++ +L +  
Sbjct: 712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 445 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEME 486
               KL+ +I EL++  ++ Q     +E E++   ++  A E+E+E
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817

Length = 1163

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNL 68
          K+Y+VGG   G+ L  V+V+D  +  W+ L
Sbjct: 1  KIYVVGGFDGGQRLKSVEVYDPETNKWTPL 30

Length = 47

>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 384 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL---SKELSSV-QGQ 439
           ++ +  +++ +KED ++L   L  + +   + R++ D +     +L     EL      +
Sbjct: 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTE 205

Query: 440 LVAERSRCFKLEAQIAELQKMLE----SSQTIENEVQILRQQKSAFEQEMERATSV 491
           L   + +  KL  +I    K LE      Q +E++++ L  +KS    E+  A   
Sbjct: 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261

This domain is found in cell division proteins which are required for kinetochore-spindle association. Length = 312

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	507
PLN02193	470	nitrile-specifier protein	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02193	470	nitrile-specifier protein	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
KOG1230	521	consensus Protein containing repeated kelch motifs	100.0
PHA02790	480	Kelch-like protein; Provisional	99.97
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.97
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.82
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.76
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.71
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.59
PF13964	50	Kelch_6: Kelch motif	99.2
PLN02772	398	guanylate kinase	99.18
PF13964	50	Kelch_6: Kelch motif	99.1
PLN02772	398	guanylate kinase	99.01
PF03089	337	RAG2: Recombination activating protein 2; InterPro	99.0
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.96
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.95
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.94
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.93
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.91
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.86
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.84
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.81
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.8
PF13854	42	Kelch_5: Kelch motif	98.75
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.72
PF13854	42	Kelch_5: Kelch motif	98.65
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.54
smart00612	47	Kelch Kelch domain.	98.44
smart00612	47	Kelch Kelch domain.	98.4
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.17
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.14
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.71
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.12
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.91
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.87
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.82
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.75
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.66
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.62
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.6
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.6
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.45
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.33
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.26
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.2
KOG0646	476	consensus WD40 repeat protein [General function pr	96.17
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.1
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.03
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	96.02
PRK05137	435	tolB translocation protein TolB; Provisional	95.74
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.71
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.71
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.62
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.56
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.51
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.49
KOG2055	514	consensus WD40 repeat protein [General function pr	95.46
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.42
COG2433	652	Uncharacterized conserved protein [Function unknow	95.35
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.31
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.28
PRK04922	433	tolB translocation protein TolB; Provisional	95.27
PRK04792	448	tolB translocation protein TolB; Provisional	95.23
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.22
PRK10361	475	DNA recombination protein RmuC; Provisional	95.18
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.06
PRK05137	435	tolB translocation protein TolB; Provisional	95.05
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.05
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.97
KOG2055	514	consensus WD40 repeat protein [General function pr	94.95
COG4026	290	Uncharacterized protein containing TOPRIM domain,	94.94
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.92
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.89
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.86
PRK04792	448	tolB translocation protein TolB; Provisional	94.81
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.77
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.75
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.75
PRK00178	430	tolB translocation protein TolB; Provisional	94.68
PRK09039	343	hypothetical protein; Validated	94.65
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.63
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	94.63
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.44
COG2433	652	Uncharacterized conserved protein [Function unknow	94.41
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.41
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.29
COG4372	499	Uncharacterized protein conserved in bacteria with	94.27
PRK04043	419	tolB translocation protein TolB; Provisional	94.25
PRK11028	330	6-phosphogluconolactonase; Provisional	94.21
PRK04922	433	tolB translocation protein TolB; Provisional	94.08
PRK10884	206	SH3 domain-containing protein; Provisional	94.07
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	94.05
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	93.88
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.85
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	93.83
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.81
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	93.79
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.77
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	93.76
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.7
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	93.59
COG4942	420	Membrane-bound metallopeptidase [Cell division and	93.54
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	93.52
PRK13684	334	Ycf48-like protein; Provisional	93.39
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	93.37
COG4026	290	Uncharacterized protein containing TOPRIM domain,	93.35
PRK09039	343	hypothetical protein; Validated	93.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	93.29
KOG2321	703	consensus WD40 repeat protein [General function pr	93.23
PRK00178	430	tolB translocation protein TolB; Provisional	92.95
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	92.88
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	92.81
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	92.72
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.7
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	92.7
PRK02889	427	tolB translocation protein TolB; Provisional	92.64
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	92.61
PTZ00420	568	coronin; Provisional	92.6
PRK03629	429	tolB translocation protein TolB; Provisional	92.56
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.42
KOG2077	832	consensus JNK/SAPK-associated protein-1 [Signal tr	92.4
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	92.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	92.36
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	92.31
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.19
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	92.16
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	92.15
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.05
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	92.02
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	92.01
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.0
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	91.93
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.88
COG1322	448	Predicted nuclease of restriction endonuclease-lik	91.78
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.77
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	91.67
COG4942	420	Membrane-bound metallopeptidase [Cell division and	91.66
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	91.59
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	91.54
KOG0996	1293	consensus Structural maintenance of chromosome pro	91.5
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.49
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	91.43
COG4946	668	Uncharacterized protein related to the periplasmic	91.43
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.43
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	91.43
PRK13684	334	Ycf48-like protein; Provisional	91.38
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	91.36
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	91.34
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	91.32
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	91.16
KOG0249	916	consensus LAR-interacting protein and related prot	91.12
PRK00409	782	recombination and DNA strand exchange inhibitor pr	91.04
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	90.98
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	90.94
KOG0971	1243	consensus Microtubule-associated protein dynactin	90.92
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.89
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	90.84
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.83
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	90.82
PRK03629	429	tolB translocation protein TolB; Provisional	90.79
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	90.78
PTZ00266	1021	NIMA-related protein kinase; Provisional	90.78
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	90.75
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	90.75
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	90.67
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.51
KOG0649	325	consensus WD40 repeat protein [General function pr	90.4
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.39
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	90.37
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.36
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.36
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	90.25
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	90.09
PTZ00421	493	coronin; Provisional	90.08
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	90.07
KOG0996	1293	consensus Structural maintenance of chromosome pro	90.04
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.0
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.83
PRK04043	419	tolB translocation protein TolB; Provisional	89.78
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.75
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.58
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	89.56
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	89.45
PRK11028	330	6-phosphogluconolactonase; Provisional	89.4
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.39
PRK04863	1486	mukB cell division protein MukB; Provisional	89.28
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	89.26
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.24
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.24
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	89.2
PRK10698	222	phage shock protein PspA; Provisional	89.0
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	88.99
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	88.89
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	88.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	88.75
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	88.74
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	88.73
PLN00181	793	protein SPA1-RELATED; Provisional	88.69
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	88.63
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	88.52
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	88.51
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	88.48
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	88.39
PRK11546	143	zraP zinc resistance protein; Provisional	88.35
KOG2048	691	consensus WD40 repeat protein [General function pr	88.35
PF14662	193	CCDC155: Coiled-coil region of CCDC155	88.16
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	88.16
KOG0288	459	consensus WD40 repeat protein TipD [General functi	88.09
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	88.07
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	88.03
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	87.95
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	87.95
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.95
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	87.92
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	87.89
PRK02889	427	tolB translocation protein TolB; Provisional	87.86
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	87.77
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.69
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	87.58
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	87.55
PRK06231	205	F0F1 ATP synthase subunit B; Validated	87.54
KOG2751	447	consensus Beclin-like protein [Signal transduction	87.42
PF05335	188	DUF745: Protein of unknown function (DUF745); Inte	87.31
KOG1937	521	consensus Uncharacterized conserved protein [Funct	87.27
PF15233	134	SYCE1: Synaptonemal complex central element protei	87.17
KOG1103	561	consensus Predicted coiled-coil protein [Function	87.1
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	87.06
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	87.06
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	86.99
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	86.94
PRK03947	140	prefoldin subunit alpha; Reviewed	86.92
PF14282	106	FlxA: FlxA-like protein	86.84
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	86.83
KOG0288	459	consensus WD40 repeat protein TipD [General functi	86.83
KOG4552	272	consensus Vitamin-D-receptor interacting protein c	86.77
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	86.75
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.7
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	86.64
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.63
PRK01742	429	tolB translocation protein TolB; Provisional	86.54
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	86.53
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	86.33
PRK01742	429	tolB translocation protein TolB; Provisional	86.2
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	86.19
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.09
KOG1962	216	consensus B-cell receptor-associated protein and r	85.96
KOG0964	1200	consensus Structural maintenance of chromosome pro	85.85
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	85.72
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	85.71
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	85.7
PRK07352	174	F0F1 ATP synthase subunit B; Validated	85.5
PF14723	179	SSFA2_C: Sperm-specific antigen 2 C-terminus	85.48
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	85.44
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	85.41
KOG0964	1200	consensus Structural maintenance of chromosome pro	85.39
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	85.31
CHL00019	184	atpF ATP synthase CF0 B subunit	85.23
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	85.22
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	85.18
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	85.12
PF14282	106	FlxA: FlxA-like protein	85.1
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	84.94
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	84.88
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	84.85
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	84.57
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.52
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	84.43
KOG0933	1174	consensus Structural maintenance of chromosome pro	84.34
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	84.33
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	84.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	84.19
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	84.06
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	83.97
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	83.8
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	83.8
PRK05759	156	F0F1 ATP synthase subunit B; Validated	83.79
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	83.78
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	83.73
PLN00181	793	protein SPA1-RELATED; Provisional	83.68
PF02646	304	RmuC: RmuC family; InterPro: IPR003798 This protei	83.64
KOG3850	455	consensus Predicted membrane protein [Function unk	83.59
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	83.58
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	83.48
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	83.48
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	83.44
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	83.41
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	83.4
KOG1003	205	consensus Actin filament-coating protein tropomyos	83.35
PLN00033	398	photosystem II stability/assembly factor; Provisio	83.25
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	83.06
KOG2048	691	consensus WD40 repeat protein [General function pr	83.01
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	82.99
KOG3647	338	consensus Predicted coiled-coil protein [General f	82.99
KOG3990	305	consensus Uncharacterized conserved protein [Funct	82.94
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	82.93
PRK08475	167	F0F1 ATP synthase subunit B; Validated	82.84
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.74
PF15290	305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	82.67
smart00284	255	OLF Olfactomedin-like domains.	82.58
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	82.58
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	82.57
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	82.53
PTZ00421	493	coronin; Provisional	82.41
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	82.4
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	82.35
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	82.33
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	82.27
KOG0649	325	consensus WD40 repeat protein [General function pr	82.18
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	82.1
KOG4673	961	consensus Transcription factor TMF, TATA element m	82.1
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	82.09
KOG0772	641	consensus Uncharacterized conserved protein, conta	82.05
PRK15422	79	septal ring assembly protein ZapB; Provisional	82.01
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	81.95
PF02388	406	FemAB: FemAB family; InterPro: IPR003447 The femAB	81.86
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	81.75
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	81.48
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	81.41
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	81.38
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	81.35
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	81.29
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	81.26
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	81.24
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	81.14
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	81.08
PF05615	139	THOC7: Tho complex subunit 7; InterPro: IPR008501	80.96
KOG0979	1072	consensus Structural maintenance of chromosome pro	80.92
KOG1937	521	consensus Uncharacterized conserved protein [Funct	80.84
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	80.78
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	80.77
PF10205	102	KLRAQ: Predicted coiled-coil domain-containing pro	80.75
PF12761	195	End3: Actin cytoskeleton-regulatory complex protei	80.75
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	80.63
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	80.63
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	80.54
smart00284	255	OLF Olfactomedin-like domains.	80.43
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	80.38
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	80.37
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	80.28
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	80.26
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	80.24
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	80.1
PLN00033	398	photosystem II stability/assembly factor; Provisio	80.05

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=6.6e-45  Score=369.56  Aligned_cols=313  Identities=20%  Similarity=0.286  Sum_probs=257.4

Q ss_pred             CCeEeeCCC----CCeEEeccCCCCCCccccceEEEECCEEEEEcCCCC-C-ccCCceEEEECCCCceeEeeeccccccC
Q 010571            4 GSWHLELPY----DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-G-RFLSDVQVFDLRSLAWSNLRLETELDAD   77 (507)
Q Consensus         4 ~~~~~d~~~----~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~-~~~~~~~~~d~~t~~W~~~~~~~~~~~~   77 (507)
                      ++|.++|.+    ++|..+...+..|.||.+|+++++++.||+|||... . ...+++++||+.+++|..++.+..    
T Consensus       138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~----  213 (470)
T PLN02193        138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGD----  213 (470)
T ss_pred             EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCC----
Confidence            466777654    899999877778999999999999999999999753 2 344689999999999998766532    


Q ss_pred             ccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEE
Q 010571           78 KTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIF  157 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~  157 (507)
                              .|+..|.+|++++++++||+|||..... .++++++||+.+++|+.+.+.+..|.+|.+|++++++++||+|
T Consensus       214 --------~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~  284 (470)
T PLN02193        214 --------VPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVF  284 (470)
T ss_pred             --------CCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEE
Confidence                    1222467899999999999999987544 4789999999999999998555558999999999999999999


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeec
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK  237 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~  237 (507)
                      ||.+... ..+++++||+.+++|+.+++.+.+|.+|..|+++++.+ ++|++||.++. ..+++++||+.+++|+.+...
T Consensus       285 GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~  361 (470)
T PLN02193        285 GGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETF  361 (470)
T ss_pred             CCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCC-ccCceEEEECCCCEEEEeccC
Confidence            9997644 47899999999999999987777788999999998854 59999997643 468999999999999998776


Q ss_pred             CCCCCCCcceEEEEECCEEEEEeccCCC---------CCcceEEEEEcCcCeeEEeccCCC--CCCCCCCCCceEEEEEc
Q 010571          238 GDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKG--RNPLASEGLSVCSAIIE  306 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~~~~~~--~~p~~~~~~~~~~~~~~  306 (507)
                      +..|.+|..|++++++++|||+||....         ...+++++||+.+++|+.++.++.  ..|.+|..++++...+.
T Consensus       362 g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~  441 (470)
T PLN02193        362 GVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTID  441 (470)
T ss_pred             CCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEc
Confidence            7789999999999999999999997531         134789999999999999987653  34556655555555566


Q ss_pred             CceEEEEEcccC--CCcCCeEEEEECCC
Q 010571          307 GEHHLVAFGGYN--GKYNNEVFVMRLKP  332 (507)
Q Consensus       307 ~~~~l~v~GG~~--~~~~~~v~~~~~~~  332 (507)
                      +++.|++|||.+  +...+|+|+|++.+
T Consensus       442 ~~~~~~~fGG~~~~~~~~~D~~~~~~~~  469 (470)
T PLN02193        442 GKKGLVMHGGKAPTNDRFDDLFFYGIDS  469 (470)
T ss_pred             CCceEEEEcCCCCccccccceEEEecCC
Confidence            666799999996  45789999998753

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1.4e-43  Score=347.54  Aligned_cols=307  Identities=21%  Similarity=0.285  Sum_probs=244.4

Q ss_pred             CCCCCeEEeccC-CCCCCccccceEEEECCEEEEEcCCCC--CccCCceEEEECCCCceeEeeeccccccCccccCCccC
Q 010571           10 LPYDLWVTLPVS-GARPSPRYKHAAAVFDQKLYIVGGSRN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE   86 (507)
Q Consensus        10 ~~~~~W~~~~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      +....|.++... +.+|.||.+|+++++++.|||+||...  ....+++++||+.+++|..+++++.            .
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~------------~   71 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD------------V   71 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC------------C
Confidence            467889999763 347999999999999999999999753  3345789999999999999886542            1


Q ss_pred             CCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecC--CCCCCCcccceEEEECCEEEEEcCcCCCC
Q 010571           87 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSR  164 (507)
Q Consensus        87 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~l~~~GG~~~~~  164 (507)
                      +...+.+|++++++++||+|||...... .+++++||+.+++|..++..  ...|.+|.+|++++++++||+|||.+...
T Consensus        72 p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~  150 (341)
T PLN02153         72 PRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG  150 (341)
T ss_pred             CCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC
Confidence            1223558999999999999999865543 67899999999999998732  12388999999999999999999986432


Q ss_pred             -----CccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCC--------cCCCcEEEEECCCCcE
Q 010571          165 -----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--------IFFNDLHVLDLQTNEW  231 (507)
Q Consensus       165 -----~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~--------~~~~~i~~~d~~~~~W  231 (507)
                           ..++++++||+.+++|..++..+..|.+|.+|++++++ ++|||+||....        ..++++++||+.+++|
T Consensus       151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W  229 (341)
T PLN02153        151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ-GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW  229 (341)
T ss_pred             ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEEC-CeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence                 23578999999999999998776667899999988884 559999986421        2368899999999999


Q ss_pred             EeeeecCCCCCCCcceEEEEECCEEEEEeccCC---------CCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEE
Q 010571          232 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN---------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS  302 (507)
Q Consensus       232 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~---------~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~  302 (507)
                      +.+...+.+|.+|..|++++++++||||||...         ....+++|.||+.+++|+.+..... .|.++..+.++.
T Consensus       230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~-~~~pr~~~~~~~  308 (341)
T PLN02153        230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGE-PAMPRGWTAYTT  308 (341)
T ss_pred             EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCC-CCCCCccccccc
Confidence            998777788999999999999999999999632         1225699999999999999864322 234454544455


Q ss_pred             EEEcCceEEEEEcccCC--CcCCeEEEEECC
Q 010571          303 AIIEGEHHLVAFGGYNG--KYNNEVFVMRLK  331 (507)
Q Consensus       303 ~~~~~~~~l~v~GG~~~--~~~~~v~~~~~~  331 (507)
                      +.+.+++.||++||.++  ...+|+|+|+..
T Consensus       309 ~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~  339 (341)
T PLN02153        309 ATVYGKNGLLMHGGKLPTNERTDDLYFYAVN  339 (341)
T ss_pred             cccCCcceEEEEcCcCCCCccccceEEEecc
Confidence            56666668999999965  468999999763

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=4.6e-44  Score=311.14  Aligned_cols=293  Identities=27%  Similarity=0.473  Sum_probs=247.2

Q ss_pred             CeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCcc-----CCceEEEECCCCceeEeeeccccccCccccCCccCCC
Q 010571           14 LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRF-----LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVL   88 (507)
Q Consensus        14 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-----~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p   88 (507)
                      .|+.--..   -+.|..|+++.+|+.||-|||..++..     .-+|.++|..+.+|.++|+...  +..+.... +..|
T Consensus         3 ~WTVHLeG---GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~--ka~i~~~y-p~VP   76 (392)
T KOG4693|consen    3 TWTVHLEG---GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGIT--KATIESPY-PAVP   76 (392)
T ss_pred             eEEEEecC---CcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccc--cccccCCC-Cccc
Confidence            57655533   345999999999999999999776432     2369999999999999987432  22333322 4678


Q ss_pred             CCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC-CCCcc
Q 010571           89 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR-SRKLL  167 (507)
Q Consensus        89 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~-~~~~~  167 (507)
                      ..|++|+++.+++++|+|||.+......|.++.||+.++.|.+....|..|.+|.+|++|++++.+|||||+.. ..++.
T Consensus        77 yqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS  156 (392)
T KOG4693|consen   77 YQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFS  156 (392)
T ss_pred             hhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhh
Confidence            88999999999999999999999888889999999999999999999999999999999999999999999954 34578


Q ss_pred             CcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCC---------CcCCCcEEEEECCCCcEEeeeecC
Q 010571          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH---------SIFFNDLHVLDLQTNEWSQPEIKG  238 (507)
Q Consensus       168 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~---------~~~~~~i~~~d~~~~~W~~~~~~~  238 (507)
                      ++++.||+.|.+|+.+.++|.+|.-|..|++++++ +++|||||..+         ..+++.|..+|+.+..|......+
T Consensus       157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~  235 (392)
T KOG4693|consen  157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT  235 (392)
T ss_pred             ccceeEeccceeeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence            99999999999999999999999999999999995 67999999853         256778999999999999987777


Q ss_pred             CCCCCCcceEEEEECCEEEEEeccCCC--CCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcc
Q 010571          239 DLVTGRAGHAGITIDENWYIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG  316 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG  316 (507)
                      ..|..|.+|++.++++.||||||+++.  ..++|+|.||+.+..|+.|. ..+..|.+|.+.  |++++.+  .+|+|||
T Consensus       236 ~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~-~~Gk~P~aRRRq--C~~v~g~--kv~LFGG  310 (392)
T KOG4693|consen  236 MKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS-VRGKYPSARRRQ--CSVVSGG--KVYLFGG  310 (392)
T ss_pred             cCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee-ccCCCCCcccce--eEEEECC--EEEEecC
Confidence            889999999999999999999999875  34789999999999999875 455556666555  4545555  7999999


Q ss_pred             cC
Q 010571          317 YN  318 (507)
Q Consensus       317 ~~  318 (507)
                      ..
T Consensus       311 Ts  312 (392)
T KOG4693|consen  311 TS  312 (392)
T ss_pred             CC
Confidence            65

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=6.6e-40  Score=336.50  Aligned_cols=272  Identities=23%  Similarity=0.344  Sum_probs=239.3

Q ss_pred             EECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCC
Q 010571           35 VFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS  113 (507)
Q Consensus        35 ~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  113 (507)
                      ...+.||++||..+ ....+.+..||+.++.|..+..++.                +|..+++++++|+||++||.+...
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~----------------~r~~~~~~~~~~~lYv~GG~~~~~  345 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS----------------PRCRVGVAVLNGKLYVVGGYDSGS  345 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc----------------ccccccEEEECCEEEEEccccCCC
Confidence            35689999999986 7788999999999999999987754                899999999999999999999544


Q ss_pred             CCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          114 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       114 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                      ...+++++||+.+++|..++   +|+.+|.+++++++++.||++||.++.. .++++++||+.+++|..+.   +++.+|
T Consensus       346 ~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va---~m~~~r  418 (571)
T KOG4441|consen  346 DRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVA---PMLTRR  418 (571)
T ss_pred             cccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccC---CCCcce
Confidence            45889999999999999988   9999999999999999999999999554 5889999999999999997   677799


Q ss_pred             CCceEEEEcCcEEEEEeCCCCCc-CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEE
Q 010571          194 YDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       194 ~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~  272 (507)
                      ++|+++++ +++||++||.++.. +++.+.+|||.++.|+.+   ++|+.+|.+|+++++++.||++||+++......++
T Consensus       419 ~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE  494 (571)
T KOG4441|consen  419 SGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI---APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVE  494 (571)
T ss_pred             eeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeec---CCcccccccceEEEECCEEEEECCccCCCccceEE
Confidence            99999988 55699999998876 999999999999999996   78999999999999999999999998866677799


Q ss_pred             EEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCCCccc
Q 010571          273 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIF  341 (507)
Q Consensus       273 ~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~~~~~  341 (507)
                      .||+.+++|+.+++|+.    ++.+..  .++.+  +.||++||+++. ..+.+..||+.++.|.....+
T Consensus       495 ~ydp~~~~W~~v~~m~~----~rs~~g--~~~~~--~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~  556 (571)
T KOG4441|consen  495 RYDPETNQWTMVAPMTS----PRSAVG--VVVLG--GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEP  556 (571)
T ss_pred             EEcCCCCceeEcccCcc----cccccc--EEEEC--CEEEEEecccCccccceeEEcCCCCCceeeCCCc
Confidence            99999999999977743    333333  33343  489999998864 789999999999999987773

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=1.7e-39  Score=328.73  Aligned_cols=297  Identities=33%  Similarity=0.590  Sum_probs=260.9

Q ss_pred             cCCCCCCccccceEEEECCEEEEEcCCCCCccCCc--eEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeE
Q 010571           20 VSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV   97 (507)
Q Consensus        20 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~--~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~   97 (507)
                      ..+..|.+|++|+++.+++++|||||........+  +++||..+..|......+             ..|++|.+|+++
T Consensus        53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g-------------~~p~~r~g~~~~  119 (482)
T KOG0379|consen   53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG-------------DEPSPRYGHSLS  119 (482)
T ss_pred             cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC-------------CCCCcccceeEE
Confidence            46678999999999999999999999877666666  999999999999888775             447899999999


Q ss_pred             EECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571           98 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus        98 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      +++++||+|||........++++.||+.|++|..+.+.+.+|++|.+|+++++++++|||||.+......|++|+||+.+
T Consensus       120 ~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~  199 (482)
T KOG0379|consen  120 AVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLET  199 (482)
T ss_pred             EECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccc
Confidence            99999999999997555688999999999999999999999999999999999999999999988877899999999999


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC-CCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEE
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  256 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  256 (507)
                      .+|..+.+.|..|.||.+|+++++++. ++||||.. ++.+++|+|.||+.+..|..+...+.+|.+|++|+.++.++++
T Consensus       200 ~~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~  278 (482)
T KOG0379|consen  200 STWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHL  278 (482)
T ss_pred             ccceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEE
Confidence            999999999999999999999999766 66666665 7789999999999999999988889999999999999999999


Q ss_pred             EEEeccCCC--CCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccC--CCcCCeEEEEEC
Q 010571          257 YIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRL  330 (507)
Q Consensus       257 ~v~GG~~~~--~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~v~~~~~  330 (507)
                      +++||....  ..+.++|.|++.+..|..+.......|.++..+..+.+...+...+.++||..  ....++++.+..
T Consensus       279 ~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (482)
T KOG0379|consen  279 LLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQI  356 (482)
T ss_pred             EEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccc
Confidence            999998764  25889999999999999998877566788888888877666666777777733  345566665554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=2.2e-39  Score=332.61  Aligned_cols=252  Identities=28%  Similarity=0.418  Sum_probs=234.6

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEECCCCceeEeeeccccccCccccCC
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      +-+|||..+.|..+.   ++|.+|..++++++++.||++||.+ +...++.+++||+.+++|..+++|..          
T Consensus       303 ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~----------  369 (571)
T KOG4441|consen  303 VECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT----------  369 (571)
T ss_pred             eEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC----------
Confidence            449999999999999   7999999999999999999999999 67788999999999999999998865          


Q ss_pred             ccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCC
Q 010571           84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS  163 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~  163 (507)
                            +|..+++++++|.||++||.+.... .+++++|||.+++|..+.   +|+.+|+++++++++++||++||.+..
T Consensus       370 ------~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  370 ------KRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             ------ccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCC
Confidence                  8999999999999999999996555 889999999999999998   899999999999999999999999888


Q ss_pred             CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCC
Q 010571          164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTG  243 (507)
Q Consensus       164 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~  243 (507)
                      ..+.+++++|||.+++|+.++   +++.+|.+++++++ +++||++||.++...+..+.+||+.+++|+.+   .+++.+
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m~~~  512 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APMTSP  512 (571)
T ss_pred             ccccceEEEEcCCCCceeecC---CcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc---ccCccc
Confidence            767999999999999999998   78899999998888 55699999999877778899999999999997   678999


Q ss_pred             CcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          244 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       244 r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      |..++++++++.+|++||+++...++.+..||+.+++|+.+..
T Consensus       513 rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  513 RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             cccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence            9999999999999999999999889999999999999999876

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=4.7e-39  Score=332.01  Aligned_cols=252  Identities=12%  Similarity=0.151  Sum_probs=219.5

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCC-CCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .+|+|||.++.|..++   ++|.+|.+|+++++++.||++||.. +....+.+++||+.++.|..+++++          
T Consensus       273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~----------  339 (557)
T PHA02713        273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI----------  339 (557)
T ss_pred             CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc----------
Confidence            4699999999999998   7999999999999999999999975 3445788999999999999988775          


Q ss_pred             CccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC
Q 010571           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~  162 (507)
                            .+|.++++++++++||++||..... ..+++++|||.+++|..++   +||.+|.++++++++++||++||.+.
T Consensus       340 ------~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~  409 (557)
T PHA02713        340 ------KNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTE  409 (557)
T ss_pred             ------chhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCc
Confidence                  3899999999999999999986443 3678999999999999988   89999999999999999999999864


Q ss_pred             CC-----------------CccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc-CCCcEEEE
Q 010571          163 SR-----------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVL  224 (507)
Q Consensus       163 ~~-----------------~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~  224 (507)
                      ..                 ...+++++|||.+++|+.++   +++.+|..+++++++ ++||++||.++.. ..+.+++|
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~-~~IYv~GG~~~~~~~~~~ve~Y  485 (557)
T PHA02713        410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHK-DDIYVVCDIKDEKNVKTCIFRY  485 (557)
T ss_pred             ccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEEC-CEEEEEeCCCCCCccceeEEEe
Confidence            31                 12578999999999999987   688899999998885 5599999986543 33568999


Q ss_pred             ECCC-CcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCC
Q 010571          225 DLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       225 d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~  288 (507)
                      ||.+ ++|+.+   +++|.+|..+++++++++||++||.++.   ..+.+||+.+++|+.+.+..
T Consensus       486 dp~~~~~W~~~---~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~~~  544 (557)
T PHA02713        486 NTNTYNGWELI---TTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICHQH  544 (557)
T ss_pred             cCCCCCCeeEc---cccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhhhc
Confidence            9999 899986   6899999999999999999999998763   36889999999999887653

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=5.8e-38  Score=318.78  Aligned_cols=292  Identities=21%  Similarity=0.309  Sum_probs=234.9

Q ss_pred             ccceEEEECCEEEEEcCCCCCccCCc--eEEEECCC----CceeEeeeccccccCccccCCccCCCCCccceeeEEECCE
Q 010571           29 YKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRS----LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK  102 (507)
Q Consensus        29 ~~~~~~~~~~~lyv~GG~~~~~~~~~--~~~~d~~t----~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~  102 (507)
                      .+...+..+++|+.|+|..... ++.  ++.+++.+    ++|..+.++.             ..|.+|.+|++++++++
T Consensus       112 ~g~~f~~~~~~ivgf~G~~~~~-~~~ig~y~~~~~~~~~~~~W~~~~~~~-------------~~P~pR~~h~~~~~~~~  177 (470)
T PLN02193        112 PGVKFVLQGGKIVGFHGRSTDV-LHSLGAYISLPSTPKLLGKWIKVEQKG-------------EGPGLRCSHGIAQVGNK  177 (470)
T ss_pred             CCCEEEEcCCeEEEEeccCCCc-EEeeEEEEecCCChhhhceEEEcccCC-------------CCCCCccccEEEEECCE
Confidence            3455555689999999976543 444  45557655    7999987653             34779999999999999


Q ss_pred             EEEEcccCCCCC-CcceEEEEECCCCcEEEeecCCCCCC-CcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcE
Q 010571          103 LLILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW  180 (507)
Q Consensus       103 iyv~GG~~~~~~-~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W  180 (507)
                      ||++||...... ..+++++||+.+++|..+++.+.+|. +|.++++++++++||+|||.+... .++++++||+.+++|
T Consensus       178 iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W  256 (470)
T PLN02193        178 IYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEW  256 (470)
T ss_pred             EEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEE
Confidence            999999854322 34679999999999999876666665 467889999999999999987543 579999999999999


Q ss_pred             EEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEe
Q 010571          181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVG  260 (507)
Q Consensus       181 ~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~G  260 (507)
                      +.+.+.+..|.+|..|+++++ +++||||||.+....+++++.||+.+++|+.+...+.+|.+|..|+++++++++|++|
T Consensus       257 ~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviG  335 (470)
T PLN02193        257 KLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVY  335 (470)
T ss_pred             EEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEE
Confidence            999876666889999999887 5569999999877788999999999999999876566788999999999999999999


Q ss_pred             ccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC----------CcCCeEEEEEC
Q 010571          261 GGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRL  330 (507)
Q Consensus       261 G~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~~~~  330 (507)
                      |.++. ..+++++||+.+++|++++.+.. .|.+|..++++  ++.  +.|||+||...          ...+++|+||+
T Consensus       336 G~~g~-~~~dv~~yD~~t~~W~~~~~~g~-~P~~R~~~~~~--~~~--~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~  409 (470)
T PLN02193        336 GFNGC-EVDDVHYYDPVQDKWTQVETFGV-RPSERSVFASA--AVG--KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT  409 (470)
T ss_pred             CCCCC-ccCceEEEECCCCEEEEeccCCC-CCCCcceeEEE--EEC--CEEEEECCccCCccccccCccceeccEEEEEc
Confidence            97654 36899999999999999876532 35566665543  444  48999999752          24579999999


Q ss_pred             CCCCCCCCcccC
Q 010571          331 KPRDIPRPKIFQ  342 (507)
Q Consensus       331 ~~~~w~~~~~~~  342 (507)
                      .++.|+.+..+.
T Consensus       410 ~t~~W~~~~~~~  421 (470)
T PLN02193        410 ETLQWERLDKFG  421 (470)
T ss_pred             CcCEEEEcccCC
Confidence            999999876543

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=1e-37  Score=306.07  Aligned_cols=263  Identities=21%  Similarity=0.291  Sum_probs=211.2

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCc-cccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSP-RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      +++|+||+.++.|..++..+..|.+ +.+|++++++++||+|||......++++++||+.+++|..++.+..        
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~--------  121 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDE--------  121 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCC--------
Confidence            6899999999999998854434443 4589999999999999998777678899999999999999886542        


Q ss_pred             CCccCCCCCccceeeEEECCEEEEEcccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEE
Q 010571           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLII  156 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~  156 (507)
                         ...|.+|.+|++++.+++|||+||......     ..+++++||+.+++|..++..+.+|.+|.++++++++++||+
T Consensus       122 ---~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv  198 (341)
T PLN02153        122 ---EGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWV  198 (341)
T ss_pred             ---CCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEE
Confidence               234678999999999999999999864321     246899999999999999866556789999999999999999


Q ss_pred             EcCcCCC-------CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC---------CCcCCCc
Q 010571          157 FGGEDRS-------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFND  220 (507)
Q Consensus       157 ~GG~~~~-------~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~---------~~~~~~~  220 (507)
                      +||.+..       ....+++++||+.+++|+.+...+.+|.+|..|++++++ ++||||||..         .....|+
T Consensus       199 ~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~n~  277 (341)
T PLN02153        199 VYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNE  277 (341)
T ss_pred             EeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEEC-CEEEEECcccCCcccccccccccccc
Confidence            9997421       123678999999999999999888889999999999885 5699999973         2245689


Q ss_pred             EEEEECCCCcEEeeeecCCCCCC--CcceEEEEE--CCEEEEEeccCCC-CCcceEEEEEcC
Q 010571          221 LHVLDLQTNEWSQPEIKGDLVTG--RAGHAGITI--DENWYIVGGGDNN-NGCQETIVLNMT  277 (507)
Q Consensus       221 i~~~d~~~~~W~~~~~~~~~p~~--r~~~~~~~~--~~~l~v~GG~~~~-~~~~d~~~~d~~  277 (507)
                      +++||+.+++|+.+...+..|.|  |..|+++.+  ++.|||+||.+.. ..++|+|.|+..
T Consensus       278 v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~  339 (341)
T PLN02153        278 GYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN  339 (341)
T ss_pred             EEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence            99999999999998643333444  444444443  3489999998664 567899999754

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=277.28  Aligned_cols=247  Identities=25%  Similarity=0.442  Sum_probs=218.1

Q ss_pred             CCeEeeCCCCCeEEeccC-------C---CCCCccccceEEEECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeecc
Q 010571            4 GSWHLELPYDLWVTLPVS-------G---ARPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLET   72 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~-------~---~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~   72 (507)
                      |+=+||..+-+|+++|..       +   -.|-.|+||+++...+++|+|||.+. ....|.++.|||.++.|.+....+
T Consensus        45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G  124 (392)
T KOG4693|consen   45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG  124 (392)
T ss_pred             eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee
Confidence            566788889999998751       1   12456999999999999999999887 456788999999999999877765


Q ss_pred             ccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCC-CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC
Q 010571           73 ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG  151 (507)
Q Consensus        73 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~  151 (507)
                                   ..|.+|.+|++|++++.+|||||+..... ..++++++|+.|.+|+.+.+.|.+|.-|..|++++++
T Consensus       125 -------------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~  191 (392)
T KOG4693|consen  125 -------------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID  191 (392)
T ss_pred             -------------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc
Confidence                         55889999999999999999999977655 6789999999999999999999999999999999999


Q ss_pred             CEEEEEcCcCCC--------CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCC--cCCCcE
Q 010571          152 SRLIIFGGEDRS--------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS--IFFNDL  221 (507)
Q Consensus       152 ~~l~~~GG~~~~--------~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~--~~~~~i  221 (507)
                      +.+|||||+.+.        ..+++.+..||+.|..|...+..+-.|.+|..|++.++ ++.+|||||+.+.  .-.||+
T Consensus       192 ~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY-ng~~Y~FGGYng~ln~HfndL  270 (392)
T KOG4693|consen  192 GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY-NGKMYMFGGYNGTLNVHFNDL  270 (392)
T ss_pred             ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE-cceEEEecccchhhhhhhcce
Confidence            999999998542        24678899999999999999988888999999999988 5669999999764  567999


Q ss_pred             EEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCC
Q 010571          222 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN  264 (507)
Q Consensus       222 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  264 (507)
                      |+||+.+..|..+...|..|.+|..+++++.++++|+|||...
T Consensus       271 y~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  271 YCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             eecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence            9999999999999999999999999999999999999999653

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=9.5e-37  Score=314.88  Aligned_cols=264  Identities=12%  Similarity=0.191  Sum_probs=216.6

Q ss_pred             EEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcce
Q 010571           39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI  118 (507)
Q Consensus        39 ~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  118 (507)
                      .|++.||.. ......+++||+.+++|..+++++                .+|.+|++++++++||++||........++
T Consensus       259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~mp----------------~~r~~~~~a~l~~~IYviGG~~~~~~~~~~  321 (557)
T PHA02713        259 CLVCHDTKY-NVCNPCILVYNINTMEYSVISTIP----------------NHIINYASAIVDNEIIIAGGYNFNNPSLNK  321 (557)
T ss_pred             EEEEecCcc-ccCCCCEEEEeCCCCeEEECCCCC----------------ccccceEEEEECCEEEEEcCCCCCCCccce
Confidence            355555521 223357899999999999988765                378899999999999999997644344678


Q ss_pred             EEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceE
Q 010571          119 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA  198 (507)
Q Consensus       119 ~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~  198 (507)
                      +++||+.+++|..++   +||.+|..+++++++++||++||.++.. ..+++++||+.+++|+.++   ++|.+|..+++
T Consensus       322 v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~  394 (557)
T PHA02713        322 VYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALSSYGM  394 (557)
T ss_pred             EEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccccccE
Confidence            999999999999988   8999999999999999999999986543 4788999999999999987   78999999998


Q ss_pred             EEEcCcEEEEEeCCCCC------------------cCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEe
Q 010571          199 ALHANRYLIVFGGCSHS------------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVG  260 (507)
Q Consensus       199 ~~~~~~~l~i~GG~~~~------------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~G  260 (507)
                      +++ +++||++||.++.                  ..++.+++|||.+++|+.+   ++++.+|..+++++++++|||+|
T Consensus       395 ~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r~~~~~~~~~~~IYv~G  470 (557)
T PHA02713        395 CVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGTIRPGVVSHKDDIYVVC  470 (557)
T ss_pred             EEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCcccccCcEEEECCEEEEEe
Confidence            888 5669999998642                  1357899999999999986   67899999999999999999999


Q ss_pred             ccCCCCCc-ceEEEEEcCc-CeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCC
Q 010571          261 GGDNNNGC-QETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP  338 (507)
Q Consensus       261 G~~~~~~~-~d~~~~d~~~-~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~  338 (507)
                      |.++.... +.+++||+.+ ++|+.+++|+.    +|.++  ..+++++  .||++||+++  ...+.+||+.+++|+..
T Consensus       471 G~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~----~r~~~--~~~~~~~--~iyv~Gg~~~--~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        471 DIKDEKNVKTCIFRYNTNTYNGWELITTTES----RLSAL--HTILHDN--TIMMLHCYES--YMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             CCCCCCccceeEEEecCCCCCCeeEccccCc----ccccc--eeEEECC--EEEEEeeecc--eeehhhcCcccccccch
Confidence            98654333 4578999999 89999988843    34443  3444544  8999999887  35789999999999975


Q ss_pred             cc
Q 010571          339 KI  340 (507)
Q Consensus       339 ~~  340 (507)
                      ..
T Consensus       541 ~~  542 (557)
T PHA02713        541 CH  542 (557)
T ss_pred             hh
Confidence            54

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=308.89  Aligned_cols=252  Identities=19%  Similarity=0.299  Sum_probs=214.8

Q ss_pred             EeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCC-ccCCceEEEECCCCceeEeeeccccccCccccCCcc
Q 010571            7 HLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL   85 (507)
Q Consensus         7 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~   85 (507)
                      +|++..++|..++   ..| .+..|+++++++.||++||.... ...+++++||+.+++|..++.++             
T Consensus       268 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~-------------  330 (534)
T PHA03098        268 TNYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI-------------  330 (534)
T ss_pred             ecchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC-------------
Confidence            5778888898876   333 34567889999999999998653 45678999999999998887654             


Q ss_pred             CCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCC
Q 010571           86 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK  165 (507)
Q Consensus        86 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~  165 (507)
                         .+|.+|++++++++||++||..... ..+++++||+.+++|+..+   ++|.+|.+++++.++++||++||......
T Consensus       331 ---~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~  403 (534)
T PHA03098        331 ---YPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDE  403 (534)
T ss_pred             ---cccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCc
Confidence               4899999999999999999987433 4778999999999999987   89999999999999999999999865555


Q ss_pred             ccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc---CCCcEEEEECCCCcEEeeeecCCCCC
Q 010571          166 LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVT  242 (507)
Q Consensus       166 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~  242 (507)
                      .++++++||+.+++|+.+.   ++|.+|.+|+++.+ +++|||+||.....   ..+.+++||+.+++|+.+   +++|.
T Consensus       404 ~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~  476 (534)
T PHA03098        404 LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNF  476 (534)
T ss_pred             ccceEEEEeCCCCeeeecC---CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCc
Confidence            6789999999999999986   67889999998887 55699999986432   356799999999999997   56788


Q ss_pred             CCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCC
Q 010571          243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  289 (507)
Q Consensus       243 ~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~  289 (507)
                      +|..|++++++++|||+||.+.....+++++||+.+++|+.++.+|.
T Consensus       477 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        477 PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            89999999999999999998766657889999999999999877643

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1e-34  Score=285.97  Aligned_cols=272  Identities=18%  Similarity=0.182  Sum_probs=206.3

Q ss_pred             CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEC--CCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC
Q 010571           23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL--RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG  100 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~--~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~  100 (507)
                      ++|.+|..+++|++++.|||+||..    .+.+++||+  .+++|..++.++.               .+|..|++++++
T Consensus         3 ~lp~~~~~~~~~~~~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~l~~~p~---------------~~R~~~~~~~~~   63 (346)
T TIGR03547         3 DLPVGFKNGTGAIIGDKVYVGLGSA----GTSWYKLDLKKPSKGWQKIADFPG---------------GPRNQAVAAAID   63 (346)
T ss_pred             CCCccccCceEEEECCEEEEEcccc----CCeeEEEECCCCCCCceECCCCCC---------------CCcccceEEEEC
Confidence            5889999999989999999999964    257899996  5788999887642               279999999999


Q ss_pred             CEEEEEcccCCCC-----CCcceEEEEECCCCcEEEeecCCCCCCCcccceEE-EECCEEEEEcCcCCCC----------
Q 010571          101 TKLLILGGHYKKS-----SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFGGEDRSR----------  164 (507)
Q Consensus       101 ~~iyv~GG~~~~~-----~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~l~~~GG~~~~~----------  164 (507)
                      ++||++||.....     ..++++++||+.+++|+.+..  .+|.+|.+++++ +++++||++||.+...          
T Consensus        64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~  141 (346)
T TIGR03547        64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSA  141 (346)
T ss_pred             CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhh
Confidence            9999999986432     136789999999999999862  467777777776 6899999999986320          


Q ss_pred             -----------------------CccCcEEEEEcCCCcEEEeecCCCCCC-CCCCceEEEEcCcEEEEEeCCCCCc-CCC
Q 010571          165 -----------------------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSI-FFN  219 (507)
Q Consensus       165 -----------------------~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~i~GG~~~~~-~~~  219 (507)
                                             ...+++++||+.+++|+.+.   ++|. +|..++++.+ +++|||+||..... ...
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~  217 (346)
T TIGR03547       142 ADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTA  217 (346)
T ss_pred             cCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccch
Confidence                                   12478999999999999986   5664 6788877777 55699999985432 335


Q ss_pred             cEEEEE--CCCCcEEeeeecCCCCCCC-------cceEEEEECCEEEEEeccCCCC-----------------CcceEEE
Q 010571          220 DLHVLD--LQTNEWSQPEIKGDLVTGR-------AGHAGITIDENWYIVGGGDNNN-----------------GCQETIV  273 (507)
Q Consensus       220 ~i~~~d--~~~~~W~~~~~~~~~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~d~~~  273 (507)
                      +++.|+  +.++.|..+   .++|.+|       .+|++++++++|||+||.+...                 ....+.+
T Consensus       218 ~~~~y~~~~~~~~W~~~---~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  294 (346)
T TIGR03547       218 EVKQYLFTGGKLEWNKL---PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEV  294 (346)
T ss_pred             heEEEEecCCCceeeec---CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeE
Confidence            566665  467799986   4555554       4566788999999999975211                 1235789


Q ss_pred             EEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC--CcCCeEEEEEC
Q 010571          274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRL  330 (507)
Q Consensus       274 ~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~~~~  330 (507)
                      ||+.+++|+.++.+|.    ++..+  +++++++  .|||+||.+.  ...++|+.+.+
T Consensus       295 yd~~~~~W~~~~~lp~----~~~~~--~~~~~~~--~iyv~GG~~~~~~~~~~v~~~~~  345 (346)
T TIGR03547       295 YALDNGKWSKVGKLPQ----GLAYG--VSVSWNN--GVLLIGGENSGGKAVTDVYLLSW  345 (346)
T ss_pred             EEecCCcccccCCCCC----Cceee--EEEEcCC--EEEEEeccCCCCCEeeeEEEEEe
Confidence            9999999999987743    33332  3334444  8999999873  46788887653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=2.5e-35  Score=271.46  Aligned_cols=247  Identities=23%  Similarity=0.397  Sum_probs=212.0

Q ss_pred             CCCCccccceEEEE--CCEEEEEcCC--CC--CccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceee
Q 010571           23 ARPSPRYKHAAAVF--DQKLYIVGGS--RN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCM   96 (507)
Q Consensus        23 ~~p~~r~~~~~~~~--~~~lyv~GG~--~~--~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~   96 (507)
                      +.|.||...+++..  .+.|++|||.  ++  ....+++|.||..+++|+.+..              +++|+||+.|.+
T Consensus        62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s--------------pn~P~pRsshq~  127 (521)
T KOG1230|consen   62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS--------------PNAPPPRSSHQA  127 (521)
T ss_pred             CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc--------------CCCcCCCcccee
Confidence            56889999988776  4689999993  22  3456899999999999999876              366889999999


Q ss_pred             EEEC-CEEEEEcccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCC---CCcc
Q 010571           97 VKWG-TKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS---RKLL  167 (507)
Q Consensus        97 ~~~~-~~iyv~GG~~~~~~-----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~---~~~~  167 (507)
                      |++- |.+|||||.....+     .+.++|+||+.+++|+++...| .|.+|++|.+++..++|++|||+.+.   ..+.
T Consensus       128 va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Yy  206 (521)
T KOG1230|consen  128 VAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYY  206 (521)
T ss_pred             EEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEe
Confidence            9985 89999999754432     4679999999999999998765 89999999999999999999998443   3479


Q ss_pred             CcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC---------CCcCCCcEEEEECCC-----CcEEe
Q 010571          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQT-----NEWSQ  233 (507)
Q Consensus       168 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~---------~~~~~~~i~~~d~~~-----~~W~~  233 (507)
                      ||+|+||++|.+|+.+.+.|..|.||++|.+.+..++.|||.||++         .+..++|+|.+++..     -.|..
T Consensus       207 NDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~k  286 (521)
T KOG1230|consen  207 NDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTK  286 (521)
T ss_pred             eeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEee
Confidence            9999999999999999998888999999999999777799999985         346788999999988     57999


Q ss_pred             eeecCCCCCCCcceEEEEE-CCEEEEEeccCCC---------CCcceEEEEEcCcCeeEEe
Q 010571          234 PEIKGDLVTGRAGHAGITI-DENWYIVGGGDNN---------NGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       234 ~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~  284 (507)
                      +...+..|.||+++++++. +++.+.|||...-         ..+||+|.||+..++|+..
T Consensus       287 vkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  287 VKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             ccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            9988999999999999888 4589999997441         1268999999999999975

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=5.3e-34  Score=277.88  Aligned_cols=263  Identities=18%  Similarity=0.229  Sum_probs=198.5

Q ss_pred             CccccceEEEECCEEEEEcCCCCC----------ccCCceEEEECCC--CceeEeeeccccccCccccCCccCCCCCccc
Q 010571           26 SPRYKHAAAVFDQKLYIVGGSRNG----------RFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSD   93 (507)
Q Consensus        26 ~~r~~~~~~~~~~~lyv~GG~~~~----------~~~~~~~~~d~~t--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~   93 (507)
                      ..+.++.++++++.|||+||.+..          ...+++++|+...  .+|..++.+                |.+|..
T Consensus         2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l----------------p~~r~~   65 (323)
T TIGR03548         2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL----------------PYEAAY   65 (323)
T ss_pred             CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC----------------Cccccc
Confidence            457889999999999999997543          2446788886333  368887755                447888


Q ss_pred             eeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEE-EeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEE
Q 010571           94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        94 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~  172 (507)
                      +++++++++||++||...... .++++.||+.+++|. ......++|.+|..+++++++++||++||.... ...+++++
T Consensus        66 ~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~  143 (323)
T TIGR03548        66 GASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYL  143 (323)
T ss_pred             eEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEE
Confidence            888999999999999875443 678999999999983 112223899999999999999999999998543 34789999


Q ss_pred             EEcCCCcEEEeecCCCCC-CCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecC--CCCCCCcceEE
Q 010571          173 LDLETMTWDAVEVTQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG--DLVTGRAGHAG  249 (507)
Q Consensus       173 ~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~--~~p~~r~~~~~  249 (507)
                      ||+.+++|+.++   ++| .+|..|+++++ +++||||||.+.. ..+++++||+.+++|+.+....  ..|.++..+++
T Consensus       144 yd~~~~~W~~~~---~~p~~~r~~~~~~~~-~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~  218 (323)
T TIGR03548       144 FNLETQEWFELP---DFPGEPRVQPVCVKL-QNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS  218 (323)
T ss_pred             EcCCCCCeeECC---CCCCCCCCcceEEEE-CCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence            999999999987   344 36888877777 5569999998643 3467899999999999975322  23444445555


Q ss_pred             EEE-CCEEEEEeccCCCC--------------------------------CcceEEEEEcCcCeeEEeccCCCCCCCCCC
Q 010571          250 ITI-DENWYIVGGGDNNN--------------------------------GCQETIVLNMTKLAWSILTSVKGRNPLASE  296 (507)
Q Consensus       250 ~~~-~~~l~v~GG~~~~~--------------------------------~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~  296 (507)
                      +++ +++|||+||.+...                                ..+++++||+.+++|+.++.++.   .+|.
T Consensus       219 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~~r~  295 (323)
T TIGR03548       219 IKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF---FARC  295 (323)
T ss_pred             EEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc---cccC
Confidence            544 68999999976321                                12579999999999999886542   2455


Q ss_pred             CCceEEEEEcCceEEEEEcccC
Q 010571          297 GLSVCSAIIEGEHHLVAFGGYN  318 (507)
Q Consensus       297 ~~~~~~~~~~~~~~l~v~GG~~  318 (507)
                      +++++  .+++  .||++||..
T Consensus       296 ~~~~~--~~~~--~iyv~GG~~  313 (323)
T TIGR03548       296 GAALL--LTGN--NIFSINGEL  313 (323)
T ss_pred             chheE--EECC--EEEEEeccc
Confidence            55443  4444  799999975

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=5.4e-35  Score=275.40  Aligned_cols=301  Identities=26%  Similarity=0.453  Sum_probs=246.6

Q ss_pred             CCCeEEecc-CCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCC
Q 010571           12 YDLWVTLPV-SGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP   90 (507)
Q Consensus        12 ~~~W~~~~~-~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~   90 (507)
                      --+|.++.. .|+.|.||.||-++++...|.+|||-+.+ ..+.+.+||..+++|..-..-+             ..|++
T Consensus        16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrG-------------DiPpg   81 (830)
T KOG4152|consen   16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRG-------------DIPPG   81 (830)
T ss_pred             ccceEEEecccCCCCCccccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcC-------------CCCCc
Confidence            447887755 67889999999999999999999996655 4678999999999998766654             56899


Q ss_pred             ccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeec----CCCCCCCcccceEEEECCEEEEEcCcCCC---
Q 010571           91 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET----SGKVPVARGGHSVTLVGSRLIIFGGEDRS---  163 (507)
Q Consensus        91 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~----~g~~p~~r~~~~~~~~~~~l~~~GG~~~~---  163 (507)
                      .+.|.++..+.+||+|||+..-..+.|++|.+-...-.|+.+.+    .|.+|.+|-+|+...++++.|+|||...+   
T Consensus        82 cAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseD  161 (830)
T KOG4152|consen   82 CAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSED  161 (830)
T ss_pred             hhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccC
Confidence            99999999999999999999888889998888777778887754    57899999999999999999999997322   


Q ss_pred             -----CCccCcEEEEEcCCC----cEEEeecCCCCCCCCCCceEEEEc-----CcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          164 -----RKLLNDVHFLDLETM----TWDAVEVTQTPPAPRYDHSAALHA-----NRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       164 -----~~~~~~~~~~d~~t~----~W~~~~~~g~~p~~r~~~~~~~~~-----~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                           ..++||+|.+++.-+    .|..+...|..|.+|..|+++++.     ..++|||||..+ ..+.|+|.+|+.+.
T Consensus       162 pknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl  240 (830)
T KOG4152|consen  162 PKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTL  240 (830)
T ss_pred             cccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEeccee
Confidence                 247899999998743    599999999999999999999982     246999999865 56799999999999


Q ss_pred             cEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC------C--------CcceEEEEEcCcCeeEEecc--CCC-CCC
Q 010571          230 EWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN------N--------GCQETIVLNMTKLAWSILTS--VKG-RNP  292 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~------~--------~~~d~~~~d~~~~~W~~~~~--~~~-~~p  292 (507)
                      +|.+++..|..|.||+-|++..|+++||||||+-..      .        ..+.+-.+|+.+..|..+-.  ... .+|
T Consensus       241 ~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiP  320 (830)
T KOG4152|consen  241 TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIP  320 (830)
T ss_pred             ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccc
Confidence            999999999999999999999999999999997311      0        13456688999999998632  122 246


Q ss_pred             CCCCCCceEEEEEcCceEEEEEcccCCC--------cCCeEEEEECC
Q 010571          293 LASEGLSVCSAIIEGEHHLVAFGGYNGK--------YNNEVFVMRLK  331 (507)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~v~~~~~~  331 (507)
                      ++|.||..++  +.  .+||+..|.++.        ...|+|.+|..
T Consensus       321 R~RAGHCAvA--ig--tRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe  363 (830)
T KOG4152|consen  321 RARAGHCAVA--IG--TRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE  363 (830)
T ss_pred             cccccceeEE--ec--cEEEEEeccchhhHhhccccchhhhhhhccc
Confidence            6666665444  44  489999998753        35677777753

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=100.00  E-value=1.5e-34  Score=292.65  Aligned_cols=252  Identities=31%  Similarity=0.526  Sum_probs=224.0

Q ss_pred             cCCCCCccceeeEEECCEEEEEcccCCCCCCcc-eEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCC
Q 010571           85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS  163 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~  163 (507)
                      ...|.+|.+|+++.+++++|||||......... ++++||..+..|.....+|..|.+|.+|+++.++++||+|||.+..
T Consensus        55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~  134 (482)
T KOG0379|consen   55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK  134 (482)
T ss_pred             CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence            356789999999999999999999887766333 6999999999999999999999999999999999999999999865


Q ss_pred             CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc-CCCcEEEEECCCCcEEeeeecCCCCC
Q 010571          164 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVT  242 (507)
Q Consensus       164 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~  242 (507)
                      ....+++++||+.|.+|..+.+.+.+|++|.+|++++++ +++|||||.+... .+|++|+||+.+.+|.++.+.++.|.
T Consensus       135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~  213 (482)
T KOG0379|consen  135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS  213 (482)
T ss_pred             CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence            556899999999999999999999999999999999996 6799999998776 89999999999999999999999999


Q ss_pred             CCcceEEEEECCEEEEEeccC-CCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-
Q 010571          243 GRAGHAGITIDENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-  320 (507)
Q Consensus       243 ~r~~~~~~~~~~~l~v~GG~~-~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-  320 (507)
                      ||.+|++++++++++||||.+ ++..++|+|.||+.+..|..+ ...+..|.+|.+|+.+..    +..++++||.... 
T Consensus       214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~-~~~g~~p~~R~~h~~~~~----~~~~~l~gG~~~~~  288 (482)
T KOG0379|consen  214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL-PTGGDLPSPRSGHSLTVS----GDHLLLFGGGTDPK  288 (482)
T ss_pred             CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeec-cccCCCCCCcceeeeEEE----CCEEEEEcCCcccc
Confidence            999999999999999999988 666789999999999999954 445566888888876632    4478888988763 


Q ss_pred             --cCCeEEEEECCCCCCCCCcccC
Q 010571          321 --YNNEVFVMRLKPRDIPRPKIFQ  342 (507)
Q Consensus       321 --~~~~v~~~~~~~~~w~~~~~~~  342 (507)
                        ...++|.|++.+..|.......
T Consensus       289 ~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  289 QEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             cccccccccccccccceeeeeccc
Confidence              6899999999999999877655

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=6.1e-34  Score=282.36  Aligned_cols=284  Identities=18%  Similarity=0.222  Sum_probs=211.9

Q ss_pred             CeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECC--CCceeEeeeccccccCccccCCccCCCCCc
Q 010571           14 LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPM   91 (507)
Q Consensus        14 ~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~--t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r   91 (507)
                      .++.++   ++|.||..+++++++++|||+||...    +.+++||+.  ++.|..++.++.               .+|
T Consensus        18 ~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~---------------~~r   75 (376)
T PRK14131         18 NAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPG---------------GPR   75 (376)
T ss_pred             ecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCC---------------CCc
Confidence            356677   78999998899999999999999643    458899986  478998876542               379


Q ss_pred             cceeeEEECCEEEEEcccCCC-----CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE-ECCEEEEEcCcCCCC-
Q 010571           92 SDHCMVKWGTKLLILGGHYKK-----SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSR-  164 (507)
Q Consensus        92 ~~~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~l~~~GG~~~~~-  164 (507)
                      .+|++++++++||++||....     ....+++++||+.+++|..++.  .+|.++.+|++++ .+++||++||.+... 
T Consensus        76 ~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~  153 (376)
T PRK14131         76 EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIF  153 (376)
T ss_pred             ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHH
Confidence            999999999999999998641     1235789999999999999873  3577778888777 799999999975310 


Q ss_pred             --------------------------------CccCcEEEEEcCCCcEEEeecCCCCCC-CCCCceEEEEcCcEEEEEeC
Q 010571          165 --------------------------------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGG  211 (507)
Q Consensus       165 --------------------------------~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~i~GG  211 (507)
                                                      ...+++++||+.+++|+.+.   ++|. +|..|+++.+ +++|||+||
T Consensus       154 ~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~-~~~iYv~GG  229 (376)
T PRK14131        154 DGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIK-GNKLWLING  229 (376)
T ss_pred             HHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEE-CCEEEEEee
Confidence                                            12478999999999999876   5664 6777777776 566999999


Q ss_pred             CCCC-cCCCcEEE--EECCCCcEEeeeecCCCCCCCc--------ceEEEEECCEEEEEeccCCCC--------------
Q 010571          212 CSHS-IFFNDLHV--LDLQTNEWSQPEIKGDLVTGRA--------GHAGITIDENWYIVGGGDNNN--------------  266 (507)
Q Consensus       212 ~~~~-~~~~~i~~--~d~~~~~W~~~~~~~~~p~~r~--------~~~~~~~~~~l~v~GG~~~~~--------------  266 (507)
                      .... ...++++.  ||+.+++|..+   .++|.+|.        .+.+++++++|||+||.+...              
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~  306 (376)
T PRK14131        230 EIKPGLRTDAVKQGKFTGNNLKWQKL---PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE  306 (376)
T ss_pred             eECCCcCChhheEEEecCCCcceeec---CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence            7433 33455554  56788999987   45665553        233567899999999965321              


Q ss_pred             Cc---ceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC--CcCCeEEEEECCCCCCC
Q 010571          267 GC---QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRDIP  336 (507)
Q Consensus       267 ~~---~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~~~~~~~~w~  336 (507)
                      ..   ..+.+||+.+++|+.++.+|.    ++.++  .++++++  .|||+||...  ...++|++|++..+.+.
T Consensus       307 ~~~~~~~~e~yd~~~~~W~~~~~lp~----~r~~~--~av~~~~--~iyv~GG~~~~~~~~~~v~~~~~~~~~~~  373 (376)
T PRK14131        307 GLKKSWSDEIYALVNGKWQKVGELPQ----GLAYG--VSVSWNN--GVLLIGGETAGGKAVSDVTLLSWDGKKLT  373 (376)
T ss_pred             CCcceeehheEEecCCcccccCcCCC----Cccce--EEEEeCC--EEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence            11   246789999999999887743    44444  3344554  7999999753  46889999998765443

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=5.5e-34  Score=297.12  Aligned_cols=267  Identities=21%  Similarity=0.243  Sum_probs=215.8

Q ss_pred             CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcc
Q 010571           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM  117 (507)
Q Consensus        38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  117 (507)
                      ..+++.||..  .....+..|++.+.+|..++..+                 .+..|++++++++||++||........+
T Consensus       251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~lyv~GG~~~~~~~~~  311 (534)
T PHA03098        251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDIH-----------------YVYCFGSVVLNNVIYFIGGMNKNNLSVN  311 (534)
T ss_pred             cceEeecccc--hhhceeeecchhhhhcccccCcc-----------------ccccceEEEECCEEEEECCCcCCCCeec
Confidence            4455656644  22345667888888998876432                 3455789999999999999976655567


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCce
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  197 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~  197 (507)
                      +++.||+.+++|..++   +||.+|.+++++.++++||++||.+.. ...+++++||+.+++|+.++   ++|.+|.+|+
T Consensus       312 ~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~  384 (534)
T PHA03098        312 SVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPC  384 (534)
T ss_pred             cEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccce
Confidence            8999999999999887   889999999999999999999998743 35789999999999999886   6788999999


Q ss_pred             EEEEcCcEEEEEeCCCC-CcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCC---cceEEE
Q 010571          198 AALHANRYLIVFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---CQETIV  273 (507)
Q Consensus       198 ~~~~~~~~l~i~GG~~~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---~~d~~~  273 (507)
                      ++.+ +++||++||... ...++++++||+.+++|+.+   .++|.+|.+|++++++++|||+||.+....   .+.+++
T Consensus       385 ~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  460 (534)
T PHA03098        385 VVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKG---SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVES  460 (534)
T ss_pred             EEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeeec---CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEE
Confidence            9887 556999999753 34578999999999999986   568899999999999999999999764432   567999


Q ss_pred             EEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCCCcccC
Q 010571          274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQ  342 (507)
Q Consensus       274 ~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~~~~~~  342 (507)
                      ||+.+++|+.++.++    .++.+++++  +++  +.|||+||.++. ..++++.||+.++.|...+.+|
T Consensus       461 yd~~~~~W~~~~~~~----~~r~~~~~~--~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  522 (534)
T PHA03098        461 YNPVTNKWTELSSLN----FPRINASLC--IFN--NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP  522 (534)
T ss_pred             ecCCCCceeeCCCCC----cccccceEE--EEC--CEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence            999999999988763    345455443  343  479999998754 3789999999999998776543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=2.1e-33  Score=273.67  Aligned_cols=234  Identities=17%  Similarity=0.241  Sum_probs=189.2

Q ss_pred             CCCeEeeCCC--CCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCce----eEeeecccccc
Q 010571            3 SGSWHLELPY--DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAW----SNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W----~~~~~~~~~~~   76 (507)
                      +++|.|+...  ..|..++   .+|.||..++++++++.||++||..+...++++++||+.+.+|    ..++       
T Consensus        39 ~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-------  108 (323)
T TIGR03548        39 KGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-------  108 (323)
T ss_pred             eeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-------
Confidence            3678785332  2799888   7899999888899999999999988777788999999999998    3333       


Q ss_pred             CccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC-CCcccceEEEECCEEE
Q 010571           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLVGSRLI  155 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~l~  155 (507)
                               +.|.+|..|++++++++||++||..... ..+++++||+.+++|+.++   ++| .+|..++++.++++||
T Consensus       109 ---------~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iY  175 (323)
T TIGR03548       109 ---------NLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELP---DFPGEPRVQPVCVKLQNELY  175 (323)
T ss_pred             ---------CCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECC---CCCCCCCCcceEEEECCEEE
Confidence                     3356889999999999999999975433 3688999999999999987   676 4788888999999999


Q ss_pred             EEcCcCCCCCccCcEEEEEcCCCcEEEeecCC--CCCCCCCCceEEEEcCcEEEEEeCCCCCc-----------------
Q 010571          156 IFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHSI-----------------  216 (507)
Q Consensus       156 ~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-----------------  216 (507)
                      ++||.+..  ..+++++||+.+++|+.+.+..  ..|..+..++++++.+++|||+||.+...                 
T Consensus       176 v~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~  253 (323)
T TIGR03548       176 VFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLK  253 (323)
T ss_pred             EEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhh
Confidence            99998643  2467899999999999987542  23444555666667678899999986421                 


Q ss_pred             ---------------CCCcEEEEECCCCcEEeeeecCCCC-CCCcceEEEEECCEEEEEeccCC
Q 010571          217 ---------------FFNDLHVLDLQTNEWSQPEIKGDLV-TGRAGHAGITIDENWYIVGGGDN  264 (507)
Q Consensus       217 ---------------~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~  264 (507)
                                     ..+++++||+.+++|+.+   +++| .+|.++++++++++||++||...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~~r~~~~~~~~~~~iyv~GG~~~  314 (323)
T TIGR03548       254 GYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSI---GNSPFFARCGAALLLTGNNIFSINGELK  314 (323)
T ss_pred             hhHHHHhCCCccccCcCceEEEEECCCCeeeEc---ccccccccCchheEEECCEEEEEecccc
Confidence                           246799999999999997   3455 58999999999999999999643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1.9e-32  Score=269.87  Aligned_cols=245  Identities=22%  Similarity=0.369  Sum_probs=190.7

Q ss_pred             CCCeEeeC--CCCCeEEeccCCCCC-CccccceEEEECCEEEEEcCCCCC------ccCCceEEEECCCCceeEeeeccc
Q 010571            3 SGSWHLEL--PYDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGSRNG------RFLSDVQVFDLRSLAWSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~--~~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~~~~d~~t~~W~~~~~~~~   73 (507)
                      ++.|.||+  ..+.|..++   ++| .+|..|+++++++.||++||....      ..++++++||+.+++|+.++..  
T Consensus        29 ~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~--  103 (346)
T TIGR03547        29 TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR--  103 (346)
T ss_pred             CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC--
Confidence            46789996  678999998   688 589999999999999999997532      2467899999999999998732  


Q ss_pred             cccCccccCCccCCCCCccceeeE-EECCEEEEEcccCCCC---------------------------------CCcceE
Q 010571           74 LDADKTEDSGLLEVLPPMSDHCMV-KWGTKLLILGGHYKKS---------------------------------SDSMIV  119 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~---------------------------------~~~~~~  119 (507)
                                   .|.+|.+|+++ +.+++||++||.....                                 ...+++
T Consensus       104 -------------~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  170 (346)
T TIGR03547       104 -------------SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNV  170 (346)
T ss_pred             -------------CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceE
Confidence                         13467778777 6899999999976321                                 013689


Q ss_pred             EEEECCCCcEEEeecCCCCCC-CcccceEEEECCEEEEEcCcCCCCCccCcEEEEEc--CCCcEEEeecCCCCCCCC---
Q 010571          120 RFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTPPAPR---  193 (507)
Q Consensus       120 ~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~--~t~~W~~~~~~g~~p~~r---  193 (507)
                      ++||+.+++|+.+.   +||. +|.+++++.++++||++||.........+++.|++  .+++|+.+.   ++|.+|   
T Consensus       171 ~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~  244 (346)
T TIGR03547       171 LSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSS  244 (346)
T ss_pred             EEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC---CCCCCCCCc
Confidence            99999999999997   7885 68889999999999999998654433456766654  677999987   445444   


Q ss_pred             ----CCceEEEEcCcEEEEEeCCCCCc-----------------CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE
Q 010571          194 ----YDHSAALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       194 ----~~~~~~~~~~~~l~i~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                          .+|+++++ +++|||+||.....                 .++.+.+||+.+++|+.+   +++|.+|..++++++
T Consensus       245 ~~~~~~~~a~~~-~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~~~~~~~~~~  320 (346)
T TIGR03547       245 QEGLAGAFAGIS-NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV---GKLPQGLAYGVSVSW  320 (346)
T ss_pred             cccccEEeeeEE-CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc---CCCCCCceeeEEEEc
Confidence                34445566 56699999975211                 124688999999999986   678999999998899


Q ss_pred             CCEEEEEeccCCC-CCcceEEEEE
Q 010571          253 DENWYIVGGGDNN-NGCQETIVLN  275 (507)
Q Consensus       253 ~~~l~v~GG~~~~-~~~~d~~~~d  275 (507)
                      +++|||+||.+.. ...++++.|.
T Consensus       321 ~~~iyv~GG~~~~~~~~~~v~~~~  344 (346)
T TIGR03547       321 NNGVLLIGGENSGGKAVTDVYLLS  344 (346)
T ss_pred             CCEEEEEeccCCCCCEeeeEEEEE
Confidence            9999999998654 3466777664

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=1.8e-32  Score=271.84  Aligned_cols=253  Identities=22%  Similarity=0.355  Sum_probs=196.2

Q ss_pred             CCCeEeeCC--CCCeEEeccCCCCC-CccccceEEEECCEEEEEcCCCC------CccCCceEEEECCCCceeEeeeccc
Q 010571            3 SGSWHLELP--YDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~------~~~~~~~~~~d~~t~~W~~~~~~~~   73 (507)
                      +..|.||+.  .+.|..++   ++| .+|.+|+++++++.||++||...      ...++++++||+.+++|..++... 
T Consensus        50 ~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~-  125 (376)
T PRK14131         50 TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS-  125 (376)
T ss_pred             CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC-
Confidence            446899986  47899998   566 58999999999999999999764      134688999999999999987421 


Q ss_pred             cccCccccCCccCCCCCccceeeEE-ECCEEEEEcccCCCC---------------------------------CCcceE
Q 010571           74 LDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKS---------------------------------SDSMIV  119 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~---------------------------------~~~~~~  119 (507)
                                    |.++.+|++++ .+++||++||.....                                 ...+++
T Consensus       126 --------------p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v  191 (376)
T PRK14131        126 --------------PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV  191 (376)
T ss_pred             --------------CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE
Confidence                          34677888777 799999999975320                                 024689


Q ss_pred             EEEECCCCcEEEeecCCCCCC-CcccceEEEECCEEEEEcCcCCCCCccCcEEE--EEcCCCcEEEeecCCCCCCCCCCc
Q 010571          120 RFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF--LDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       120 ~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~--~d~~t~~W~~~~~~g~~p~~r~~~  196 (507)
                      ++||+.+++|..+.   ++|. +|.+++++.++++||++||....+....+++.  ||+.+.+|..+.   ++|.+|.++
T Consensus       192 ~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~  265 (376)
T PRK14131        192 LSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGS  265 (376)
T ss_pred             EEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC---CCCCCCcCC
Confidence            99999999999986   7785 78888999999999999998654434555554  566889999987   455555321


Q ss_pred             -------e-EEEEcCcEEEEEeCCCCCc-----------------CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE
Q 010571          197 -------S-AALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT  251 (507)
Q Consensus       197 -------~-~~~~~~~~l~i~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~  251 (507)
                             . ++++ +++|||+||.+...                 ....+.+||+.+++|+.+   +.+|.+|..|++++
T Consensus       266 ~~~~~~~~~a~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~r~~~~av~  341 (376)
T PRK14131        266 SQEGVAGAFAGYS-NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV---GELPQGLAYGVSVS  341 (376)
T ss_pred             cCCccceEeceeE-CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc---CcCCCCccceEEEE
Confidence                   2 3444 66799999975321                 112467899999999986   67899999999999


Q ss_pred             ECCEEEEEeccCCC-CCcceEEEEEcCcCeeEE
Q 010571          252 IDENWYIVGGGDNN-NGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       252 ~~~~l~v~GG~~~~-~~~~d~~~~d~~~~~W~~  283 (507)
                      +++.|||+||.... ...++++.|++..+.+..
T Consensus       342 ~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        342 WNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             eCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            99999999997543 457899999988877653

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=6.6e-32  Score=275.24  Aligned_cols=211  Identities=18%  Similarity=0.249  Sum_probs=184.8

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCC
Q 010571           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK  112 (507)
Q Consensus        33 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  112 (507)
                      ++.+++.||++||.......+.++.|||.+++|..+++++.                +|..+++++++++||++||....
T Consensus       267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~----------------~r~~~~~v~~~~~iYviGG~~~~  330 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS----------------PRLYASGVPANNKLYVVGGLPNP  330 (480)
T ss_pred             eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc----------------hhhcceEEEECCEEEEECCcCCC
Confidence            34589999999998766677889999999999999987753                89999999999999999997532


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                          ++++.||+.+++|..++   +||.+|.++++++++++||++||.+..   .+.+.+||+.+++|+.++   ++|.+
T Consensus       331 ----~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~  397 (480)
T PHA02790        331 ----TSVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYP  397 (480)
T ss_pred             ----CceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCc
Confidence                45899999999999998   899999999999999999999998643   367999999999999987   67889


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEE
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~  272 (507)
                      |..|+++++ +++||++||.        +.+||+.+++|+.+   +++|.+|..+++++++++||++||.++....+.++
T Consensus       398 r~~~~~~~~-~~~IYv~GG~--------~e~ydp~~~~W~~~---~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve  465 (480)
T PHA02790        398 HYKSCALVF-GRRLFLVGRN--------AEFYCESSNTWTLI---DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIE  465 (480)
T ss_pred             cccceEEEE-CCEEEEECCc--------eEEecCCCCcEeEc---CCCCCCccccEEEEECCEEEEECCcCCCcccceEE
Confidence            999988887 5569999983        57899999999986   57889999999999999999999987555567899


Q ss_pred             EEEcCcCeeEEe
Q 010571          273 VLNMTKLAWSIL  284 (507)
Q Consensus       273 ~~d~~~~~W~~~  284 (507)
                      +||+.+++|+..
T Consensus       466 ~Yd~~~~~W~~~  477 (480)
T PHA02790        466 VYNNRTYSWNIW  477 (480)
T ss_pred             EEECCCCeEEec
Confidence            999999999854

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=100.00  E-value=1.3e-32  Score=253.67  Aligned_cols=217  Identities=28%  Similarity=0.510  Sum_probs=191.2

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEEC-CEEEEEcCCCC------CccCCceEEEECCCCceeEeeeccccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFD-QKLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETELD   75 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~------~~~~~~~~~~d~~t~~W~~~~~~~~~~   75 (507)
                      +|.|.||+..+.|+.+..+ ..|+||.+|.+|++. +.+|||||...      ....+++|+||+.+.+|+++...+   
T Consensus        98 ndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g---  173 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG---  173 (521)
T ss_pred             eeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC---
Confidence            7899999999999988743 478999999999995 89999999432      234568999999999999998754   


Q ss_pred             cCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCC---CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-C
Q 010571           76 ADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS---DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G  151 (507)
Q Consensus        76 ~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~  151 (507)
                                 .|.+|.+|-+++..++|++|||......   ++|++|+||+.|.+|.++.+.|..|.||+++++++. .
T Consensus       174 -----------~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpq  242 (521)
T KOG1230|consen  174 -----------GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQ  242 (521)
T ss_pred             -----------CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCC
Confidence                       4889999999999999999999855433   789999999999999999998889999999999888 8


Q ss_pred             CEEEEEcCcCC--------CCCccCcEEEEEcCC-----CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCC----
Q 010571          152 SRLIIFGGEDR--------SRKLLNDVHFLDLET-----MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH----  214 (507)
Q Consensus       152 ~~l~~~GG~~~--------~~~~~~~~~~~d~~t-----~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~----  214 (507)
                      +.||++||+..        .+..++|++.+++.+     ..|..+.+.|-.|.||+++++++..+++.+.|||..+    
T Consensus       243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eee  322 (521)
T KOG1230|consen  243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEE  322 (521)
T ss_pred             CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccccc
Confidence            99999999852        355789999999988     7899999999999999999999999988999999853    


Q ss_pred             -----CcCCCcEEEEECCCCcEEee
Q 010571          215 -----SIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       215 -----~~~~~~i~~~d~~~~~W~~~  234 (507)
                           +.+.||+|.||+..+.|...
T Consensus       323 eEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  323 EESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             chhhhhhhhhhhhheecccchhhHh
Confidence                 36789999999999999874

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=1.6e-29  Score=257.73  Aligned_cols=191  Identities=19%  Similarity=0.370  Sum_probs=169.6

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      +.+|+|||.++.|..++   ++|.+|..++++++++.||++||..+   .+.++.||+.+++|..+++++          
T Consensus       287 ~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~----------  350 (480)
T PHA02790        287 NNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLL----------  350 (480)
T ss_pred             CeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCC----------
Confidence            45899999999999999   79999999999999999999999753   256999999999999988765          


Q ss_pred             CccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC
Q 010571           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~  162 (507)
                            .+|.+|++++++++||++||....   .+.+++|||.+++|+.++   +||.+|.++++++++++||++||.  
T Consensus       351 ------~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~IYv~GG~--  416 (480)
T PHA02790        351 ------KPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRRLFLVGRN--  416 (480)
T ss_pred             ------CCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCEEEEECCc--
Confidence                  389999999999999999997543   356899999999999988   899999999999999999999983  


Q ss_pred             CCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       163 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                             +.+||+.+++|+.++   ++|.+|..++++++ +++||++||.++....+.+++||+.+++|+..
T Consensus       417 -------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        417 -------AEFYCESSNTWTLID---DPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             -------eEEecCCCCcEeEcC---CCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence                   678999999999987   67889999999988 45699999987666678899999999999875

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.8e-29  Score=238.25  Aligned_cols=262  Identities=24%  Similarity=0.397  Sum_probs=220.3

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      +..-.||..+++|.....-|++|++-.-|+.+-.|..||+|||+-. +.++|++|.+-.....|+++.+...        
T Consensus        57 DELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p--------  128 (830)
T KOG4152|consen   57 DELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTP--------  128 (830)
T ss_pred             hhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCC--------
Confidence            3455799999999999999999999999999999999999999765 6788998888777788888876542        


Q ss_pred             CCccCCCCCccceeeEEECCEEEEEcccCCCCC--------CcceEEEEECCCC----cEEEeecCCCCCCCcccceEEE
Q 010571           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS--------DSMIVRFIDLETN----LCGVMETSGKVPVARGGHSVTL  149 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~d~~t~----~W~~~~~~g~~p~~r~~~~~~~  149 (507)
                       ....+|-||.+|+...++++.|+|||...+..        +++++|++++.-+    -|....+.|..|.+|..|.++.
T Consensus       129 -~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAVi  207 (830)
T KOG4152|consen  129 -KNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVI  207 (830)
T ss_pred             -CCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEE
Confidence             23577889999999999999999999754422        6889999998754    5999999999999999999988


Q ss_pred             E------CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC----------
Q 010571          150 V------GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS----------  213 (507)
Q Consensus       150 ~------~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~----------  213 (507)
                      +      ..++|+|||+++  +.+.|+|.+|++|..|.+++..|-.|.||+-|+++.++|. +|||||.-          
T Consensus       208 Y~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnK-MyvfGGWVPl~~~~~~~~  284 (830)
T KOG4152|consen  208 YTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNK-MYVFGGWVPLVMDDVKVA  284 (830)
T ss_pred             EEeccCCcceEEEEccccc--ccccceeEEecceeecccccccCCCCCCcccccceeecce-eEEecceeeeeccccccc
Confidence            7      238999999865  4589999999999999999999999999999999999665 99999962          


Q ss_pred             ----CCcCCCcEEEEECCCCcEEeeee----cCCCCCCCcceEEEEECCEEEEEeccCCC-------CCcceEEEEEc
Q 010571          214 ----HSIFFNDLHVLDLQTNEWSQPEI----KGDLVTGRAGHAGITIDENWYIVGGGDNN-------NGCQETIVLNM  276 (507)
Q Consensus       214 ----~~~~~~~i~~~d~~~~~W~~~~~----~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-------~~~~d~~~~d~  276 (507)
                          .-.+++.+-++|+.++.|..+..    ....|.+|.+|+++.++.+|||-.|.++.       -...|+|.+|.
T Consensus       285 ~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT  362 (830)
T KOG4152|consen  285 THEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT  362 (830)
T ss_pred             cccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence                11467889999999999998632    13378899999999999999999997543       23567888874

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.82  E-value=1.2e-18  Score=159.69  Aligned_cols=247  Identities=20%  Similarity=0.345  Sum_probs=184.4

Q ss_pred             CCCeEeeCC--CCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCC-----CccCCceEEEECCCCceeEeeeccccc
Q 010571            3 SGSWHLELP--YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN-----GRFLSDVQVFDLRSLAWSNLRLETELD   75 (507)
Q Consensus         3 ~~~~~~d~~--~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-----~~~~~~~~~~d~~t~~W~~~~~~~~~~   75 (507)
                      ...|.+|+.  ...|+++..  .+-.+|-+..+++++++||+|||...     .+..+++|+|||.+++|.++.+..   
T Consensus        58 ~afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s---  132 (381)
T COG3055          58 TAFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS---  132 (381)
T ss_pred             ccceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc---
Confidence            345678877  579999984  44467999999999999999999643     356789999999999999998754   


Q ss_pred             cCccccCCccCCCCCccceeeEEECC-EEEEEcccCCC---------------------------------CCCcceEEE
Q 010571           76 ADKTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKK---------------------------------SSDSMIVRF  121 (507)
Q Consensus        76 ~~~~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~~~~~  121 (507)
                                  |....+++++..++ +||++||.+..                                 ......+..
T Consensus       133 ------------P~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~s  200 (381)
T COG3055         133 ------------PTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLS  200 (381)
T ss_pred             ------------ccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccc
Confidence                        55788999999987 99999998321                                 113567999


Q ss_pred             EECCCCcEEEeecCCCCC-CCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcC--CCcEEEeecCCCCCCCCCCc--
Q 010571          122 IDLETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE--TMTWDAVEVTQTPPAPRYDH--  196 (507)
Q Consensus       122 ~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~--t~~W~~~~~~g~~p~~r~~~--  196 (507)
                      |+|.++.|+.+-   ..| .++++.+.+.-++.+.++-|.-.++-++..+..++..  ..+|..+.   ++|.+.+..  
T Consensus       201 y~p~~n~W~~~G---~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~e  274 (381)
T COG3055         201 YDPSTNQWRNLG---ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKE  274 (381)
T ss_pred             cccccchhhhcC---cCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc---CCCCCCCCCcc
Confidence            999999999885   455 5566655544567799999987676667778877764  56899886   344443322  


Q ss_pred             --e--EEEEcCcEEEEEeCCC---------------C----CcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEEC
Q 010571          197 --S--AALHANRYLIVFGGCS---------------H----SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID  253 (507)
Q Consensus       197 --~--~~~~~~~~l~i~GG~~---------------~----~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~  253 (507)
                        +  +.-..++.+++.||..               +    ....++||.||  .+.|+.+   +.+|.++++.+++..+
T Consensus       275 GvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~---GeLp~~l~YG~s~~~n  349 (381)
T COG3055         275 GVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV---GELPQGLAYGVSLSYN  349 (381)
T ss_pred             ccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee---cccCCCccceEEEecC
Confidence              1  1123456688888864               1    13567899998  8899996   8999999998999999


Q ss_pred             CEEEEEeccCCCC-CcceEEEEEcC
Q 010571          254 ENWYIVGGGDNNN-GCQETIVLNMT  277 (507)
Q Consensus       254 ~~l~v~GG~~~~~-~~~d~~~~d~~  277 (507)
                      +.+|++||-+..+ ....++.+...
T Consensus       350 n~vl~IGGE~~~Gka~~~v~~l~~~  374 (381)
T COG3055         350 NKVLLIGGETSGGKATTRVYSLSWD  374 (381)
T ss_pred             CcEEEEccccCCCeeeeeEEEEEEc
Confidence            9999999976553 34556655433

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.76  E-value=1.8e-16  Score=145.64  Aligned_cols=273  Identities=18%  Similarity=0.235  Sum_probs=193.1

Q ss_pred             CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCC--CceeEeeeccccccCccccCCccCCCCCccceeeEEEC
Q 010571           23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG  100 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~  100 (507)
                      .+|.+--.-+.+.+++.+||-=|..+    ...+.+|+..  ..|+++...+..               +|.+..++.++
T Consensus        32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~---------------~rnqa~~a~~~   92 (381)
T COG3055          32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGG---------------ARNQAVAAVIG   92 (381)
T ss_pred             CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCc---------------ccccchheeeC
Confidence            57777666677888999998655221    3467777764  579999987654               89999999999


Q ss_pred             CEEEEEcccCCCCC----CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCC-------------
Q 010571          101 TKLLILGGHYKKSS----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDR-------------  162 (507)
Q Consensus       101 ~~iyv~GG~~~~~~----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~-------------  162 (507)
                      ++||+|||......    ..+++|+|||.+++|..+.+  ..|....+++++..++ .||++||.+.             
T Consensus        93 ~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a  170 (381)
T COG3055          93 GKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAA  170 (381)
T ss_pred             CeEEEeeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhh
Confidence            99999999865544    46889999999999999986  4566788888888888 9999999742             


Q ss_pred             --------------------CCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC-CCcCCCcE
Q 010571          163 --------------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDL  221 (507)
Q Consensus       163 --------------------~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~-~~~~~~~i  221 (507)
                                          +..+...+..|++.+..|+.+-.  .+..++++ +++++.++.+.++-|.- ..-++..+
T Consensus       171 ~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~  247 (381)
T COG3055         171 GKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEV  247 (381)
T ss_pred             cccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc--CcccCccC-cceeecCCeEEEEcceecCCccccce
Confidence                                11345679999999999998853  23345555 56667777677777754 33455667


Q ss_pred             EEEECCC--CcEEeeeecCCCCCCCcc-------eEEEEECCEEEEEeccCC--------------C-----CCcceEEE
Q 010571          222 HVLDLQT--NEWSQPEIKGDLVTGRAG-------HAGITIDENWYIVGGGDN--------------N-----NGCQETIV  273 (507)
Q Consensus       222 ~~~d~~~--~~W~~~~~~~~~p~~r~~-------~~~~~~~~~l~v~GG~~~--------------~-----~~~~d~~~  273 (507)
                      +.++...  .+|..+   +++|.+...       +-+-..++.++|.||.+=              +     ...+++|+
T Consensus       248 k~~~~~~~~~~w~~l---~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~  324 (381)
T COG3055         248 KQADFGGDNLKWLKL---SDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYI  324 (381)
T ss_pred             eEEEeccCceeeeec---cCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEE
Confidence            7777754  469886   444444322       222234678888888531              1     11357889


Q ss_pred             EEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccC--CCcCCeEEEEECCC
Q 010571          274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEVFVMRLKP  332 (507)
Q Consensus       274 ~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~v~~~~~~~  332 (507)
                      ||  .+.|+.+..+|...       ...+ .+..++.||++||.+  +...+.|+.+....
T Consensus       325 ~d--~g~Wk~~GeLp~~l-------~YG~-s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~g  375 (381)
T COG3055         325 FD--NGSWKIVGELPQGL-------AYGV-SLSYNNKVLLIGGETSGGKATTRVYSLSWDG  375 (381)
T ss_pred             Ec--CCceeeecccCCCc-------cceE-EEecCCcEEEEccccCCCeeeeeEEEEEEcC
Confidence            98  99999998886521       1112 222244799999986  45678888776643

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.71  E-value=9.5e-18  Score=159.13  Aligned_cols=261  Identities=20%  Similarity=0.254  Sum_probs=187.0

Q ss_pred             CCCeEEeccCC-------CCCCccccceEEEECC--EEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571           12 YDLWVTLPVSG-------ARPSPRYKHAAAVFDQ--KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus        12 ~~~W~~~~~~~-------~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .-.|.+++...       ..|..|.||.+|...+  .||++||+++-..+.++|+|+...+.|..+..-.          
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t----------  307 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT----------  307 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC----------
Confidence            56788777544       5688899999998855  9999999999999999999999999999886543          


Q ss_pred             CccCCCCCccceeeEEECC--EEEEEcccCCCCC-----CcceEEEEECCCCcEEEeecC---CCCCCCcccceEEEECC
Q 010571           83 GLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETS---GKVPVARGGHSVTLVGS  152 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~-----~~~~~~~~d~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~  152 (507)
                         ..|..|..|-++..-.  +||++|-+-+.+.     ..+++|+||..++.|..+.-.   ...|.....|.+++.++
T Consensus       308 ---~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~  384 (723)
T KOG2437|consen  308 ---EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSE  384 (723)
T ss_pred             ---CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecC
Confidence               3477899999998754  9999997644322     467899999999999988642   23678889999999988


Q ss_pred             E--EEEEcCcC--CCCCccCcEEEEEcCCCcEEEeecCC-------CCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCc
Q 010571          153 R--LIIFGGED--RSRKLLNDVHFLDLETMTWDAVEVTQ-------TPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFND  220 (507)
Q Consensus       153 ~--l~~~GG~~--~~~~~~~~~~~~d~~t~~W~~~~~~g-------~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~  220 (507)
                      +  ||||||+.  .+......+|+||+....|..+...-       .....|.+|+|-.+. +..+|+|||.+...-++-
T Consensus       385 k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L  464 (723)
T KOG2437|consen  385 KHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNL  464 (723)
T ss_pred             cceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEee
Confidence            7  99999983  23234678999999999998765321       112357788877664 457899999876666666


Q ss_pred             EEEEECCCCcEEeee-----ecCCCCCCCcceEEEEE---CCEEEEEeccCCC------CCcceEEEEEcCcCeeEEecc
Q 010571          221 LHVLDLQTNEWSQPE-----IKGDLVTGRAGHAGITI---DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       221 i~~~d~~~~~W~~~~-----~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~------~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      ...|++...+-..+.     .+...|. +....-+..   .+.|.+.-|....      ...+.+|+|++.++.|.+|..
T Consensus       465 ~f~y~I~~E~~~~~s~~~k~dsS~~pS-~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~  543 (723)
T KOG2437|consen  465 FFSYDIDSEHVDIISDGTKKDSSMVPS-TGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYK  543 (723)
T ss_pred             hhcceeccccchhhhccCcCccccCCC-cchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhh
Confidence            667766543322211     0111121 111111222   3467777776422      235789999999999988743

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.59  E-value=1.4e-15  Score=144.63  Aligned_cols=273  Identities=17%  Similarity=0.225  Sum_probs=188.5

Q ss_pred             CCCceeEeeeccccccCccccCCccCCCCCccceeeEEECC--EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC
Q 010571           61 RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV  138 (507)
Q Consensus        61 ~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~  138 (507)
                      .+-.|.+++.....      -++...-|..|.+|.++...+  +||++||+++... ..++|.|+...+.|..+...+..
T Consensus       237 y~~~W~~i~~~~~~------~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~  309 (723)
T KOG2437|consen  237 YKPRWSQIIPKSTK------GDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEG  309 (723)
T ss_pred             ccccccccCchhhc------ccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCC
Confidence            35678887765410      011124577899999999854  9999999998776 78899999999999999877779


Q ss_pred             CCCcccceEEEECC--EEEEEcCcCCCC-----CccCcEEEEEcCCCcEEEeecCC---CCCCCCCCceEEEEcCc-EEE
Q 010571          139 PVARGGHSVTLVGS--RLIIFGGEDRSR-----KLLNDVHFLDLETMTWDAVEVTQ---TPPAPRYDHSAALHANR-YLI  207 (507)
Q Consensus       139 p~~r~~~~~~~~~~--~l~~~GG~~~~~-----~~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~~~~~-~l~  207 (507)
                      |.+|..|.++..-.  ++|+.|-+-+..     ..-.|+|.||.++..|.-++-..   ..|...+.|.|++.++. .+|
T Consensus       310 PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iy  389 (723)
T KOG2437|consen  310 PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIY  389 (723)
T ss_pred             CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEE
Confidence            99999999988765  899999874322     23568999999999999886432   35888999999998663 589


Q ss_pred             EEeCCCCC---cCCCcEEEEECCCCcEEeeeec----C---CCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEE
Q 010571          208 VFGGCSHS---IFFNDLHVLDLQTNEWSQPEIK----G---DLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       208 i~GG~~~~---~~~~~i~~~d~~~~~W~~~~~~----~---~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d  275 (507)
                      ||||..-.   ....-+|.||.....|..+...    +   ..-..|.+|.+-..  ++.+|++||...+..++-...|+
T Consensus       390 VfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~  469 (723)
T KOG2437|consen  390 VFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYD  469 (723)
T ss_pred             EecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcce
Confidence            99998532   3456699999999999885321    1   11224777776555  56799999976665555455566


Q ss_pred             cCcCeeEEeccCC--CCCCCCCCCCceEEEEEcCceEEEEEcccC-------CCcCCeEEEEECCCCCCCCCcc
Q 010571          276 MTKLAWSILTSVK--GRNPLASEGLSVCSAIIEGEHHLVAFGGYN-------GKYNNEVFVMRLKPRDIPRPKI  340 (507)
Q Consensus       276 ~~~~~W~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~-------~~~~~~v~~~~~~~~~w~~~~~  340 (507)
                      +....=..+....  ...-.|..++...++.-+..+.|.+.-|..       .+..+.+|+|++.++.|..+..
T Consensus       470 I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~  543 (723)
T KOG2437|consen  470 IDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYK  543 (723)
T ss_pred             eccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhh
Confidence            5443322221110  111112223333333334456777777764       2356889999999999977654

>PF13964 Kelch_6: Kelch motif

Probab=99.20  E-value=4.7e-11  Score=81.17  Aligned_cols=50  Identities=30%  Similarity=0.346  Sum_probs=45.7

Q ss_pred             CccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCc
Q 010571           90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR  142 (507)
Q Consensus        90 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  142 (507)
                      +|.+|++++++++|||+||........+++++||+.|++|+.++   +||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence            58999999999999999999886556889999999999999998   888876

>PLN02772 guanylate kinase

Probab=99.18  E-value=1.9e-10  Score=110.63  Aligned_cols=92  Identities=22%  Similarity=0.290  Sum_probs=81.0

Q ss_pred             CCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCC
Q 010571          136 GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS  215 (507)
Q Consensus       136 g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~  215 (507)
                      |-.+.++.+++++.+++++|++||.++.+..++.+++||+.|.+|..+.+.|..|.+|.+|+++++++++|+|+++....
T Consensus        19 ~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~   98 (398)
T PLN02772         19 GFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP   98 (398)
T ss_pred             CccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence            34567899999999999999999998876578999999999999999999999999999999999999999999986544


Q ss_pred             cCCCcEEEEECCCC
Q 010571          216 IFFNDLHVLDLQTN  229 (507)
Q Consensus       216 ~~~~~i~~~d~~~~  229 (507)
                      .  .++|.+.+.|-
T Consensus        99 ~--~~~w~l~~~t~  110 (398)
T PLN02772         99 D--DSIWFLEVDTP  110 (398)
T ss_pred             c--cceEEEEcCCH
Confidence            2  67888887663

>PF13964 Kelch_6: Kelch motif

Probab=99.10  E-value=2.3e-10  Score=77.71  Aligned_cols=46  Identities=37%  Similarity=0.761  Sum_probs=43.0

Q ss_pred             ccccceEEEECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeecc
Q 010571           27 PRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLET   72 (507)
Q Consensus        27 ~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~   72 (507)
                      ||.+|++++++++||||||..+ ...++++++||+.|++|+.+++++
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            6999999999999999999888 788899999999999999999775

>PLN02772 guanylate kinase

Probab=99.01  E-value=2.3e-09  Score=103.29  Aligned_cols=90  Identities=16%  Similarity=0.269  Sum_probs=76.1

Q ss_pred             CCCCCCCCCceEEEEcCcEEEEEeCCCCCc-CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCC
Q 010571          187 QTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN  264 (507)
Q Consensus       187 g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~  264 (507)
                      |..+.++.+++++.+++ ++|||||..+.. .++.+++||..+.+|..+.+.|..|.||.+|+++++ +++|+|++++..
T Consensus        19 ~~~~~~~~~~tav~igd-k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~   97 (398)
T PLN02772         19 GFGVKPKNRETSVTIGD-KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA   97 (398)
T ss_pred             CccCCCCCcceeEEECC-EEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC
Confidence            34566899999999965 599999987765 789999999999999999999999999999999999 578999987654


Q ss_pred             CCCcceEEEEEcCcC
Q 010571          265 NNGCQETIVLNMTKL  279 (507)
Q Consensus       265 ~~~~~d~~~~d~~~~  279 (507)
                      ..  .++|.+.+.+.
T Consensus        98 ~~--~~~w~l~~~t~  110 (398)
T PLN02772         98 PD--DSIWFLEVDTP  110 (398)
T ss_pred             Cc--cceEEEEcCCH
Confidence            42  56888887664

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=99.00  E-value=3e-08  Score=88.88  Aligned_cols=162  Identities=23%  Similarity=0.385  Sum_probs=106.1

Q ss_pred             EEEEEcCcCCCCCccCcEEEEEcCCCc--------EEEeecCCCCCCCCCCceEEEE---cCcEEEEEeCCCCC------
Q 010571          153 RLIIFGGEDRSRKLLNDVHFLDLETMT--------WDAVEVTQTPPAPRYDHSAALH---ANRYLIVFGGCSHS------  215 (507)
Q Consensus       153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~--------W~~~~~~g~~p~~r~~~~~~~~---~~~~l~i~GG~~~~------  215 (507)
                      ..+|.||...++...+.+|++.+.+..        ..+...-|+.|.+|++|++.++   +....++|||.+.-      
T Consensus        40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT  119 (337)
T PF03089_consen   40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT  119 (337)
T ss_pred             eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence            466779999888888999999876543        4455566899999999999886   33468999998511      


Q ss_pred             --------cCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC--CCcceEEEEEcCcCeeEEec
Q 010571          216 --------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--NGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       216 --------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~d~~~~d~~~~~W~~~~  285 (507)
                              .+...++.+|+.-+..+.-. .+.+....++|.+.+-+|.+|++||+.-.  .....++.+...--    +.
T Consensus       120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLl----lG  194 (337)
T PF03089_consen  120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLL----LG  194 (337)
T ss_pred             hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeec----CC
Confidence                    23456889999888777632 25666778899999999999999998533  23344555542211    01


Q ss_pred             cCCCCCCCCCCCCceEEEEE--cCceEEEEEcccCC
Q 010571          286 SVKGRNPLASEGLSVCSAII--EGEHHLVAFGGYNG  319 (507)
Q Consensus       286 ~~~~~~p~~~~~~~~~~~~~--~~~~~l~v~GG~~~  319 (507)
                      ++.........+.+..++++  .+.+..+|+||+..
T Consensus       195 SP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~s  230 (337)
T PF03089_consen  195 SPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQS  230 (337)
T ss_pred             CceeEEEECCCCceEeeeeEeecCCCceEEEecccc
Confidence            11101111223444444333  23467888999864

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.96  E-value=1.6e-09  Score=73.15  Aligned_cols=48  Identities=42%  Similarity=0.758  Sum_probs=42.5

Q ss_pred             CCEEEEEcCcC-CCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEE
Q 010571          151 GSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH  201 (507)
Q Consensus       151 ~~~l~~~GG~~-~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~  201 (507)
                      +++||||||.+ .....+|++++||+.+.+|+.+   +++|.+|++|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence            57899999998 4566799999999999999988   478999999999874

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.95  E-value=1.9e-09  Score=72.72  Aligned_cols=47  Identities=43%  Similarity=0.730  Sum_probs=42.2

Q ss_pred             CcEEEEEeCCC--CCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE
Q 010571          203 NRYLIVFGGCS--HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       203 ~~~l~i~GG~~--~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                      +++||||||.+  ....+|++|+||+.+++|+.+   +++|.+|++|++++|
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence            45799999998  568889999999999999997   789999999999875

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.94  E-value=1.7e-09  Score=72.45  Aligned_cols=47  Identities=30%  Similarity=0.422  Sum_probs=42.3

Q ss_pred             CccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC
Q 010571           90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP  139 (507)
Q Consensus        90 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p  139 (507)
                      ||.+|++++++++||++||.......++++++||+.+++|+.++   +||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~---~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP---PMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE---EES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC---CCC
Confidence            58999999999999999999996667999999999999999998   554

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.93  E-value=1.5e-09  Score=72.77  Aligned_cols=46  Identities=33%  Similarity=0.608  Sum_probs=42.0

Q ss_pred             ccccceEEEECCEEEEEcCCCC-CccCCceEEEECCCCceeEeeecc
Q 010571           27 PRYKHAAAVFDQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLET   72 (507)
Q Consensus        27 ~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~   72 (507)
                      ||.+|+++++++.||++||... ...++++++||+.+++|..+++++
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            6999999999999999999887 788899999999999999999863

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.91  E-value=3.3e-09  Score=71.59  Aligned_cols=45  Identities=42%  Similarity=0.764  Sum_probs=41.2

Q ss_pred             ccccceEEEECCEEEEEcCC---CCCccCCceEEEECCCCceeEeeec
Q 010571           27 PRYKHAAAVFDQKLYIVGGS---RNGRFLSDVQVFDLRSLAWSNLRLE   71 (507)
Q Consensus        27 ~r~~~~~~~~~~~lyv~GG~---~~~~~~~~~~~~d~~t~~W~~~~~~   71 (507)
                      ||.+|++++++++||||||.   ......+++++||+.+.+|+.++++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence            69999999999999999999   5567889999999999999998865

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.86  E-value=8.9e-07  Score=79.64  Aligned_cols=139  Identities=24%  Similarity=0.311  Sum_probs=93.8

Q ss_pred             cCCCCCccceeeEEE-C-----C-EEEEEcccCCCCCCcceEEEEECCCCc--------EEEeecCCCCCCCcccceEEE
Q 010571           85 LEVLPPMSDHCMVKW-G-----T-KLLILGGHYKKSSDSMIVRFIDLETNL--------CGVMETSGKVPVARGGHSVTL  149 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~-~-----~-~iyv~GG~~~~~~~~~~~~~~d~~t~~--------W~~~~~~g~~p~~r~~~~~~~  149 (507)
                      +.-.||..+.+++.+ +     . .-++-||.+++....+.+|++...+..        +.+....|+.|.+|++|++.+
T Consensus        16 SCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~v   95 (337)
T PF03089_consen   16 SCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINV   95 (337)
T ss_pred             cccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEE
Confidence            455566667777777 2     1 345678988888877888888776543        344445689999999999888


Q ss_pred             EC----CEEEEEcCcCCC-------------CCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCC
Q 010571          150 VG----SRLIIFGGEDRS-------------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC  212 (507)
Q Consensus       150 ~~----~~l~~~GG~~~~-------------~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~  212 (507)
                      +.    .-+++|||+..-             -.+...|+.+|+..+-.+..... .+-.+.++|.+.+- ++.+|++||.
T Consensus        96 V~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lp-El~dG~SFHvslar-~D~VYilGGH  173 (337)
T PF03089_consen   96 VHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLP-ELQDGQSFHVSLAR-NDCVYILGGH  173 (337)
T ss_pred             EEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccch-hhcCCeEEEEEEec-CceEEEEccE
Confidence            72    258899997421             12345688999988877665432 44556677766665 5569999998


Q ss_pred             CCC--cCCCcEEEEE
Q 010571          213 SHS--IFFNDLHVLD  225 (507)
Q Consensus       213 ~~~--~~~~~i~~~d  225 (507)
                      .-.  .....++++.
T Consensus       174 sl~sd~Rpp~l~rlk  188 (337)
T PF03089_consen  174 SLESDSRPPRLYRLK  188 (337)
T ss_pred             EccCCCCCCcEEEEE
Confidence            533  3334455554

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.84  E-value=9.5e-09  Score=69.32  Aligned_cols=44  Identities=30%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             CccceeeEEECCEEEEEccc--CCCCCCcceEEEEECCCCcEEEee
Q 010571           90 PMSDHCMVKWGTKLLILGGH--YKKSSDSMIVRFIDLETNLCGVME  133 (507)
Q Consensus        90 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~~d~~t~~W~~~~  133 (507)
                      ||.+|++++++++|||+||+  .......+++++||+.+++|+.++
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~   46 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS   46 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence            58999999999999999999  334446889999999999999987

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.81  E-value=4.8e-09  Score=70.94  Aligned_cols=47  Identities=23%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             CccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC
Q 010571           90 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP  139 (507)
Q Consensus        90 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p  139 (507)
                      ||++|+++.+ +++||||||........+++++||+.+++|++++   ++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence            6899999999 5999999999987666899999999999999995   665

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.80  E-value=5.3e-09  Score=70.69  Aligned_cols=45  Identities=33%  Similarity=0.731  Sum_probs=30.9

Q ss_pred             ccccceEEEE-CCEEEEEcCCCCC-ccCCceEEEECCCCceeEeeec
Q 010571           27 PRYKHAAAVF-DQKLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLE   71 (507)
Q Consensus        27 ~r~~~~~~~~-~~~lyv~GG~~~~-~~~~~~~~~d~~t~~W~~~~~~   71 (507)
                      ||.+|+++.+ ++.||||||.... ..++++++||+.+++|++++.+
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~   47 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM   47 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence            7999999999 5899999998775 6899999999999999999654

>PF13854 Kelch_5: Kelch motif

Probab=98.75  E-value=2.1e-08  Score=64.90  Aligned_cols=40  Identities=45%  Similarity=0.808  Sum_probs=36.0

Q ss_pred             CCCccccceEEEECCEEEEEcCCC--CCccCCceEEEECCCC
Q 010571           24 RPSPRYKHAAAVFDQKLYIVGGSR--NGRFLSDVQVFDLRSL   63 (507)
Q Consensus        24 ~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~~d~~t~   63 (507)
                      +|.||.+|++++++++||||||..  ....++++|+||+.+.
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            488999999999999999999988  4778899999998763

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.72  E-value=1.8e-06  Score=78.61  Aligned_cols=180  Identities=14%  Similarity=0.152  Sum_probs=112.5

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCC----CcEEEeecCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAP  192 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t----~~W~~~~~~g~~p~~  192 (507)
                      ..-..||+.|++++.+...   ....+...+..-++.+++.||....   ...+..|++.+    ..|.+...  .+-.+
T Consensus        46 a~s~~yD~~tn~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~  117 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSG  117 (243)
T ss_pred             EEEEEEecCCCcEEeccCC---CCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCC
Confidence            3466799999999988631   2222222233347899999998653   34688888865    67988763  47889


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC------CcEEeeeec-CCCCCCCcceEEEEECCEEEEEeccCCC
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------NEWSQPEIK-GDLVTGRAGHAGITIDENWYIVGGGDNN  265 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~------~~W~~~~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~  265 (507)
                      |-+.+++.+.|+.++|+||...     ..+.|-+..      ..|..+... ...+...+-+....-+++||+++..   
T Consensus       118 RWYpT~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---  189 (243)
T PF07250_consen  118 RWYPTATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---  189 (243)
T ss_pred             CccccceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---
Confidence            9999999999999999999872     223333321      122222111 1223334444555568999999763   


Q ss_pred             CCcceEEEEEcCcCee-EEeccCCCCC-CCCCCCCceEEEE--EcC---ceEEEEEcc
Q 010571          266 NGCQETIVLNMTKLAW-SILTSVKGRN-PLASEGLSVCSAI--IEG---EHHLVAFGG  316 (507)
Q Consensus       266 ~~~~d~~~~d~~~~~W-~~~~~~~~~~-p~~~~~~~~~~~~--~~~---~~~l~v~GG  316 (507)
                          +..+||..++++ +.++.+|+.. ..|..+.++-.-.  .+.   ...|+|+||
T Consensus       190 ----~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl~~~~~~~~~~evlvCGG  243 (243)
T PF07250_consen  190 ----GSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPLTDTPPNNYTAEVLVCGG  243 (243)
T ss_pred             ----CcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecCccCCCCCCCeEEEEeCC
Confidence                357899999987 7888888752 2222333222211  111   256888887

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13854 Kelch_5: Kelch motif

Probab=98.65  E-value=6.2e-08  Score=62.72  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=35.6

Q ss_pred             CCCCccceeeEEECCEEEEEcccCC-CCCCcceEEEEECCCC
Q 010571           87 VLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETN  127 (507)
Q Consensus        87 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~t~  127 (507)
                      .|++|.+|+++.++++|||+||... .....+++|+||+.++
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            3779999999999999999999994 5556889999998764

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.54  E-value=6.3e-06  Score=75.16  Aligned_cols=147  Identities=18%  Similarity=0.182  Sum_probs=95.6

Q ss_pred             ceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCC----CcE
Q 010571           54 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET----NLC  129 (507)
Q Consensus        54 ~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t----~~W  129 (507)
                      ....||+.|++++.+......               -+++++ ..-++++++.||....   ...+..|++.+    ..|
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~---------------FCSgg~-~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w  107 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDT---------------FCSGGA-FLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDW  107 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCC---------------cccCcC-CCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCc
Confidence            356899999999988765432               344443 3348899999998663   33577888876    679


Q ss_pred             EEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCC-----CcEEEeecCC-CCCCCCCCceEEEEc
Q 010571          130 GVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET-----MTWDAVEVTQ-TPPAPRYDHSAALHA  202 (507)
Q Consensus       130 ~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t-----~~W~~~~~~g-~~p~~r~~~~~~~~~  202 (507)
                      .....  .|-.+|.+.+++.+ +++++|+||....     ..+.+....     ..|..+.... ..+. -.+.-+.+..
T Consensus       108 ~e~~~--~m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~-nlYP~~~llP  179 (243)
T PF07250_consen  108 TESPN--DMQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPN-NLYPFVHLLP  179 (243)
T ss_pred             eECcc--cccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCcc-ccCceEEEcC
Confidence            88763  58899999988887 5699999998632     233333211     1222222111 1121 2233445567


Q ss_pred             CcEEEEEeCCCCCcCCCcEEEEECCCCcE-Eee
Q 010571          203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEW-SQP  234 (507)
Q Consensus       203 ~~~l~i~GG~~~~~~~~~i~~~d~~~~~W-~~~  234 (507)
                      +++||+|+..       +-.+||..++++ +.+
T Consensus       180 dG~lFi~an~-------~s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  180 DGNLFIFANR-------GSIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEEcC-------CcEEEeCCCCeEEeeC
Confidence            8889999983       567889999987 444

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>smart00612 Kelch Kelch domain

Probab=98.44  E-value=3.7e-07  Score=60.96  Aligned_cols=47  Identities=28%  Similarity=0.446  Sum_probs=40.3

Q ss_pred             EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC
Q 010571          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS  152 (507)
Q Consensus       102 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~  152 (507)
                      +||++||.... ..++++++||+.+++|...+   +||.+|..++++.+++
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence            48999998653 34788999999999999987   8999999999988764

>smart00612 Kelch Kelch domain

Probab=98.40  E-value=5.4e-07  Score=60.13  Aligned_cols=47  Identities=28%  Similarity=0.462  Sum_probs=40.9

Q ss_pred             EEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECC
Q 010571          205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE  254 (507)
Q Consensus       205 ~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~  254 (507)
                      +|||+||......++++++||+.++.|..+   +++|.+|..|+++++++
T Consensus         1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPL---PSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCceeeeEEEECCCCCeEccC---CCCCCccccceEEEeCC
Confidence            389999987767789999999999999986   57899999999888764

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.17  E-value=0.0012  Score=60.90  Aligned_cols=199  Identities=14%  Similarity=0.127  Sum_probs=106.9

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCC---cccc-eEEEE----CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCC
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVA---RGGH-SVTLV----GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  188 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~---r~~~-~~~~~----~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~  188 (507)
                      .+.++||.|+.|..++.   ++.+   ...+ ....+    +. +++.+....... ....+++|++.++.|+.+...  
T Consensus        15 ~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~--   88 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECS--   88 (230)
T ss_pred             cEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccC--
Confidence            58999999999999973   2221   1111 11112    12 555554432111 245789999999999998732  


Q ss_pred             CCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeecCCCCCCC----cceEEEEECCEEEEEeccC
Q 010571          189 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR----AGHAGITIDENWYIVGGGD  263 (507)
Q Consensus       189 ~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~  263 (507)
                      .+........+.+ ++.+|-+...........|..||+.+.+|.. +.    +|..+    .....+.++++|.++....
T Consensus        89 ~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~  163 (230)
T TIGR01640        89 PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKK  163 (230)
T ss_pred             CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecC
Confidence            2221222224445 5556665533221111269999999999995 42    23222    1335666688888776532


Q ss_pred             CCCCcceEEEEE-cCcCeeEEeccCCCCC-CCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          264 NNNGCQETIVLN-MTKLAWSILTSVKGRN-PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       264 ~~~~~~d~~~~d-~~~~~W~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      .. ..-++|+++ -....|+++-.++... +..... .....+++++ .|++..+.  ....-+..||+.+
T Consensus       164 ~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~-~~~~~~~~~g-~I~~~~~~--~~~~~~~~y~~~~  229 (230)
T TIGR01640       164 DT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD-NFLSGFTDKG-EIVLCCED--ENPFYIFYYNVGE  229 (230)
T ss_pred             CC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhh-eeEeEEeeCC-EEEEEeCC--CCceEEEEEeccC
Confidence            21 225788886 4456799865554311 111111 2233344554 44444432  1112378888765

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.14  E-value=0.0011  Score=61.24  Aligned_cols=199  Identities=14%  Similarity=0.128  Sum_probs=111.7

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccc--cceEEEE------CC-EEEEEcCCCCCccCCceEEEECCCCceeEeeeccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRY--KHAAAVF------DQ-KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~--~~~~~~~------~~-~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~   73 (507)
                      ...+++||-+.+|..+|.   .+.++.  ...+..+      +. +|+.+.....+.....+.+|+..++.|+.+...+.
T Consensus        14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~   90 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPP   90 (230)
T ss_pred             CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCC
Confidence            345789999999999983   222111  1101111      11 34444332112234578999999999999874221


Q ss_pred             cccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEE-eecCCCCCCCc----ccceEE
Q 010571           74 LDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METSGKVPVAR----GGHSVT  148 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~g~~p~~r----~~~~~~  148 (507)
                                    . .......+.+++.||.+.-...... ...+..||+.+.+|.. ++    +|..+    ....++
T Consensus        91 --------------~-~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~  150 (230)
T TIGR01640        91 --------------H-HPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLI  150 (230)
T ss_pred             --------------C-ccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee----cCccccccccceEEE
Confidence                          1 1111226778999999875432211 1269999999999995 54    34332    234567


Q ss_pred             EECCEEEEEcCcCCCCCccCcEEEEE-cCCCcEEEeecCCCCCCCCCC---ceEEEEcCcEEEEEeCCCCCcCCCcEEEE
Q 010571          149 LVGSRLIIFGGEDRSRKLLNDVHFLD-LETMTWDAVEVTQTPPAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       149 ~~~~~l~~~GG~~~~~~~~~~~~~~d-~~t~~W~~~~~~g~~p~~r~~---~~~~~~~~~~l~i~GG~~~~~~~~~i~~~  224 (507)
                      .++++|.++.......  .-+||+++ .....|++.-.....+.+...   .......++.|++..+..   ...-+..|
T Consensus       151 ~~~G~L~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y  225 (230)
T TIGR01640       151 NYKGKLAVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYY  225 (230)
T ss_pred             EECCEEEEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEE
Confidence            7789888876543211  23677775 445679986544321122221   123344556677665421   01138888


Q ss_pred             ECCCC
Q 010571          225 DLQTN  229 (507)
Q Consensus       225 d~~~~  229 (507)
                      |+.++
T Consensus       226 ~~~~~  230 (230)
T TIGR01640       226 NVGEN  230 (230)
T ss_pred             eccCC
Confidence            88764

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.75  E-value=0.048  Score=54.83  Aligned_cols=240  Identities=13%  Similarity=0.102  Sum_probs=127.0

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEccc
Q 010571           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGH  109 (507)
Q Consensus        32 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~  109 (507)
                      +.++.++.||+.+.      ...++.||..+++  |+.-......        ......+.+...+.+..+++||+.+. 
T Consensus        64 sPvv~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~~v~v~~~-  128 (394)
T PRK11138         64 HPAVAYNKVYAADR------AGLVKALDADTGKEIWSVDLSEKDG--------WFSKNKSALLSGGVTVAGGKVYIGSE-  128 (394)
T ss_pred             ccEEECCEEEEECC------CCeEEEEECCCCcEeeEEcCCCccc--------ccccccccccccccEEECCEEEEEcC-
Confidence            44667999999865      2368999998874  7653221000        00000112333445667888887542 


Q ss_pred             CCCCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeec
Q 010571          110 YKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEV  185 (507)
Q Consensus       110 ~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~  185 (507)
                            ...++.||..|+  .|+....     .. ...+.+..++.+|+..+       .+.++.||+.+++  |+....
T Consensus       129 ------~g~l~ald~~tG~~~W~~~~~-----~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        129 ------KGQVYALNAEDGEVAWQTKVA-----GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLD  189 (394)
T ss_pred             ------CCEEEEEECCCCCCcccccCC-----Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCC
Confidence                  235899999876  5875431     11 11223455778777533       2369999998876  876532


Q ss_pred             CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecC--CCCCCC---cceEEEEECCEEEE
Q 010571          186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWYI  258 (507)
Q Consensus       186 ~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~v  258 (507)
                      . +....+...+-++. ++.+|+ +..+     ..++.+|+.++.  |+.....+  .....|   ...+-++.++.+|+
T Consensus       190 ~-~~~~~~~~~sP~v~-~~~v~~-~~~~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~  261 (394)
T PRK11138        190 V-PSLTLRGESAPATA-FGGAIV-GGDN-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYA  261 (394)
T ss_pred             C-CcccccCCCCCEEE-CCEEEE-EcCC-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEE
Confidence            1 11111222222333 454555 3322     457888888764  86521100  000001   11233456788887


Q ss_pred             EeccCCCCCcceEEEEEcCcC--eeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC--C
Q 010571          259 VGGGDNNNGCQETIVLNMTKL--AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR--D  334 (507)
Q Consensus       259 ~GG~~~~~~~~d~~~~d~~~~--~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~--~  334 (507)
                      .+. +     ..++.+|+.+.  .|+.-  ....       ..  . ++. ++.||+...     ...++.+|+.+.  .
T Consensus       262 ~~~-~-----g~l~ald~~tG~~~W~~~--~~~~-------~~--~-~~~-~~~vy~~~~-----~g~l~ald~~tG~~~  317 (394)
T PRK11138        262 LAY-N-----GNLVALDLRSGQIVWKRE--YGSV-------ND--F-AVD-GGRIYLVDQ-----NDRVYALDTRGGVEL  317 (394)
T ss_pred             EEc-C-----CeEEEEECCCCCEEEeec--CCCc-------cC--c-EEE-CCEEEEEcC-----CCeEEEEECCCCcEE
Confidence            642 2     25889998876  48751  1110       01  1 122 336777553     356888888654  3


Q ss_pred             CCC
Q 010571          335 IPR  337 (507)
Q Consensus       335 w~~  337 (507)
                      |..
T Consensus       318 W~~  320 (394)
T PRK11138        318 WSQ  320 (394)
T ss_pred             Ecc
Confidence            654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.71  E-value=0.071  Score=53.60  Aligned_cols=217  Identities=16%  Similarity=0.158  Sum_probs=119.2

Q ss_pred             CCeEeeCC--CCCeEEeccCC--CC---CCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeecccc
Q 010571            4 GSWHLELP--YDLWVTLPVSG--AR---PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETEL   74 (507)
Q Consensus         4 ~~~~~d~~--~~~W~~~~~~~--~~---p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~   74 (507)
                      .+++||..  .-.|+.-....  ..   +.++...+.++.++.||+.+.      ...++.||..|+  .|+.-..    
T Consensus        80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~----  149 (394)
T PRK11138         80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVA----  149 (394)
T ss_pred             eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCC----
Confidence            35788876  55687533210  00   112334445667888887543      246899999887  4865321    


Q ss_pred             ccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCC--CcccceEEEE
Q 010571           75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPV--ARGGHSVTLV  150 (507)
Q Consensus        75 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~--~r~~~~~~~~  150 (507)
                                     .....+.+..++.+|+..+       ...++.||+.+++  |+...   ..|.  .+...+-+..
T Consensus       150 ---------------~~~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~  204 (394)
T PRK11138        150 ---------------GEALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNL---DVPSLTLRGESAPATA  204 (394)
T ss_pred             ---------------CceecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecC---CCCcccccCCCCCEEE
Confidence                           1112233455788887543       2359999998885  77653   2221  1222233445


Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeecC--CCCCCCC---CCceEEEEcCcEEEEEeCCCCCcCCCcEEE
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVT--QTPPAPR---YDHSAALHANRYLIVFGGCSHSIFFNDLHV  223 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~--g~~p~~r---~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~  223 (507)
                      ++.+|+..+       ...++.+|+.+++  |......  +.....+   ...+.++ .++.+|+.+. +     ..++.
T Consensus       205 ~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-~~~~vy~~~~-~-----g~l~a  270 (394)
T PRK11138        205 FGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-VGGVVYALAY-N-----GNLVA  270 (394)
T ss_pred             CCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-ECCEEEEEEc-C-----CeEEE
Confidence            666666432       2358889988764  8653211  0000001   1122233 3666776543 2     46899


Q ss_pred             EECCCCc--EEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC--eeEE
Q 010571          224 LDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL--AWSI  283 (507)
Q Consensus       224 ~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~--~W~~  283 (507)
                      +|+.++.  |+...  +   .+   ...++.++.+|+...      ...++.+|+.+.  .|+.
T Consensus       271 ld~~tG~~~W~~~~--~---~~---~~~~~~~~~vy~~~~------~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        271 LDLRSGQIVWKREY--G---SV---NDFAVDGGRIYLVDQ------NDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             EECCCCCEEEeecC--C---Cc---cCcEEECCEEEEEcC------CCeEEEEECCCCcEEEcc
Confidence            9998875  87631  1   11   123556788888643      125889998776  4764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.40  E-value=0.11  Score=47.98  Aligned_cols=207  Identities=18%  Similarity=0.202  Sum_probs=116.4

Q ss_pred             CeEeeCCC--CCeEEeccCCCCCCccccce--EEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCc
Q 010571            5 SWHLELPY--DLWVTLPVSGARPSPRYKHA--AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADK   78 (507)
Q Consensus         5 ~~~~d~~~--~~W~~~~~~~~~p~~r~~~~--~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~   78 (507)
                      +.+||+.+  -.|..-..    + +..+..  .+..++.+|+..+      ...+++||+.+++  |+.-..        
T Consensus         5 l~~~d~~tG~~~W~~~~~----~-~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~--------   65 (238)
T PF13360_consen    5 LSALDPRTGKELWSYDLG----P-GIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLP--------   65 (238)
T ss_dssp             EEEEETTTTEEEEEEECS----S-SCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEECS--------
T ss_pred             EEEEECCCCCEEEEEECC----C-CCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeecc--------
Confidence            45777753  45765321    1 122222  3347889998843      4679999999885  544331        


Q ss_pred             cccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCC--cEEE-eecCCCCCC-CcccceEEEECCEE
Q 010571           79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGV-METSGKVPV-ARGGHSVTLVGSRL  154 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~-~~~~g~~p~-~r~~~~~~~~~~~l  154 (507)
                                 .......+..++.||+..+       .+.++.||..++  .|+. ...  ..+. ..........++.+
T Consensus        66 -----------~~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~  125 (238)
T PF13360_consen   66 -----------GPISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGDRL  125 (238)
T ss_dssp             -----------SCGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETTEE
T ss_pred             -----------ccccceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEecCEE
Confidence                       2222225777899988862       226999998877  5883 432  1111 22334444457777


Q ss_pred             EEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCC-------CceEEEEcCcEEEEEeCCCCCcCCCcEEEEE
Q 010571          155 IIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRY-------DHSAALHANRYLIVFGGCSHSIFFNDLHVLD  225 (507)
Q Consensus       155 ~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~-------~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d  225 (507)
                      |+...       ...++.+|+.+++  |.....   .+....       ..+..++.++.+|+..+..      .+..+|
T Consensus       126 ~~~~~-------~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d  189 (238)
T PF13360_consen  126 YVGTS-------SGKLVALDPKTGKLLWKYPVG---EPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVD  189 (238)
T ss_dssp             EEEET-------CSEEEEEETTTTEEEEEEESS---TT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEE
T ss_pred             EEEec-------cCcEEEEecCCCcEEEEeecC---CCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEE
Confidence            76653       3469999998875  666442   111111       1123334456777776643      266679


Q ss_pred             CCCCc--EEeeeecCCCCCCCcceE-EEEECCEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571          226 LQTNE--WSQPEIKGDLVTGRAGHA-GITIDENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       226 ~~~~~--W~~~~~~~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      ..++.  |+.. ..     .  ..+ ....++.+|+.. .     ...++.+|+.+++
T Consensus       190 ~~tg~~~w~~~-~~-----~--~~~~~~~~~~~l~~~~-~-----~~~l~~~d~~tG~  233 (238)
T PF13360_consen  190 LATGEKLWSKP-IS-----G--IYSLPSVDGGTLYVTS-S-----DGRLYALDLKTGK  233 (238)
T ss_dssp             TTTTEEEEEEC-SS--------ECECEECCCTEEEEEE-T-----TTEEEEEETTTTE
T ss_pred             CCCCCEEEEec-CC-----C--ccCCceeeCCEEEEEe-C-----CCEEEEEECCCCC
Confidence            99987  8442 11     1  112 233355666654 2     1368999998874

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.12  E-value=0.35  Score=48.28  Aligned_cols=213  Identities=13%  Similarity=0.124  Sum_probs=112.0

Q ss_pred             CCeEeeCCCC--CeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCcc
Q 010571            4 GSWHLELPYD--LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKT   79 (507)
Q Consensus         4 ~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~   79 (507)
                      .+++||+.++  .|..-...      +...+.++.++.+|+.+.      ...++.||+.++.  |+....         
T Consensus        76 ~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~---------  134 (377)
T TIGR03300        76 TVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGTE------KGEVIALDAEDGKELWRAKLS---------  134 (377)
T ss_pred             eEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEcC------CCEEEEEECCCCcEeeeeccC---------
Confidence            4778887644  48643311      122234445677776433      2469999998874  754321         


Q ss_pred             ccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCC-CcccceEEEECCEEEE
Q 010571           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPV-ARGGHSVTLVGSRLII  156 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~-~r~~~~~~~~~~~l~~  156 (507)
                                .....+.+..++.+|+..+       ...++.+|+.+++  |+....  ..+. .+...+.+..++.+| 
T Consensus       135 ----------~~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~--~~~~~~~~~~sp~~~~~~v~-  194 (377)
T TIGR03300       135 ----------SEVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRV--TPALTLRGSASPVIADGGVL-  194 (377)
T ss_pred             ----------ceeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccC--CCceeecCCCCCEEECCEEE-
Confidence                      1112233445777777543       2348999998774  765431  1111 122233445566554 


Q ss_pred             EcCcCCCCCccCcEEEEEcCCCc--EEEeecCCC--CCCCCC--CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          157 FGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQT--PPAPRY--DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       157 ~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~--~p~~r~--~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      +|..      ...++.+|+.+++  |+.......  ....+.  ..+...+.++.+|+.+..      ..++.||+.++.
T Consensus       195 ~~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~  262 (377)
T TIGR03300       195 VGFA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGR  262 (377)
T ss_pred             EECC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCc
Confidence            4432      2258999987764  764321100  000010  011222346666764432      358999998764


Q ss_pred             --EEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC--eeEE
Q 010571          231 --WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL--AWSI  283 (507)
Q Consensus       231 --W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~--~W~~  283 (507)
                        |...     .+   ...+.++.++.+|+...      ...++.+|..+.  .|+.
T Consensus       263 ~~W~~~-----~~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       263 VLWKRD-----AS---SYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKN  305 (377)
T ss_pred             EEEeec-----cC---CccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcc
Confidence              7652     11   11233455778887632      125888998765  4764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.91  E-value=0.66  Score=48.04  Aligned_cols=131  Identities=15%  Similarity=0.133  Sum_probs=68.3

Q ss_pred             ccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEE
Q 010571           29 YKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLI  105 (507)
Q Consensus        29 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv  105 (507)
                      ...+.++.++.||+...      ...++.+|+.|++  |+.-......          ...+ +.....++..+ ++||+
T Consensus        53 ~~~sPvv~~g~vy~~~~------~g~l~AlD~~tG~~~W~~~~~~~~~----------~~~~-~~~~~g~~~~~~~~V~v  115 (488)
T cd00216          53 QEGTPLVVDGDMYFTTS------HSALFALDAATGKVLWRYDPKLPAD----------RGCC-DVVNRGVAYWDPRKVFF  115 (488)
T ss_pred             cccCCEEECCEEEEeCC------CCcEEEEECCCChhhceeCCCCCcc----------cccc-ccccCCcEEccCCeEEE
Confidence            33345667899998755      2568999999874  8763322100          0000 11112234446 78887


Q ss_pred             EcccCCCCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCC---CccCcEEEEEcCCCc-
Q 010571          106 LGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETMT-  179 (507)
Q Consensus       106 ~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~---~~~~~~~~~d~~t~~-  179 (507)
                      ...       ...++.+|..|+  .|+.-......+......+.++.++.+| +|..+...   .....++.||..|++ 
T Consensus       116 ~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         116 GTF-------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             ecC-------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCCcEEEEEECCCCce
Confidence            432       235889999876  4775431100000011223344555555 44332211   124579999998764 


Q ss_pred             -EEEee
Q 010571          180 -WDAVE  184 (507)
Q Consensus       180 -W~~~~  184 (507)
                       |..-.
T Consensus       188 ~W~~~~  193 (488)
T cd00216         188 LWRFYT  193 (488)
T ss_pred             eeEeec
Confidence             87644

The alignment model contains an 8-bladed beta-propeller.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.91  E-value=0.41  Score=45.49  Aligned_cols=187  Identities=20%  Similarity=0.152  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcc
Q 010571           39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSM  117 (507)
Q Consensus        39 ~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~  117 (507)
                      .+|+.++.+     ..+.+||+.++.-...-....               .++  ..+...+ ..+|+.++.      .+
T Consensus         2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~---------------~~~--~l~~~~dg~~l~~~~~~------~~   53 (300)
T TIGR03866         2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQ---------------RPR--GITLSKDGKLLYVCASD------SD   53 (300)
T ss_pred             cEEEEecCC-----CEEEEEECCCCceEEEEECCC---------------CCC--ceEECCCCCEEEEEECC------CC
Confidence            466666633     468889998876433222110               011  1111223 456776642      23


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      .+.+||+.+++.......  .+.+   ..++..  ++.+|+.++.      .+.+..||+.+.+-...-     +.....
T Consensus        54 ~v~~~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~-----~~~~~~  117 (300)
T TIGR03866        54 TIQVIDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEI-----PVGVEP  117 (300)
T ss_pred             eEEEEECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEe-----eCCCCc
Confidence            588999998876442211  1111   122222  3356665442      236999999875432211     111112


Q ss_pred             ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  275 (507)
                      ++++...++.+++++..+.    +.++.||..+..-......+.    +..+.....++..+++++...    ..+.+||
T Consensus       118 ~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~----~~v~i~d  185 (300)
T TIGR03866       118 EGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG----GTVSVID  185 (300)
T ss_pred             ceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC----CEEEEEE
Confidence            3445555665666665432    346677877654332111111    111222333555555554222    2578899


Q ss_pred             cCcCee
Q 010571          276 MTKLAW  281 (507)
Q Consensus       276 ~~~~~W  281 (507)
                      +.+...
T Consensus       186 ~~~~~~  191 (300)
T TIGR03866       186 VATRKV  191 (300)
T ss_pred             cCccee
Confidence            887643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.87  E-value=0.29  Score=47.97  Aligned_cols=132  Identities=19%  Similarity=0.235  Sum_probs=81.8

Q ss_pred             ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCcc----CcEEEE-
Q 010571           99 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHFL-  173 (507)
Q Consensus        99 ~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~----~~~~~~-  173 (507)
                      .+++|+..+..       ..+.+||+.+..-...+   .++.+.....++.++++||++..........    ...+.+ 
T Consensus        75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~  144 (342)
T PF07893_consen   75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV  144 (342)
T ss_pred             cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence            48999999664       23789999999777555   5666666667888899999998774332110    144444 


Q ss_pred             -E--------cCCCcEEEeecCCCCCCCCCC-------ceEEEEcCcEEEE-EeCCCCCcCCCcEEEEECCCCcEEeeee
Q 010571          174 -D--------LETMTWDAVEVTQTPPAPRYD-------HSAALHANRYLIV-FGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       174 -d--------~~t~~W~~~~~~g~~p~~r~~-------~~~~~~~~~~l~i-~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                       +        .....|..+++   +|..+..       .+-+++++..|+| .-|..     .-.+.||..+.+|+++  
T Consensus       145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~--  214 (342)
T PF07893_consen  145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH--  214 (342)
T ss_pred             cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence             3        22346777653   3333222       1122334556776 33321     2379999999999996  


Q ss_pred             cCCCCCCCcceEEEE
Q 010571          237 KGDLVTGRAGHAGIT  251 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~  251 (507)
                       |++..|-.+.+-.+
T Consensus       215 -GdW~LPF~G~a~y~  228 (342)
T PF07893_consen  215 -GDWMLPFHGQAEYV  228 (342)
T ss_pred             -cceecCcCCccEEC
Confidence             77777755544333

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.82  E-value=0.041  Score=53.85  Aligned_cols=118  Identities=18%  Similarity=0.158  Sum_probs=75.3

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  115 (507)
                      .+++|+.++..      ..+.+||+.|..-...|.+..                +...-.++.++++||++.........
T Consensus        75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~----------------pk~~pisv~VG~~LY~m~~~~~~~~~  132 (342)
T PF07893_consen   75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHS----------------PKRCPISVSVGDKLYAMDRSPFPEPA  132 (342)
T ss_pred             cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCC----------------CCcceEEEEeCCeEEEeeccCccccc
Confidence            48899999763      448899999988877666542                33344677779999999876544221


Q ss_pred             c----ceEEEE--EC--------CCCcEEEeecCCCCCCCcc-------cceEEEE-CCEEEE-EcCcCCCCCccCcEEE
Q 010571          116 S----MIVRFI--DL--------ETNLCGVMETSGKVPVARG-------GHSVTLV-GSRLII-FGGEDRSRKLLNDVHF  172 (507)
Q Consensus       116 ~----~~~~~~--d~--------~t~~W~~~~~~g~~p~~r~-------~~~~~~~-~~~l~~-~GG~~~~~~~~~~~~~  172 (507)
                      .    ..++.+  ++        .+-.|..++   ++|..+.       -.+.+++ +..||| .-|..      ...+.
T Consensus       133 ~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTys  203 (342)
T PF07893_consen  133 GRPDFPCFEALVYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYS  203 (342)
T ss_pred             cCccceeEEEeccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEE
Confidence            1    134444  31        223677776   3343322       2344455 557888 43321      24999


Q ss_pred             EEcCCCcEEEee
Q 010571          173 LDLETMTWDAVE  184 (507)
Q Consensus       173 ~d~~t~~W~~~~  184 (507)
                      ||+.+.+|+..-
T Consensus       204 fDt~~~~W~~~G  215 (342)
T PF07893_consen  204 FDTESHEWRKHG  215 (342)
T ss_pred             EEcCCcceeecc
Confidence            999999999984

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.75  E-value=0.71  Score=46.00  Aligned_cols=230  Identities=16%  Similarity=0.105  Sum_probs=118.7

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG  108 (507)
                      .+.++.++.+|+.+.      ...++.||+.+++  |+.--..                   ....+.+..++.+|+.+.
T Consensus        59 ~~p~v~~~~v~v~~~------~g~v~a~d~~tG~~~W~~~~~~-------------------~~~~~p~v~~~~v~v~~~  113 (377)
T TIGR03300        59 LQPAVAGGKVYAADA------DGTVVALDAETGKRLWRVDLDE-------------------RLSGGVGADGGLVFVGTE  113 (377)
T ss_pred             cceEEECCEEEEECC------CCeEEEEEccCCcEeeeecCCC-------------------CcccceEEcCCEEEEEcC
Confidence            455667888887754      2469999998875  7542211                   112233444677776442


Q ss_pred             cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEee
Q 010571          109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  184 (507)
Q Consensus       109 ~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~  184 (507)
                             ...++.||+.+++  |+...     +.. ...+.+..++.+|+..+       ...++.||+.+++  |+...
T Consensus       114 -------~g~l~ald~~tG~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       114 -------KGEVIALDAEDGKELWRAKL-----SSE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             -------CCEEEEEECCCCcEeeeecc-----Cce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEcc
Confidence                   2359999998774  76542     111 11223345677776532       2359999998764  76543


Q ss_pred             cCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecC--CCCCCC---cceEEEEECCEEE
Q 010571          185 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKG--DLVTGR---AGHAGITIDENWY  257 (507)
Q Consensus       185 ~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~--~~p~~r---~~~~~~~~~~~l~  257 (507)
                      .. +....+...+.+.. ++ .+++|..+     ..++.+|+.++.  |+.....+  .....+   ...+.++.++.+|
T Consensus       174 ~~-~~~~~~~~~sp~~~-~~-~v~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy  245 (377)
T TIGR03300       174 VT-PALTLRGSASPVIA-DG-GVLVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY  245 (377)
T ss_pred             CC-CceeecCCCCCEEE-CC-EEEEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence            21 10011222233334 45 34455432     358899987764  76421100  000001   1122334566777


Q ss_pred             EEeccCCCCCcceEEEEEcCcC--eeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC--
Q 010571          258 IVGGGDNNNGCQETIVLNMTKL--AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR--  333 (507)
Q Consensus       258 v~GG~~~~~~~~d~~~~d~~~~--~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~--  333 (507)
                      +... +     ..++.||+.+.  .|..-  ...        . ...++.  ++.||+...     ...++.+|..+.  
T Consensus       246 ~~~~-~-----g~l~a~d~~tG~~~W~~~--~~~--------~-~~p~~~--~~~vyv~~~-----~G~l~~~d~~tG~~  301 (377)
T TIGR03300       246 AVSY-Q-----GRVAALDLRSGRVLWKRD--ASS--------Y-QGPAVD--DNRLYVTDA-----DGVVVALDRRSGSE  301 (377)
T ss_pred             EEEc-C-----CEEEEEECCCCcEEEeec--cCC--------c-cCceEe--CCEEEEECC-----CCeEEEEECCCCcE
Confidence            6532 1     25888998765  47641  110        0 111122  236776542     346888887554  


Q ss_pred             CCCC
Q 010571          334 DIPR  337 (507)
Q Consensus       334 ~w~~  337 (507)
                      .|..
T Consensus       302 ~W~~  305 (377)
T TIGR03300       302 LWKN  305 (377)
T ss_pred             EEcc
Confidence            3554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.66  E-value=0.53  Score=43.29  Aligned_cols=208  Identities=19%  Similarity=0.256  Sum_probs=113.8

Q ss_pred             ceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCcccee--eEEECCEEEEEcccCCCCCCcceEEEEECCCCc-
Q 010571           54 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHC--MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-  128 (507)
Q Consensus        54 ~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~-  128 (507)
                      .+..+|+.+++  |+.-.  ..                +..+..  .+..++.+|+..+       ...++.||..+++ 
T Consensus         4 ~l~~~d~~tG~~~W~~~~--~~----------------~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~   58 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDL--GP----------------GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKV   58 (238)
T ss_dssp             EEEEEETTTTEEEEEEEC--SS----------------SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEE
T ss_pred             EEEEEECCCCCEEEEEEC--CC----------------CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence            57889998874  76622  10                122222  3447899999842       4469999998885 


Q ss_pred             -EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEE-eecCCCCCCCCCCceEEEEcCc
Q 010571          129 -CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDA-VEVTQTPPAPRYDHSAALHANR  204 (507)
Q Consensus       129 -W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~-~~~~g~~p~~r~~~~~~~~~~~  204 (507)
                       |+.-.     +.+... ..+..++.+|+..+       .+.++.||+.+++  |+. ....  .+.+........+.++
T Consensus        59 ~W~~~~-----~~~~~~-~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~~  123 (238)
T PF13360_consen   59 LWRFDL-----PGPISG-APVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSS--PPAGVRSSSSPAVDGD  123 (238)
T ss_dssp             EEEEEC-----SSCGGS-GEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SS--CTCSTB--SEEEEETT
T ss_pred             EEEeec-----cccccc-eeeecccccccccc-------eeeeEecccCCcceeeeeccccc--cccccccccCceEecC
Confidence             55442     222222 24677888888762       2269999987764  884 4321  1212222223333466


Q ss_pred             EEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecCCCCCCC--------cceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571          205 YLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGR--------AGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       205 ~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r--------~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  274 (507)
                      .+|+...      ...++.+|+.++.  |....   ..+...        .....++.++.+|+..+..      .+..+
T Consensus       124 ~~~~~~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~  188 (238)
T PF13360_consen  124 RLYVGTS------SGKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAV  188 (238)
T ss_dssp             EEEEEET------CSEEEEEETTTTEEEEEEES---STT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEE
T ss_pred             EEEEEec------cCcEEEEecCCCcEEEEeec---CCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEE
Confidence            4555443      2579999999875  77642   121110        1122233356777765422      15666


Q ss_pred             EcCcCe--eEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          275 NMTKLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       275 d~~~~~--W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      |..+..  |+. + +..         .. ......++.||+.. .    ...++.+|+.+.
T Consensus       189 d~~tg~~~w~~-~-~~~---------~~-~~~~~~~~~l~~~~-~----~~~l~~~d~~tG  232 (238)
T PF13360_consen  189 DLATGEKLWSK-P-ISG---------IY-SLPSVDGGTLYVTS-S----DGRLYALDLKTG  232 (238)
T ss_dssp             ETTTTEEEEEE-C-SS----------EC-ECEECCCTEEEEEE-T----TTEEEEEETTTT
T ss_pred             ECCCCCEEEEe-c-CCC---------cc-CCceeeCCEEEEEe-C----CCEEEEEECCCC
Confidence            988886  844 2 221         11 11223344666655 2    367899998765

...

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.62  E-value=0.36  Score=47.45  Aligned_cols=215  Identities=23%  Similarity=0.318  Sum_probs=108.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      +|.|+..|+.     ...|.+||..+..-  +-.+..           +..|  ...--.+..++.+++.|+...     
T Consensus        79 DG~LlaaGD~-----sG~V~vfD~k~r~i--LR~~~a-----------h~ap--v~~~~f~~~d~t~l~s~sDd~-----  133 (487)
T KOG0310|consen   79 DGRLLAAGDE-----SGHVKVFDMKSRVI--LRQLYA-----------HQAP--VHVTKFSPQDNTMLVSGSDDK-----  133 (487)
T ss_pred             CCeEEEccCC-----cCcEEEeccccHHH--HHHHhh-----------ccCc--eeEEEecccCCeEEEecCCCc-----
Confidence            5777777773     34588899555211  111110           1111  111223345899999987433     


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~  195 (507)
                       .+..+|..+.. ......|.-- .....++...++.|++-||+++.      |-.||+.+. .|..--.. ..|.    
T Consensus       134 -v~k~~d~s~a~-v~~~l~~htD-YVR~g~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~elnh-g~pV----  199 (487)
T KOG0310|consen  134 -VVKYWDLSTAY-VQAELSGHTD-YVRCGDISPANDHIVVTGSYDGK------VRLWDTRSLTSRVVELNH-GCPV----  199 (487)
T ss_pred             -eEEEEEcCCcE-EEEEecCCcc-eeEeeccccCCCeEEEecCCCce------EEEEEeccCCceeEEecC-CCce----
Confidence             24455655554 2322222211 22222344567899999998753      777787666 44332211 2222    


Q ss_pred             ceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcce----EEEEE--CCEEEEEeccCCCCCc
Q 010571          196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH----AGITI--DENWYIVGGGDNNNGC  268 (507)
Q Consensus       196 ~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~----~~~~~--~~~l~v~GG~~~~~~~  268 (507)
                      -.++.+++ ..|...||       |.+-++|+.++        +.++..+..|    ++..+  ++.-++-||.+++   
T Consensus       200 e~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~---  261 (487)
T KOG0310|consen  200 ESVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH---  261 (487)
T ss_pred             eeEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEEEeecCCceEeecccccc---
Confidence            13444445 55566666       66777777643        2333344434    12222  3456667776554   


Q ss_pred             ceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC
Q 010571          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  319 (507)
Q Consensus       269 ~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~  319 (507)
                        +-+||  +..|+.+..+.-+.|      -+...+.+ ++.-+++|..++
T Consensus       262 --VKVfd--~t~~Kvv~s~~~~~p------vLsiavs~-dd~t~viGmsnG  301 (487)
T KOG0310|consen  262 --VKVFD--TTNYKVVHSWKYPGP------VLSIAVSP-DDQTVVIGMSNG  301 (487)
T ss_pred             --eEEEE--ccceEEEEeeecccc------eeeEEecC-CCceEEEecccc
Confidence              67888  444555544422211      22233333 445667787654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.60  E-value=0.14  Score=48.21  Aligned_cols=124  Identities=12%  Similarity=0.125  Sum_probs=74.6

Q ss_pred             EEcccCCCCC--CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEE
Q 010571          105 ILGGHYKKSS--DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWD  181 (507)
Q Consensus       105 v~GG~~~~~~--~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~  181 (507)
                      ++||.-....  ....+..||+.+.+|..+..   --.+ .-..+... +++||+.|-....+.....+-.||..+.+|.
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~   77 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---GISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS   77 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---CceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence            4555433322  46789999999999998862   2111 12334444 5678777766544433556899999999999


Q ss_pred             EeecC--CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeee
Q 010571          182 AVEVT--QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       182 ~~~~~--g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      .+...  ..+|.+....+........+++.|..  ..-..-+..|  ...+|..+..
T Consensus        78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             ecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence            88752  24455543222222234457777765  2223446666  4668998743

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.60  E-value=0.014  Score=62.00  Aligned_cols=99  Identities=19%  Similarity=0.304  Sum_probs=61.0

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE  470 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e  470 (507)
                      ...|..+.+.++..++..++..++|+.+|..+...-.....+|++.+.++++++.++.++....   ++..+.++.+|++
T Consensus       420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR---q~DKq~l~~LEkr  496 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR---QQDKQSLQQLEKR  496 (697)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence            4456666666777777777777788888776666555555666666666666666555444322   2333444466666


Q ss_pred             HHHHHHhHHHHHHHHHHhhccc
Q 010571          471 VQILRQQKSAFEQEMERATSVQ  492 (507)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~  492 (507)
                      +.+.++++..+|+++.+++...
T Consensus       497 L~eE~~~R~~lEkQL~eErk~r  518 (697)
T PF09726_consen  497 LAEERRQRASLEKQLQEERKAR  518 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666555433

; GO: 0016021 integral to membrane

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.45  E-value=0.054  Score=45.40  Aligned_cols=19  Identities=16%  Similarity=0.289  Sum_probs=7.4

Q ss_pred             hhhhhHHHHHHhhccchhh
Q 010571          411 ENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~  429 (507)
                      +...|+.+++.++.++...
T Consensus        36 EI~sL~~K~~~lE~eld~~   54 (143)
T PF12718_consen   36 EITSLQKKNQQLEEELDKL   54 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.33  E-value=0.89  Score=42.22  Aligned_cols=189  Identities=14%  Similarity=0.083  Sum_probs=100.8

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      ..|.+|+....-..+..    |.   ..+++..  ++.+|+...       ..+.++|+.++.++.+.....        
T Consensus        23 ~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~--------   80 (246)
T PF08450_consen   23 RIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPD--------   80 (246)
T ss_dssp             EEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEET--------
T ss_pred             EEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccC--------
Confidence            35677777776655542    22   2333333  677777754       345677999999988876531        


Q ss_pred             CCccCCCCCccceeeEEECCEEEEEcccCCCCCCc--ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEE
Q 010571           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS--MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIF  157 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~  157 (507)
                         ...+..+..-.++.-++.||+.--........  ..++++++. ++...+..  .+.  .. ..++.- ++ .||+.
T Consensus        81 ---~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~--~p-NGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   81 ---GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG--FP-NGIAFSPDGKTLYVA  151 (246)
T ss_dssp             ---TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES--SE-EEEEEETTSSEEEEE
T ss_pred             ---CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc--cc-cceEECCcchheeec
Confidence               01123344444555578888754322222212  579999999 66665542  111  11 123332 33 56663


Q ss_pred             cCcCCCCCccCcEEEEEcCC--CcEEEeecCCCCCCCC-CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          158 GGEDRSRKLLNDVHFLDLET--MTWDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t--~~W~~~~~~g~~p~~r-~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      --      ..+.++.|++..  ..+.........+... .--.+++-.++.||+..-.     .+.|++||+.......+
T Consensus       152 ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i  220 (246)
T PF08450_consen  152 DS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREI  220 (246)
T ss_dssp             ET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEE
T ss_pred             cc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEE
Confidence            21      345699999863  3344433221222221 1224555567778886321     15799999985555555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.26  E-value=0.028  Score=59.77  Aligned_cols=17  Identities=18%  Similarity=0.178  Sum_probs=9.1

Q ss_pred             eEEEECCCCceeEeeec
Q 010571           55 VQVFDLRSLAWSNLRLE   71 (507)
Q Consensus        55 ~~~~d~~t~~W~~~~~~   71 (507)
                      +++|--.+-+|..++.+
T Consensus       129 ~~~~~e~~~~~~~~~~~  145 (697)
T PF09726_consen  129 LFVYVEASVRLKDLKSM  145 (697)
T ss_pred             HHHHHHHHHhhcccCCC
Confidence            44555555566655543

; GO: 0016021 integral to membrane

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.20  E-value=0.13  Score=48.38  Aligned_cols=123  Identities=17%  Similarity=0.239  Sum_probs=71.6

Q ss_pred             EEcCc-CCCCC-ccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc-CCCcEEEEECCCCcEE
Q 010571          156 IFGGE-DRSRK-LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWS  232 (507)
Q Consensus       156 ~~GG~-~~~~~-~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~-~~~~i~~~d~~~~~W~  232 (507)
                      ++||. ...+. .++.+=.||+.+.+|..+...   ..+. -..+....++.||+.|-...+. ....+-.||..+.+|.
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~---i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~   77 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG---ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS   77 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCCC---ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence            34553 43333 578899999999999988631   1111 1223334567677777654433 4566899999999998


Q ss_pred             eeeec--CCCCCCCcceEEEEEC-CEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          233 QPEIK--GDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       233 ~~~~~--~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      .+...  ..+|.|-........+ +.+++.|..  .....-+..|  +..+|..+..
T Consensus        78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             ecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence            87541  2355553222222223 356666654  2222234444  5778988765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.17  E-value=0.46  Score=46.52  Aligned_cols=153  Identities=16%  Similarity=0.131  Sum_probs=72.2

Q ss_pred             cccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeE-E-E-CCEEE
Q 010571           28 RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV-K-W-GTKLL  104 (507)
Q Consensus        28 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~-~-~~~iy  104 (507)
                      -.-++++..+.-.|++||.    ...++|++.+.|+.--.+-.                   +.+..-.+ . . ++..+
T Consensus        82 g~v~al~s~n~G~~l~ag~----i~g~lYlWelssG~LL~v~~-------------------aHYQ~ITcL~fs~dgs~i  138 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGT----ISGNLYLWELSSGILLNVLS-------------------AHYQSITCLKFSDDGSHI  138 (476)
T ss_pred             cceeeeecCCCceEEEeec----ccCcEEEEEeccccHHHHHH-------------------hhccceeEEEEeCCCcEE
Confidence            3456677777778888872    23468899888886432221                   11111111 1 1 67777


Q ss_pred             EEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC-cccceEEEECCEEEEEcCcCCC---CCccCcEEEEEcCCCcE
Q 010571          105 ILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRS---RKLLNDVHFLDLETMTW  180 (507)
Q Consensus       105 v~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~~~~l~~~GG~~~~---~~~~~~~~~~d~~t~~W  180 (507)
                      +.||.++.      |.+|.+.+-- .......+.|.. ...|++.. -+--.=+||.+.-   ...-..+-+||+..+.-
T Consensus       139 iTgskDg~------V~vW~l~~lv-~a~~~~~~~p~~~f~~HtlsI-TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L  210 (476)
T KOG0646|consen  139 ITGSKDGA------VLVWLLTDLV-SADNDHSVKPLHIFSDHTLSI-TDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL  210 (476)
T ss_pred             EecCCCcc------EEEEEEEeec-ccccCCCccceeeeccCccee-EEEEecCCCccceEEEecCCceEEEEEecccee
Confidence            77775443      4444322210 000000122222 12233322 2222223432210   01123577788877743


Q ss_pred             EEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc
Q 010571          181 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI  216 (507)
Q Consensus       181 ~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~  216 (507)
                      -.-     ...|+.-+++++-..++.+.+|+..+..
T Consensus       211 Llt-----i~fp~si~av~lDpae~~~yiGt~~G~I  241 (476)
T KOG0646|consen  211 LLT-----ITFPSSIKAVALDPAERVVYIGTEEGKI  241 (476)
T ss_pred             eEE-----EecCCcceeEEEcccccEEEecCCcceE
Confidence            221     2234555667766666677777766543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.10  E-value=0.078  Score=44.46  Aligned_cols=28  Identities=25%  Similarity=0.222  Sum_probs=10.2

Q ss_pred             HHHHHhhHhhhhhhhhhHHHHHHHHHHH
Q 010571          433 LSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      +..++..++.++..+.+++..+.+....
T Consensus        37 I~sL~~K~~~lE~eld~~~~~l~~~k~~   64 (143)
T PF12718_consen   37 ITSLQKKNQQLEEELDKLEEQLKEAKEK   64 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.03  E-value=0.094  Score=53.25  Aligned_cols=29  Identities=31%  Similarity=0.338  Sum_probs=12.8

Q ss_pred             HHHHHhhHhhhhhhhhhHHHHHHHHHHHH
Q 010571          433 LSSVQGQLVAERSRCFKLEAQIAELQKML  461 (507)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~e~~~~e~~~~~  461 (507)
                      ...+..++...+.++.++++.+..+.++.
T Consensus       208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  208 RESLKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334445555555554444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=96.02  E-value=2  Score=43.38  Aligned_cols=184  Identities=10%  Similarity=-0.001  Sum_probs=92.9

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++.-..+.....                .... ....-+ +.|++......    ...++.+|+.++....
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~----------------~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~  272 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPG----------------MNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTR  272 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCC----------------Cccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEE
Confidence            569999999887655443221                1111 112223 45665533221    3469999999887776


Q ss_pred             eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      +...   +..... ....-++ +|++......    ...++.+|+.+..+..+...+     ..........++..+++.
T Consensus       273 l~~~---~~~~~~-~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       273 LTNG---PGIDTE-PSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             CCCC---CCCCCC-EEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEE
Confidence            6421   111111 1111233 5555433221    247999999988887775322     222233334455455555


Q ss_pred             CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      ....  ....++.+|+.+..++.+....     .........++..+++....+.  ...+++++....
T Consensus       340 ~~~~--~~~~i~~~d~~~~~~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~~--~~~l~~~~~~g~  399 (417)
T TIGR02800       340 HREG--GGFNIAVMDLDGGGERVLTDTG-----LDESPSFAPNGRMILYATTRGG--RGVLGLVSTDGR  399 (417)
T ss_pred             EccC--CceEEEEEeCCCCCeEEccCCC-----CCCCceECCCCCEEEEEEeCCC--cEEEEEEECCCc
Confidence            4432  2347999999887766553211     1111223335554444432221  235666665443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.74  E-value=2.8  Score=42.77  Aligned_cols=192  Identities=9%  Similarity=0.004  Sum_probs=96.0

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++....+....                 .........-+ .+|++......    ..+++.+|+.++....
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~  284 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFP-----------------GMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTR  284 (435)
T ss_pred             CEEEEEECCCCcEEEeecCC-----------------CcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEE
Confidence            57999999998876665332                 11111122223 45544432221    3469999999987776


Q ss_pred             eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      +..   .+.. .......-++ +|++.....+    ...++.+|+.+.....+...    .... .......++..+++.
T Consensus       285 Lt~---~~~~-~~~~~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~----~~~~-~~~~~SpdG~~ia~~  351 (435)
T PRK05137        285 LTD---SPAI-DTSPSYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFG----GGRY-STPVWSPRGDLIAFT  351 (435)
T ss_pred             ccC---CCCc-cCceeEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecC----CCcc-cCeEECCCCCEEEEE
Confidence            642   1211 1111122233 4544322211    34799999988777766521    1111 122233343333333


Q ss_pred             CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCC-cceEEEEEcCcCeeEEec
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG-CQETIVLNMTKLAWSILT  285 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~-~~d~~~~d~~~~~W~~~~  285 (507)
                      .....  ...++.+|+.+...+.+.. +    .........-+++.+++-....... ...++++|++...-..++
T Consensus       352 ~~~~~--~~~i~~~d~~~~~~~~lt~-~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        352 KQGGG--QFSIGVMKPDGSGERILTS-G----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             EcCCC--ceEEEEEECCCCceEeccC-C----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            22211  2478899987766655421 1    1112222333555555543322211 246899998877666554

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.71  E-value=0.2  Score=44.65  Aligned_cols=44  Identities=27%  Similarity=0.365  Sum_probs=17.4

Q ss_pred             hHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHH
Q 010571          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ  458 (507)
Q Consensus       415 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~  458 (507)
                      +...+...+.......++++..++.++..++...++..++.++.
T Consensus       107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444444444444444444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.71  E-value=1.7  Score=40.22  Aligned_cols=202  Identities=16%  Similarity=0.112  Sum_probs=110.4

Q ss_pred             eeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEE
Q 010571           94 HCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        94 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~  172 (507)
                      -.... .++.||.--|..+.    +.+..+|+.|++-....   ++|..-.+=.++.++++||..--.      .+..+.
T Consensus        48 QGL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~  114 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFV  114 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEE
T ss_pred             ccEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEE
Confidence            34444 57888887776653    46999999999876655   677777777899999999998654      446899


Q ss_pred             EEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeec-CCCCCCCcceEEE
Q 010571          173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK-GDLVTGRAGHAGI  250 (507)
Q Consensus       173 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~-~~~p~~r~~~~~~  250 (507)
                      ||..+.+  .+.   ..+.+..+-+++.. +..|++.-|.      +.++.+||.+..-.. +.+. ...|..+-. -+-
T Consensus       115 yd~~tl~--~~~---~~~y~~EGWGLt~d-g~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN-ELE  181 (264)
T PF05096_consen  115 YDPNTLK--KIG---TFPYPGEGWGLTSD-GKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSNLN-ELE  181 (264)
T ss_dssp             EETTTTE--EEE---EEE-SSS--EEEEC-SSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE---EE-EEE
T ss_pred             Eccccce--EEE---EEecCCcceEEEcC-CCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCCcE-eEE
Confidence            9998643  332   22334567777754 5558888774      679999998764333 2221 112222211 233


Q ss_pred             EECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCC--------CCCCCCCceEEEEEcCceEEEEEcccCCCcC
Q 010571          251 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN--------PLASEGLSVCSAIIEGEHHLVAFGGYNGKYN  322 (507)
Q Consensus       251 ~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~--------p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~  322 (507)
                      .+++.||.=     --..+.+.+.|+.++.-..+-++.+..        ..+.....-..+..+..+.++|.|=    ..
T Consensus       182 ~i~G~IyAN-----VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK----~W  252 (264)
T PF05096_consen  182 YINGKIYAN-----VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK----LW  252 (264)
T ss_dssp             EETTEEEEE-----ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET----T-
T ss_pred             EEcCEEEEE-----eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC----CC
Confidence            345555421     112356889999998754432221110        0111222223333345678888764    34


Q ss_pred             CeEEEEEC
Q 010571          323 NEVFVMRL  330 (507)
Q Consensus       323 ~~v~~~~~  330 (507)
                      ..+|...+
T Consensus       253 p~lyeV~l  260 (264)
T PF05096_consen  253 PKLYEVKL  260 (264)
T ss_dssp             SEEEEEEE
T ss_pred             CceEEEEE
Confidence            55655543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.62  E-value=3.5  Score=43.09  Aligned_cols=130  Identities=13%  Similarity=0.068  Sum_probs=70.4

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG  108 (507)
                      .+-++.++.||+...      ...++.+|..|+  .|+.-......     ..   ............+..+++||+...
T Consensus        63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~-----~~---~~~~~~~~~rg~av~~~~v~v~t~  128 (527)
T TIGR03075        63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDD-----VI---PVMCCDVVNRGVALYDGKVFFGTL  128 (527)
T ss_pred             cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcc-----cc---cccccccccccceEECCEEEEEcC
Confidence            445667899998654      236999999987  48764432110     00   000001122334566888887432


Q ss_pred             cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCC-cccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEe
Q 010571          109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  183 (507)
Q Consensus       109 ~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~  183 (507)
                             ...++.+|..|++  |+...  ...... ....+-++.++.||+-..... ......+..||..|++  |+.-
T Consensus       129 -------dg~l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       129 -------DARLVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             -------CCEEEEEECCCCCEEeeccc--ccccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEecc
Confidence                   2348999998874  66532  122111 112234456777776432211 1123469999998875  7655


Q ss_pred             e
Q 010571          184 E  184 (507)
Q Consensus       184 ~  184 (507)
                      .
T Consensus       199 ~  199 (527)
T TIGR03075       199 T  199 (527)
T ss_pred             C
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.56  E-value=0.4  Score=39.71  Aligned_cols=78  Identities=13%  Similarity=0.216  Sum_probs=46.3

Q ss_pred             hhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ...+..+..+....+..+.....+.+..+..++.++.+++....++.....++...++.-..+.+.+++++++...+.
T Consensus        23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   23 EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555555556666666666666666666666666666666665555555555555555555554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.51  E-value=0.19  Score=48.05  Aligned_cols=17  Identities=24%  Similarity=0.444  Sum_probs=6.8

Q ss_pred             HHHHHHHhHHHHHHHHH
Q 010571          470 EVQILRQQKSAFEQEME  486 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~~  486 (507)
                      .++....+++.++.++.
T Consensus       240 ~I~~~~~~k~e~~~~I~  256 (312)
T smart00787      240 KIEDLTNKKSELNTEIA  256 (312)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333334444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.49  E-value=0.14  Score=49.88  Aligned_cols=16  Identities=13%  Similarity=0.362  Sum_probs=10.1

Q ss_pred             ceEEEEEcCcC-eeEEe
Q 010571          269 QETIVLNMTKL-AWSIL  284 (507)
Q Consensus       269 ~d~~~~d~~~~-~W~~~  284 (507)
                      ..+|.+++.+. .|...
T Consensus       267 ~H~yalel~tqrVWDYA  283 (493)
T KOG0804|consen  267 GHCYALELETQRVWDYA  283 (493)
T ss_pred             cceEEEeecceeeeecc
Confidence            35777777665 47654

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.46  E-value=0.57  Score=45.93  Aligned_cols=154  Identities=17%  Similarity=0.151  Sum_probs=86.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      .--+.+.+|.++.   -.+|..|-.++.  .+..+.-             .-.|......+..|....+++|..      
T Consensus       224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l-------------~~fPi~~a~f~p~G~~~i~~s~rr------  279 (514)
T KOG2055|consen  224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHL-------------EKFPIQKAEFAPNGHSVIFTSGRR------  279 (514)
T ss_pred             CCceEEEecCCCc---EEEEEecCccCh--hheeeee-------------ccCccceeeecCCCceEEEecccc------
Confidence            5568888886633   124444444444  2222210             011233333333344377777753      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~  196 (507)
                      .-++.||+.+.+-.++.+...++......--+...+.++++-|..      .-|+.+...|+.|..--   .++.....+
T Consensus       280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~---KieG~v~~~  350 (514)
T KOG2055|consen  280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSF---KIEGVVSDF  350 (514)
T ss_pred             eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhhee---eeccEEeeE
Confidence            248999999999988875444443222223344455566666643      35888888888875432   223223333


Q ss_pred             eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       197 ~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      +... .+..|++.||.+      .+|++|+.++.
T Consensus       351 ~fsS-dsk~l~~~~~~G------eV~v~nl~~~~  377 (514)
T KOG2055|consen  351 TFSS-DSKELLASGGTG------EVYVWNLRQNS  377 (514)
T ss_pred             EEec-CCcEEEEEcCCc------eEEEEecCCcc
Confidence            3332 345688888863      69999998874

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.42  E-value=0.26  Score=47.86  Aligned_cols=12  Identities=33%  Similarity=0.338  Sum_probs=4.4

Q ss_pred             HHHHhHHHHHHH
Q 010571          473 ILRQQKSAFEQE  484 (507)
Q Consensus       473 ~~~~~~~~~~~~  484 (507)
                      .+..+++.++.+
T Consensus       248 ~~~~~k~~l~~e  259 (325)
T PF08317_consen  248 ELEEQKQELLAE  259 (325)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=95.35  E-value=0.15  Score=51.78  Aligned_cols=79  Identities=14%  Similarity=0.300  Sum_probs=37.2

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA-------ELQKMLESSQTIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~-------e~~~~~~~~~~~e~e~~~~~~~~~~~~~  483 (507)
                      +..++...++.+++++.+++.++.+.+.++++++.++..+...+.       |++........|++++++..+..++|+.
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~  502 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER  502 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555554444444333332       2222223333455555555555555666


Q ss_pred             HHHHhh
Q 010571          484 EMERAT  489 (507)
Q Consensus       484 ~~~~~~  489 (507)
                      .+.+++
T Consensus       503 ~l~~l~  508 (652)
T COG2433         503 KLAELR  508 (652)
T ss_pred             HHHHHH
Confidence            655444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.31  E-value=0.2  Score=48.71  Aligned_cols=17  Identities=24%  Similarity=0.245  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHhHHHHHH
Q 010571          467 IENEVQILRQQKSAFEQ  483 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~  483 (507)
                      +..++++++.+++.+++
T Consensus       249 ~~~~k~~l~~eI~e~~~  265 (325)
T PF08317_consen  249 LEEQKQELLAEIAEAEK  265 (325)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.28  E-value=0.12  Score=49.81  Aligned_cols=43  Identities=16%  Similarity=0.298  Sum_probs=17.9

Q ss_pred             hhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHH
Q 010571          413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA  455 (507)
Q Consensus       413 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~  455 (507)
                      ..+.++++.++.+.+++.+++++.+.+.+.+.+++.+++.+..
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~   88 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE   88 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444443333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=95.27  E-value=4  Score=41.58  Aligned_cols=188  Identities=10%  Similarity=0.038  Sum_probs=95.5

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++.-..+....                 .........- +.+|++......    ..+++++|+.++....
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFR-----------------GINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTR  286 (433)
T ss_pred             cEEEEEECCCCCEEEeccCC-----------------CCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEE
Confidence            56899999888766554322                 1111111222 345554432221    2469999999987666


Q ss_pred             eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC-cEEEEE
Q 010571          132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVF  209 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~  209 (507)
                      +..   .+. ........-++ +|++.....+    ...++.+|+.+++...+...+     ..........+ +.|++.
T Consensus       287 lt~---~~~-~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        287 LTN---HFG-IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMV  353 (433)
T ss_pred             Ccc---CCC-CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEE
Confidence            542   111 11111112234 4554432221    246999999888887775322     12222333334 445444


Q ss_pred             eCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEe
Q 010571          210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~  284 (507)
                      .+.+ +  ...++++|+.++..+.+.. +.    ........-+++.+++....  .....++.++.+...=..+
T Consensus       354 ~~~~-~--~~~I~v~d~~~g~~~~Lt~-~~----~~~~p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        354 HGSG-G--QYRIAVMDLSTGSVRTLTP-GS----LDESPSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             ECCC-C--ceeEEEEECCCCCeEECCC-CC----CCCCceECCCCCEEEEEEec--CCceEEEEEECCCCceEEc
Confidence            3321 1  1378999998888876532 11    11112233356665554432  1234688888765443333

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.23  E-value=4.2  Score=41.62  Aligned_cols=187  Identities=9%  Similarity=0.040  Sum_probs=95.0

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++.-..+....                 .........- ++.|++......    ..+++.+|+.++..+.
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~-----------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~  300 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFP-----------------GINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTR  300 (448)
T ss_pred             cEEEEEECCCCCeEEecCCC-----------------CCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEE
Confidence            57999999888765554322                 1111111222 445655532221    3469999999998877


Q ss_pred             eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      +...   . .........-++ .|++......    ...++.+|+.++++..+...+.     .....+...++..++|.
T Consensus       301 lt~~---~-~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~  367 (448)
T PRK04792        301 ITRH---R-AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMV  367 (448)
T ss_pred             CccC---C-CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEE
Confidence            6521   1 111111112233 5555432221    2479999999999888753221     11222333344344443


Q ss_pred             CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEE
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  283 (507)
                      +....  ...++.+|+.++..+.+... .  ..  .......+++.+++....+  ....+++++.+ ..+..
T Consensus       368 ~~~~g--~~~I~~~dl~~g~~~~lt~~-~--~d--~~ps~spdG~~I~~~~~~~--g~~~l~~~~~~-G~~~~  430 (448)
T PRK04792        368 NRTNG--KFNIARQDLETGAMQVLTST-R--LD--ESPSVAPNGTMVIYSTTYQ--GKQVLAAVSID-GRFKA  430 (448)
T ss_pred             EecCC--ceEEEEEECCCCCeEEccCC-C--CC--CCceECCCCCEEEEEEecC--CceEEEEEECC-CCceE
Confidence            33221  24689999999887765321 1  11  1112333555555543222  22357777764 33433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.22  E-value=0.3  Score=47.66  Aligned_cols=19  Identities=21%  Similarity=0.228  Sum_probs=7.2

Q ss_pred             hHHhHHHHHhhHhhhhhhh
Q 010571          429 LSKELSSVQGQLVAERSRC  447 (507)
Q Consensus       429 ~~~e~~~~~~~~~~~~~~~  447 (507)
                      .+.+.+.+...+++.+.++
T Consensus       373 ~e~~kk~~e~k~~q~q~k~  391 (493)
T KOG0804|consen  373 LEAEKKIVERKLQQLQTKL  391 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=95.18  E-value=0.31  Score=49.01  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhcccc--cCCCceee
Q 010571          466 TIENEVQILRQQKSAFEQEMERATSVQT--QGSGGVWR  501 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  501 (507)
                      .|..++..+.+.-.++.++-..+..+.+  .+-+|.||
T Consensus       169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WG  206 (475)
T PRK10361        169 TLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWG  206 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchH
Confidence            3444444444444444444444443333  36789997

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.06  E-value=4.4  Score=40.89  Aligned_cols=147  Identities=13%  Similarity=0.123  Sum_probs=77.9

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      ..++++|+.++.-..+.   ..+..... ....-++ .|++....+.    ..+++.+|+.+.....+.....   .  .
T Consensus       214 ~~i~v~d~~~g~~~~~~---~~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~--~  280 (417)
T TIGR02800       214 PEIYVQDLATGQREKVA---SFPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---I--D  280 (417)
T ss_pred             cEEEEEECCCCCEEEee---cCCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---C--C
Confidence            46999999988766654   22222111 1112233 5655443221    3479999999888776653211   1  1


Q ss_pred             ceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571          196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  274 (507)
                      .......+ ..|++.....+   ...+|.+|+.+..+..+...+.    ........-+++.+++.....  ....++++
T Consensus       281 ~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~~----~~~~~~~spdg~~i~~~~~~~--~~~~i~~~  351 (417)
T TIGR02800       281 TEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRGG----YNASPSWSPDGDLIAFVHREG--GGFNIAVM  351 (417)
T ss_pred             CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCCC----CccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence            11122233 44444333222   2479999998888877642211    111112222455555554332  23478999


Q ss_pred             EcCcCeeEEec
Q 010571          275 NMTKLAWSILT  285 (507)
Q Consensus       275 d~~~~~W~~~~  285 (507)
                      |+.+..+..+.
T Consensus       352 d~~~~~~~~l~  362 (417)
T TIGR02800       352 DLDGGGERVLT  362 (417)
T ss_pred             eCCCCCeEEcc
Confidence            99887776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=95.05  E-value=4.7  Score=41.11  Aligned_cols=189  Identities=17%  Similarity=0.118  Sum_probs=92.1

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~  196 (507)
                      ..++++|+.++....+.   ..+..........-+..|++....+.    ..+++.+|+.++....+...   +. . ..
T Consensus       226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~-~-~~  293 (435)
T PRK05137        226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA-I-DT  293 (435)
T ss_pred             CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC-c-cC
Confidence            46999999999887765   22222221111112335554433222    34799999998887666421   11 1 11


Q ss_pred             eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEc
Q 010571          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM  276 (507)
Q Consensus       197 ~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~  276 (507)
                      ......++.-++|......  ...+|++|+.+...+.+...    ..........-+++.+++.....  ....++++|+
T Consensus       294 ~~~~spDG~~i~f~s~~~g--~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~--~~~~i~~~d~  365 (435)
T PRK05137        294 SPSYSPDGSQIVFESDRSG--SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGG--GQFSIGVMKP  365 (435)
T ss_pred             ceeEcCCCCEEEEEECCCC--CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCC--CceEEEEEEC
Confidence            1223334433334332111  25799999888777766321    11111112223444444432211  1246888998


Q ss_pred             CcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCc-CCeEEEEECCCCC
Q 010571          277 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY-NNEVFVMRLKPRD  334 (507)
Q Consensus       277 ~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~v~~~~~~~~~  334 (507)
                      .+.....+....        . .......+++..|+......+.. ...+|.+++....
T Consensus       366 ~~~~~~~lt~~~--------~-~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        366 DGSGERILTSGF--------L-VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             CCCceEeccCCC--------C-CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            776655543211        0 01111233344444433322221 2578999986543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.05  E-value=3.2  Score=39.23  Aligned_cols=263  Identities=17%  Similarity=0.180  Sum_probs=118.6

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcc
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~   79 (507)
                      |...+.||+.++.-...-..+  ..++   +++..  +..+|+.++.     .+.+.+||+.++.....-...       
T Consensus        10 d~~v~~~d~~t~~~~~~~~~~--~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~-------   72 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFPVG--QRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTLPSG-------   72 (300)
T ss_pred             CCEEEEEECCCCceEEEEECC--CCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEeccCC-------
Confidence            445678888776643332111  1122   23332  4457777652     345889999887654321111       


Q ss_pred             ccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE-ECCEEEEE
Q 010571           80 EDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIF  157 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~l~~~  157 (507)
                              ..+  ...+..- ++.+|+.++.      ...+.+||+.+..-...     .+......+++. -++.++++
T Consensus        73 --------~~~--~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~  131 (300)
T TIGR03866        73 --------PDP--ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVN  131 (300)
T ss_pred             --------CCc--cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEE
Confidence                    001  1122222 4456666542      23588999987642221     111111122222 24566666


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eee
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEI  236 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~  236 (507)
                      +..+     .+.+..||..+..-......+..|     ..+....++..+++++...    +.+.+||+.+..... +..
T Consensus       132 ~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~~~~~~~  197 (300)
T TIGR03866       132 TSET-----TNMAHFIDTKTYEIVDNVLVDQRP-----RFAEFTADGKELWVSSEIG----GTVSVIDVATRKVIKKITF  197 (300)
T ss_pred             EecC-----CCeEEEEeCCCCeEEEEEEcCCCc-----cEEEECCCCCEEEEEcCCC----CEEEEEEcCcceeeeeeee
Confidence            5432     124667787765443221111111     1233333444444444322    458899988765422 211


Q ss_pred             c-CCCCCCCcceEEEEE--CC-EEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEE
Q 010571          237 K-GDLVTGRAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLV  312 (507)
Q Consensus       237 ~-~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~  312 (507)
                      . +..+........+.+  ++ .+|+..+.+     +.+.+||..+..-  +......      +...+....+++..|+
T Consensus       198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~d~~~~~~--~~~~~~~------~~~~~~~~~~~g~~l~  264 (300)
T TIGR03866       198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVVDAKTYEV--LDYLLVG------QRVWQLAFTPDEKYLL  264 (300)
T ss_pred             cccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEEECCCCcE--EEEEEeC------CCcceEEECCCCCEEE
Confidence            1 111111111112223  33 345543322     2578888865433  2221110      1112223334445666


Q ss_pred             EEcccCCCcCCeEEEEECCCC
Q 010571          313 AFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       313 v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      +..+.    .+++.++|+...
T Consensus       265 ~~~~~----~~~i~v~d~~~~  281 (300)
T TIGR03866       265 TTNGV----SNDVSVIDVAAL  281 (300)
T ss_pred             EEcCC----CCeEEEEECCCC
Confidence            54443    346888888664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.97  E-value=0.36  Score=49.15  Aligned_cols=39  Identities=13%  Similarity=0.285  Sum_probs=16.0

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  429 (507)
                      ++.++.++.++.........+...|+..++.++.++...
T Consensus       145 lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~  183 (546)
T PF07888_consen  145 LEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQE  183 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444443333333334444444444444444433

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=94.95  E-value=1.7  Score=42.83  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=82.4

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccc--eEEEECC-EEEEEcCcCCCCCccCcEEEEEcC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGH--SVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~--~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~  176 (507)
                      .--|.+.+|.+..-    .++..|-.++.  .+.   ++-..+.-.  ++..-++ ..++++|+      -.-+|.||+.
T Consensus       224 ~~plllvaG~d~~l----rifqvDGk~N~--~lq---S~~l~~fPi~~a~f~p~G~~~i~~s~r------rky~ysyDle  288 (514)
T KOG2055|consen  224 TAPLLLVAGLDGTL----RIFQVDGKVNP--KLQ---SIHLEKFPIQKAEFAPNGHSVIFTSGR------RKYLYSYDLE  288 (514)
T ss_pred             CCceEEEecCCCcE----EEEEecCccCh--hhe---eeeeccCccceeeecCCCceEEEeccc------ceEEEEeecc
Confidence            45688888876532    36666666654  222   222111111  1112244 47777775      3458999999


Q ss_pred             CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEE
Q 010571          177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  256 (507)
Q Consensus       177 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  256 (507)
                      +.+-+.+.+....+ .++.+...+..++.++++-|..+     -|+.+...|+.|..-   -.++.....++...-+..|
T Consensus       289 ~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s---~KieG~v~~~~fsSdsk~l  359 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITS---FKIEGVVSDFTFSSDSKEL  359 (514)
T ss_pred             ccccccccCCCCcc-cchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhe---eeeccEEeeEEEecCCcEE
Confidence            99999987655444 23333343333444666666432     377777777777541   1122222222222223457


Q ss_pred             EEEeccCCCCCcceEEEEEcCcCe
Q 010571          257 YIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      +++||..      .+|++|+..+.
T Consensus       360 ~~~~~~G------eV~v~nl~~~~  377 (514)
T KOG2055|consen  360 LASGGTG------EVYVWNLRQNS  377 (514)
T ss_pred             EEEcCCc------eEEEEecCCcc
Confidence            7776632      69999998873

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=94.94  E-value=0.14  Score=44.78  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=41.5

Q ss_pred             HHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHh
Q 010571          407 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQ  477 (507)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~  477 (507)
                      ..+....+++.++++...+++++.+++++.+.+++..++++..++.+...++++++...    .|++...++...
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            33445556666666666666666666666666666666666666655555555444333    444444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.92  E-value=0.68  Score=39.40  Aligned_cols=89  Identities=18%  Similarity=0.295  Sum_probs=54.5

Q ss_pred             HHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHH
Q 010571          401 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKS  479 (507)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~  479 (507)
                      +...+.....+...++..++.++.++++.++++...+.....++.++..++..+...++++++.. .++.-..+...++-
T Consensus        57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~r  136 (151)
T PF11559_consen   57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELR  136 (151)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445556667777777777777777777766666666666666666666666666666655 34444455555555


Q ss_pred             HHHHHHHHhh
Q 010571          480 AFEQEMERAT  489 (507)
Q Consensus       480 ~~~~~~~~~~  489 (507)
                      ..+.|++.++
T Consensus       137 kke~E~~kLk  146 (151)
T PF11559_consen  137 KKEREIEKLK  146 (151)
T ss_pred             HHHHHHHHHH
Confidence            6666655443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.91  E-value=0.5  Score=45.30  Aligned_cols=17  Identities=18%  Similarity=0.223  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHhHHHHHH
Q 010571          467 IENEVQILRQQKSAFEQ  483 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~  483 (507)
                      ..+++++++.++..++.
T Consensus       244 ~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      244 LTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33344444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.89  E-value=3.2  Score=38.46  Aligned_cols=200  Identities=17%  Similarity=0.161  Sum_probs=107.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.||+..-     ....++.+|+.++.-..+...                  .  -.+++..  ++.+|+....     
T Consensus        11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~------------------~--~~G~~~~~~~g~l~v~~~~-----   60 (246)
T PF08450_consen   11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLP------------------G--PNGMAFDRPDGRLYVADSG-----   60 (246)
T ss_dssp             TTEEEEEET-----TTTEEEEEETTTTEEEEEESS------------------S--EEEEEEECTTSEEEEEETT-----
T ss_pred             CCEEEEEEc-----CCCEEEEEECCCCeEEEEecC------------------C--CceEEEEccCCEEEEEEcC-----
Confidence            567777733     235799999999876554432                  2  2334443  6888887542     


Q ss_pred             CcceEEEEECCCCcEEEeecC--CCCCCCcccceEEEECCEEEEEcCcCCCCCcc--CcEEEEEcCCCcEEEeecCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL--NDVHFLDLETMTWDAVEVTQTPP  190 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~--~~~~~~d~~t~~W~~~~~~g~~p  190 (507)
                         .+.++|+.+++++.+...  +..+..+.+-.++.-++.+|+---........  ..++++++. .+...+...  + 
T Consensus        61 ---~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~-  133 (246)
T PF08450_consen   61 ---GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L-  133 (246)
T ss_dssp             ---CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E-
T ss_pred             ---ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c-
Confidence               256779999999888742  11133333333333356766642221111112  569999998 666555421  1 


Q ss_pred             CCCCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCC--CcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCC
Q 010571          191 APRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNN  265 (507)
Q Consensus       191 ~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~  265 (507)
                        ..-.+++...++ .||+.--     ..+.|+.|++..  ..+.........+......-...+  +++||+..-.   
T Consensus       134 --~~pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---  203 (246)
T PF08450_consen  134 --GFPNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---  203 (246)
T ss_dssp             --SSEEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---
T ss_pred             --ccccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---
Confidence              111345555554 5666432     235699999863  334433221122222222334444  5788886321   


Q ss_pred             CCcceEEEEEcCcCeeEEec
Q 010571          266 NGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       266 ~~~~d~~~~d~~~~~W~~~~  285 (507)
                        ...+++||+....-..+.
T Consensus       204 --~~~I~~~~p~G~~~~~i~  221 (246)
T PF08450_consen  204 --GGRIVVFDPDGKLLREIE  221 (246)
T ss_dssp             --TTEEEEEETTSCEEEEEE
T ss_pred             --CCEEEEECCCccEEEEEc
Confidence              226899999966555554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.86  E-value=0.67  Score=41.44  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHH
Q 010571          467 IENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      ++-+.+.+.++..++++|.++
T Consensus       105 Lk~e~evL~qr~~kle~Erde  125 (201)
T PF13851_consen  105 LKWEHEVLEQRFEKLEQERDE  125 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445544443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.81  E-value=5.5  Score=40.77  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=79.9

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      ...++++|+.+++-..+.   ..+..........-+..|++....++    ..+++.+|+.+++...+....    . ..
T Consensus       241 ~~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~-~~  308 (448)
T PRK04792        241 KAEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----A-ID  308 (448)
T ss_pred             CcEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----C-Cc
Confidence            346999999988766664   22221111111112345665543322    347999999999887765311    1 11


Q ss_pred             ceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571          196 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  274 (507)
                      ...+...++ .|++.....+   ...+|.+|+.++.++.+...+..    .......-+++.+++.+...  ....++++
T Consensus       309 ~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~--g~~~I~~~  379 (448)
T PRK04792        309 TEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTN--GKFNIARQ  379 (448)
T ss_pred             cceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecC--CceEEEEE
Confidence            122233343 4444332222   25799999999988876422211    11122233444444443222  23478999


Q ss_pred             EcCcCeeEEec
Q 010571          275 NMTKLAWSILT  285 (507)
Q Consensus       275 d~~~~~W~~~~  285 (507)
                      |+.+.....+.
T Consensus       380 dl~~g~~~~lt  390 (448)
T PRK04792        380 DLETGAMQVLT  390 (448)
T ss_pred             ECCCCCeEEcc
Confidence            99988877664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.77  E-value=4.3  Score=40.97  Aligned_cols=251  Identities=16%  Similarity=0.099  Sum_probs=124.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCC--
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKK--  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~--  112 (507)
                      ++..++++=..++.-...+.++|+.++....-..                   ....++.+..  +++.+++......  
T Consensus       134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTSSEEEEEECSTTTS
T ss_pred             CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCCCEEEEEEeCcccc
Confidence            4555555533333334569999999995432111                   1222221333  3345554443332  


Q ss_pred             ---CCCcceEEEEECCCCcEE--EeecCCCCCCCcc-cceEEEE-C-CEEEEEcCcCCCCCccCcEEEEEcCCC-----c
Q 010571          113 ---SSDSMIVRFIDLETNLCG--VMETSGKVPVARG-GHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETM-----T  179 (507)
Q Consensus       113 ---~~~~~~~~~~d~~t~~W~--~~~~~g~~p~~r~-~~~~~~~-~-~~l~~~GG~~~~~~~~~~~~~~d~~t~-----~  179 (507)
                         ......++.....+..-.  .+-   ..+.... ...+..- + ..|++.-+....   .++++.+|+...     .
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~  268 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAK  268 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-S
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCC
Confidence               123557888888776543  222   2222222 2222222 3 355554333211   368999999875     7


Q ss_pred             EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc---EEeeeecCCCCCCC-cceEEEEECCE
Q 010571          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGR-AGHAGITIDEN  255 (507)
Q Consensus       180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r-~~~~~~~~~~~  255 (507)
                      |..+...    .. ..+..+...++.+||...  .+.....+..+++....   |..+-.   .+... .--.+.+.++.
T Consensus       269 ~~~l~~~----~~-~~~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~  338 (414)
T PF02897_consen  269 PKLLSPR----ED-GVEYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDY  338 (414)
T ss_dssp             EEEEEES----SS-S-EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTE
T ss_pred             cEEEeCC----CC-ceEEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCE
Confidence            8888631    11 112223233666887665  23344678889988765   764321   11121 22344455788


Q ss_pred             EEEEeccCCCCCcceEEEEEcC-cCeeEEeccCCCCCCCCCCCCceEEEE--EcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          256 WYIVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSAI--IEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       256 l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      |++.-=   ......+.++++. +..-..++.+.       .+. +....  ...+...|.+.++.  ....+|.||+.+
T Consensus       339 Lvl~~~---~~~~~~l~v~~~~~~~~~~~~~~p~-------~g~-v~~~~~~~~~~~~~~~~ss~~--~P~~~y~~d~~t  405 (414)
T PF02897_consen  339 LVLSYR---ENGSSRLRVYDLDDGKESREIPLPE-------AGS-VSGVSGDFDSDELRFSYSSFT--TPPTVYRYDLAT  405 (414)
T ss_dssp             EEEEEE---ETTEEEEEEEETT-TEEEEEEESSS-------SSE-EEEEES-TT-SEEEEEEEETT--EEEEEEEEETTT
T ss_pred             EEEEEE---ECCccEEEEEECCCCcEEeeecCCc-------ceE-EeccCCCCCCCEEEEEEeCCC--CCCEEEEEECCC
Confidence            776632   2345678899998 44444443321       121 11111  11234555566654  357899999987


Q ss_pred             CCC
Q 010571          333 RDI  335 (507)
Q Consensus       333 ~~w  335 (507)
                      .+.
T Consensus       406 ~~~  408 (414)
T PF02897_consen  406 GEL  408 (414)
T ss_dssp             TCE
T ss_pred             CCE
Confidence            654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.75  E-value=2.6  Score=39.07  Aligned_cols=154  Identities=21%  Similarity=0.162  Sum_probs=88.0

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  115 (507)
                      .++.||.--|..+   .+.+..||+.|++-.....++                ..-++=.++.++++||.+==      .
T Consensus        54 ~~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~----------------~~~FgEGit~~~d~l~qLTW------k  108 (264)
T PF05096_consen   54 DDGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLP----------------PRYFGEGITILGDKLYQLTW------K  108 (264)
T ss_dssp             ETTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-T----------------TT--EEEEEEETTEEEEEES------S
T ss_pred             CCCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECC----------------ccccceeEEEECCEEEEEEe------c
Confidence            4677777777554   367889999999865544443                35677789999999999831      2


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEE-eecCCC-CCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-VEVTQT-PPAPR  193 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~-~~~~g~-~p~~r  193 (507)
                      ....++||+.+.  +.+.   ..+.+..+-.++..+..+++--|       ++.++.+||.+.+=.. +.++.. .|..+
T Consensus       109 ~~~~f~yd~~tl--~~~~---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~  176 (264)
T PF05096_consen  109 EGTGFVYDPNTL--KKIG---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVSN  176 (264)
T ss_dssp             SSEEEEEETTTT--EEEE---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred             CCeEEEEccccc--eEEE---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECCC
Confidence            345899999875  3443   33334567777877788888776       4579999998754322 222111 11111


Q ss_pred             CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       194 ~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                       ---+..+ ++.||.     +--..+.|.+.||.++.-..
T Consensus       177 -LNELE~i-~G~IyA-----NVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  177 -LNELEYI-NGKIYA-----NVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             -EEEEEEE-TTEEEE-----EETTSSEEEEEETTT-BEEE
T ss_pred             -cEeEEEE-cCEEEE-----EeCCCCeEEEEeCCCCeEEE
Confidence             0111222 333332     11345789999999987544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.75  E-value=0.69  Score=38.32  Aligned_cols=58  Identities=12%  Similarity=0.182  Sum_probs=27.1

Q ss_pred             HHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571          407 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       407 ~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ....+...|+..+..++++++..+..++.+..+.+..++.+..++.++..+...++..
T Consensus        14 ~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L   71 (140)
T PF10473_consen   14 ESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQL   71 (140)
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555555555555555544444444444444444444444444444443333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK00178 tolB translocation protein TolB; Provisional

Probab=94.68  E-value=5.7  Score=40.36  Aligned_cols=148  Identities=13%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      ..++++|+.++.-+.+..   .+.. .......-+ ++|++....++    ..+++.+|+.++....+...   + .. .
T Consensus       223 ~~l~~~~l~~g~~~~l~~---~~g~-~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~-~  289 (430)
T PRK00178        223 PRIFVQNLDTGRREQITN---FEGL-NGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AI-D  289 (430)
T ss_pred             CEEEEEECCCCCEEEccC---CCCC-cCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CC-c
Confidence            469999999988776642   2211 111111123 35554332221    24799999999988776421   1 11 1


Q ss_pred             ceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571          196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  274 (507)
                      .......+ +.|++.....+   ...++.+|+.++.+..+...+    .........-+++.+++.....  ...+++++
T Consensus       290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~~--~~~~l~~~  360 (430)
T PRK00178        290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQD--GNFHVAAQ  360 (430)
T ss_pred             CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEccC--CceEEEEE
Confidence            12223334 34444332221   257999999988887764211    1111122223444443333221  13368999


Q ss_pred             EcCcCeeEEecc
Q 010571          275 NMTKLAWSILTS  286 (507)
Q Consensus       275 d~~~~~W~~~~~  286 (507)
                      |+.+...+.+..
T Consensus       361 dl~tg~~~~lt~  372 (430)
T PRK00178        361 DLQRGSVRILTD  372 (430)
T ss_pred             ECCCCCEEEccC
Confidence            999988877654

>PRK09039 hypothetical protein; Validated

Probab=94.65  E-value=0.44  Score=46.57  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=10.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHhHH
Q 010571          444 RSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      +.++..++++++.+++++..++
T Consensus       136 ~~~V~~L~~qI~aLr~Qla~le  157 (343)
T PRK09039        136 LAQVELLNQQIAALRRQLAALE  157 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555544444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.63  E-value=0.36  Score=43.01  Aligned_cols=55  Identities=27%  Similarity=0.392  Sum_probs=25.3

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      +..++++.+.+...++...+......++.++..++++..++....++.++.+..+
T Consensus        96 el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   96 ELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444555555555555555544444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=94.63  E-value=0.76  Score=41.09  Aligned_cols=48  Identities=25%  Similarity=0.394  Sum_probs=24.9

Q ss_pred             hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHH
Q 010571          389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV  436 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~  436 (507)
                      .++..++......+..+.....+..+|.+-++..+.+.+++++++...
T Consensus        34 eei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y   81 (201)
T PF13851_consen   34 EEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY   81 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            334444333333344444555566666666666666666665555443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.44  E-value=0.29  Score=49.41  Aligned_cols=36  Identities=14%  Similarity=0.219  Sum_probs=16.7

Q ss_pred             hhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhh
Q 010571          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC  447 (507)
Q Consensus       412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  447 (507)
                      ...+...+..+..++++.+.|++.++.++..++.++
T Consensus       289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444433

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=94.41  E-value=0.5  Score=48.13  Aligned_cols=77  Identities=22%  Similarity=0.366  Sum_probs=39.5

Q ss_pred             HHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhh---hhhhhHHHHHHHHHHHHHhHH----HHHHHH
Q 010571          399 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER---SRCFKLEAQIAELQKMLESSQ----TIENEV  471 (507)
Q Consensus       399 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~~~e~~~~e~~~~~~~~~----~~e~e~  471 (507)
                      ..++........+.+.|+..+.++++++++++.++.+.+.+.....   .+++.++..+..++++|++..    +|++++
T Consensus       425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l  504 (652)
T COG2433         425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL  504 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444556666666666666666666666666555544332   222334444444444444433    444444


Q ss_pred             HHHH
Q 010571          472 QILR  475 (507)
Q Consensus       472 ~~~~  475 (507)
                      .+++
T Consensus       505 ~~l~  508 (652)
T COG2433         505 AELR  508 (652)
T ss_pred             HHHH
Confidence            4444

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.41  E-value=3.9  Score=37.83  Aligned_cols=178  Identities=13%  Similarity=0.027  Sum_probs=96.0

Q ss_pred             eeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCcc
Q 010571            8 LELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL   85 (507)
Q Consensus         8 ~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~   85 (507)
                      +|+++..-++.+.....  +-.+.-.+++  .+.|.+.|-..  .    -=.+||.++.-+..+..              
T Consensus       129 ~dpkt~evt~f~lp~~~--a~~nlet~vfD~~G~lWFt~q~G--~----yGrLdPa~~~i~vfpaP--------------  186 (353)
T COG4257         129 LDPKTLEVTRFPLPLEH--ADANLETAVFDPWGNLWFTGQIG--A----YGRLDPARNVISVFPAP--------------  186 (353)
T ss_pred             ecCcccceEEeeccccc--CCCcccceeeCCCccEEEeeccc--c----ceecCcccCceeeeccC--------------
Confidence            45556666665532222  2233333444  34566655311  0    01567776665554432              


Q ss_pred             CCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCc-ccceEEEE--CCEEEEEcCcC
Q 010571           86 EVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR-GGHSVTLV--GSRLIIFGGED  161 (507)
Q Consensus        86 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r-~~~~~~~~--~~~l~~~GG~~  161 (507)
                         .+-.-+.+|+ -++.+|+..=      .-+-+-..|+.+..=+.++    .|.+. .+..-+..  -+.+++--   
T Consensus       187 ---qG~gpyGi~atpdGsvwyasl------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~witt---  250 (353)
T COG4257         187 ---QGGGPYGICATPDGSVWYASL------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITT---  250 (353)
T ss_pred             ---CCCCCcceEECCCCcEEEEec------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEec---
Confidence               2333334444 4888888621      1223777888888555553    33331 11111222  24566541   


Q ss_pred             CCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          162 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       162 ~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                         .-...+++||+.+..|.+.+..+.-  +|- .++-+-..+++++.     ....+.|.+||+.+.+++.+
T Consensus       251 ---wg~g~l~rfdPs~~sW~eypLPgs~--arp-ys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~  312 (353)
T COG4257         251 ---WGTGSLHRFDPSVTSWIEYPLPGSK--ARP-YSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVL  312 (353)
T ss_pred             ---cCCceeeEeCcccccceeeeCCCCC--CCc-ceeeeccCCcEEee-----ccccCceeecCcccceEEEe
Confidence               1245799999999999998754332  332 34545445556652     22347899999999999885

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.29  E-value=0.44  Score=45.89  Aligned_cols=21  Identities=14%  Similarity=0.256  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      +++++.+.+..+.+...++++
T Consensus       110 ~~~~e~~sl~~q~~~~~~~L~  130 (314)
T PF04111_consen  110 EFQEERDSLKNQYEYASNQLD  130 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.27  E-value=0.64  Score=44.40  Aligned_cols=45  Identities=18%  Similarity=0.260  Sum_probs=22.0

Q ss_pred             hhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhh
Q 010571          404 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF  448 (507)
Q Consensus       404 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  448 (507)
                      .+...+++.+..++++.+.++.+.+..+++..+..+.+.++.++.
T Consensus       110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~  154 (499)
T COG4372         110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK  154 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555555555555555544555555544444444443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=94.25  E-value=7  Score=39.57  Aligned_cols=193  Identities=8%  Similarity=0.009  Sum_probs=103.6

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      .++|++|+.++.=+.+....                 .........-+ .+|++.-....    ..++|.+|..++.++.
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~  271 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQ  271 (419)
T ss_pred             CEEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEE
Confidence            37999999988766654322                 11111222223 45655433221    3579999999999988


Q ss_pred             eecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeC
Q 010571          132 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  211 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG  211 (507)
                      +..   .+..-.......-+.+|++.....+    ...++.+|+.++....+...|.     ... ...-.++.|++...
T Consensus       272 LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~  338 (419)
T PRK04043        272 ITN---YPGIDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSR  338 (419)
T ss_pred             ccc---CCCccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEc
Confidence            752   2221111111112346666654321    3579999999998877754322     122 22223343443333


Q ss_pred             CCCCc---CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          212 CSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       212 ~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      .....   ...+++++|+.++.++.+...+     ...+-...-+++.+++-...  .....++.++.+.+.=..++.
T Consensus       339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~~  409 (419)
T PRK04043        339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFPL  409 (419)
T ss_pred             CCCcccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEeec
Confidence            22211   2358999999999998875321     22223334456655554322  233467888876654444544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=94.21  E-value=5.9  Score=38.55  Aligned_cols=238  Identities=14%  Similarity=0.058  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCCccCCceEEEECCC-CceeEeeeccccccCccccCCccCCCCCccceeeEE-E-CCEEEEEcccCCCCCC
Q 010571           39 KLYIVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-W-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        39 ~lyv~GG~~~~~~~~~~~~~d~~t-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~  115 (507)
                      .+|+..+.     ...+.+||..+ +++..+.....                ....+.++. - ++.||+.+. .     
T Consensus         3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~~----------------~~~~~~l~~spd~~~lyv~~~-~-----   55 (330)
T PRK11028          3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVDV----------------PGQVQPMVISPDKRHLYVGVR-P-----   55 (330)
T ss_pred             EEEEEcCC-----CCCEEEEEECCCCceeeeeEEec----------------CCCCccEEECCCCCEEEEEEC-C-----
Confidence            45666442     35678888864 56766654421                111112222 2 345666433 2     


Q ss_pred             cceEEEEECC-CCcEEEeecCCCCCCCcccceEEE-ECC-EEEEEcCcCCCCCccCcEEEEEcCCCc-E-EEeecCCCCC
Q 010571          116 SMIVRFIDLE-TNLCGVMETSGKVPVARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETMT-W-DAVEVTQTPP  190 (507)
Q Consensus       116 ~~~~~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~-~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~-W-~~~~~~g~~p  190 (507)
                      ...+..|++. ++.+.....   .+.+..-..++. -++ .+|+.. ..     .+.+.+|++.++. . ..+.   ..+
T Consensus        56 ~~~i~~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~  123 (330)
T PRK11028         56 EFRVLSYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIE  123 (330)
T ss_pred             CCcEEEEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---ecc
Confidence            1346667665 566665542   222111112222 234 455543 22     3468888876421 1 1121   111


Q ss_pred             CCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCc-EEeee-ecCCCCCCCcceEEEEE-C-CEEEEEeccCCC
Q 010571          191 APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPE-IKGDLVTGRAGHAGITI-D-ENWYIVGGGDNN  265 (507)
Q Consensus       191 ~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~-W~~~~-~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~  265 (507)
                      .....|.++...+ +.+|+..- .    .+.+.+||+.+.. ..... .....+....-+.++.. + ..+|+....   
T Consensus       124 ~~~~~~~~~~~p~g~~l~v~~~-~----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~---  195 (330)
T PRK11028        124 GLEGCHSANIDPDNRTLWVPCL-K----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL---  195 (330)
T ss_pred             CCCcccEeEeCCCCCEEEEeeC-C----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC---
Confidence            1122355545444 44555432 2    2578999987632 22100 00011111111122322 3 356666331   


Q ss_pred             CCcceEEEEEcC--cCeeEEe---ccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          266 NGCQETIVLNMT--KLAWSIL---TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       266 ~~~~d~~~~d~~--~~~W~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                        .+.+.+|+++  +...+.+   ..+|...+.+  ++.......+++.++|+...    ..+.+.+|++.
T Consensus       196 --~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~  258 (330)
T PRK11028        196 --NSSVDVWQLKDPHGEIECVQTLDMMPADFSDT--RWAADIHITPDGRHLYACDR----TASLISVFSVS  258 (330)
T ss_pred             --CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC--ccceeEEECCCCCEEEEecC----CCCeEEEEEEe
Confidence              2356677765  3444433   3332221112  22223334455667888532    13456666653

>PRK04922 tolB translocation protein TolB; Provisional

Probab=94.08  E-value=7.8  Score=39.47  Aligned_cols=148  Identities=15%  Similarity=0.137  Sum_probs=77.0

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~  194 (507)
                      ...++++|+.+++-..+.   ..+.... .....- +.+|++....++    ..+++.+|+.++....+...   + . .
T Consensus       227 ~~~l~~~dl~~g~~~~l~---~~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~-~  293 (433)
T PRK04922        227 RSAIYVQDLATGQRELVA---SFRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-G-I  293 (433)
T ss_pred             CcEEEEEECCCCCEEEec---cCCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-C-C
Confidence            346999999998877664   2222111 111122 335554432222    24799999998887665421   1 1 1


Q ss_pred             CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCE-EEEEeccCCCCCcceEEE
Q 010571          195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN-WYIVGGGDNNNGCQETIV  273 (507)
Q Consensus       195 ~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~d~~~  273 (507)
                      ........++..++|.....+  ...+|.+|+.++..+.+...+..    .......-+++ |++..+ .+  ....+++
T Consensus       294 ~~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g~~~~lt~~g~~----~~~~~~SpDG~~Ia~~~~-~~--~~~~I~v  364 (433)
T PRK04922        294 DTEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGGSAERLTFQGNY----NARASVSPDGKKIAMVHG-SG--GQYRIAV  364 (433)
T ss_pred             ccceEECCCCCEEEEEECCCC--CceEEEEECCCCCeEEeecCCCC----ccCEEECCCCCEEEEEEC-CC--CceeEEE
Confidence            122333344444444322111  25799999988888776432211    11112222444 444433 21  2237899


Q ss_pred             EEcCcCeeEEec
Q 010571          274 LNMTKLAWSILT  285 (507)
Q Consensus       274 ~d~~~~~W~~~~  285 (507)
                      +|+.+.....+.
T Consensus       365 ~d~~~g~~~~Lt  376 (433)
T PRK04922        365 MDLSTGSVRTLT  376 (433)
T ss_pred             EECCCCCeEECC
Confidence            999888877654

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.07  E-value=0.35  Score=43.24  Aligned_cols=9  Identities=11%  Similarity=0.501  Sum_probs=3.3

Q ss_pred             hhhHHHHHH
Q 010571          413 SRFREKIDE  421 (507)
Q Consensus       413 ~~l~~~~~~  421 (507)
                      ++++.++..
T Consensus       103 ~~l~~~l~~  111 (206)
T PRK10884        103 KTLTDKLNN  111 (206)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=94.05  E-value=4.2  Score=37.77  Aligned_cols=162  Identities=15%  Similarity=0.043  Sum_probs=90.0

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECC-----CCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEE
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLE-----TNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~-----t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d  174 (507)
                      .+++|++.|....     .+..|...     .+.....-   .+|.+-.|...+++++.+|+.-.      .++.|.+||
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd   95 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD   95 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence            5788888886544     35555322     22233332   56777778888889999998644      267899999


Q ss_pred             cCCCcEE-EeecCCCC-----CCCCCC---ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC----cEEeeeecCCCC
Q 010571          175 LETMTWD-AVEVTQTP-----PAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN----EWSQPEIKGDLV  241 (507)
Q Consensus       175 ~~t~~W~-~~~~~g~~-----p~~r~~---~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~----~W~~~~~~~~~p  241 (507)
                      +.+..-. .....+..     |-...+   .-+++-.++ |+++=....+.-.--+-.+|+.+.    +|..     .++
T Consensus        96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~  169 (250)
T PF02191_consen   96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYP  169 (250)
T ss_pred             CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccC
Confidence            9988765 33221111     111111   123333445 666654433321123455666554    3543     233


Q ss_pred             CCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEE
Q 010571          242 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       242 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  283 (507)
                      .+..+ .++++-+.||++-..+... ..-.+.||+.+++=..
T Consensus       170 k~~~~-naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~  209 (250)
T PF02191_consen  170 KRSAG-NAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEED  209 (250)
T ss_pred             chhhc-ceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceec
Confidence            33333 4566667788886544332 3335789998876543

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=93.88  E-value=0.3  Score=47.22  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=11.3

Q ss_pred             HHHHHHHhHHHHHHHHHHhh
Q 010571          470 EVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~~~~~  489 (507)
                      |.+-++++.+.-|+|+..++
T Consensus       348 E~q~~~kkrqnaekql~~Ak  367 (575)
T KOG4403|consen  348 EVQYYNKKRQNAEKQLKEAK  367 (575)
T ss_pred             HHHHHHHHhhhHHHHHHHHH
Confidence            44455555566666666544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.85  E-value=9.3  Score=39.59  Aligned_cols=110  Identities=15%  Similarity=0.089  Sum_probs=54.4

Q ss_pred             CCeEeeCCC--CCeEEeccCC-CCCCc-cccceEEEEC-CEEEEEcCCCCCccCCceEEEECCCCc--eeEeeecccccc
Q 010571            4 GSWHLELPY--DLWVTLPVSG-ARPSP-RYKHAAAVFD-QKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDA   76 (507)
Q Consensus         4 ~~~~~d~~~--~~W~~~~~~~-~~p~~-r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~   76 (507)
                      -++++|+.+  -.|..-.... ..+.+ -....+++.+ +.||+-..      ...++.+|..|++  |+.-.....   
T Consensus        72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~~---  142 (488)
T cd00216          72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLVALDAETGKQVWKFGNNDQV---  142 (488)
T ss_pred             cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEEEEECCCCCEeeeecCCCCc---
Confidence            457888774  4587543211 00111 1122234445 77776432      3568999999874  765332110   


Q ss_pred             CccccCCccCCCCCccceeeEEECCEEEEEcccCCCC---CCcceEEEEECCCC--cEEEee
Q 010571           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---SDSMIVRFIDLETN--LCGVME  133 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~d~~t~--~W~~~~  133 (507)
                                .+......+.+..++.+|+ |......   .....++.||..|+  .|+.-.
T Consensus       143 ----------~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         143 ----------PPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             ----------CcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence                      0000112333445666554 4322111   12346899999887  487543

The alignment model contains an 8-bladed beta-propeller.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=93.83  E-value=0.54  Score=51.24  Aligned_cols=48  Identities=17%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      +..++..++.++..+........+++..+...++.+..++.++.+.+.
T Consensus       677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n  724 (1074)
T KOG0250|consen  677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN  724 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555555555555555555555666666666665555555555444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.81  E-value=0.37  Score=42.95  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ....+...++.++.++.+....+...+.++..++.++..++..+.++.+-.+.++
T Consensus        96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~  150 (194)
T PF08614_consen   96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ  150 (194)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444445555555555555555555555555555555555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>cd00094 HX Hemopexin-like repeats

Probab=93.79  E-value=4.6  Score=35.92  Aligned_cols=155  Identities=15%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCC
Q 010571           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYK  111 (507)
Q Consensus        33 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~  111 (507)
                      ++...+.+|+|-|       +.+++++.........+...          .....| .....+..... +++|+|-|.  
T Consensus        12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~----------~w~~~p-~~IDAa~~~~~~~~~yfFkg~--   71 (194)
T cd00094          12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISS----------FWPSLP-SPVDAAFERPDTGKIYFFKGD--   71 (194)
T ss_pred             EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhh----------hCCCCC-CCccEEEEECCCCEEEEECCC--
Confidence            3345689999988       45777776521111111000          011112 22222322223 889999763  


Q ss_pred             CCCCcceEEEEECCCCcEE---EeecCCCCCC-CcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEe---
Q 010571          112 KSSDSMIVRFIDLETNLCG---VMETSGKVPV-ARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAV---  183 (507)
Q Consensus       112 ~~~~~~~~~~~d~~t~~W~---~~~~~g~~p~-~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~---  183 (507)
                            .+|+|+..+....   .+...+-.+. .....+...- ++++|+|-|.        ..+.||..+.+...-   
T Consensus        72 ------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~  137 (194)
T cd00094          72 ------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPK  137 (194)
T ss_pred             ------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCc
Confidence                  3788876642221   1111011111 1222222222 5799999873        477777654433210   


Q ss_pred             --ecC-CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          184 --EVT-QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       184 --~~~-g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                        ... ..+|..  -.++....++.+|+|-|       +..|+||..+.+
T Consensus       138 ~i~~~w~g~p~~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~  178 (194)
T cd00094         138 LIETDFPGVPDK--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE  178 (194)
T ss_pred             chhhcCCCcCCC--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence              000 022322  23344455577999988       679999988765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.77  E-value=0.99  Score=43.38  Aligned_cols=52  Identities=15%  Similarity=0.323  Sum_probs=27.2

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      ...+++.++...+..+..++.+++..+.+++..++++.++++.++..+..+.
T Consensus        57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555555555555555555555554444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=93.76  E-value=0.55  Score=51.20  Aligned_cols=64  Identities=22%  Similarity=0.384  Sum_probs=29.4

Q ss_pred             HHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHH-HhHH----HHHHHHHHHHHhHHHHHH
Q 010571          420 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML-ESSQ----TIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       420 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~-~~~~----~~e~e~~~~~~~~~~~~~  483 (507)
                      +.+.++..+.+.++...+...++.++....++.++..+++++ +..+    +.+.++++|.++.+.++.
T Consensus       347 ~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~  415 (1074)
T KOG0250|consen  347 DDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE  415 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444555555556666666666555 2222    334444444444443333

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.70  E-value=5.8  Score=36.73  Aligned_cols=220  Identities=14%  Similarity=0.078  Sum_probs=115.8

Q ss_pred             EeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCcc
Q 010571            7 HLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL   85 (507)
Q Consensus         7 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~   85 (507)
                      ++||.+.+=.+.+    ++..-.-|.+++- ++...+.-+      ...+-++|+.+..-+..+.....           
T Consensus        87 hLdP~tGev~~yp----Lg~Ga~Phgiv~gpdg~~Witd~------~~aI~R~dpkt~evt~f~lp~~~-----------  145 (353)
T COG4257          87 HLDPATGEVETYP----LGSGASPHGIVVGPDGSAWITDT------GLAIGRLDPKTLEVTRFPLPLEH-----------  145 (353)
T ss_pred             ecCCCCCceEEEe----cCCCCCCceEEECCCCCeeEecC------cceeEEecCcccceEEeeccccc-----------
Confidence            4666666666665    3444444554433 233333322      12688999998887776654321           


Q ss_pred             CCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceE-EEECCEEEEEcCcCC
Q 010571           86 EVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSV-TLVGSRLIIFGGEDR  162 (507)
Q Consensus        86 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~-~~~~~~l~~~GG~~~  162 (507)
                          +-.+.-.+++  .+.|++.|-....       -.+||.++.-+..+    .|.+..-+.+ +.-++.+|+.-=   
T Consensus       146 ----a~~nlet~vfD~~G~lWFt~q~G~y-------GrLdPa~~~i~vfp----aPqG~gpyGi~atpdGsvwyasl---  207 (353)
T COG4257         146 ----ADANLETAVFDPWGNLWFTGQIGAY-------GRLDPARNVISVFP----APQGGGPYGICATPDGSVWYASL---  207 (353)
T ss_pred             ----CCCcccceeeCCCccEEEeeccccc-------eecCcccCceeeec----cCCCCCCcceEECCCCcEEEEec---
Confidence                2223333444  3667777642211       15666666555443    3333333333 334677777521   


Q ss_pred             CCCccCcEEEEEcCCCcEEEeecCCCCCCCC--CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCC
Q 010571          163 SRKLLNDVHFLDLETMTWDAVEVTQTPPAPR--YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  240 (507)
Q Consensus       163 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r--~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  240 (507)
                         .-|-+-..|+.+..=..+.    .|.+.  ..-.+-+..-+++++.-     .-...+++||++...|.+-.    +
T Consensus       208 ---agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~eyp----L  271 (353)
T COG4257         208 ---AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWIEYP----L  271 (353)
T ss_pred             ---cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEec-----cCCceeeEeCcccccceeee----C
Confidence               2345777888777555553    22221  11112222334566641     12256999999999999842    3


Q ss_pred             CCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          241 VTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       241 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      |......-+..+  .+++++-     .-..+-+..||+.+.+++.++.
T Consensus       272 Pgs~arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         272 PGSKARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             CCCCCCcceeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence            322111122333  3456643     1123468899999999998754

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.70  E-value=6.8  Score=37.50  Aligned_cols=218  Identities=13%  Similarity=0.165  Sum_probs=92.6

Q ss_pred             CCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEEC-CCCceeEeeeccccccCccccCCccCCCCC
Q 010571           12 YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-RSLAWSNLRLETELDADKTEDSGLLEVLPP   90 (507)
Q Consensus        12 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~-~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~   90 (507)
                      -..|+.+......+....-+++...++..|+.|..       .+..... .-.+|+.++...               +.+
T Consensus        46 G~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~---------------~lp  103 (302)
T PF14870_consen   46 GKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSS---------------KLP  103 (302)
T ss_dssp             TSS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----T---------------T-S
T ss_pred             CccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCC---------------CCC
Confidence            46788876422222112233444568889988741       2322223 345899987532               113


Q ss_pred             ccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccC
Q 010571           91 MSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus        91 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~  168 (507)
                      -..+.+..+ ++.++++|..       ..++.=.-.-.+|+.+..   ...+ .-..+... ++.+++++...       
T Consensus       104 gs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~---~~~g-s~~~~~r~~dG~~vavs~~G-------  165 (302)
T PF14870_consen  104 GSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS---ETSG-SINDITRSSDGRYVAVSSRG-------  165 (302)
T ss_dssp             S-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE----S-----EEEEEE-TTS-EEEEETTS-------
T ss_pred             CCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc---CCcc-eeEeEEECCCCcEEEEECcc-------
Confidence            333444444 5677777642       125554445569998863   1111 11122223 44656565432       


Q ss_pred             cEE-EEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEE--CCCCcEEeeeecCCCCCCCc
Q 010571          169 DVH-FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD--LQTNEWSQPEIKGDLVTGRA  245 (507)
Q Consensus       169 ~~~-~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d--~~~~~W~~~~~~~~~p~~r~  245 (507)
                      .++ ..|+....|....    .+..|.-.+|....++.|++.. .++     .+..=+  -...+|.+..  .+......
T Consensus       166 ~~~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~--~~~~~~~~  233 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI--IPIKTNGY  233 (302)
T ss_dssp             SEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B---TTSS--S
T ss_pred             cEEEEecCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc--CCcccCce
Confidence            343 4677777899886    3455666777777788787765 322     233333  2345687732  12222233


Q ss_pred             ceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccC
Q 010571          246 GHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       246 ~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~  287 (507)
                      ++-.+.+  ++.+++.||..      .+++=.-.-.+|++.+..
T Consensus       234 ~~ld~a~~~~~~~wa~gg~G------~l~~S~DgGktW~~~~~~  271 (302)
T PF14870_consen  234 GILDLAYRPPNEIWAVGGSG------TLLVSTDGGKTWQKDRVG  271 (302)
T ss_dssp             -EEEEEESSSS-EEEEESTT-------EEEESSTTSS-EE-GGG
T ss_pred             eeEEEEecCCCCEEEEeCCc------cEEEeCCCCccceECccc
Confidence            3333333  46788888732      233333456789986543

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=93.59  E-value=1  Score=33.21  Aligned_cols=69  Identities=17%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             hHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571          405 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       405 ~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~  479 (507)
                      +...+.+...+-.++...+....+.+..+...-.+++..+.++.++|..+..++++      -|+|+.+|+.+++
T Consensus         6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~------YEeEI~rLr~eLe   74 (79)
T PF08581_consen    6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ------YEEEIARLRRELE   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            33444455555555555555555666666666666667777777777666544443      3556666665554

; PDB: 3VP9_B 3VP8_B.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=93.54  E-value=1.3  Score=43.69  Aligned_cols=50  Identities=14%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh
Q 010571          394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~  443 (507)
                      ++.+....+..+.....+..+|+.+|..+++++..++.++.+....+.+.
T Consensus        43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~   92 (420)
T COG4942          43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKL   92 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            33333333333333444444555555555555544444444444333333

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=93.52  E-value=0.87  Score=42.17  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=27.6

Q ss_pred             HHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       416 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      +..++....+++..++.+..+..+...+..++++...++...+++|+.+|
T Consensus       168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq  217 (267)
T PF10234_consen  168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ  217 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444455555555566666666666666666666

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PRK13684 Ycf48-like protein; Provisional

Probab=93.39  E-value=8.4  Score=37.65  Aligned_cols=217  Identities=11%  Similarity=0.066  Sum_probs=100.6

Q ss_pred             CCCeEEeccCCCCCCc-cccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCC
Q 010571           12 YDLWVTLPVSGARPSP-RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP   90 (507)
Q Consensus        12 ~~~W~~~~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~   90 (507)
                      -..|+.+...  .|.. ..-.++...++..|+.|.      ...+++=+-.-.+|+.+.....               .+
T Consensus        75 G~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~------~g~i~~S~DgG~tW~~~~~~~~---------------~~  131 (334)
T PRK13684         75 GETWEERSLD--LPEENFRLISISFKGDEGWIVGQ------PSLLLHTTDGGKNWTRIPLSEK---------------LP  131 (334)
T ss_pred             CCCceECccC--CcccccceeeeEEcCCcEEEeCC------CceEEEECCCCCCCeEccCCcC---------------CC
Confidence            3579887642  2222 122333334555666553      1223222112248988764211               01


Q ss_pred             ccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCc
Q 010571           91 MSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        91 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~  169 (507)
                      ...+.+..+ ++.+|+.|..       ..++.-+-.-.+|..+..    +..-..+.+....+..++..|..+      .
T Consensus       132 ~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~  194 (334)
T PRK13684        132 GSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------N  194 (334)
T ss_pred             CCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------e
Confidence            112233334 3456666532       124444445579998752    222233334444443344333211      2


Q ss_pred             EEEE-EcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEE-C-CCCcEEeeeecCCCCCCCcc
Q 010571          170 VHFL-DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLD-L-QTNEWSQPEIKGDLVTGRAG  246 (507)
Q Consensus       170 ~~~~-d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d-~-~~~~W~~~~~~~~~p~~r~~  246 (507)
                      ++.- |....+|+.+..    +..+..++++...++.++++|..+       ..++. . ...+|+.+.. +........
T Consensus       195 i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l  262 (334)
T PRK13684        195 FYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGY  262 (334)
T ss_pred             EEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-Cccccccce
Confidence            3332 334457998853    334555566666677788887642       22332 2 2347997531 111111122


Q ss_pred             eEEEEE-CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          247 HAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       247 ~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      ++++.. ++.++++|.. +     -++.-...-.+|..+..
T Consensus       263 ~~v~~~~~~~~~~~G~~-G-----~v~~S~d~G~tW~~~~~  297 (334)
T PRK13684        263 LDLAYRTPGEIWAGGGN-G-----TLLVSKDGGKTWEKDPV  297 (334)
T ss_pred             eeEEEcCCCCEEEEcCC-C-----eEEEeCCCCCCCeECCc
Confidence            333333 4578777652 1     23333334568998653

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=93.37  E-value=0.34  Score=48.20  Aligned_cols=20  Identities=15%  Similarity=0.282  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~  485 (507)
                      +|++++++++.++++|.+++
T Consensus       120 ql~~~~~~~~~~l~~l~~~l  139 (472)
T TIGR03752       120 QLKSERQQLQGLIDQLQRRL  139 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555544

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=93.35  E-value=0.46  Score=41.69  Aligned_cols=68  Identities=21%  Similarity=0.298  Sum_probs=33.6

Q ss_pred             HHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571          395 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      ++...+++.+++....++..|...+++++.+.++.+.++++++.++..+.+...++.-++..++.+..
T Consensus       134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~  201 (290)
T COG4026         134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD  201 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence            34444444455555555555555555555555555555555555555554444444444444444433

>PRK09039 hypothetical protein; Validated

Probab=93.29  E-value=0.99  Score=44.13  Aligned_cols=46  Identities=17%  Similarity=0.192  Sum_probs=21.8

Q ss_pred             HHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHH
Q 010571          416 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  461 (507)
Q Consensus       416 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~  461 (507)
                      ...+...+....+...+++.++.|++.+++++..++..+...+++.
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444455555555555555555554444444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=93.29  E-value=9  Score=37.64  Aligned_cols=278  Identities=17%  Similarity=0.165  Sum_probs=131.1

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEE--ECCEEEEEcCCCCCccCCce--EEEECCCCceeEeeeccccccCccc
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAV--FDQKLYIVGGSRNGRFLSDV--QVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~--~~~d~~t~~W~~~~~~~~~~~~~~~   80 (507)
                      +|.||..+..++.+......+.|.   -++.  -++.||+.....  .....+  +.++..+++.+.+......      
T Consensus        17 ~~~~d~~~g~l~~~~~~~~~~~Ps---~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~~------   85 (345)
T PF10282_consen   17 VFRFDEETGTLTLVQTVAEGENPS---WLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPSG------   85 (345)
T ss_dssp             EEEEETTTTEEEEEEEEEESSSEC---CEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEES------
T ss_pred             EEEEcCCCCCceEeeeecCCCCCc---eEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeeccC------
Confidence            356777899998776421122222   1222  367888886543  112334  4455555777777654311      


Q ss_pred             cCCccCCCCCccceeeEEE---CCEEEEEcccCCCCCCcceEEEEECCCC-cEEEee----c--CCCCC---CCcccceE
Q 010571           81 DSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVME----T--SGKVP---VARGGHSV  147 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~t~-~W~~~~----~--~g~~p---~~r~~~~~  147 (507)
                               +. ..+.+.+   +..||+.-- .     ...+.+|++... .-....    .  .|+-|   ..-.-|.+
T Consensus        86 ---------g~-~p~~i~~~~~g~~l~vany-~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v  149 (345)
T PF10282_consen   86 ---------GS-SPCHIAVDPDGRFLYVANY-G-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV  149 (345)
T ss_dssp             ---------SS-CEEEEEECTTSSEEEEEET-T-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred             ---------CC-CcEEEEEecCCCEEEEEEc-c-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence                     22 2222233   455666421 1     224777777653 332221    0  11211   11223444


Q ss_pred             EEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCCCceEEEE-cCcEEEEEeCCCCCcCCCcEE
Q 010571          148 TLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLH  222 (507)
Q Consensus       148 ~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~i~  222 (507)
                      ..-  ++.+|+..=      -.+.|+.|++....  ....... ..|..-.-.-++.. .+.++|+..-.+     +.+.
T Consensus       150 ~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~  217 (345)
T PF10282_consen  150 VFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVS  217 (345)
T ss_dssp             EE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEE
T ss_pred             EECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEE
Confidence            444  346776521      14578898887655  5443221 12222211223443 346788887653     5666


Q ss_pred             EEECC--CCcEEeeeecCCCCCC---CcceEEEEE---CCEEEEEeccCCCCCcceEEEEEc--CcCeeEEeccCCCCCC
Q 010571          223 VLDLQ--TNEWSQPEIKGDLVTG---RAGHAGITI---DENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVKGRNP  292 (507)
Q Consensus       223 ~~d~~--~~~W~~~~~~~~~p~~---r~~~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~--~~~~W~~~~~~~~~~p  292 (507)
                      .|+..  .+.++.+......|..   ....+.+.+   +..||+....     .+.+.+|++  .+...+.+...+.   
T Consensus       218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~---  289 (345)
T PF10282_consen  218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPT---  289 (345)
T ss_dssp             EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEE---
T ss_pred             EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeC---
Confidence            66665  6677765543333322   212333334   3357776432     345667776  4455555544321   


Q ss_pred             CCCCCCceEEE-EEcCceEEEEEcccCCCcCCeEEEE--ECCCCCCC
Q 010571          293 LASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEVFVM--RLKPRDIP  336 (507)
Q Consensus       293 ~~~~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~v~~~--~~~~~~w~  336 (507)
                         .+.....+ +.+++.+|+|.+..+    +.|.+|  |..+..+.
T Consensus       290 ---~G~~Pr~~~~s~~g~~l~Va~~~s----~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  290 ---GGKFPRHFAFSPDGRYLYVANQDS----NTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             ---SSSSEEEEEE-TTSSEEEEEETTT----TEEEEEEEETTTTEEE
T ss_pred             ---CCCCccEEEEeCCCCEEEEEecCC----CeEEEEEEeCCCCcEE
Confidence               12222223 344556777755433    345555  44554443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=93.23  E-value=3.9  Score=41.59  Aligned_cols=123  Identities=16%  Similarity=0.242  Sum_probs=61.2

Q ss_pred             CCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEEC--CEEEEEeccCCCC
Q 010571          190 PAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNN  266 (507)
Q Consensus       190 p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~  266 (507)
                      -.|+.+.-++... +.-||+.|- +     +++|+||+..+.|-.+-.     ..-....++.++  +.|+.+||.++  
T Consensus       131 RIP~~GRDm~y~~~scDly~~gs-g-----~evYRlNLEqGrfL~P~~-----~~~~~lN~v~in~~hgLla~Gt~~g--  197 (703)
T KOG2321|consen  131 RIPKFGRDMKYHKPSCDLYLVGS-G-----SEVYRLNLEQGRFLNPFE-----TDSGELNVVSINEEHGLLACGTEDG--  197 (703)
T ss_pred             ecCcCCccccccCCCccEEEeec-C-----cceEEEEccccccccccc-----cccccceeeeecCccceEEecccCc--
Confidence            3455555555532 223665443 2     789999999999976421     111222334443  46888887544  


Q ss_pred             CcceEEEEEcCcCeeE-EeccCCC--CCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          267 GCQETIVLNMTKLAWS-ILTSVKG--RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       267 ~~~d~~~~d~~~~~W~-~~~~~~~--~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                         .+..+|+.+..-- .|.....  ..|......++.++.+.+++.=+-+|-.    ...++.||+..
T Consensus       198 ---~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa  259 (703)
T KOG2321|consen  198 ---VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRA  259 (703)
T ss_pred             ---eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEccc
Confidence               3667777655321 1111100  1122222334555555554333344443    34567777643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=92.95  E-value=12  Score=38.07  Aligned_cols=183  Identities=10%  Similarity=0.053  Sum_probs=93.8

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++.-+.+.....                 ........- +++|++......    ..+++++|+.++....
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g-----------------~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~  281 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEG-----------------LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSR  281 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCC-----------------CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEE
Confidence            479999999887766543221                 111111122 345554322111    2469999999998877


Q ss_pred             eecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC-cEEEEE
Q 010571          132 METSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVF  209 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~  209 (507)
                      +..   .+. ........-+ ..|++.....+    ...++.+|+.++++..+...+     ..........+ +.|++.
T Consensus       282 lt~---~~~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        282 VTN---HPA-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMV  348 (430)
T ss_pred             ccc---CCC-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEE
Confidence            642   111 1111111223 35655432221    347999999999888775322     11122222233 444444


Q ss_pred             eCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      .... +  ...++.+|+.++..+.+...+     ........-+++.+++....+  ....+++++....
T Consensus       349 ~~~~-~--~~~l~~~dl~tg~~~~lt~~~-----~~~~p~~spdg~~i~~~~~~~--g~~~l~~~~~~g~  408 (430)
T PRK00178        349 HRQD-G--NFHVAAQDLQRGSVRILTDTS-----LDESPSVAPNGTMLIYATRQQ--GRGVLMLVSINGR  408 (430)
T ss_pred             EccC-C--ceEEEEEECCCCCEEEccCCC-----CCCCceECCCCCEEEEEEecC--CceEEEEEECCCC
Confidence            3322 2  246999999998887764211     111122333666666654322  2235777776543

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=92.88  E-value=1.8  Score=41.39  Aligned_cols=20  Identities=5%  Similarity=0.300  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~  485 (507)
                      .|.+|+++..++++++..++
T Consensus       360 ~L~keLeekkreleql~~q~  379 (442)
T PF06637_consen  360 SLAKELEEKKRELEQLKMQL  379 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555444443

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=92.81  E-value=3.6  Score=33.82  Aligned_cols=86  Identities=14%  Similarity=0.167  Sum_probs=57.3

Q ss_pred             EECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEE-EcC
Q 010571           98 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DLE  176 (507)
Q Consensus        98 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~-d~~  176 (507)
                      .++|-||...-.  .....+.+..||..+.+|+.+..............++.++++|-++.-........-++|++ |..
T Consensus         3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~   80 (129)
T PF08268_consen    3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE   80 (129)
T ss_pred             EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence            467888887765  22235579999999999998864211234455667788899888875543322123467887 466


Q ss_pred             CCcEEEeec
Q 010571          177 TMTWDAVEV  185 (507)
Q Consensus       177 t~~W~~~~~  185 (507)
                      ...|.+...
T Consensus        81 k~~Wsk~~~   89 (129)
T PF08268_consen   81 KQEWSKKHI   89 (129)
T ss_pred             cceEEEEEE
Confidence            788998764

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=92.72  E-value=4.7  Score=33.10  Aligned_cols=82  Identities=16%  Similarity=0.149  Sum_probs=53.1

Q ss_pred             CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC-CCcceEEEEE-cCcCe
Q 010571          203 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-NGCQETIVLN-MTKLA  280 (507)
Q Consensus       203 ~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~d~~~~d-~~~~~  280 (507)
                      |+.+|-..-. .....+.|..||+.+.+|+.+...............+.++++|.++.-.... ...-++|+++ ..+..
T Consensus         5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~   83 (129)
T PF08268_consen    5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQE   83 (129)
T ss_pred             CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccce
Confidence            5545544333 3344577999999999999875421223345556778889998887554332 2346899885 66778


Q ss_pred             eEEec
Q 010571          281 WSILT  285 (507)
Q Consensus       281 W~~~~  285 (507)
                      |++..
T Consensus        84 Wsk~~   88 (129)
T PF08268_consen   84 WSKKH   88 (129)
T ss_pred             EEEEE
Confidence            99753

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.70  E-value=1.5  Score=45.89  Aligned_cols=25  Identities=16%  Similarity=0.169  Sum_probs=13.2

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRF  415 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l  415 (507)
                      +..|..+++.+++..++.+++.++.
T Consensus       326 qaELerRRq~leeqqqreree~eqk  350 (1118)
T KOG1029|consen  326 QAELERRRQALEEQQQREREEVEQK  350 (1118)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666665555544444443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=92.70  E-value=2  Score=37.85  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=39.2

Q ss_pred             hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      .|+...++....+.........++..+.....+++.-+.|++....+.+.+++++..++.++.+++..+...
T Consensus        35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~  106 (202)
T PF06818_consen   35 SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA  106 (202)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence            333333333334444334444455445555555555555666666666666666667777777666665553

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PRK02889 tolB translocation protein TolB; Provisional

Probab=92.64  E-value=13  Score=37.77  Aligned_cols=182  Identities=9%  Similarity=-0.008  Sum_probs=89.7

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++.=..+....                 .........-+ ++|++......    ..++|.+|..++....
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFK-----------------GSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRR  278 (427)
T ss_pred             cEEEEEECCCCCEEEeecCC-----------------CCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEE
Confidence            46999999888654443221                 11111222223 45554432221    3469999998877665


Q ss_pred             eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC-cEEEEE
Q 010571          132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVF  209 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~  209 (507)
                      +..   .. .........-++ .|++.....+    ...++.++..+.....+...+     ..........+ +.|++.
T Consensus       279 lt~---~~-~~~~~~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        279 LTQ---SS-GIDTEPFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCC---CC-CCCcCeEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEE
Confidence            531   11 111111222234 4554332211    346888898888777765322     11122223333 444443


Q ss_pred             eCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCc
Q 010571          210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  278 (507)
                      ...++   ...++++|+.++..+.+....     ........-+++.+++....+.  ...+++++...
T Consensus       346 s~~~g---~~~I~v~d~~~g~~~~lt~~~-----~~~~p~~spdg~~l~~~~~~~g--~~~l~~~~~~g  404 (427)
T PRK02889        346 SRVGG---AFKLYVQDLATGQVTALTDTT-----RDESPSFAPNGRYILYATQQGG--RSVLAAVSSDG  404 (427)
T ss_pred             EccCC---cEEEEEEECCCCCeEEccCCC-----CccCceECCCCCEEEEEEecCC--CEEEEEEECCC
Confidence            33221   136999999888877653211     1111223335666666553322  23567777644

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.61  E-value=2.2  Score=39.79  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=15.1

Q ss_pred             hHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          429 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       429 ~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      +.+|++..+..++++++.+..+++++.++++++...+
T Consensus        61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~   97 (251)
T PF11932_consen   61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE   97 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344444444444444444444444444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PTZ00420 coronin; Provisional

Probab=92.60  E-value=15  Score=38.55  Aligned_cols=107  Identities=16%  Similarity=0.196  Sum_probs=51.9

Q ss_pred             EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          153 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      .+++.||.+      ..+.++|+.+.+=.. ..  ..  +..-.++....++.+++.++.+     ..+.+||+.++.-.
T Consensus       139 ~iLaSgS~D------gtIrIWDl~tg~~~~-~i--~~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        139 YIMCSSGFD------SFVNIWDIENEKRAF-QI--NM--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEIA  202 (568)
T ss_pred             eEEEEEeCC------CeEEEEECCCCcEEE-EE--ec--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcEE
Confidence            455566653      358889988765211 11  11  1112334444566677766643     45899999876432


Q ss_pred             eeeecCCCCCCCcceEEE--E--ECCEEEEEeccCCCCCcceEEEEEcCc
Q 010571          233 QPEIKGDLVTGRAGHAGI--T--IDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       233 ~~~~~~~~p~~r~~~~~~--~--~~~~l~v~GG~~~~~~~~d~~~~d~~~  278 (507)
                      .- ..+. ...+..-...  .  -++..++.+|.+.. ....+.++|+.+
T Consensus       203 ~t-l~gH-~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~  249 (568)
T PTZ00420        203 SS-FHIH-DGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKN  249 (568)
T ss_pred             EE-Eecc-cCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCC
Confidence            21 0010 0111110111  1  23456666665442 223578888764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=92.56  E-value=13  Score=37.72  Aligned_cols=149  Identities=9%  Similarity=0.106  Sum_probs=78.1

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      ..++.+|+.+++-+.+.   ..+..... ....-++ +|++....++    ..+++.+|+.+++...+...   +.  ..
T Consensus       223 ~~i~i~dl~~G~~~~l~---~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~  289 (429)
T PRK03629        223 SALVIQTLANGAVRQVA---SFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NN  289 (429)
T ss_pred             cEEEEEECCCCCeEEcc---CCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--Cc
Confidence            46899999888766654   22221111 1112233 5655433221    23599999999887766421   11  11


Q ss_pred             ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  275 (507)
                      .......++..++|......  ...+|.+|+.++.-..+...+    .........-+++.+++.+...  ...+++++|
T Consensus       290 ~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~d  361 (429)
T PRK03629        290 TEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNG--GQQHIAKQD  361 (429)
T ss_pred             CceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccC--CCceEEEEE
Confidence            22333344444444332211  257999999887766653211    1111122223455444433222  134689999


Q ss_pred             cCcCeeEEecc
Q 010571          276 MTKLAWSILTS  286 (507)
Q Consensus       276 ~~~~~W~~~~~  286 (507)
                      +.+..+..+..
T Consensus       362 l~~g~~~~Lt~  372 (429)
T PRK03629        362 LATGGVQVLTD  372 (429)
T ss_pred             CCCCCeEEeCC
Confidence            99998887653

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.47  E-value=10  Score=38.29  Aligned_cols=148  Identities=17%  Similarity=0.143  Sum_probs=77.9

Q ss_pred             cceEEEEECCCC-----cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc---EEEeecCC
Q 010571          116 SMIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT---WDAVEVTQ  187 (507)
Q Consensus       116 ~~~~~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~---W~~~~~~g  187 (507)
                      .+.++.+|....     .|..+..    +..-..+.+...++.+|+....+..   ...+..+++.+..   |..+-+  
T Consensus       251 ~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~--  321 (414)
T PF02897_consen  251 ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLI--  321 (414)
T ss_dssp             EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--
T ss_pred             CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEc--
Confidence            468999999875     8888862    2223334455568899988764332   4478889887765   764332  


Q ss_pred             CCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE----CCEEEE-Eecc
Q 010571          188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYI-VGGG  262 (507)
Q Consensus       188 ~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v-~GG~  262 (507)
                       .+.....-..+...+++|++.-=.+   ....|.++++. ..|.....    |.+-.+.....-    .+.+++ +.+.
T Consensus       322 -~~~~~~~l~~~~~~~~~Lvl~~~~~---~~~~l~v~~~~-~~~~~~~~----~~p~~g~v~~~~~~~~~~~~~~~~ss~  392 (414)
T PF02897_consen  322 -PEDEDVSLEDVSLFKDYLVLSYREN---GSSRLRVYDLD-DGKESREI----PLPEAGSVSGVSGDFDSDELRFSYSSF  392 (414)
T ss_dssp             ---SSSEEEEEEEEETTEEEEEEEET---TEEEEEEEETT--TEEEEEE----ESSSSSEEEEEES-TT-SEEEEEEEET
T ss_pred             -CCCCceeEEEEEEECCEEEEEEEEC---CccEEEEEECC-CCcEEeee----cCCcceEEeccCCCCCCCEEEEEEeCC
Confidence             1112111222223355566543222   23578899987 33444321    222222211111    234443 3332


Q ss_pred             CCCCCcceEEEEEcCcCeeEEe
Q 010571          263 DNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       263 ~~~~~~~d~~~~d~~~~~W~~~  284 (507)
                      .   ....+|.||+.+++.+.+
T Consensus       393 ~---~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  393 T---TPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             T---EEEEEEEEETTTTCEEEE
T ss_pred             C---CCCEEEEEECCCCCEEEE
Confidence            2   234789999999887654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.42  E-value=10  Score=37.33  Aligned_cols=218  Identities=13%  Similarity=0.026  Sum_probs=99.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.-++|+|...  ....++.+|+.++.-.++..-..               ....+-.++.-++.||++-.       .
T Consensus        46 dG~kllF~s~~d--g~~nly~lDL~t~~i~QLTdg~g---------------~~~~g~~~s~~~~~~~Yv~~-------~  101 (386)
T PF14583_consen   46 DGRKLLFASDFD--GNRNLYLLDLATGEITQLTDGPG---------------DNTFGGFLSPDDRALYYVKN-------G  101 (386)
T ss_dssp             TS-EEEEEE-TT--SS-EEEEEETTT-EEEE---SS----------------B-TTT-EE-TTSSEEEEEET-------T
T ss_pred             CCCEEEEEeccC--CCcceEEEEcccCEEEECccCCC---------------CCccceEEecCCCeEEEEEC-------C
Confidence            444455555322  34679999999999888765331               12333333333567766531       1


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCc----CC-------------CCCccCcEEEEEcCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGE----DR-------------SRKLLNDVHFLDLETM  178 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~----~~-------------~~~~~~~~~~~d~~t~  178 (507)
                      ..+...|+.|.+=+.+-   ..|..-.++...+++ +.-.++|=.    +.             .......+...|+.++
T Consensus       102 ~~l~~vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG  178 (386)
T PF14583_consen  102 RSLRRVDLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG  178 (386)
T ss_dssp             TEEEEEETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred             CeEEEEECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence            35889999998765555   556555554444433 211121111    00             0123456888899999


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCC-CcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEE
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF-NDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY  257 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~-~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~  257 (507)
                      +.+.+-...    .-.+|....-.+..+++|---+.-... ..||..|........+.  ...+...++|--...++..+
T Consensus       179 ~~~~v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~--~~~~~e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  179 ERKVVFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH--RRMEGESVGHEFWVPDGSTI  252 (386)
T ss_dssp             -EEEEEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-E
T ss_pred             ceeEEEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee--cCCCCcccccccccCCCCEE
Confidence            888775321    223454444445556666433222233 37999998877776663  33445566676666666543


Q ss_pred             EEeccCCCCCcceEEEEEcCcCeeEEeccC
Q 010571          258 IVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       258 v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~  287 (507)
                      .+-+......-.-+..||+.+..=+.+..+
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~  282 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGERRRLMEM  282 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT--EEEEEEE
T ss_pred             EEEeecCCCCceEEEeeCCCCCCceEEEeC
Confidence            332222222223466788887654444444

>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]

Probab=92.40  E-value=1.3  Score=44.62  Aligned_cols=16  Identities=19%  Similarity=0.653  Sum_probs=12.5

Q ss_pred             hhcccccCCCceeeee
Q 010571          488 ATSVQTQGSGGVWRWI  503 (507)
Q Consensus       488 ~~~~~~~~~~~~~~~~  503 (507)
                      ....|+.+++|.|-+.
T Consensus       434 ~p~vqeKK~s~IWqFF  449 (832)
T KOG2077|consen  434 NPAVQEKKRSSIWQFF  449 (832)
T ss_pred             CchhhhhccccHHHHH
Confidence            4467889999999764

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=92.36  E-value=8.7  Score=35.15  Aligned_cols=184  Identities=15%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             CCCCCeEEeccCCCCCC-------ccccceEEEECCEEEEEcCCCCCccCCc--eEEEECCCC-----ceeEeeeccccc
Q 010571           10 LPYDLWVTLPVSGARPS-------PRYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRSL-----AWSNLRLETELD   75 (507)
Q Consensus        10 ~~~~~W~~~~~~~~~p~-------~r~~~~~~~~~~~lyv~GG~~~~~~~~~--~~~~d~~t~-----~W~~~~~~~~~~   75 (507)
                      ...+.|..-..++ .|.       .-.-|+.|++++.-|.+|=-+++.....  +..|...-+     .=+.++..-   
T Consensus       112 F~~spW~~teL~~-~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey---  187 (367)
T PF12217_consen  112 FHDSPWRITELGT-IASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEY---  187 (367)
T ss_dssp             STTS--EEEEEES--TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG---
T ss_pred             cccCCceeeeccc-ccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhhh---
Confidence            3467786443222 333       4567899999988888874333322222  222221111     111122111   


Q ss_pred             cCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC--cccceEEEECCE
Q 010571           76 ADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA--RGGHSVTLVGSR  153 (507)
Q Consensus        76 ~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~--r~~~~~~~~~~~  153 (507)
                                  -....-.|+-..++.||+.--.......-+.+.+-+.....|+.+..    |..  ......+.+++.
T Consensus       188 ------------~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf----p~nvHhtnlPFakvgD~  251 (367)
T PF12217_consen  188 ------------ERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF----PNNVHHTNLPFAKVGDV  251 (367)
T ss_dssp             -------------TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTE
T ss_pred             ------------ccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc----cccccccCCCceeeCCE
Confidence                        11233445666799999976444333335567778888889999963    322  223345678999


Q ss_pred             EEEEcCcCCC---------CCc---cCcEEEE-------EcCCCcEEEeec---CCCCCCCCCCceEEEEcCcEE-EEEe
Q 010571          154 LIIFGGEDRS---------RKL---LNDVHFL-------DLETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFG  210 (507)
Q Consensus       154 l~~~GG~~~~---------~~~---~~~~~~~-------d~~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~~l-~i~G  210 (507)
                      ||+||---..         .++   .....+.       +++.-.|..+.-   .|.....-.+.+.+++.++.| ||||
T Consensus       252 l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FG  331 (367)
T PF12217_consen  252 LYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFG  331 (367)
T ss_dssp             EEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEE
T ss_pred             EEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEec
Confidence            9999864211         111   1223333       333445665542   244444555556667778866 6899


Q ss_pred             CCC
Q 010571          211 GCS  213 (507)
Q Consensus       211 G~~  213 (507)
                      |-+
T Consensus       332 gED  334 (367)
T PF12217_consen  332 GED  334 (367)
T ss_dssp             EB-
T ss_pred             Ccc
Confidence            964

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=92.36  E-value=12  Score=36.74  Aligned_cols=234  Identities=15%  Similarity=0.149  Sum_probs=111.3

Q ss_pred             eEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE---ECCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           55 VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK---WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        55 ~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ++.||..++++..+.....                 -...+...   -++.||+..... .....-..+.++..+++.+.
T Consensus        17 ~~~~d~~~g~l~~~~~~~~-----------------~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~   78 (345)
T PF10282_consen   17 VFRFDEETGTLTLVQTVAE-----------------GENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTL   78 (345)
T ss_dssp             EEEEETTTTEEEEEEEEEE-----------------SSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEE
T ss_pred             EEEEcCCCCCceEeeeecC-----------------CCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEE
Confidence            4556668999988776432                 11122222   256778875543 11112234555555578877


Q ss_pred             eecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCC-cEEEee----cC--CCCC---CCCCCceE
Q 010571          132 METSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVE----VT--QTPP---APRYDHSA  198 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~----~~--g~~p---~~r~~~~~  198 (507)
                      +.   ..+......+.+.+   +..||+.- +.     .+.+.+|++... .-....    ..  ++-|   ..-..|.+
T Consensus        79 ~~---~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v  149 (345)
T PF10282_consen   79 LN---SVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV  149 (345)
T ss_dssp             EE---EEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred             ee---eeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence            76   33322233333444   33566642 11     336888888663 222221    11  1111   11223555


Q ss_pred             EEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecCCCCCCCc-ceEEEEEC-CEEEEEeccCCCCCcceEEE
Q 010571          199 ALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRA-GHAGITID-ENWYIVGGGDNNNGCQETIV  273 (507)
Q Consensus       199 ~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~-~~~~~~~~-~~l~v~GG~~~~~~~~d~~~  273 (507)
                      ....+ +++|+.. .+    .+.|++|++....  ....... ..|..-. .|..+.-+ ..+||+.-.+     +.+.+
T Consensus       150 ~~~pdg~~v~v~d-lG----~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v  218 (345)
T PF10282_consen  150 VFSPDGRFVYVPD-LG----ADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSV  218 (345)
T ss_dssp             EE-TTSSEEEEEE-TT----TTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEE
T ss_pred             EECCCCCEEEEEe-cC----CCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEE
Confidence            55555 4566542 11    3678999887665  5553221 1222111 12222223 4688886532     34555


Q ss_pred             EEcC--cCeeEEeccCCCCCCCCCCC-CceEEEEEcCceEEEEEcccCCCcCCeEEEEEC
Q 010571          274 LNMT--KLAWSILTSVKGRNPLASEG-LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       274 ~d~~--~~~W~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~  330 (507)
                      |+..  +..++.+...+......... ......+.+++.+|||.-..    .+.+..|++
T Consensus       219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~  274 (345)
T PF10282_consen  219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG----SNSISVFDL  274 (345)
T ss_dssp             EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEE
T ss_pred             EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc----CCEEEEEEE
Confidence            5544  66776654332211111111 33444455566788885432    466777776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=92.31  E-value=2.3  Score=38.87  Aligned_cols=59  Identities=20%  Similarity=0.289  Sum_probs=27.5

Q ss_pred             hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHhHHHHHHHHH
Q 010571          428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-----------~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      +...+...++.+++.+.+.+..++..-+.+...++..+           ...+.++.+.+++..+..++|
T Consensus        57 ~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   57 EEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444555555555555555544443333333222           233345555555555555554

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.19  E-value=4.6  Score=33.38  Aligned_cols=22  Identities=18%  Similarity=0.243  Sum_probs=8.6

Q ss_pred             HHHHHhhHhhhhhhhhhHHHHH
Q 010571          433 LSSVQGQLVAERSRCFKLEAQI  454 (507)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~e~~~  454 (507)
                      |..++.+++..+..+.+++...
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~   82 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEA   82 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444443333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=92.16  E-value=9.3  Score=35.02  Aligned_cols=145  Identities=13%  Similarity=0.080  Sum_probs=66.2

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~  179 (507)
                      +.+++.|+.      ...+.+||+.+..-....   . .....-.++.... +.+++.|+.      .+.+..||+.+.+
T Consensus       105 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~  168 (289)
T cd00200         105 GRILSSSSR------DKTIKVWDVETGKCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGK  168 (289)
T ss_pred             CCEEEEecC------CCeEEEEECCCcEEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccc
Confidence            466666652      234888998865433222   1 1111112222233 344444431      2358889987543


Q ss_pred             EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEEC-CEEEE
Q 010571          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYI  258 (507)
Q Consensus       180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v  258 (507)
                      -...-.    .....-.++....++..+++++.+     ..+.+||+.+......-  .  .....-.++.... +.+++
T Consensus       169 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~  235 (289)
T cd00200         169 CVATLT----GHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYLLA  235 (289)
T ss_pred             cceeEe----cCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcEEE
Confidence            222211    111122334444455455566542     56889998764433311  0  1111112222223 34555


Q ss_pred             EeccCCCCCcceEEEEEcCcC
Q 010571          259 VGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       259 ~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      .++.++     .+.+||..+.
T Consensus       236 ~~~~~~-----~i~i~~~~~~  251 (289)
T cd00200         236 SGSEDG-----TIRVWDLRTG  251 (289)
T ss_pred             EEcCCC-----cEEEEEcCCc
Confidence            544222     4778887754

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=92.15  E-value=3.8  Score=35.58  Aligned_cols=83  Identities=16%  Similarity=0.210  Sum_probs=34.5

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh-HHHHHHHHHHHHHhHHHHHHHHHHhh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES-SQTIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~-~~~~e~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      ...+|+.+....++.+.+.+..++.++..++..+....    ++...+++.++ .+.|+.+...++.++.++..++.   
T Consensus       106 rR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~----~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~---  178 (192)
T PF11180_consen  106 RRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQ----QVAARQQQARQEAQALEAERRAAQAQLRQLQRQVR---  178 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            33344444444444444444444444444433332222    22222222222 22444455555555555555543   


Q ss_pred             cccccCCCcee
Q 010571          490 SVQTQGSGGVW  500 (507)
Q Consensus       490 ~~~~~~~~~~~  500 (507)
                      .+|.|...++|
T Consensus       179 ~Lq~q~~~~~~  189 (192)
T PF11180_consen  179 QLQRQANEPIP  189 (192)
T ss_pred             HHHHHhcCCCC
Confidence            33444444444

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.05  E-value=3.2  Score=37.37  Aligned_cols=22  Identities=14%  Similarity=0.317  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      .+++.+.+.-++..-||.|+.+
T Consensus       137 DfeqrLnqAIErnAfLESELdE  158 (333)
T KOG1853|consen  137 DFEQRLNQAIERNAFLESELDE  158 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhH
Confidence            3444455555555556666654

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=92.02  E-value=2.3  Score=38.21  Aligned_cols=13  Identities=15%  Similarity=0.363  Sum_probs=5.0

Q ss_pred             HHHHHhHHHHHHH
Q 010571          472 QILRQQKSAFEQE  484 (507)
Q Consensus       472 ~~~~~~~~~~~~~  484 (507)
                      +.+....+.|.+|
T Consensus       160 e~llesvqRLkdE  172 (333)
T KOG1853|consen  160 EVLLESVQRLKDE  172 (333)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=92.01  E-value=1.8  Score=40.13  Aligned_cols=11  Identities=18%  Similarity=0.323  Sum_probs=4.5

Q ss_pred             HHHHHHHHhHH
Q 010571          469 NEVQILRQQKS  479 (507)
Q Consensus       469 ~e~~~~~~~~~  479 (507)
                      ++..++++++.
T Consensus       103 ~Ea~~lq~el~  113 (246)
T PF00769_consen  103 EEAEELQEELE  113 (246)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33444444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.00  E-value=1.8  Score=34.95  Aligned_cols=72  Identities=19%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             hhhhHHHHHHhhccchhhHHhHHHHHhhHh---hhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHH
Q 010571          412 NSRFREKIDEVNSTHSELSKELSSVQGQLV---AERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~  483 (507)
                      ...++.++..+..+..+...|+-....+++   ...++..+++.++.+++++....-    +...+.++|+-.++.+.+
T Consensus        32 ~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   32 LASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            333444444444444444444443333332   233444556666666666655444    344455555555554443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>cd00094 HX Hemopexin-like repeats

Probab=91.93  E-value=8.7  Score=34.18  Aligned_cols=155  Identities=12%  Similarity=0.084  Sum_probs=74.4

Q ss_pred             eEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcE--EEeecC-CCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcE
Q 010571          146 SVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW--DAVEVT-QTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDL  221 (507)
Q Consensus       146 ~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~-g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i  221 (507)
                      +++...+.+|+|-|.        .++.|+......  ..+... +.+|.  .--++....+ +.+|+|-|       +..
T Consensus        11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg-------~~y   73 (194)
T cd00094          11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKG-------DKY   73 (194)
T ss_pred             eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECC-------CEE
Confidence            344456889999763        366666541111  111110 01221  1223434443 77999987       568


Q ss_pred             EEEECCCCcEEeeeecC--CCCC-CCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCC----C
Q 010571          222 HVLDLQTNEWSQPEIKG--DLVT-GRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN----P  292 (507)
Q Consensus       222 ~~~d~~~~~W~~~~~~~--~~p~-~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~----p  292 (507)
                      |+|+..+.....+....  ..|. +..-.++...  ++++|+|-|.       ..|.||..+.+...  ..|...    +
T Consensus        74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v~~--~yP~~i~~~w~  144 (194)
T cd00094          74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD-------KYWRYDEKTQKMDP--GYPKLIETDFP  144 (194)
T ss_pred             EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC-------EEEEEeCCCccccC--CCCcchhhcCC
Confidence            88886653332221111  1111 1111233333  5789999772       57888876554321  011000    0


Q ss_pred             CCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571          293 LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                      ....+..+ ++.. .++.+|.|-|      +..|.||..+..
T Consensus       145 g~p~~ida-a~~~-~~~~~yfF~g------~~y~~~d~~~~~  178 (194)
T cd00094         145 GVPDKVDA-AFRW-LDGYYYFFKG------DQYWRFDPRSKE  178 (194)
T ss_pred             CcCCCcce-eEEe-CCCcEEEEEC------CEEEEEeCccce
Confidence            00011112 2222 2247888887      568999987553

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.88  E-value=2  Score=45.89  Aligned_cols=35  Identities=14%  Similarity=0.353  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCc
Q 010571          464 SQTIENEVQILRQQKSAFEQEMERATSVQTQGSGG  498 (507)
Q Consensus       464 ~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (507)
                      .+.|+.|++-+.++++.++-++|=+++-.+.+|++
T Consensus       327 aesLQ~eve~lkEr~deletdlEILKaEmeekG~~  361 (1243)
T KOG0971|consen  327 AESLQQEVEALKERVDELETDLEILKAEMEEKGSD  361 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34677777888888888777776665555544443

>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

Probab=91.78  E-value=2.3  Score=42.76  Aligned_cols=57  Identities=19%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             hhhhhHHHHHHH-HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhc-ccccCCCceee
Q 010571          445 SRCFKLEAQIAE-LQKMLESSQTIENEVQILRQQKSAFEQEMERATS-VQTQGSGGVWR  501 (507)
Q Consensus       445 ~~~~~~e~~~~e-~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  501 (507)
                      +..+++++++.+ +.+..++...+.+++..++...+++.++...+.. +.-.+.+|.||
T Consensus       139 ~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG  197 (448)
T COG1322         139 EVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG  197 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence            333444444444 4444555556667777777777777777554332 33488999998

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.77  E-value=5.1  Score=31.17  Aligned_cols=31  Identities=35%  Similarity=0.447  Sum_probs=18.2

Q ss_pred             HHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh
Q 010571          433 LSSVQGQLVAERSRCFKLEAQIAELQKMLES  463 (507)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~  463 (507)
                      ++.++.+......++.+++.++.++.+.+..
T Consensus        46 l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen   46 LQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555556666677666666665544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=91.67  E-value=15  Score=36.43  Aligned_cols=275  Identities=15%  Similarity=0.094  Sum_probs=127.3

Q ss_pred             CCCeEeeCCCCC-eEEeccCCCCCCccccceEEEE---CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCc
Q 010571            3 SGSWHLELPYDL-WVTLPVSGARPSPRYKHAAAVF---DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~   78 (507)
                      +.++++|..+.+ -.+++..+      .-|....+   +..+|+.+. +     ..+.++|+.+++-..--..       
T Consensus        16 ~~v~viD~~t~~~~~~i~~~~------~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~v~~i~~-------   76 (369)
T PF02239_consen   16 GSVAVIDGATNKVVARIPTGG------APHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKVVATIKV-------   76 (369)
T ss_dssp             TEEEEEETTT-SEEEEEE-ST------TEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSEEEEEE--------
T ss_pred             CEEEEEECCCCeEEEEEcCCC------CceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccEEEEEec-------
Confidence            345677777654 33444211      12544433   567999853 2     3688999999873322111       


Q ss_pred             cccCCccCCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC----CCcccceEEEECCE
Q 010571           79 TEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP----VARGGHSVTLVGSR  153 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p----~~r~~~~~~~~~~~  153 (507)
                                 +...++++. -+++.++.+.+.     .+.+.++|..|.+=...-+.+.++    .+|...-.....+.
T Consensus        77 -----------G~~~~~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~  140 (369)
T PF02239_consen   77 -----------GGNPRGIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP  140 (369)
T ss_dssp             -----------SSEEEEEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred             -----------CCCcceEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence                       233344433 355544444433     335889998887544332222222    23332222223445


Q ss_pred             EEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          154 LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       154 l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      .|++.-.+     .+.++..|....+=....   .....+.-|-+....+++.|+.+-.    ..|.+-.+|..++.-..
T Consensus       141 ~fVv~lkd-----~~~I~vVdy~d~~~~~~~---~i~~g~~~~D~~~dpdgry~~va~~----~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  141 EFVVNLKD-----TGEIWVVDYSDPKNLKVT---TIKVGRFPHDGGFDPDGRYFLVAAN----GSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             EEEEEETT-----TTEEEEEETTTSSCEEEE---EEE--TTEEEEEE-TTSSEEEEEEG----GGTEEEEEETTTTEEEE
T ss_pred             EEEEEEcc-----CCeEEEEEecccccccee---eecccccccccccCcccceeeeccc----ccceeEEEeeccceEEE
Confidence            56654332     446888887654321111   1233555666666666545544322    23688899998887655


Q ss_pred             eeecCCCCCCCcceEEEEEC-CEEEEEeccCCCCCcceEEEEE----cCcCeeEEeccCCCCCCCCCCCCceEEEEEcCc
Q 010571          234 PEIKGDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLN----MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE  308 (507)
Q Consensus       234 ~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~d~~~~d----~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~  308 (507)
                      .-..+..|.+.......-.. +.++..+|....  .....--+    .....|+.+..++..      +..+.....++.
T Consensus       209 ~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~--~~~~ig~~~v~v~d~~~wkvv~~I~~~------G~glFi~thP~s  280 (369)
T PF02239_consen  209 LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF--AIPLIGTDPVSVHDDYAWKVVKTIPTQ------GGGLFIKTHPDS  280 (369)
T ss_dssp             EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS--EEEEEE--TTT-STTTBTSEEEEEE-S------SSS--EE--TT-
T ss_pred             EeeccccccccccccccCCCcceEEeeccccce--ecccccCCccccchhhcCeEEEEEECC------CCcceeecCCCC
Confidence            33335445443332322222 234555443211  00111122    233568777665432      223445566777


Q ss_pred             eEEEEEcccCCCcCCeEEEEECCCC
Q 010571          309 HHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       309 ~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      .++++---. +.....+.++|..+.
T Consensus       281 ~~vwvd~~~-~~~~~~v~viD~~tl  304 (369)
T PF02239_consen  281 RYVWVDTFL-NPDADTVQVIDKKTL  304 (369)
T ss_dssp             SEEEEE-TT--SSHT-EEEEECCGT
T ss_pred             ccEEeeccC-CCCCceEEEEECcCc
Confidence            888884211 122678999998765

...

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=91.66  E-value=3.1  Score=41.12  Aligned_cols=43  Identities=12%  Similarity=0.072  Sum_probs=22.3

Q ss_pred             chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh
Q 010571          387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  429 (507)
                      +..+..++...+.+....+.....+....++.|..-+.++...
T Consensus       148 ~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~  190 (420)
T COG4942         148 LAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTL  190 (420)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555554555555555555555555555554433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.59  E-value=3.9  Score=37.74  Aligned_cols=77  Identities=29%  Similarity=0.382  Sum_probs=43.0

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh-------hhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-------RSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKS  479 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~  479 (507)
                      +.......+...+..+.+++.++..+...+..+       ..+....+..+..++++++...    ..++....|.+++.
T Consensus       128 ~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id  207 (237)
T PF00261_consen  128 ELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEID  207 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444445555555544444333       2333455566666666666555    56667777777777


Q ss_pred             HHHHHHHH
Q 010571          480 AFEQEMER  487 (507)
Q Consensus       480 ~~~~~~~~  487 (507)
                      .++.++..
T Consensus       208 ~le~eL~~  215 (237)
T PF00261_consen  208 RLEDELEK  215 (237)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=91.54  E-value=1.3  Score=44.28  Aligned_cols=12  Identities=17%  Similarity=0.551  Sum_probs=4.5

Q ss_pred             HHHHHHHhHHHH
Q 010571          470 EVQILRQQKSAF  481 (507)
Q Consensus       470 e~~~~~~~~~~~  481 (507)
                      ++++++++++++
T Consensus       117 ~~~ql~~~~~~~  128 (472)
T TIGR03752       117 EIEQLKSERQQL  128 (472)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=91.50  E-value=1.7  Score=47.83  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhh
Q 010571          466 TIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      +.+.++.+|.+.++..+.++++..
T Consensus       444 ~~~~ei~~L~~~~~~~~~~l~e~~  467 (1293)
T KOG0996|consen  444 KCQTEIEQLEELLEKEERELDEIL  467 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555554444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.49  E-value=3.6  Score=38.78  Aligned_cols=11  Identities=27%  Similarity=0.637  Sum_probs=4.4

Q ss_pred             HHhhHHHHHHH
Q 010571          391 IDAIKEDKRVL  401 (507)
Q Consensus       391 ~~~l~~~~~~~  401 (507)
                      +.+++.++..+
T Consensus        86 l~~l~keKe~L   96 (310)
T PF09755_consen   86 LQQLKKEKETL   96 (310)
T ss_pred             HHHHHHHHHHH
Confidence            33444444333

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=91.43  E-value=3  Score=40.90  Aligned_cols=44  Identities=18%  Similarity=0.394  Sum_probs=26.1

Q ss_pred             hhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHH
Q 010571          388 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK  431 (507)
Q Consensus       388 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  431 (507)
                      +..+++++.-+..++..+.....+..++...+....+.++..++
T Consensus       219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk  262 (359)
T PF10498_consen  219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK  262 (359)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566676666666666666666666666655555544444433

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=91.43  E-value=14  Score=36.97  Aligned_cols=189  Identities=10%  Similarity=0.095  Sum_probs=95.0

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEE--ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                      +.++++++...+.-+.+..-|     |...-.+-  -++.|++.--.-.+-.....++..+....+...+.        -
T Consensus       106 taDly~v~~e~Ge~kRiTyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Ln--------l  172 (668)
T COG4946         106 TADLYVVPSEDGEAKRITYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLN--------L  172 (668)
T ss_pred             cccEEEEeCCCCcEEEEEEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeecc--------C
Confidence            557999999999888876433     22211111  24556655433222111223343433333333222        1


Q ss_pred             CCceEEEEcCcEEEEEeCCC---------CCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCC
Q 010571          194 YDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN  264 (507)
Q Consensus       194 ~~~~~~~~~~~~l~i~GG~~---------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~  264 (507)
                      .-.+..++.++ +.++|-..         .++....+|+=.....+++++   -+++...+  +-+++++++|.+.-+.+
T Consensus       173 Gpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~---vdl~~~vS--~PmIV~~RvYFlsD~eG  246 (668)
T COG4946         173 GPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKF---VDLDGNVS--SPMIVGERVYFLSDHEG  246 (668)
T ss_pred             CceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeee---eecCCCcC--CceEEcceEEEEecccC
Confidence            12345566788 45554321         112334566655555466664   22322221  33667899999865443


Q ss_pred             CCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCCccc
Q 010571          265 NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIF  341 (507)
Q Consensus       265 ~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~~~~  341 (507)
                         ...+|.-|+..+.-++=.++...-|    ++    +..++...++-.||       ++|.|||.+.+-+...+.
T Consensus       247 ---~GnlYSvdldGkDlrrHTnFtdYY~----R~----~nsDGkrIvFq~~G-------dIylydP~td~lekldI~  305 (668)
T COG4946         247 ---VGNLYSVDLDGKDLRRHTNFTDYYP----RN----ANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDIG  305 (668)
T ss_pred             ---ccceEEeccCCchhhhcCCchhccc----cc----cCCCCcEEEEecCC-------cEEEeCCCcCcceeeecC
Confidence               3456776666554444333332211    11    12334333444455       799999988887766654

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.43  E-value=0.84  Score=40.69  Aligned_cols=62  Identities=16%  Similarity=0.227  Sum_probs=11.9

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA  452 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~  452 (507)
                      +..++..+-.+...+.....+..+++.++......+.+++.++...+..+..+...+.+++.
T Consensus        83 Lael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k  144 (194)
T PF08614_consen   83 LAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNK  144 (194)
T ss_dssp             -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333444444444444444443333333333333333333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=91.43  E-value=1.6  Score=41.72  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=20.8

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  445 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  445 (507)
                      -...|+..|+++-+++.+++++..+.++.++.-++
T Consensus       286 lar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qe  320 (442)
T PF06637_consen  286 LARSLRAGIERVARENSDLQRQKLEAEQGLQASQE  320 (442)
T ss_pred             HHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34456666677777777766666665555544333

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PRK13684 Ycf48-like protein; Provisional

Probab=91.38  E-value=15  Score=35.87  Aligned_cols=198  Identities=9%  Similarity=0.049  Sum_probs=92.4

Q ss_pred             CCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCC
Q 010571           12 YDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP   90 (507)
Q Consensus        12 ~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~   90 (507)
                      -..|+.+......|.  .......+ ++.+|+.|.      ...+++-+-.-.+|..+....                 .
T Consensus       118 G~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~------~G~i~~S~DgG~tW~~~~~~~-----------------~  172 (334)
T PRK13684        118 GKNWTRIPLSEKLPG--SPYLITALGPGTAEMATN------VGAIYRTTDGGKNWEALVEDA-----------------A  172 (334)
T ss_pred             CCCCeEccCCcCCCC--CceEEEEECCCcceeeec------cceEEEECCCCCCceeCcCCC-----------------c
Confidence            358888863211221  22223333 344565554      123444444456898876422                 1


Q ss_pred             ccceeeEEECCEEEEEcccCCCCCCcceEEE-EECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccC
Q 010571           91 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRF-IDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus        91 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~  168 (507)
                      -..+.+....+..|++.|...      .++. .|....+|..+.    .+..+.-++++.. ++.++++|...       
T Consensus       173 g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------  235 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------  235 (334)
T ss_pred             ceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC-------
Confidence            223444444444444433222      1332 234446799885    2333444444443 56788876532       


Q ss_pred             cEEEEE-cC-CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcc
Q 010571          169 DVHFLD-LE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  246 (507)
Q Consensus       169 ~~~~~d-~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  246 (507)
                       ...+. .+ -.+|+.+... ........++++...++.++++|..+      -++.-.-...+|+.+......  +...
T Consensus       236 -~~~~~s~d~G~sW~~~~~~-~~~~~~~l~~v~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~~~--~~~~  305 (334)
T PRK13684        236 -QIRFNDPDDLESWSKPIIP-EITNGYGYLDLAYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGEEV--PSNF  305 (334)
T ss_pred             -EEEEccCCCCCccccccCC-ccccccceeeEEEcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCCCC--Ccce
Confidence             23342 22 3489976421 01011222334444566688877642      122222234589986421222  2234


Q ss_pred             eEEEEE-CCEEEEEec
Q 010571          247 HAGITI-DENWYIVGG  261 (507)
Q Consensus       247 ~~~~~~-~~~l~v~GG  261 (507)
                      +.++.. +++.|+.|.
T Consensus       306 ~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        306 YKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             EEEEEeCCCceEEECC
Confidence            445544 566777664

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=91.36  E-value=1.4  Score=44.69  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=11.5

Q ss_pred             hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHH
Q 010571          428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQ  458 (507)
Q Consensus       428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~  458 (507)
                      .+++.+..+..+.+..+++++.++++.-+++
T Consensus       291 ~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk  321 (581)
T KOG0995|consen  291 HMEKKLEMLKSEIEEKEEEIEKLQKENDELK  321 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=91.34  E-value=3.8  Score=38.70  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=17.9

Q ss_pred             hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571          428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      .+..+|....+++...++.+..+..++.++++++++.
T Consensus       217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~  253 (306)
T PF04849_consen  217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQL  253 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444555555555555555554444

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=91.32  E-value=2  Score=46.37  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHh
Q 010571          467 IENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~~~~~~  488 (507)
                      ++.|..+++.+...|+.++++.
T Consensus       671 ~e~E~~~l~~Ki~~Le~Ele~e  692 (769)
T PF05911_consen  671 LEAEAEELQSKISSLEEELEKE  692 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555443

The function of this family is unknown.

>TIGR01069 mutS2 MutS2 family protein

Probab=91.16  E-value=2.1  Score=46.78  Aligned_cols=9  Identities=22%  Similarity=-0.159  Sum_probs=4.7

Q ss_pred             CCceeeeec
Q 010571          496 SGGVWRWIA  504 (507)
Q Consensus       496 ~~~~~~~~~  504 (507)
                      ..|-.-+|.
T Consensus       626 ~~Gd~V~v~  634 (771)
T TIGR01069       626 KIGDKVRIR  634 (771)
T ss_pred             CCCCEEEEc
Confidence            455555544

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=91.12  E-value=0.75  Score=47.63  Aligned_cols=79  Identities=20%  Similarity=0.151  Sum_probs=33.3

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS  490 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~  490 (507)
                      +...+++++..+.+.++..+++++.--. .+.+-+-+.++++.+.++....+.....+..++++..+++.+..+++++++
T Consensus       106 ~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarq  184 (916)
T KOG0249|consen  106 DLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQ  184 (916)
T ss_pred             hhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444333333222 333333334444444444444444444444444444444444444444433

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=91.04  E-value=2.1  Score=46.87  Aligned_cols=7  Identities=14%  Similarity=-0.476  Sum_probs=2.8

Q ss_pred             Cceeeee
Q 010571          497 GGVWRWI  503 (507)
Q Consensus       497 ~~~~~~~  503 (507)
                      .|-.-++
T Consensus       639 ~Gd~V~v  645 (782)
T PRK00409        639 VGDEVKY  645 (782)
T ss_pred             CCCEEEE
Confidence            3444333

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=90.98  E-value=15  Score=35.15  Aligned_cols=244  Identities=12%  Similarity=0.134  Sum_probs=105.0

Q ss_pred             CCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECC-CCceeEeeeccccccCccccCCccCCC
Q 010571           11 PYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVL   88 (507)
Q Consensus        11 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~-t~~W~~~~~~~~~~~~~~~~~~~~~~p   88 (507)
                      ....|+.+.    .|....-..+..+ .+.-|++|-.       ........ -.+|........             .+
T Consensus         4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~-------------~~   59 (302)
T PF14870_consen    4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLD-------------NP   59 (302)
T ss_dssp             SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S---------------
T ss_pred             cCCCcEEee----cCCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCC-------------cc
Confidence            467899997    3444444444444 4678888752       12222222 247988764321             11


Q ss_pred             CCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCcc
Q 010571           89 PPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLL  167 (507)
Q Consensus        89 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~  167 (507)
                      .....+++...++..|++|...       .++.-.-.-.+|+.+...  .+.+-..+.+..+ ++.++++|..       
T Consensus        60 ~~~~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~-------  123 (302)
T PF14870_consen   60 FDYHLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR-------  123 (302)
T ss_dssp             ---EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT-------
T ss_pred             ceeeEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------
Confidence            1223344555688899887421       133333345689998642  2233333444444 4577776542       


Q ss_pred             CcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcce
Q 010571          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       168 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  247 (507)
                      ..++.=.-.-.+|+.+...    ..-....+....++.+++++..+     +-+...|+-...|....    .+..|.-.
T Consensus       124 G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~----r~~~~riq  190 (302)
T PF14870_consen  124 GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHN----RNSSRRIQ  190 (302)
T ss_dssp             --EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE------SSS-EE
T ss_pred             CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEEc----cCccceeh
Confidence            2344444455689988631    11222334445677666666543     22345677777898853    34445544


Q ss_pred             EEEEE-CCEEEEEeccCCCCCcceEEEEE--cCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccC
Q 010571          248 AGITI-DENWYIVGGGDNNNGCQETIVLN--MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  318 (507)
Q Consensus       248 ~~~~~-~~~l~v~GG~~~~~~~~d~~~~d--~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~  318 (507)
                      ++... ++.++++.  .+.    .+..-+  -...+|.+-. .    |....++.+..+...+.+.+++.||..
T Consensus       191 ~~gf~~~~~lw~~~--~Gg----~~~~s~~~~~~~~w~~~~-~----~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  191 SMGFSPDGNLWMLA--RGG----QIQFSDDPDDGETWSEPI-I----PIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EEEE-TTS-EEEEE--TTT----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             hceecCCCCEEEEe--CCc----EEEEccCCCCcccccccc-C----CcccCceeeEEEEecCCCCEEEEeCCc
Confidence            54444 56777764  111    233333  3455677621 1    223335544444555556889988853

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.94  E-value=14  Score=34.71  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=69.9

Q ss_pred             CCcccc---ceEEEECCEEEEEcCCCC-----------------CccCCceEEEECCCCceeEeeeccccccCccccCCc
Q 010571           25 PSPRYK---HAAAVFDQKLYIVGGSRN-----------------GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL   84 (507)
Q Consensus        25 p~~r~~---~~~~~~~~~lyv~GG~~~-----------------~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~   84 (507)
                      |.||++   |.++..-+.+..|||+-.                 ....+.|..||..+++-+.+-...-           
T Consensus        30 ~~P~SGGDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesi-----------   98 (339)
T PF09910_consen   30 PPPTSGGDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESI-----------   98 (339)
T ss_pred             CCCCCCCccceeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEeccc-----------
Confidence            555553   444444455566787321                 1223568999999887555543221           


Q ss_pred             cCCCCCccceee-EE---ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCc
Q 010571           85 LEVLPPMSDHCM-VK---WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGE  160 (507)
Q Consensus        85 ~~~p~~r~~~~~-~~---~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~  160 (507)
                       ..+..-++-.. ..   +++.||+.=+. ...  .--+|..|..++.=+.+.   .-|...   .+.+.+..+|-+   
T Consensus        99 -h~~~~WaGEVSdIlYdP~~D~LLlAR~D-Gh~--nLGvy~ldr~~g~~~~L~---~~ps~K---G~~~~D~a~F~i---  165 (339)
T PF09910_consen   99 -HDKTKWAGEVSDILYDPYEDRLLLARAD-GHA--NLGVYSLDRRTGKAEKLS---SNPSLK---GTLVHDYACFGI---  165 (339)
T ss_pred             -CCccccccchhheeeCCCcCEEEEEecC-Ccc--eeeeEEEcccCCceeecc---CCCCcC---ceEeeeeEEEec---
Confidence             11111111111 11   15777776432 111  224888898999888776   334332   122223333322   


Q ss_pred             CCCCCccCcEEEEEcCCCcE
Q 010571          161 DRSRKLLNDVHFLDLETMTW  180 (507)
Q Consensus       161 ~~~~~~~~~~~~~d~~t~~W  180 (507)
                      .....-.+.+.+||+.+++|
T Consensus       166 ~~~~~g~~~i~~~Dli~~~~  185 (339)
T PF09910_consen  166 NNFHKGVSGIHCLDLISGKW  185 (339)
T ss_pred             cccccCCceEEEEEccCCeE
Confidence            22222366899999999999

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.92  E-value=1.6  Score=46.64  Aligned_cols=40  Identities=18%  Similarity=0.181  Sum_probs=19.0

Q ss_pred             HhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHH
Q 010571          421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       421 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      .+..+++.+..|+.+++...+.+.+++...|..+.+++++
T Consensus       400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ  439 (1243)
T KOG0971|consen  400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ  439 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444455555555555555554

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.89  E-value=6.7  Score=31.67  Aligned_cols=39  Identities=21%  Similarity=0.363  Sum_probs=17.5

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  429 (507)
                      +..+..+...++..+.....+...+.++|-.+..++++.
T Consensus        25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~   63 (120)
T PF12325_consen   25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL   63 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444455555555555444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=90.84  E-value=2.3  Score=49.46  Aligned_cols=6  Identities=17%  Similarity=0.158  Sum_probs=2.4

Q ss_pred             EEEEcC
Q 010571           40 LYIVGG   45 (507)
Q Consensus        40 lyv~GG   45 (507)
                      +.++-|
T Consensus        25 ~~~i~G   30 (1179)
T TIGR02168        25 ITGIVG   30 (1179)
T ss_pred             cEEEEC
Confidence            334444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.83  E-value=4.5  Score=39.09  Aligned_cols=66  Identities=26%  Similarity=0.424  Sum_probs=29.4

Q ss_pred             HHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH--------HHHHHHHHHHHhHHHHHHH
Q 010571          419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--------TIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       419 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~--------~~e~e~~~~~~~~~~~~~~  484 (507)
                      +.....++.+....++..+.+++.++.+...++..+.+++.++....        .++.++.+++.+.+....+
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e  284 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE  284 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444443333222        4445555555555444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.82  E-value=2  Score=39.69  Aligned_cols=21  Identities=10%  Similarity=0.194  Sum_probs=9.6

Q ss_pred             hhhhhhHHHHHHhhccchhhH
Q 010571          410 TENSRFREKIDEVNSTHSELS  430 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~  430 (507)
                      .+...|...++.++..++..+
T Consensus        36 ~e~~~l~rri~~lE~~le~~e   56 (237)
T PF00261_consen   36 AEVASLQRRIQLLEEELERAE   56 (237)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHH
Confidence            344444444544444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK03629 tolB translocation protein TolB; Provisional

Probab=90.79  E-value=21  Score=36.35  Aligned_cols=190  Identities=10%  Similarity=0.002  Sum_probs=94.8

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++.-..+.....                 ........-+ .+|++......    ..+++.+|..++....
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~-----------------~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPR-----------------HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQ  281 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCC-----------------CcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEE
Confidence            468899998877555443221                 1111122223 45655432211    2359999999988777


Q ss_pred             eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      +..   .+... ......-++ .|++......    ...++.+|+.++.-..+...+.    . ........++..+++.
T Consensus       282 lt~---~~~~~-~~~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~----~-~~~~~~SpDG~~Ia~~  348 (429)
T PRK03629        282 VTD---GRSNN-TEPTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGS----Q-NQDADVSSDGKFMVMV  348 (429)
T ss_pred             ccC---CCCCc-CceEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCC----C-ccCEEECCCCCEEEEE
Confidence            642   11111 111111234 4544332211    3478999998887766642211    1 1122333444344443


Q ss_pred             CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEec
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~  285 (507)
                      +....  ...++.+|+.++.++.+...  .   ........-+++.+++.+..+.  ...+++.+.+...=..++
T Consensus       349 ~~~~g--~~~I~~~dl~~g~~~~Lt~~--~---~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        349 SSNGG--QQHIAKQDLATGGVQVLTDT--F---LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             EccCC--CceEEEEECCCCCeEEeCCC--C---CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEECc
Confidence            33222  24689999999988876421  1   1111223346666766654332  234666676544433343

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=90.78  E-value=2  Score=49.69  Aligned_cols=42  Identities=17%  Similarity=0.351  Sum_probs=17.7

Q ss_pred             hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHH
Q 010571          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS  434 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~  434 (507)
                      .++.+...++..+.......+++.+.+......+++..+++.
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~  645 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREIT  645 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444443333444444444444444444433333

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=90.78  E-value=2.6  Score=47.00  Aligned_cols=6  Identities=67%  Similarity=0.844  Sum_probs=2.4

Q ss_pred             CEEEEE
Q 010571          101 TKLLIL  106 (507)
Q Consensus       101 ~~iyv~  106 (507)
                      +.+|++
T Consensus        87 ~~lyIV   92 (1021)
T PTZ00266         87 QKLYIL   92 (1021)
T ss_pred             CEEEEE
Confidence            344443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=90.75  E-value=2.4  Score=41.73  Aligned_cols=29  Identities=10%  Similarity=0.291  Sum_probs=12.6

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQ  439 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~  439 (507)
                      ++.++...++.+.+.+...++.|++-+.+
T Consensus       384 EKnd~~k~lqnLqe~la~tqk~LqEsr~e  412 (527)
T PF15066_consen  384 EKNDIEKTLQNLQEALANTQKHLQESRNE  412 (527)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444444444444444444443333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=90.75  E-value=1.8  Score=45.04  Aligned_cols=49  Identities=22%  Similarity=0.385  Sum_probs=28.8

Q ss_pred             HhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571          431 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       431 ~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~  479 (507)
                      ..+...+.++..++.++..++.++++.++++......+.+..+++++.+
T Consensus       317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~  365 (498)
T TIGR03007       317 IELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYE  365 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3444445555555666666666666666666655555555555555554

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=90.67  E-value=13  Score=33.97  Aligned_cols=186  Identities=16%  Similarity=0.145  Sum_probs=82.8

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      ++..+++|+.      ...+.+||..++......   ... ...-.++.... +.+++.|+.      .+.+..||+.+.
T Consensus        62 ~~~~l~~~~~------~~~i~i~~~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~  125 (289)
T cd00200          62 DGTYLASGSS------DKTIRLWDLETGECVRTL---TGH-TSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETG  125 (289)
T ss_pred             CCCEEEEEcC------CCeEEEEEcCcccceEEE---ecc-CCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCc
Confidence            3445566654      234888888875322221   101 11112222222 356666652      236889998755


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCC-cceEEEEE-CCEE
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR-AGHAGITI-DENW  256 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r-~~~~~~~~-~~~l  256 (507)
                      +-...-.    .....-.++....++.+++.|+.+     ..+.+||+.+..-...     ..... .-.++... ++..
T Consensus       126 ~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~  191 (289)
T cd00200         126 KCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVAT-----LTGHTGEVNSVAFSPDGEK  191 (289)
T ss_pred             EEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccccccee-----EecCccccceEEECCCcCE
Confidence            4333221    111112233333434455444422     4688898865432211     11111 11122222 3335


Q ss_pred             EEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          257 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      +++++.+     ..+.+||+.+.....  .+...      ......+....+..+++.++.+    ..+..|++..
T Consensus       192 l~~~~~~-----~~i~i~d~~~~~~~~--~~~~~------~~~i~~~~~~~~~~~~~~~~~~----~~i~i~~~~~  250 (289)
T cd00200         192 LLSSSSD-----GTIKLWDLSTGKCLG--TLRGH------ENGVNSVAFSPDGYLLASGSED----GTIRVWDLRT  250 (289)
T ss_pred             EEEecCC-----CcEEEEECCCCceec--chhhc------CCceEEEEEcCCCcEEEEEcCC----CcEEEEEcCC
Confidence            6666542     247788887643322  12110      1122223333334566655533    4577777654

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.51  E-value=3.9  Score=38.14  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=36.2

Q ss_pred             HHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          408 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       408 ~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      -..+..+|..++..++++++.++...+..+..+..+++++.++++++.++++-.+++.
T Consensus        47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~  104 (251)
T PF11932_consen   47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV  104 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566666666666666666666666666666666666666666666666555555

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=90.40  E-value=14  Score=33.66  Aligned_cols=71  Identities=24%  Similarity=0.231  Sum_probs=40.8

Q ss_pred             eEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCE-EEEEcCcCCCCCccCcEEEEE
Q 010571           96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus        96 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-l~~~GG~~~~~~~~~~~~~~d  174 (507)
                      +..-.|.|+..||.       ..++..|+.+++.+..- .|   ..-+-|+.+.-+.. =++-|+-++      .+-+.|
T Consensus       122 ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~-rG---HtDYvH~vv~R~~~~qilsG~EDG------tvRvWd  184 (325)
T KOG0649|consen  122 LDPSENSILFAGGD-------GVIYQVDLEDGRIQREY-RG---HTDYVHSVVGRNANGQILSGAEDG------TVRVWD  184 (325)
T ss_pred             eccCCCcEEEecCC-------eEEEEEEecCCEEEEEE-cC---CcceeeeeeecccCcceeecCCCc------cEEEEe
Confidence            33357899999983       35899999999876653 11   11223344332322 233344332      477788


Q ss_pred             cCCCcEEEe
Q 010571          175 LETMTWDAV  183 (507)
Q Consensus       175 ~~t~~W~~~  183 (507)
                      +.|.+-..+
T Consensus       185 ~kt~k~v~~  193 (325)
T KOG0649|consen  185 TKTQKHVSM  193 (325)
T ss_pred             ccccceeEE
Confidence            888765443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.39  E-value=4.8  Score=38.94  Aligned_cols=6  Identities=33%  Similarity=0.722  Sum_probs=2.5

Q ss_pred             HHHHHH
Q 010571          480 AFEQEM  485 (507)
Q Consensus       480 ~~~~~~  485 (507)
                      +|+.|+
T Consensus       294 ~Ld~EI  299 (312)
T PF00038_consen  294 ALDAEI  299 (312)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=90.37  E-value=2.8  Score=49.62  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      +++++...+..+++.+.++++
T Consensus      1122 K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.36  E-value=2.4  Score=45.74  Aligned_cols=12  Identities=25%  Similarity=0.376  Sum_probs=7.8

Q ss_pred             EEECCEEEEEcC
Q 010571           34 AVFDQKLYIVGG   45 (507)
Q Consensus        34 ~~~~~~lyv~GG   45 (507)
                      +..++.||+|-+
T Consensus        38 ~~~d~~L~vWd~   49 (717)
T PF10168_consen   38 ACRDGDLFVWDS   49 (717)
T ss_pred             EEeCCEEEEEEC
Confidence            334777777766

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.36  E-value=20  Score=35.54  Aligned_cols=153  Identities=14%  Similarity=0.042  Sum_probs=82.1

Q ss_pred             EEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCC
Q 010571           34 AVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK  111 (507)
Q Consensus        34 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  111 (507)
                      +..++.+|+...      ...++.+|+.+++  |........                .........-+++||+-.... 
T Consensus        65 ~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~~~----------------~~~~~~~~~~~G~i~~g~~~g-  121 (370)
T COG1520          65 ADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLGAV----------------AQLSGPILGSDGKIYVGSWDG-  121 (370)
T ss_pred             EeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcCcc----------------eeccCceEEeCCeEEEecccc-
Confidence            556888888611      1279999999987  865443100                111111222267766654322 


Q ss_pred             CCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCC--cEEEeecCC
Q 010571          112 KSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQ  187 (507)
Q Consensus       112 ~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g  187 (507)
                            .++.||..++  .|......   . ++..-..+..++.+|+..       ..+.++.+|..++  .|..-...+
T Consensus       122 ------~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~  184 (370)
T COG1520         122 ------KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP  184 (370)
T ss_pred             ------eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc
Confidence                  5999999655  57766532   1 333333344445555542       1346899988765  587554322


Q ss_pred             CCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEe
Q 010571          188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQ  233 (507)
Q Consensus       188 ~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~  233 (507)
                       .+ .+.....+ +.++.+| +|..+  . ...++.+|+.+++  |..
T Consensus       185 -~~-~~~~~~~~-~~~~~vy-~~~~~--~-~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         185 -LS-LSIYGSPA-IASGTVY-VGSDG--Y-DGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             -cc-cccccCce-eecceEE-EecCC--C-cceEEEEEccCCcEeeee
Confidence             12 22222222 4466344 44332  1 2368999987664  774

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=90.25  E-value=1.1  Score=45.06  Aligned_cols=7  Identities=14%  Similarity=0.397  Sum_probs=2.7

Q ss_pred             HHHHHHH
Q 010571          470 EVQILRQ  476 (507)
Q Consensus       470 e~~~~~~  476 (507)
                      +++|.|.
T Consensus       136 ~ieqaq~  142 (907)
T KOG2264|consen  136 EIEQAQR  142 (907)
T ss_pred             HHHHHHH
Confidence            3333333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=90.09  E-value=2.9  Score=48.32  Aligned_cols=6  Identities=17%  Similarity=0.241  Sum_probs=2.7

Q ss_pred             CCEEEE
Q 010571          253 DENWYI  258 (507)
Q Consensus       253 ~~~l~v  258 (507)
                      ..+++.
T Consensus       101 ~Rri~r  106 (1163)
T COG1196         101 TRRIYR  106 (1163)
T ss_pred             EEEEEE
Confidence            344444

>PTZ00421 coronin; Provisional

Probab=90.08  E-value=26  Score=36.34  Aligned_cols=156  Identities=15%  Similarity=0.135  Sum_probs=70.5

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE-ECCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~  179 (507)
                      +.+++.||.+      ..+.++|+.++.-...-.  .....  -.++.. .++.+++.|+.+      ..+.+||+.+++
T Consensus       138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l~--~h~~~--V~sla~spdG~lLatgs~D------g~IrIwD~rsg~  201 (493)
T PTZ00421        138 MNVLASAGAD------MVVNVWDVERGKAVEVIK--CHSDQ--ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGT  201 (493)
T ss_pred             CCEEEEEeCC------CEEEEEECCCCeEEEEEc--CCCCc--eEEEEEECCCCEEEEecCC------CEEEEEECCCCc
Confidence            4577777643      248888988764322110  11111  112222 256677777653      358899998765


Q ss_pred             EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEE
Q 010571          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWY  257 (507)
Q Consensus       180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~  257 (507)
                      -... ..+. ...+. ..++...++..++..|.+.. .-..+.+||+.+..-.. .. .... ......+..+  ++.++
T Consensus       202 ~v~t-l~~H-~~~~~-~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~-~~-~~~d-~~~~~~~~~~d~d~~~L  274 (493)
T PTZ00421        202 IVSS-VEAH-ASAKS-QRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPY-ST-VDLD-QSSALFIPFFDEDTNLL  274 (493)
T ss_pred             EEEE-EecC-CCCcc-eEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCce-eE-eccC-CCCceEEEEEcCCCCEE
Confidence            3211 1111 11111 11222333334444453321 12468888886533110 00 0000 0111122233  45666


Q ss_pred             EEeccCCCCCcceEEEEEcCcCeeEE
Q 010571          258 IVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       258 v~GG~~~~~~~~d~~~~d~~~~~W~~  283 (507)
                      ++||...    ..+.+||+.+.....
T Consensus       275 ~lggkgD----g~Iriwdl~~~~~~~  296 (493)
T PTZ00421        275 YIGSKGE----GNIRCFELMNERLTF  296 (493)
T ss_pred             EEEEeCC----CeEEEEEeeCCceEE
Confidence            6766321    146778877766544

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=90.07  E-value=4  Score=41.34  Aligned_cols=9  Identities=0%  Similarity=0.113  Sum_probs=3.3

Q ss_pred             HHHhHHHHH
Q 010571          474 LRQQKSAFE  482 (507)
Q Consensus       474 ~~~~~~~~~  482 (507)
                      +++++...+
T Consensus       251 ~~~~l~~~~  259 (423)
T TIGR01843       251 AQARLAELR  259 (423)
T ss_pred             HHHHHHHHH
Confidence            333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.04  E-value=2.8  Score=46.31  Aligned_cols=7  Identities=57%  Similarity=0.790  Sum_probs=4.3

Q ss_pred             EEEEEeC
Q 010571          205 YLIVFGG  211 (507)
Q Consensus       205 ~l~i~GG  211 (507)
                      .|||||=
T Consensus       128 mLFVFGf  134 (1293)
T KOG0996|consen  128 MLFVFGF  134 (1293)
T ss_pred             HHHHhhh
Confidence            4667764

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.00  E-value=1.5  Score=48.19  Aligned_cols=43  Identities=14%  Similarity=0.163  Sum_probs=23.2

Q ss_pred             HhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571          437 QGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       437 ~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~  479 (507)
                      +.+.+..+.++..++.++.++++++.+....+.+..+|+++.+
T Consensus       344 ~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~  386 (754)
T TIGR01005       344 LMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA  386 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHH
Confidence            3344444555555666666666665555555555555555444

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.83  E-value=2.6  Score=38.92  Aligned_cols=55  Identities=20%  Similarity=0.387  Sum_probs=25.8

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      +...++.+|+.+..++++...++.+.+.++.+.+..+.+++.+|.++++.+.+.+
T Consensus        46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~  100 (265)
T COG3883          46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ  100 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=89.78  E-value=24  Score=35.66  Aligned_cols=183  Identities=11%  Similarity=0.090  Sum_probs=97.2

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~  196 (507)
                      ++|++|+.++.=+.+.   ..+ .........-++ +|++.-..++    ..+++.+|+.++.++.+..   .+.  ...
T Consensus       214 ~Iyv~dl~tg~~~~lt---~~~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~---~~~--~d~  280 (419)
T PRK04043        214 TLYKYNLYTGKKEKIA---SSQ-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITN---YPG--IDV  280 (419)
T ss_pred             EEEEEECCCCcEEEEe---cCC-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEccc---CCC--ccC
Confidence            6999999888766664   211 111111122233 5555433322    3579999999999888753   121  122


Q ss_pred             eEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCC----CcceE
Q 010571          197 SAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN----GCQET  271 (507)
Q Consensus       197 ~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~----~~~d~  271 (507)
                      ......+ ..|++.....+   ..+|+++|+.++..+.+...+.     .. .....+++.+++-......    ...++
T Consensus       281 ~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I  351 (419)
T PRK04043        281 NGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NN-SSVSTYKNYIVYSSRETNNEFGKNTFNL  351 (419)
T ss_pred             ccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cC-ceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence            2233333 34655543322   2589999999998877643222     11 2233344433333322211    23589


Q ss_pred             EEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       272 ~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      +++|+.+..+..|.....       ...  ....+++..|+.....  .....++.+++..+
T Consensus       352 ~v~d~~~g~~~~LT~~~~-------~~~--p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~  402 (419)
T PRK04043        352 YLISTNSDYIRRLTANGV-------NQF--PRFSSDGGSIMFIKYL--GNQSALGIIRLNYN  402 (419)
T ss_pred             EEEECCCCCeEECCCCCC-------cCC--eEECCCCCEEEEEEcc--CCcEEEEEEecCCC
Confidence            999999998888755311       111  2233344444444332  22456888887654

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.75  E-value=2.1  Score=46.13  Aligned_cols=43  Identities=14%  Similarity=0.255  Sum_probs=17.6

Q ss_pred             HHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHH
Q 010571          417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK  459 (507)
Q Consensus       417 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~  459 (507)
                      .++++++.++.+.+.+++...++....+.++.+++..+.++++
T Consensus       209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~  251 (650)
T TIGR03185       209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK  251 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444333444444444444444444444444443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.58  E-value=3.2  Score=44.75  Aligned_cols=8  Identities=25%  Similarity=0.879  Sum_probs=3.2

Q ss_pred             EEEEcccC
Q 010571          103 LLILGGHY  110 (507)
Q Consensus       103 iyv~GG~~  110 (507)
                      +.+++|.+
T Consensus        30 ~~~i~G~N   37 (650)
T TIGR03185        30 IILIGGLN   37 (650)
T ss_pred             EEEEECCC
Confidence            33344433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=89.56  E-value=8.2  Score=34.24  Aligned_cols=50  Identities=12%  Similarity=0.116  Sum_probs=21.5

Q ss_pred             hhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571          413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       413 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      .+|.+.|..+..++..+...+...+........++.+.+.++...+.+++
T Consensus        57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~  106 (194)
T PF15619_consen   57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELK  106 (194)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555444444444444444444334444444444433333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=89.45  E-value=7.1  Score=37.30  Aligned_cols=27  Identities=15%  Similarity=0.326  Sum_probs=14.6

Q ss_pred             HHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571          461 LESSQTIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       461 ~~~~~~~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      +.+++++.++.++++...+++.+|.+|
T Consensus       132 V~qLEk~~~q~~qLe~d~qs~lDEkeE  158 (319)
T PF09789_consen  132 VEQLEKLREQIEQLERDLQSLLDEKEE  158 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333345555566666666655555544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=89.40  E-value=22  Score=34.53  Aligned_cols=189  Identities=14%  Similarity=0.080  Sum_probs=84.0

Q ss_pred             CCCCeEeeCCC-CCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECC-CCceeEeeeccccccC
Q 010571            2 DSGSWHLELPY-DLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDAD   77 (507)
Q Consensus         2 ~~~~~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~-t~~W~~~~~~~~~~~~   77 (507)
                      +.+...||+.+ ..++.+..   .+.....+.++..  +..||+.+. .    ...+..|+.. ++.+..+.....    
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~-~----~~~i~~~~~~~~g~l~~~~~~~~----   78 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVR-P----EFRVLSYRIADDGALTFAAESPL----   78 (330)
T ss_pred             CCCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEEC-C----CCcEEEEEECCCCceEEeeeecC----
Confidence            34566777753 56665542   2222222333332  456777543 1    2567777775 456655443211    


Q ss_pred             ccccCCccCCCCCccceeeEEECC-EEEEEcccCCCCCCcceEEEEECCCC-cE-EEeecCCCCCCCcccceEEEE-CC-
Q 010571           78 KTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKKSSDSMIVRFIDLETN-LC-GVMETSGKVPVARGGHSVTLV-GS-  152 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~-~W-~~~~~~g~~p~~r~~~~~~~~-~~-  152 (507)
                                 .....|.+..-++ .||+.. ..     .+.+.+|++.+. .. ....   ..+.....|.++.. ++ 
T Consensus        79 -----------~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g~  138 (330)
T PRK11028         79 -----------PGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDNR  138 (330)
T ss_pred             -----------CCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCCC
Confidence                       0111233333344 455543 22     234777777532 11 1121   11221222333333 33 


Q ss_pred             EEEEEcCcCCCCCccCcEEEEEcCCCc-EEEee-cCCCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECC--
Q 010571          153 RLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVE-VTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQ--  227 (507)
Q Consensus       153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~-~~g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~--  227 (507)
                      .+|+..-      ..+.+.+||+.+.. ..... ..-..+.+..-+.++...+ .++|+....     .+.+.+|++.  
T Consensus       139 ~l~v~~~------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~  207 (330)
T PRK11028        139 TLWVPCL------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDP  207 (330)
T ss_pred             EEEEeeC------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCC
Confidence            5665432      14579999987632 21100 0001111111223344444 467775432     3677777775  


Q ss_pred             CCcEEe
Q 010571          228 TNEWSQ  233 (507)
Q Consensus       228 ~~~W~~  233 (507)
                      ++..+.
T Consensus       208 ~~~~~~  213 (330)
T PRK11028        208 HGEIEC  213 (330)
T ss_pred             CCCEEE
Confidence            445544

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.39  E-value=8  Score=30.12  Aligned_cols=21  Identities=14%  Similarity=0.415  Sum_probs=8.6

Q ss_pred             hhhhHHHHHHhhccchhhHHh
Q 010571          412 NSRFREKIDEVNSTHSELSKE  432 (507)
Q Consensus       412 ~~~l~~~~~~~~~~~~~~~~e  432 (507)
                      ...|+..|+..+....++.++
T Consensus        18 La~Le~slE~~K~S~~eL~kq   38 (107)
T PF09304_consen   18 LASLERSLEDEKTSQGELAKQ   38 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHh
Confidence            333444444444444444333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=89.28  E-value=3.6  Score=48.18  Aligned_cols=11  Identities=9%  Similarity=0.135  Sum_probs=4.3

Q ss_pred             HHHhhcccccc
Q 010571          356 AYALAKSEKLD  366 (507)
Q Consensus       356 ~~~~~~~~~~~  366 (507)
                      .|.+..+..+.
T Consensus       258 lFk~lI~~~~~  268 (1486)
T PRK04863        258 LFKHLITESTN  268 (1486)
T ss_pred             HHHHHhhhhhh
Confidence            34444443333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=89.26  E-value=5.3  Score=42.23  Aligned_cols=52  Identities=19%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      .|.+.++.+...|+....+...+...|+.+........+++++.|.+++.++
T Consensus        15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~   66 (617)
T PF15070_consen   15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM   66 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566666666666665555555555665555555555555555555554443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.24  E-value=6.2  Score=37.79  Aligned_cols=31  Identities=19%  Similarity=0.346  Sum_probs=12.2

Q ss_pred             hhhhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571          412 NSRFREKIDEVNSTHSELSKELSSVQGQLVA  442 (507)
Q Consensus       412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~  442 (507)
                      ...++..++...+++++.++++.+.+..++.
T Consensus        72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~  102 (302)
T PF10186_consen   72 LERLRERIERLRKRIEQKRERLEELRESLEQ  102 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444443333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.24  E-value=3.7  Score=29.84  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=7.6

Q ss_pred             HHHHhhccchhhHHhHHHHHh
Q 010571          418 KIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       418 ~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      +|+..-..+.-+..|+.+.++
T Consensus        12 KIqqAvdtI~LLqmEieELKe   32 (79)
T PRK15422         12 KVQQAIDTITLLQMEIEELKE   32 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>TIGR02977 phageshock_pspA phage shock protein A

Probab=89.20  E-value=6.2  Score=35.89  Aligned_cols=47  Identities=4%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             cchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh
Q 010571          386 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  432 (507)
Q Consensus       386 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e  432 (507)
                      .+.+++..+.......+..+.........+++++.......++++..
T Consensus        28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~   74 (219)
T TIGR02977        28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK   74 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666667777777777777777766544

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PRK10698 phage shock protein PspA; Provisional

Probab=89.00  E-value=6.4  Score=35.83  Aligned_cols=48  Identities=15%  Similarity=0.241  Sum_probs=34.9

Q ss_pred             ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh
Q 010571          385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  432 (507)
Q Consensus       385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e  432 (507)
                      ..+..+++.++.....++..+.........+++++...+...++|++.
T Consensus        27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~k   74 (222)
T PRK10698         27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEK   74 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666777777777777777777777778888888888777777554

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=88.99  E-value=8.9  Score=36.25  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=16.0

Q ss_pred             hhhhhHHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHH
Q 010571          445 SRCFKLEAQIAELQKMLESSQ-----TIENEVQILRQQKS  479 (507)
Q Consensus       445 ~~~~~~e~~~~e~~~~~~~~~-----~~e~e~~~~~~~~~  479 (507)
                      +++.+++.+..+++..+.+.+     +|.+.+..+..++.
T Consensus       113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~  152 (310)
T PF09755_consen  113 RKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS  152 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445554444433     44445554444333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=88.89  E-value=11  Score=33.40  Aligned_cols=19  Identities=21%  Similarity=0.431  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHhHHHHHHHH
Q 010571          467 IENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~~~  485 (507)
                      ++.+...++.+++.+.+.+
T Consensus       169 ~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  169 AQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=88.87  E-value=4.5  Score=43.19  Aligned_cols=59  Identities=17%  Similarity=0.282  Sum_probs=38.6

Q ss_pred             cchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhh
Q 010571          386 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER  444 (507)
Q Consensus       386 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  444 (507)
                      .+...+..++.+.+..+..+.....+.++|....+.+....+..+.+...++.++...+
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K   89 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK   89 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777777777777777777777777777777766655555555544443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.75  E-value=28  Score=34.86  Aligned_cols=179  Identities=16%  Similarity=0.146  Sum_probs=87.6

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  115 (507)
                      .++.++++|+-+     .-+..+|..+..- .....+..              --...-++...+++|++.||++..   
T Consensus       121 ~d~t~l~s~sDd-----~v~k~~d~s~a~v-~~~l~~ht--------------DYVR~g~~~~~~~hivvtGsYDg~---  177 (487)
T KOG0310|consen  121 QDNTMLVSGSDD-----KVVKYWDLSTAYV-QAELSGHT--------------DYVRCGDISPANDHIVVTGSYDGK---  177 (487)
T ss_pred             cCCeEEEecCCC-----ceEEEEEcCCcEE-EEEecCCc--------------ceeEeeccccCCCeEEEecCCCce---
Confidence            478888888833     2345566666552 22222211              112222334457899999998754   


Q ss_pred             cceEEEEECCCC-cEEEeecCCCCCCCcccceEEEE-CCE-EEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          116 SMIVRFIDLETN-LCGVMETSGKVPVARGGHSVTLV-GSR-LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~~-~~~-l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                         +-.||+.+. .|..--.- ..|..    ..+++ ++. |...||        |.+-++|+.++.=.... ..+  ..
T Consensus       178 ---vrl~DtR~~~~~v~elnh-g~pVe----~vl~lpsgs~iasAgG--------n~vkVWDl~~G~qll~~-~~~--H~  238 (487)
T KOG0310|consen  178 ---VRLWDTRSLTSRVVELNH-GCPVE----SVLALPSGSLIASAGG--------NSVKVWDLTTGGQLLTS-MFN--HN  238 (487)
T ss_pred             ---EEEEEeccCCceeEEecC-CCcee----eEEEcCCCCEEEEcCC--------CeEEEEEecCCceehhh-hhc--cc
Confidence               677888776 33322111 11211    12223 223 334444        35777777644321110 000  11


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN  265 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~  265 (507)
                      ..--++....++.-++.||.+.     .+-+||.  ..|+.+.. -..|.|.-. .++.-++.-+++|..++.
T Consensus       239 KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~--t~~Kvv~s-~~~~~pvLs-iavs~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  239 KTVTCLRLASDSTRLLSGSLDR-----HVKVFDT--TNYKVVHS-WKYPGPVLS-IAVSPDDQTVVIGMSNGL  302 (487)
T ss_pred             ceEEEEEeecCCceEeeccccc-----ceEEEEc--cceEEEEe-eecccceee-EEecCCCceEEEecccce
Confidence            1111233344555677888764     4678873  44555432 223444332 122236778888886654

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=88.74  E-value=3.1  Score=43.58  Aligned_cols=11  Identities=27%  Similarity=0.510  Sum_probs=5.4

Q ss_pred             ECCEEEEEccc
Q 010571           99 WGTKLLILGGH  109 (507)
Q Consensus        99 ~~~~iyv~GG~  109 (507)
                      ++++--|+||+
T Consensus       214 f~dk~~VvGGy  224 (1259)
T KOG0163|consen  214 FDDKGQVVGGY  224 (1259)
T ss_pred             EcCCCceechh
Confidence            34444455554

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=88.73  E-value=3.2  Score=36.39  Aligned_cols=55  Identities=25%  Similarity=0.336  Sum_probs=34.3

Q ss_pred             hHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571          432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       432 e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      .+.+.-..|+.++.++.++.+...-+++++.+..    .|..+++.+..+...+.++++
T Consensus        61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~  119 (182)
T PF15035_consen   61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE  119 (182)
T ss_pred             cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556666777777777766666666666655    455566666665555555544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=88.69  E-value=44  Score=37.11  Aligned_cols=61  Identities=20%  Similarity=0.282  Sum_probs=33.4

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~  176 (507)
                      ++.+++.||.+.      .+.+||..++.-...-   ..   .....++.+   ++.+++.|+.+      +.+.+||+.
T Consensus       587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~---~~---~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~  648 (793)
T PLN00181        587 DPTLLASGSDDG------SVKLWSINQGVSIGTI---KT---KANICCVQFPSESGRSLAFGSAD------HKVYYYDLR  648 (793)
T ss_pred             CCCEEEEEcCCC------EEEEEECCCCcEEEEE---ec---CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence            456777776532      3778888765432111   11   111122222   35677777653      368999987


Q ss_pred             CC
Q 010571          177 TM  178 (507)
Q Consensus       177 t~  178 (507)
                      +.
T Consensus       649 ~~  650 (793)
T PLN00181        649 NP  650 (793)
T ss_pred             CC
Confidence            54

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=88.63  E-value=6.8  Score=42.03  Aligned_cols=9  Identities=11%  Similarity=0.412  Sum_probs=4.1

Q ss_pred             cEEEeecCC
Q 010571          179 TWDAVEVTQ  187 (507)
Q Consensus       179 ~W~~~~~~g  187 (507)
                      .|....+.|
T Consensus       176 r~~s~t~qg  184 (980)
T KOG0980|consen  176 RWVSLTPQG  184 (980)
T ss_pred             cccccCCCc
Confidence            455444433

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=88.52  E-value=6.7  Score=38.34  Aligned_cols=28  Identities=11%  Similarity=0.285  Sum_probs=15.4

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHHH
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~  437 (507)
                      .++++++..+|.+++++++++......+
T Consensus       297 le~Enlqmr~qqleeentelRs~~arlk  324 (502)
T KOG0982|consen  297 LEKENLQMRDQQLEEENTELRSLIARLK  324 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666666666554443333

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=88.51  E-value=10  Score=33.55  Aligned_cols=18  Identities=22%  Similarity=0.599  Sum_probs=9.1

Q ss_pred             HHHHHHHHhHHHHHHHHH
Q 010571          469 NEVQILRQQKSAFEQEME  486 (507)
Q Consensus       469 ~e~~~~~~~~~~~~~~~~  486 (507)
                      .|+..+.++.+++..+++
T Consensus       170 ~ei~~lk~~~~ql~~~l~  187 (189)
T PF10211_consen  170 EEIDFLKKQNQQLKAQLE  187 (189)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            345555555555555543

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=88.48  E-value=3.4  Score=28.77  Aligned_cols=11  Identities=36%  Similarity=0.549  Sum_probs=4.2

Q ss_pred             HhHHHHHHHHH
Q 010571          476 QQKSAFEQEME  486 (507)
Q Consensus       476 ~~~~~~~~~~~  486 (507)
                      +++..++++++
T Consensus        46 ~ei~~L~~e~e   56 (61)
T PF08826_consen   46 QEIERLKKEME   56 (61)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=88.39  E-value=4.4  Score=28.23  Aligned_cols=30  Identities=27%  Similarity=0.269  Sum_probs=13.0

Q ss_pred             HhHHHHHhhHhhhhhhhhhHHHHHHHHHHH
Q 010571          431 KELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       431 ~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      .||..++..+...+.++++.+.+..++.++
T Consensus        18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e   47 (61)
T PF08826_consen   18 EELTKVKSANLAFESKLQEAEKRNRELEQE   47 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444333333

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PRK11546 zraP zinc resistance protein; Provisional

Probab=88.35  E-value=3  Score=34.62  Aligned_cols=7  Identities=57%  Similarity=0.738  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 010571          470 EVQILRQ  476 (507)
Q Consensus       470 e~~~~~~  476 (507)
                      |++.|+.
T Consensus        97 EI~~Lr~  103 (143)
T PRK11546         97 EMENLRQ  103 (143)
T ss_pred             HHHHHHH
Confidence            3333333

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=88.35  E-value=35  Score=35.63  Aligned_cols=119  Identities=13%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             EcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEE--EEE-CCEEEEEeccCCCCCcceEEEEEcC
Q 010571          201 HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG--ITI-DENWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       201 ~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~--~~~-~~~l~v~GG~~~~~~~~d~~~~d~~  277 (507)
                      .+++.++.+|-...    -.++.+.+.. .-+... ...+|..+...+.  ..+ ++.++++-     ....+++.++..
T Consensus       391 SPdg~~Ia~st~~~----~~iy~L~~~~-~vk~~~-v~~~~~~~~~a~~i~ftid~~k~~~~s-----~~~~~le~~el~  459 (691)
T KOG2048|consen  391 SPDGNLIAISTVSR----TKIYRLQPDP-NVKVIN-VDDVPLALLDASAISFTIDKNKLFLVS-----KNIFSLEEFELE  459 (691)
T ss_pred             CCCCCEEEEeeccc----eEEEEeccCc-ceeEEE-eccchhhhccceeeEEEecCceEEEEe-----cccceeEEEEec
Confidence            34444666554321    2345554444 222221 2456666544333  334 45555553     223467888888


Q ss_pred             cCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCC
Q 010571          278 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP  338 (507)
Q Consensus       278 ~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~  338 (507)
                      +.+.+++......   +....-...++.+.+++|.+.++     ...+++|++++..-...
T Consensus       460 ~ps~kel~~~~~~---~~~~~I~~l~~SsdG~yiaa~~t-----~g~I~v~nl~~~~~~~l  512 (691)
T KOG2048|consen  460 TPSFKELKSIQSQ---AKCPSISRLVVSSDGNYIAAIST-----RGQIFVYNLETLESHLL  512 (691)
T ss_pred             Ccchhhhhccccc---cCCCcceeEEEcCCCCEEEEEec-----cceEEEEEcccceeecc
Confidence            8888877555322   22233333445566789999886     45799999977654443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=88.16  E-value=13  Score=32.51  Aligned_cols=10  Identities=20%  Similarity=0.521  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 010571          467 IENEVQILRQ  476 (507)
Q Consensus       467 ~e~e~~~~~~  476 (507)
                      |..+++.++.
T Consensus       100 L~~~i~~Lqe  109 (193)
T PF14662_consen  100 LVAEIETLQE  109 (193)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=88.16  E-value=11  Score=34.31  Aligned_cols=47  Identities=13%  Similarity=0.261  Sum_probs=26.2

Q ss_pred             ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHH
Q 010571          385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSK  431 (507)
Q Consensus       385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  431 (507)
                      ..+..++..++.........+.........++.++.......++++.
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~   73 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE   73 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555556666666666655555543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=88.09  E-value=8  Score=37.71  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=11.6

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHH
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSS  435 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~  435 (507)
                      .+..-++.+++..+.++.++++|..+
T Consensus        41 a~~~ai~a~~~~~E~~l~~Lq~e~~~   66 (459)
T KOG0288|consen   41 AESRAIKAKLQEKELELNRLQEENTQ   66 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=88.07  E-value=2.9  Score=44.18  Aligned_cols=19  Identities=26%  Similarity=0.365  Sum_probs=7.5

Q ss_pred             hhhhhHHHHHHhhccchhh
Q 010571          411 ENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~  429 (507)
                      ++......++.+++.+.++
T Consensus        44 Ek~~~~~~V~eLE~sL~eL   62 (617)
T PF15070_consen   44 EKEHDISRVQELERSLSEL   62 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=88.03  E-value=16  Score=31.21  Aligned_cols=10  Identities=20%  Similarity=0.391  Sum_probs=4.1

Q ss_pred             HHHHHHHHhh
Q 010571          480 AFEQEMERAT  489 (507)
Q Consensus       480 ~~~~~~~~~~  489 (507)
                      .+...+++++
T Consensus       144 ~v~~~~e~~~  153 (159)
T PF05384_consen  144 QVSEQIEDAQ  153 (159)
T ss_pred             HHHHHHHHHH
Confidence            3334444443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=87.95  E-value=5.2  Score=38.83  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=16.1

Q ss_pred             hhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHH
Q 010571          446 RCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKS  479 (507)
Q Consensus       446 ~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~  479 (507)
                      .+++++.++..++..+...| +.+.++.|++++..
T Consensus       254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~  288 (552)
T KOG2129|consen  254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV  288 (552)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445555555555555555 22333444444433

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=87.95  E-value=13  Score=32.63  Aligned_cols=50  Identities=10%  Similarity=0.087  Sum_probs=29.8

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      ...+++++..+...+........+..+...++++.+.+.++|-+++..+-
T Consensus        57 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A  106 (181)
T PRK13454         57 GAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET  106 (181)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666555566666666666666666655555544433

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.95  E-value=30  Score=34.31  Aligned_cols=139  Identities=13%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             CCeEeeCCCCC--eEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeeccccccCcc
Q 010571            4 GSWHLELPYDL--WVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKT   79 (507)
Q Consensus         4 ~~~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~~~~~~   79 (507)
                      ..+++|+.+..  |......   -....+......++.||+-.. ++     .+++||..++  .|..--..        
T Consensus        79 ~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~--------  141 (370)
T COG1520          79 NIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGG--------  141 (370)
T ss_pred             cEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCC--------
Confidence            47899999877  9765531   011111111222566554433 22     6899999765  46553321        


Q ss_pred             ccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEE
Q 010571           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIF  157 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~  157 (507)
                              . ++..-.++..++.+|+.-       ....++.+|..++  .|..-...+ . ..+...+.+...+.+| +
T Consensus       142 --------~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy-~  202 (370)
T COG1520         142 --------S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVY-V  202 (370)
T ss_pred             --------C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-c-ccccccCceeecceEE-E
Confidence                    1 233333444455666543       1345888888865  577654221 1 2222222223344444 4


Q ss_pred             cCcCCCCCccCcEEEEEcCCC--cEEE
Q 010571          158 GGEDRSRKLLNDVHFLDLETM--TWDA  182 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~--~W~~  182 (507)
                      |..+    ....++.+|+.++  .|..
T Consensus       203 ~~~~----~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         203 GSDG----YDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             ecCC----CcceEEEEEccCCcEeeee
Confidence            4332    1225899999665  5774

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=87.92  E-value=5.7  Score=42.56  Aligned_cols=7  Identities=0%  Similarity=0.216  Sum_probs=2.8

Q ss_pred             eccCCCC
Q 010571          284 LTSVKGR  290 (507)
Q Consensus       284 ~~~~~~~  290 (507)
                      ||.+|..
T Consensus       254 IP~LP~~  260 (980)
T KOG0980|consen  254 IPTLPED  260 (980)
T ss_pred             CCCCCCC
Confidence            3444433

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=87.89  E-value=13  Score=33.39  Aligned_cols=48  Identities=6%  Similarity=0.058  Sum_probs=27.6

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      ...|.+++..+...+........+....+.+.++.+.+.+++.+++..
T Consensus        79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~  126 (204)
T PRK09174         79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ  126 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666655555555555566666666665555544433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=87.86  E-value=33  Score=34.78  Aligned_cols=148  Identities=10%  Similarity=-0.007  Sum_probs=74.3

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      ..++++|+.++.=..+.   ..+.. .......-++ +|++....++    ..++|.+|+.+.....+...   . ... 
T Consensus       220 ~~I~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~-  286 (427)
T PRK02889        220 PVVYVHDLATGRRRVVA---NFKGS-NSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GID-  286 (427)
T ss_pred             cEEEEEECCCCCEEEee---cCCCC-ccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CCC-
Confidence            45999999988655553   22211 1111112233 5554433322    35799999887776655321   1 111 


Q ss_pred             ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  275 (507)
                      .......++..++|.....  -...+|.+++.++..+.+...+    .........-+++.+++....+.  ...++++|
T Consensus       287 ~~~~wSpDG~~l~f~s~~~--g~~~Iy~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~v~d  358 (427)
T PRK02889        287 TEPFFSPDGRSIYFTSDRG--GAPQIYRMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYISRVGG--AFKLYVQD  358 (427)
T ss_pred             cCeEEcCCCCEEEEEecCC--CCcEEEEEECCCCceEEEecCC----CCcCceEECCCCCEEEEEEccCC--cEEEEEEE
Confidence            1223334444344432211  1257899998887777664221    11111222224544444332221  23689999


Q ss_pred             cCcCeeEEec
Q 010571          276 MTKLAWSILT  285 (507)
Q Consensus       276 ~~~~~W~~~~  285 (507)
                      +.+.....+.
T Consensus       359 ~~~g~~~~lt  368 (427)
T PRK02889        359 LATGQVTALT  368 (427)
T ss_pred             CCCCCeEEcc
Confidence            9888777664

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=87.77  E-value=8.2  Score=35.56  Aligned_cols=92  Identities=18%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhh--hhhhhhhHHHHHHHHHH----HHHhHHH
Q 010571          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA--ERSRCFKLEAQIAELQK----MLESSQT  466 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~e~~~~e~~~----~~~~~~~  466 (507)
                      -|+.+.++.+..+..-..+..+|+.+|..+++.+  .++|=..++.|+..  .++++++|++-+.-.+.    +.+.+|+
T Consensus        72 HLkakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK  149 (305)
T PF15290_consen   72 HLKAKLKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK  149 (305)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Confidence            3455555555566666667777777777777665  34444444444432  23444455544443332    2334445


Q ss_pred             HHHHHHHHHHhHHHHHHHHH
Q 010571          467 IENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~~~~  486 (507)
                      ....+....++++.|.+-.|
T Consensus       150 YFvDINiQN~KLEsLLqsME  169 (305)
T PF15290_consen  150 YFVDINIQNKKLESLLQSME  169 (305)
T ss_pred             HHhhhhhhHhHHHHHHHHHH
Confidence            55567777777777776544

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=87.69  E-value=8.5  Score=35.06  Aligned_cols=50  Identities=22%  Similarity=0.330  Sum_probs=37.0

Q ss_pred             ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHH
Q 010571          385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS  434 (507)
Q Consensus       385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~  434 (507)
                      ..+..++..++......+..+.........++.++...+....++++..+
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~   75 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE   75 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777777777777777888888888888888887765543

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=87.58  E-value=24  Score=32.81  Aligned_cols=165  Identities=16%  Similarity=0.077  Sum_probs=90.5

Q ss_pred             CCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCcee---EeeeccccccCccccCCccCCCCCcccee---eE
Q 010571           24 RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWS---NLRLETELDADKTEDSGLLEVLPPMSDHC---MV   97 (507)
Q Consensus        24 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~---~~~~~~~~~~~~~~~~~~~~~p~~r~~~~---~~   97 (507)
                      +|.+-.|.+.++.++.||.--.     .++.+..||+.+.+-.   .+|.....          ...|....+++   .+
T Consensus        65 Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~v~~~~~L~~A~~~----------n~~~y~~~~~t~iD~A  129 (250)
T PF02191_consen   65 LPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRSVVARRELPGAGYN----------NRFPYYWSGYTDIDFA  129 (250)
T ss_pred             EeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCcEEEEEECCccccc----------cccceecCCCceEEEE
Confidence            4444556666777777776533     4678999999998755   33332210          01111222222   33


Q ss_pred             EECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571           98 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus        98 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      +-++-|+++-....... .-.+-..|+.+..=..--.+ ..+.+..+ .+..+.|.||+....+...  ..-.++||+.+
T Consensus       130 vDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw~T-~~~k~~~~-naFmvCGvLY~~~s~~~~~--~~I~yafDt~t  204 (250)
T PF02191_consen  130 VDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTWNT-SYPKRSAG-NAFMVCGVLYATDSYDTRD--TEIFYAFDTYT  204 (250)
T ss_pred             EcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEEEe-ccCchhhc-ceeeEeeEEEEEEECCCCC--cEEEEEEECCC
Confidence            33455655544333221 23466778776543322211 23333333 3555677888887665432  34578899998


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEc--CcEEEEEe
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHA--NRYLIVFG  210 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~--~~~l~i~G  210 (507)
                      ++=..+..  +.+.+-..++++.++  ++.||++-
T Consensus       205 ~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~wd  237 (250)
T PF02191_consen  205 GKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAWD  237 (250)
T ss_pred             Cceeceee--eeccccCceEeeeECCCCCeEEEEE
Confidence            87766654  445455555666653  46788874

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=87.55  E-value=16  Score=31.98  Aligned_cols=18  Identities=33%  Similarity=0.501  Sum_probs=8.7

Q ss_pred             HHHHHHHhHHHHHHHHHH
Q 010571          470 EVQILRQQKSAFEQEMER  487 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~~~  487 (507)
                      +.+++++.+..++...+.
T Consensus       153 ~~~~l~~~i~~l~rk~~~  170 (177)
T PF13870_consen  153 EVEELRKEIKELERKVEI  170 (177)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444455555555554443

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=87.54  E-value=10  Score=34.10  Aligned_cols=51  Identities=8%  Similarity=0.177  Sum_probs=31.3

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV  441 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~  441 (507)
                      ...+.+++..+...+.......++.++.+.+.++.+++.+.+.+++..+-+
T Consensus        74 ~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~  124 (205)
T PRK06231         74 QRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQAN  124 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666666666666666666666555544443

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=87.42  E-value=6.1  Score=38.79  Aligned_cols=12  Identities=17%  Similarity=0.268  Sum_probs=5.4

Q ss_pred             hHHHHhhccccc
Q 010571          354 TAAYALAKSEKL  365 (507)
Q Consensus       354 ~~~~~~~~~~~~  365 (507)
                      +..+.++.+...
T Consensus       120 ~~~f~i~~~qt~  131 (447)
T KOG2751|consen  120 TRLFDILSSQTQ  131 (447)
T ss_pred             HHHHHHhhccCC
Confidence            344544444443

>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function

Probab=87.31  E-value=18  Score=31.80  Aligned_cols=94  Identities=15%  Similarity=0.204  Sum_probs=42.5

Q ss_pred             hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHH----HHHHHHHhHHHHH
Q 010571          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA----ELQKMLESSQTIE  468 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~----e~~~~~~~~~~~e  468 (507)
                      +|+.+.++-+....++......-+..++.......+.+.+++.++.-++..+..+...+....    ++.++-+-+....
T Consensus        71 qLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk  150 (188)
T PF05335_consen   71 QLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAK  150 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444333333334444444444444444444444444444444444443333    3333333333445


Q ss_pred             HHHHHHHHhHHHHHHHHH
Q 010571          469 NEVQILRQQKSAFEQEME  486 (507)
Q Consensus       469 ~e~~~~~~~~~~~~~~~~  486 (507)
                      +..+.|++++.....+++
T Consensus       151 ~Rve~L~~QL~~Ar~D~~  168 (188)
T PF05335_consen  151 RRVEELQRQLQAARADYE  168 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            566666666665555554

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.27  E-value=5.3  Score=39.32  Aligned_cols=19  Identities=26%  Similarity=0.336  Sum_probs=7.6

Q ss_pred             hhhhhHHHHHHhhccchhh
Q 010571          411 ENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~  429 (507)
                      ..++|..++........++
T Consensus       294 yLaKL~~~l~~~~~~~~~l  312 (521)
T KOG1937|consen  294 YLAKLMGKLAELNKQMEEL  312 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444433333333

>PF15233 SYCE1: Synaptonemal complex central element protein 1

Probab=87.17  E-value=14  Score=29.76  Aligned_cols=50  Identities=18%  Similarity=0.270  Sum_probs=28.1

Q ss_pred             hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571          389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      ..+..++.-+....+.+.+.+.--.-|+++++.+..+.-.+++-+...++
T Consensus        13 nrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe   62 (134)
T PF15233_consen   13 NRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQE   62 (134)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            44555555555555566666666666777777776655544433333333

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=87.10  E-value=5  Score=37.93  Aligned_cols=6  Identities=33%  Similarity=-0.075  Sum_probs=2.2

Q ss_pred             hhhHHH
Q 010571          447 CFKLEA  452 (507)
Q Consensus       447 ~~~~e~  452 (507)
                      ..+.++
T Consensus       222 ~~k~ee  227 (561)
T KOG1103|consen  222 TKKGEE  227 (561)
T ss_pred             cCCChH
Confidence            333333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.06  E-value=7.9  Score=41.17  Aligned_cols=41  Identities=12%  Similarity=0.139  Sum_probs=20.8

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhH
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  450 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  450 (507)
                      .+.+.+++...+++.++++++.+++....+.+++++....+
T Consensus       671 ~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~L  711 (970)
T KOG0946|consen  671 YQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLL  711 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555544444444433333

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=87.06  E-value=3  Score=36.88  Aligned_cols=12  Identities=42%  Similarity=0.634  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHH
Q 010571          451 EAQIAELQKMLE  462 (507)
Q Consensus       451 e~~~~e~~~~~~  462 (507)
                      +.++.+++++++
T Consensus       116 ~~~~~~l~~el~  127 (188)
T PF03962_consen  116 KKELKELKKELE  127 (188)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=86.99  E-value=14  Score=29.67  Aligned_cols=14  Identities=14%  Similarity=0.392  Sum_probs=5.3

Q ss_pred             HHHHHhHHHHHHHH
Q 010571          472 QILRQQKSAFEQEM  485 (507)
Q Consensus       472 ~~~~~~~~~~~~~~  485 (507)
                      +.++++++.+..++
T Consensus        94 ~~l~e~l~eLq~~i  107 (119)
T COG1382          94 EKLQERLEELQSEI  107 (119)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=86.94  E-value=3.8  Score=40.20  Aligned_cols=27  Identities=19%  Similarity=0.299  Sum_probs=12.1

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHH
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSV  436 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~  436 (507)
                      .+...|+.+|...+.++++..++.++.
T Consensus        15 ~~V~~m~~~L~~~~~~L~~k~~e~e~l   41 (344)
T PF12777_consen   15 EQVEEMQEELEEKQPELEEKQKEAEEL   41 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=86.92  E-value=9.7  Score=31.80  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 010571          466 TIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~~~  488 (507)
                      ++++++..++++++++.+.++++
T Consensus       112 ~l~~~l~~~~~~~~~~~~~l~~l  134 (140)
T PRK03947        112 KLEEALQKLASRIAQLAQELQQL  134 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555443

>PF14282 FlxA: FlxA-like protein

Probab=86.84  E-value=2.6  Score=33.29  Aligned_cols=18  Identities=33%  Similarity=0.311  Sum_probs=8.0

Q ss_pred             hhhHHHHHHHHHHHHHhH
Q 010571          447 CFKLEAQIAELQKMLESS  464 (507)
Q Consensus       447 ~~~~e~~~~e~~~~~~~~  464 (507)
                      ...++.+|+.++.++.++
T Consensus        53 ~q~Lq~QI~~LqaQI~ql   70 (106)
T PF14282_consen   53 IQLLQAQIQQLQAQIAQL   70 (106)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444433

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=86.83  E-value=5.2  Score=38.86  Aligned_cols=11  Identities=27%  Similarity=0.453  Sum_probs=5.0

Q ss_pred             hhHHhhHHHHH
Q 010571          389 TDIDAIKEDKR  399 (507)
Q Consensus       389 ~~~~~l~~~~~  399 (507)
                      ++++++++++.
T Consensus       107 kkiqal~keke  117 (552)
T KOG2129|consen  107 KKIQALFKEKE  117 (552)
T ss_pred             HHHHHhhcccc
Confidence            44444444444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=86.83  E-value=5.4  Score=38.86  Aligned_cols=51  Identities=12%  Similarity=0.085  Sum_probs=30.5

Q ss_pred             HHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhh
Q 010571          397 DKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC  447 (507)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  447 (507)
                      +....+...+....+...++.+-......+++.|-+|+++++++.++.+++
T Consensus        21 ~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~   71 (459)
T KOG0288|consen   21 ELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER   71 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444555566666666666667777777777777776665444

>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]

Probab=86.77  E-value=8.7  Score=33.54  Aligned_cols=52  Identities=17%  Similarity=0.170  Sum_probs=34.2

Q ss_pred             hHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHH
Q 010571          432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       432 e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~-~~e~e~~~~~~~~~~~~~  483 (507)
                      +.+++++.++.++.++++-.+.+|++++.|+..+ -|....-|.+|++.+.++
T Consensus        68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~  120 (272)
T KOG4552|consen   68 EQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKE  120 (272)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677777888888888888888888877 344445555555544433

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.75  E-value=28  Score=32.78  Aligned_cols=132  Identities=17%  Similarity=0.147  Sum_probs=69.7

Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccce---EEE---ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHS---VTL---VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  188 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~---~~~---~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~  188 (507)
                      ..+.+..||..+++=+.+-.. ....++.-+.   =..   +++.|++.-+-.   ...-.+|.+|..++.-..+..   
T Consensus        76 KYSHVH~yd~e~~~VrLLWke-sih~~~~WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~~---  148 (339)
T PF09910_consen   76 KYSHVHEYDTENDSVRLLWKE-SIHDKTKWAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLSS---  148 (339)
T ss_pred             ccceEEEEEcCCCeEEEEEec-ccCCccccccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeeccC---
Confidence            467899999988864444321 1111211111   111   256777765432   234469999999998888863   


Q ss_pred             CCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcE--Eeeeec----CCCCCCCcceEEEEECCEEEEE
Q 010571          189 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW--SQPEIK----GDLVTGRAGHAGITIDENWYIV  259 (507)
Q Consensus       189 ~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W--~~~~~~----~~~p~~r~~~~~~~~~~~l~v~  259 (507)
                      .|.++    .+.+.+.  .+||=.....-.+.|++||+.++.|  ...+..    +.....|..-.++.+.+++|.|
T Consensus       149 ~ps~K----G~~~~D~--a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF  219 (339)
T PF09910_consen  149 NPSLK----GTLVHDY--ACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF  219 (339)
T ss_pred             CCCcC----ceEeeee--EEEeccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence            23332    1222233  2232222223457899999999999  332211    1111123333556666776655

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.70  E-value=6  Score=41.66  Aligned_cols=35  Identities=14%  Similarity=0.284  Sum_probs=12.7

Q ss_pred             hhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccch
Q 010571          393 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS  427 (507)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  427 (507)
                      .|+.....+.........+.+.++..+..+..+.+
T Consensus       332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~  366 (594)
T PF05667_consen  332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE  366 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=86.64  E-value=18  Score=30.93  Aligned_cols=39  Identities=31%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  429 (507)
                      +..+...+..+-......+.+...++++|++++.+..+.
T Consensus         8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~   46 (159)
T PF05384_consen    8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEV   46 (159)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555555555444443

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.63  E-value=3.7  Score=42.09  Aligned_cols=18  Identities=17%  Similarity=0.318  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHhHHHHHHH
Q 010571          467 IENEVQILRQQKSAFEQE  484 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~~  484 (507)
                      .++++.+++++-+++..|
T Consensus       347 kd~~i~~mReec~~l~~E  364 (546)
T KOG0977|consen  347 KDAEIAKMREECQQLSVE  364 (546)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444433333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=86.54  E-value=40  Score=34.26  Aligned_cols=162  Identities=11%  Similarity=-0.022  Sum_probs=78.0

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCE-EEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK-LLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++.-..+....                 .........-+++ |++......    ..++|.+|+.++....
T Consensus       228 ~~i~i~dl~tg~~~~l~~~~-----------------g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~  286 (429)
T PRK01742        228 SQLVVHDLRSGARKVVASFR-----------------GHNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQ  286 (429)
T ss_pred             cEEEEEeCCCCceEEEecCC-----------------CccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEe
Confidence            46899999887655554322                 1111122222444 444332211    2358999998887766


Q ss_pred             eecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          132 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      +..   .+. ........-++ .|++....++    ...++.++..+..-..+..  .   .   +......++..+++.
T Consensus       287 lt~---~~~-~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~---~---~~~~~SpDG~~ia~~  350 (429)
T PRK01742        287 LTS---GAG-NNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R---G---YSAQISADGKTLVMI  350 (429)
T ss_pred             ecc---CCC-CcCCEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C---C---CCccCCCCCCEEEEE
Confidence            642   111 11111122244 4554433221    2367777776554333311  1   1   122223343333343


Q ss_pred             CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEecc
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG  262 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~  262 (507)
                      +.      +.++.+|+.++.+..+...  .   ........-+++++++++.
T Consensus       351 ~~------~~i~~~Dl~~g~~~~lt~~--~---~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        351 NG------DNVVKQDLTSGSTEVLSST--F---LDESPSISPNGIMIIYSST  391 (429)
T ss_pred             cC------CCEEEEECCCCCeEEecCC--C---CCCCceECCCCCEEEEEEc
Confidence            32      4688899999888765321  1   1111223346677777664

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=86.53  E-value=4.9  Score=41.09  Aligned_cols=36  Identities=11%  Similarity=0.212  Sum_probs=16.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571          444 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       444 ~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~  479 (507)
                      +.++..++..+.+.++++......+.+...|+++.+
T Consensus       317 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~  352 (444)
T TIGR03017       317 KQREAELREALENQKAKVLELNRQRDEMSVLQRDVE  352 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555544444444444444444444

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=86.33  E-value=20  Score=30.60  Aligned_cols=48  Identities=17%  Similarity=0.141  Sum_probs=26.5

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      ...+.+++..+...+........+......+.++.+.+.+.+.+++.+
T Consensus        48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~   95 (156)
T CHL00118         48 LKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEIT   95 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666555555555555555555555555555444433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=86.20  E-value=41  Score=34.13  Aligned_cols=140  Identities=14%  Similarity=0.090  Sum_probs=69.0

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      ..++.+|..++.-..+.   ..+.. .......-++ .|++....++    ..+++.+|+.+.....+...   .  ...
T Consensus       228 ~~i~i~dl~tg~~~~l~---~~~g~-~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~--~~~  294 (429)
T PRK01742        228 SQLVVHDLRSGARKVVA---SFRGH-NGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTSG---A--GNN  294 (429)
T ss_pred             cEEEEEeCCCCceEEEe---cCCCc-cCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeeccC---C--CCc
Confidence            45899999888766554   22211 1111122244 4544332222    12588899988877666421   1  112


Q ss_pred             ceEEEEcCcEEEEEeC-CCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571          196 HSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       196 ~~~~~~~~~~l~i~GG-~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  274 (507)
                      .......++..++|.. ..+   ...+|.++.....-..+.  .    .. ......-+++.+++.+.      +.++.+
T Consensus       295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~--~----~~-~~~~~SpDG~~ia~~~~------~~i~~~  358 (429)
T PRK01742        295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVG--G----RG-YSAQISADGKTLVMING------DNVVKQ  358 (429)
T ss_pred             CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEec--C----CC-CCccCCCCCCEEEEEcC------CCEEEE
Confidence            2233334444334433 222   246888887665433331  1    11 11112224444444332      257789


Q ss_pred             EcCcCeeEEec
Q 010571          275 NMTKLAWSILT  285 (507)
Q Consensus       275 d~~~~~W~~~~  285 (507)
                      |+.+..+..+.
T Consensus       359 Dl~~g~~~~lt  369 (429)
T PRK01742        359 DLTSGSTEVLS  369 (429)
T ss_pred             ECCCCCeEEec
Confidence            99988887653

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.19  E-value=28  Score=32.14  Aligned_cols=101  Identities=20%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             CEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571           38 QKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  115 (507)
                      .+-|++-|.+.    ..+-..|+.++.  |+.+-.                   .|.-.++.++||. .|+|-+..    
T Consensus        22 skT~v~igSHs----~~~~avd~~sG~~~We~ilg-------------------~RiE~sa~vvgdf-VV~GCy~g----   73 (354)
T KOG4649|consen   22 SKTLVVIGSHS----GIVIAVDPQSGNLIWEAILG-------------------VRIECSAIVVGDF-VVLGCYSG----   73 (354)
T ss_pred             CceEEEEecCC----ceEEEecCCCCcEEeehhhC-------------------ceeeeeeEEECCE-EEEEEccC----
Confidence            35566656443    346678998875  766542                   6888888889998 44443322    


Q ss_pred             cceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571          116 SMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       116 ~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~  179 (507)
                        .+|.++..|+  -|.-..     -.....-+.+..++.++++|-.+.      ..|.+|+.+..
T Consensus        74 --~lYfl~~~tGs~~w~f~~-----~~~vk~~a~~d~~~glIycgshd~------~~yalD~~~~~  126 (354)
T KOG4649|consen   74 --GLYFLCVKTGSQIWNFVI-----LETVKVRAQCDFDGGLIYCGSHDG------NFYALDPKTYG  126 (354)
T ss_pred             --cEEEEEecchhheeeeee-----hhhhccceEEcCCCceEEEecCCC------cEEEecccccc
Confidence              2778888877  455442     112222233445566777776543      48888887765

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=86.09  E-value=18  Score=29.87  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=10.8

Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhH
Q 010571          441 VAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       441 ~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ..+++...+++..+.+++.+....
T Consensus        62 ~~lr~e~~~~~~~~~~l~~~~~~a   85 (132)
T PF07926_consen   62 QQLREELQELQQEINELKAEAESA   85 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444443333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=85.96  E-value=3.4  Score=36.87  Aligned_cols=48  Identities=21%  Similarity=0.248  Sum_probs=25.3

Q ss_pred             hHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571          439 QLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      ++...+++..+++.++++.+.++...+    .++|+.+.++++-..+.++.+
T Consensus       152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~  203 (216)
T KOG1962|consen  152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYS  203 (216)
T ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            344445555555555555555555554    455555555555555555443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.85  E-value=8.3  Score=41.93  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 010571          466 TIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~~~  488 (507)
                      ++..+..++..++..++++..++
T Consensus       353 ~l~~ee~~~~~rl~~l~~~~~~l  375 (1200)
T KOG0964|consen  353 SLVDEEKRLKKRLAKLEQKQRDL  375 (1200)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHH
Confidence            55555566666666666665544

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=85.72  E-value=5.6  Score=37.04  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      ..+++++++.+++..||.|+-.
T Consensus        63 dYqrq~~elneEkrtLeRELAR   84 (351)
T PF07058_consen   63 DYQRQVQELNEEKRTLERELAR   84 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5666778888888888888743

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=85.71  E-value=15  Score=32.00  Aligned_cols=50  Identities=8%  Similarity=0.147  Sum_probs=30.5

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      ...+.+++..+...+........+..+.+++.+.++++.+++.+++..+-
T Consensus        44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A   93 (175)
T PRK14472         44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREG   93 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666655666666666666666666666655554443

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=85.70  E-value=4.3  Score=35.22  Aligned_cols=54  Identities=28%  Similarity=0.366  Sum_probs=21.2

Q ss_pred             hhhhHHHHHHhhccchhhHHhHHHHHhhH--hhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          412 NSRFREKIDEVNSTHSELSKELSSVQGQL--VAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       412 ~~~l~~~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ..+|+.++..++.+...++.++..+....  +.+...+.+++.++.+++.+|..++
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444433333333333322  2223333444444444444444433

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=85.50  E-value=16  Score=31.86  Aligned_cols=50  Identities=10%  Similarity=0.177  Sum_probs=31.4

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      ...+.+++..+...+........+....+.+.+..+++.+++.+++..+-
T Consensus        45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a   94 (174)
T PRK07352         45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADA   94 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666676666666666655554444

>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus

Probab=85.48  E-value=7.5  Score=33.01  Aligned_cols=19  Identities=16%  Similarity=0.333  Sum_probs=8.1

Q ss_pred             hhhhhHHHHHHhhccchhh
Q 010571          411 ENSRFREKIDEVNSTHSEL  429 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~  429 (507)
                      +.+.++.-++...+.++++
T Consensus       106 Elq~mr~~ln~FR~qm~dl  124 (179)
T PF14723_consen  106 ELQQMRRSLNSFREQMMDL  124 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=85.44  E-value=11  Score=38.71  Aligned_cols=10  Identities=30%  Similarity=0.338  Sum_probs=4.3

Q ss_pred             HHHHHHHhHH
Q 010571          470 EVQILRQQKS  479 (507)
Q Consensus       470 e~~~~~~~~~  479 (507)
                      +.+.|++++.
T Consensus       205 ~~q~Lleel~  214 (546)
T KOG0977|consen  205 RVQTLLEELA  214 (546)
T ss_pred             HHHHHHHHHH
Confidence            3444444443

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=85.41  E-value=22  Score=30.94  Aligned_cols=50  Identities=10%  Similarity=0.171  Sum_probs=28.2

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      ...+.+++..+...+........+....+.+.+..+.+.+++.+++..+-
T Consensus        44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a   93 (173)
T PRK13453         44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDA   93 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666665655555555555556666666666655555544443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.39  E-value=9.1  Score=41.64  Aligned_cols=78  Identities=19%  Similarity=0.355  Sum_probs=44.1

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHH----HHHHHHHHhHHHHHHHH
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE----NEVQILRQQKSAFEQEM  485 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e----~e~~~~~~~~~~~~~~~  485 (507)
                      .+.+.++.++..++.++++...+++++...+...+.+..+......++++++..++...    +|-.+++..+..+++.+
T Consensus       411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl  490 (1200)
T KOG0964|consen  411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDL  490 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666666666666666666665555556666666666666666655555322    23344444445555555


Q ss_pred             HH
Q 010571          486 ER  487 (507)
Q Consensus       486 ~~  487 (507)
                      ..
T Consensus       491 ~~  492 (1200)
T KOG0964|consen  491 SR  492 (1200)
T ss_pred             HH
Confidence            43

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=85.31  E-value=8.2  Score=28.20  Aligned_cols=23  Identities=22%  Similarity=0.497  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhh
Q 010571          467 IENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      +++.+..+..+++.++.+++.++
T Consensus        45 ~e~~~~~l~~~~~~~e~~~~~l~   67 (74)
T PF12329_consen   45 LEKQIKELKKKLEELEKELESLE   67 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555544433

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=85.23  E-value=16  Score=32.16  Aligned_cols=47  Identities=11%  Similarity=0.184  Sum_probs=25.0

Q ss_pred             HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571          392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      ..+.+++..+...+........+....+.+.+..+.+.+++.+++..
T Consensus        51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~   97 (184)
T CHL00019         51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRV   97 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555545555555555555555555555444433

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.22  E-value=20  Score=32.75  Aligned_cols=14  Identities=29%  Similarity=0.425  Sum_probs=5.9

Q ss_pred             HHHhhccchhhHHh
Q 010571          419 IDEVNSTHSELSKE  432 (507)
Q Consensus       419 ~~~~~~~~~~~~~e  432 (507)
                      |++++++.+.+..|
T Consensus        34 L~e~~kE~~~L~~E   47 (230)
T PF10146_consen   34 LEEYRKEMEELLQE   47 (230)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=85.18  E-value=5.5  Score=43.54  Aligned_cols=34  Identities=24%  Similarity=0.228  Sum_probs=18.3

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 010571          447 CFKLEAQIAELQKMLESSQTIENEVQILRQQKSA  480 (507)
Q Consensus       447 ~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~  480 (507)
                      ...+++++.++++++.+..+.+++..+++++.+.
T Consensus       348 ~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~  381 (726)
T PRK09841        348 RQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEA  381 (726)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3344444455555555555666666666666553

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=85.12  E-value=8.6  Score=33.99  Aligned_cols=51  Identities=25%  Similarity=0.360  Sum_probs=25.4

Q ss_pred             HHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571          436 VQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       436 ~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      ...++.+....+.+++..+.+++++.+...    ...+++.+++-..++++++++
T Consensus       122 ~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~  176 (190)
T PF05266_consen  122 KEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE  176 (190)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555666666666665543333    333455555555555555544

>PF14282 FlxA: FlxA-like protein

Probab=85.10  E-value=1.8  Score=34.25  Aligned_cols=6  Identities=17%  Similarity=0.457  Sum_probs=2.2

Q ss_pred             HHHHHH
Q 010571          470 EVQILR  475 (507)
Q Consensus       470 e~~~~~  475 (507)
                      .+.+++
T Consensus        66 QI~qlq   71 (106)
T PF14282_consen   66 QIAQLQ   71 (106)
T ss_pred             HHHHHH
Confidence            333333

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.94  E-value=15  Score=33.39  Aligned_cols=24  Identities=21%  Similarity=0.577  Sum_probs=13.6

Q ss_pred             EEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          205 YLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       205 ~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      +-++.||.+..   -.||.|  ..+.|..
T Consensus       176 krlvSgGcDn~---VkiW~~--~~~~w~~  199 (299)
T KOG1332|consen  176 KRLVSGGCDNL---VKIWKF--DSDSWKL  199 (299)
T ss_pred             ceeeccCCccc---eeeeec--CCcchhh
Confidence            35778887632   235555  4556654

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=84.88  E-value=18  Score=31.52  Aligned_cols=50  Identities=6%  Similarity=0.121  Sum_probs=27.0

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      ...+.+++..+...+........+..+.+.+.+..+.+.+++.+++..+-
T Consensus        42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A   91 (173)
T PRK13460         42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEA   91 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555544433

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=84.85  E-value=3.5  Score=42.25  Aligned_cols=52  Identities=19%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA  442 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~  442 (507)
                      +.-|+..|+.+.-..+-..++.+...++|..++.-+++.+..|...++.+|+
T Consensus       113 LaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQq  164 (861)
T KOG1899|consen  113 LARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQ  164 (861)
T ss_pred             HHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHH
Confidence            3334444444422222222233333344444444444444444444444433

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=84.57  E-value=9.9  Score=29.46  Aligned_cols=17  Identities=24%  Similarity=0.389  Sum_probs=7.1

Q ss_pred             HHHHHHHhHHHHHHHHH
Q 010571          470 EVQILRQQKSAFEQEME  486 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~~  486 (507)
                      ..+||.++.+.+.++++
T Consensus        55 rN~QL~kRV~~LQ~El~   71 (102)
T PF10205_consen   55 RNQQLTKRVEVLQEELE   71 (102)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444443

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.52  E-value=26  Score=32.06  Aligned_cols=41  Identities=10%  Similarity=0.137  Sum_probs=22.7

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhH
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  450 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  450 (507)
                      .-..+++++++.+..+.....++|+++......++..+.+.
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa   72 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQA   72 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555566666555556666666666555554444333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=84.43  E-value=12  Score=32.61  Aligned_cols=73  Identities=12%  Similarity=0.205  Sum_probs=39.6

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      ++..+.+.|..-+.....+..++...+.+-++.-.+-...+.+.+.++.+-   +..+..+.++++++..|+.+.+
T Consensus       113 Qka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~---~aaqaQL~~lQ~qv~~Lq~q~~  185 (192)
T PF11180_consen  113 QKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAER---RAAQAQLRQLQRQVRQLQRQAN  185 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence            555566667666666666666666665555444333333333333222222   2455566667777777776654

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=84.34  E-value=13  Score=40.69  Aligned_cols=6  Identities=33%  Similarity=0.456  Sum_probs=3.2

Q ss_pred             EEcccC
Q 010571          313 AFGGYN  318 (507)
Q Consensus       313 v~GG~~  318 (507)
                      +.||..
T Consensus       661 lTGGs~  666 (1174)
T KOG0933|consen  661 LTGGSR  666 (1174)
T ss_pred             ccCCCC
Confidence            456654

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=84.33  E-value=8.5  Score=36.68  Aligned_cols=16  Identities=13%  Similarity=0.196  Sum_probs=7.3

Q ss_pred             HHhhHHHHHHHHHhhH
Q 010571          391 IDAIKEDKRVLELSLT  406 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~  406 (507)
                      +..++....++++++.
T Consensus        79 ~r~lk~~l~evEekyr   94 (302)
T PF09738_consen   79 LRDLKDSLAEVEEKYR   94 (302)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=84.20  E-value=13  Score=27.00  Aligned_cols=29  Identities=21%  Similarity=0.193  Sum_probs=12.2

Q ss_pred             hhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571          414 RFREKIDEVNSTHSELSKELSSVQGQLVA  442 (507)
Q Consensus       414 ~l~~~~~~~~~~~~~~~~e~~~~~~~~~~  442 (507)
                      +|..+++.+-..+..++.++.+.++++..
T Consensus         8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~   36 (72)
T PF06005_consen    8 QLEEKIQQAVETIALLQMENEELKEKNNE   36 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444444444444444444443333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=84.19  E-value=45  Score=32.79  Aligned_cols=120  Identities=14%  Similarity=0.048  Sum_probs=64.6

Q ss_pred             CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCC---CC
Q 010571           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK---SS  114 (507)
Q Consensus        38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~  114 (507)
                      ..+||.-...... .+.+.++|..+++-...-..+.               .||  +.+..-+..||+.-.+.+.   ..
T Consensus        13 ~~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~G~---------------~P~--~~~spDg~~lyva~~~~~R~~~G~   74 (352)
T TIGR02658        13 RRVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDGGF---------------LPN--PVVASDGSFFAHASTVYSRIARGK   74 (352)
T ss_pred             CEEEEECCccccc-CceEEEEECCCCEEEEEEEccC---------------CCc--eeECCCCCEEEEEeccccccccCC
Confidence            4466665532222 2789999999866544333321               133  2223335678888763221   22


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCccc------ceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCcEEE
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGG------HSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDA  182 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~------~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~  182 (507)
                      ..+.+.+||+.|.+-..--+.  .+.||..      .....-+ ..+|+.. .    ...+.+.++|+.+++-..
T Consensus        75 ~~d~V~v~D~~t~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~----~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F----SPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCCEEEEEECccCcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEec-C----CCCCEEEEEECCCCcEEE
Confidence            356799999999876543321  1232311      1112223 3666652 1    124578888888877654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=84.06  E-value=14  Score=39.28  Aligned_cols=47  Identities=15%  Similarity=0.290  Sum_probs=25.5

Q ss_pred             HHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571          396 EDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA  442 (507)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~  442 (507)
                      ...++++..++....++..|+..++.++.++.+.+-+++....++++
T Consensus       106 sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~  152 (1265)
T KOG0976|consen  106 SQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHK  152 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            33344444555555566666666666666666555555554444433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=83.97  E-value=14  Score=40.05  Aligned_cols=14  Identities=7%  Similarity=-0.071  Sum_probs=7.5

Q ss_pred             CCCCeEeeCCCCCe
Q 010571            2 DSGSWHLELPYDLW   15 (507)
Q Consensus         2 ~~~~~~~d~~~~~W   15 (507)
                      |++.|++|.....-
T Consensus        41 d~~L~vWd~~e~~l   54 (717)
T PF10168_consen   41 DGDLFVWDSSECCL   54 (717)
T ss_pred             CCEEEEEECCCCEE
Confidence            44556666664443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=83.80  E-value=23  Score=33.17  Aligned_cols=22  Identities=14%  Similarity=0.409  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      .++..+.|++-+--=|.+++++
T Consensus       218 s~eERL~QlqsEN~LLrQQLdd  239 (305)
T PF14915_consen  218 SLEERLSQLQSENMLLRQQLDD  239 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444344444443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=83.80  E-value=60  Score=34.00  Aligned_cols=124  Identities=14%  Similarity=0.028  Sum_probs=65.2

Q ss_pred             eeeEEECCEEEEEcccCCCCCCcceEEEEECCCC--cEEEeecCC-CC-C---CCcccceEEEECCEEEEEcCcCCCCCc
Q 010571           94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSG-KV-P---VARGGHSVTLVGSRLIIFGGEDRSRKL  166 (507)
Q Consensus        94 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g-~~-p---~~r~~~~~~~~~~~l~~~GG~~~~~~~  166 (507)
                      .+-++.++.||+....       ..++.+|..|+  .|+.-.... .. +   ........++.++++|+...       
T Consensus        63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------  128 (527)
T TIGR03075        63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------  128 (527)
T ss_pred             cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------
Confidence            3445668999986542       24889998876  477543110 00 0   00111223455777776321       


Q ss_pred             cCcEEEEEcCCCc--EEEeecCCCCCCCC-CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEee
Q 010571          167 LNDVHFLDLETMT--WDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  234 (507)
Q Consensus       167 ~~~~~~~d~~t~~--W~~~~~~g~~p~~r-~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~  234 (507)
                      ...++++|..|++  |+.-..  ...... ...+.++. ++.+|+............++.||..++.  |+.-
T Consensus       129 dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       129 DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            2369999998875  765431  111111 11122333 5645553222222234578999998875  7763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=83.79  E-value=22  Score=30.25  Aligned_cols=50  Identities=12%  Similarity=0.177  Sum_probs=32.1

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      ...+.+++..+...+........+.+..+.+.+..+.+.+.+..++.++.
T Consensus        30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a   79 (156)
T PRK05759         30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQA   79 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666667777777766666655555444

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=83.78  E-value=6.2  Score=36.34  Aligned_cols=56  Identities=23%  Similarity=0.264  Sum_probs=36.5

Q ss_pred             hhhhHHHHHHHHHHH--------HHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceee
Q 010571          446 RCFKLEAQIAELQKM--------LESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWR  501 (507)
Q Consensus       446 ~~~~~e~~~~e~~~~--------~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (507)
                      |..+.|..|++.-++        .|.+--+|..++++++++++||.++++.+..+.+.++|+=+
T Consensus        24 rD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~~~~~~~~~ggFL~   87 (247)
T PF09849_consen   24 RDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQAQAPQAQSSGGFLS   87 (247)
T ss_pred             CCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcchh
Confidence            444455555444333        33333567778899999999999987766666677777644

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=83.73  E-value=24  Score=29.36  Aligned_cols=49  Identities=8%  Similarity=0.087  Sum_probs=27.7

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  439 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~  439 (507)
                      ...+.+++..+...+........+..+.+.+.+..+.+.+.+..++.++
T Consensus        31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~   79 (140)
T PRK07353         31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAE   79 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666665555555555555666666666655554444443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=83.68  E-value=78  Score=35.17  Aligned_cols=102  Identities=13%  Similarity=0.115  Sum_probs=51.1

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      +.+++.|+.+      ..+.+||..++.-....   .. ....-.+++..  ++.+++.||.+.      .+.+||+.+.
T Consensus       545 ~~~las~~~D------g~v~lWd~~~~~~~~~~---~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~  608 (793)
T PLN00181        545 KSQVASSNFE------GVVQVWDVARSQLVTEM---KE-HEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG  608 (793)
T ss_pred             CCEEEEEeCC------CeEEEEECCCCeEEEEe---cC-CCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence            4455555542      24888888776432221   11 11111223232  456777777542      4888888765


Q ss_pred             cEEEeecCCCCCCCCCCceEEEE--cCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~--~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      .-...-.  .    ......+.+  .++.++++|+.+     +.|.+||+.+.
T Consensus       609 ~~~~~~~--~----~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~  650 (793)
T PLN00181        609 VSIGTIK--T----KANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNP  650 (793)
T ss_pred             cEEEEEe--c----CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence            4322110  0    111122222  345577777754     46889998654

>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins

Probab=83.64  E-value=4.1  Score=39.18  Aligned_cols=41  Identities=22%  Similarity=0.421  Sum_probs=23.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceee
Q 010571          455 AELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWR  501 (507)
Q Consensus       455 ~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (507)
                      ..++++++.+.++..+++++.++...|..-+      .-.+.+|.||
T Consensus        34 ~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL------~~~k~rG~wG   74 (304)
T PF02646_consen   34 GSLKEQLKQLSEANGEIQQLSQEASNLTSAL------KNSKTRGNWG   74 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------hCCCchhhHH
Confidence            3444555555555555566666555555544      2556677776

The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].

>KOG3850 consensus Predicted membrane protein [Function unknown]

Probab=83.59  E-value=10  Score=36.49  Aligned_cols=13  Identities=38%  Similarity=0.514  Sum_probs=6.7

Q ss_pred             HHhhHHHHHHHHH
Q 010571          391 IDAIKEDKRVLEL  403 (507)
Q Consensus       391 ~~~l~~~~~~~~~  403 (507)
                      ..++.++.+++++
T Consensus       262 l~aileeL~eIk~  274 (455)
T KOG3850|consen  262 LDAILEELREIKE  274 (455)
T ss_pred             HHHHHHHHHHHHH
Confidence            4455555555544

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=83.58  E-value=12  Score=39.57  Aligned_cols=8  Identities=0%  Similarity=0.414  Sum_probs=2.9

Q ss_pred             hhHHHHHH
Q 010571          414 RFREKIDE  421 (507)
Q Consensus       414 ~l~~~~~~  421 (507)
                      +|+..++.
T Consensus       398 kL~~~v~~  405 (594)
T PF05667_consen  398 KLQALVEA  405 (594)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.48  E-value=21  Score=36.35  Aligned_cols=29  Identities=14%  Similarity=0.324  Sum_probs=17.1

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      .++..|++++++++.+....+.|+.+.++
T Consensus        43 eeK~~Lkqq~eEleaeyd~~R~Eldqtke   71 (772)
T KOG0999|consen   43 EEKEDLKQQLEELEAEYDLARTELDQTKE   71 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666655555555443

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=83.48  E-value=21  Score=35.39  Aligned_cols=17  Identities=18%  Similarity=0.139  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 010571          466 TIENEVQILRQQKSAFE  482 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~  482 (507)
                      +++.-++..+-++..+|
T Consensus       302 di~E~~Es~qtRisklE  318 (395)
T PF10267_consen  302 DIWEVMESCQTRISKLE  318 (395)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44555566666666677

Its function is unknown.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=83.44  E-value=0.35  Score=52.53  Aligned_cols=101  Identities=25%  Similarity=0.433  Sum_probs=0.0

Q ss_pred             hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhH---HhHHHHHhhHhhhhh---hhhhHHHHHHHHHHHHH
Q 010571          389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS---KELSSVQGQLVAERS---RCFKLEAQIAELQKMLE  462 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~e~~~~~~~~~~~~~---~~~~~e~~~~e~~~~~~  462 (507)
                      ..+..++.+....+......+.+...++..+..++.+++++.   ++.+..+++++.++.   ++.+++..++..+++|+
T Consensus       246 ~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLe  325 (713)
T PF05622_consen  246 AQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLE  325 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444443333333333334444444444444444443   345556666666643   45566777777777777


Q ss_pred             hHHHHHHHHHHHHH-------hHHHHHHHHHHhh
Q 010571          463 SSQTIENEVQILRQ-------QKSAFEQEMERAT  489 (507)
Q Consensus       463 ~~~~~e~e~~~~~~-------~~~~~~~~~~~~~  489 (507)
                      ....+.+++..|+.       ++..+|+++...+
T Consensus       326 d~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~  359 (713)
T PF05622_consen  326 DLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR  359 (713)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            77654444433333       4445555554433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=83.41  E-value=23  Score=28.84  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHH
Q 010571          465 QTIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       465 ~~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      ..+..++..++.+++.+++.++
T Consensus        84 ~~l~~~l~~l~~~~~k~e~~l~  105 (126)
T PF13863_consen   84 KKLKAELEELKSEISKLEEKLE  105 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555554443

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=83.40  E-value=16  Score=27.04  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=32.4

Q ss_pred             HHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHH-HHHHHHHHhHHHHHHHHH
Q 010571          417 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIE-NEVQILRQQKSAFEQEME  486 (507)
Q Consensus       417 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e-~e~~~~~~~~~~~~~~~~  486 (507)
                      +.++.++.+.+...+++...+.+....+.++...-++++.+++.+-+++... +-.+++..++..|..+++
T Consensus         4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe   74 (79)
T PF08581_consen    4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555544444333333332222223333333333333222 234556666667777765

; PDB: 3VP9_B 3VP8_B.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=83.35  E-value=30  Score=30.25  Aligned_cols=10  Identities=30%  Similarity=0.527  Sum_probs=3.7

Q ss_pred             HHHHHhhHhh
Q 010571          433 LSSVQGQLVA  442 (507)
Q Consensus       433 ~~~~~~~~~~  442 (507)
                      |..+..+++.
T Consensus        90 L~iiE~dLE~   99 (205)
T KOG1003|consen   90 LVIIEGELER   99 (205)
T ss_pred             HHHHHhHHHH
Confidence            3333333333

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=83.25  E-value=53  Score=32.94  Aligned_cols=88  Identities=13%  Similarity=0.148  Sum_probs=45.7

Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC-----cEEeeeecCCCCCCCcceEEE-EE
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-----EWSQPEIKGDLVTGRAGHAGI-TI  252 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~-~~  252 (507)
                      .|+.+.    .|.++...++....++.++++|..+      .++.-+....     .|..+    +.+..+.....+ ..
T Consensus       271 ~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~----~~~~~~~~l~~v~~~  336 (398)
T PLN00033        271 YWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEA----DIKSRGFGILDVGYR  336 (398)
T ss_pred             ceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeec----ccCCCCcceEEEEEc
Confidence            489886    3444544555555677788877543      2333222233     34443    223233333333 33


Q ss_pred             -CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          253 -DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       253 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                       ++.++++|.. +     -++.-...-.+|+.+..
T Consensus       337 ~d~~~~a~G~~-G-----~v~~s~D~G~tW~~~~~  365 (398)
T PLN00033        337 SKKEAWAAGGS-G-----ILLRSTDGGKSWKRDKG  365 (398)
T ss_pred             CCCcEEEEECC-C-----cEEEeCCCCcceeEccc
Confidence             4577777753 2     23444556678998653

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=83.06  E-value=3.7  Score=42.82  Aligned_cols=19  Identities=11%  Similarity=0.352  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHhHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~  484 (507)
                      +++...++++++..++++.
T Consensus       241 ~l~~~~~~~~~~~~~lk~a  259 (555)
T TIGR03545       241 DLQNDKKQLKADLAELKKA  259 (555)
T ss_pred             HHHHhHHHHHHHHHHHHhc
Confidence            3444444444444444433

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=83.01  E-value=65  Score=33.79  Aligned_cols=159  Identities=13%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             eEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEE
Q 010571           96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        96 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~  172 (507)
                      +..-++.+..+|-..     .-.++.+.+..+  .++.....+|..+...+...+   ++++|+..      ...-+++.
T Consensus       389 aiSPdg~~Ia~st~~-----~~~iy~L~~~~~--vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~  455 (691)
T KOG2048|consen  389 AISPDGNLIAISTVS-----RTKIYRLQPDPN--VKVINVDDVPLALLDASAISFTIDKNKLFLVS------KNIFSLEE  455 (691)
T ss_pred             ccCCCCCEEEEeecc-----ceEEEEeccCcc--eeEEEeccchhhhccceeeEEEecCceEEEEe------cccceeEE
Confidence            333355566665322     112555555442  122222378877755554433   56777765      12446888


Q ss_pred             EEcCCCcEEEeecCCCC-CCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE
Q 010571          173 LDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT  251 (507)
Q Consensus       173 ~d~~t~~W~~~~~~g~~-p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~  251 (507)
                      |+..+.+..++....+- ..+-..+-++.-.+++|.++++.      ..|++|++.+..-..+..  .+   +...+++.
T Consensus       456 ~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~~--rl---n~~vTa~~  524 (691)
T KOG2048|consen  456 FELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLETLESHLLKV--RL---NIDVTAAA  524 (691)
T ss_pred             EEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEcccceeecchh--cc---Ccceeeee
Confidence            88888777776532111 11112222233346678887754      469999999987766421  11   12223333


Q ss_pred             E----CCEEEEEeccCCCCCcceEEEEEcCc---CeeEEe
Q 010571          252 I----DENWYIVGGGDNNNGCQETIVLNMTK---LAWSIL  284 (507)
Q Consensus       252 ~----~~~l~v~GG~~~~~~~~d~~~~d~~~---~~W~~~  284 (507)
                      +    .+.+.|.-      .-+.++.||+..   .+|++.
T Consensus       525 ~~~~~~~~lvvat------s~nQv~efdi~~~~l~~ws~~  558 (691)
T KOG2048|consen  525 FSPFVRNRLVVAT------SNNQVFEFDIEARNLTRWSKN  558 (691)
T ss_pred             ccccccCcEEEEe------cCCeEEEEecchhhhhhhhhc
Confidence            2    35566652      224688888843   356654

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=82.99  E-value=23  Score=33.33  Aligned_cols=34  Identities=24%  Similarity=0.502  Sum_probs=16.8

Q ss_pred             chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHH
Q 010571          387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKID  420 (507)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  420 (507)
                      +...+.++++.+..+...++..+....++.....
T Consensus        67 ineev~elK~kR~ein~kl~eL~~~~~~l~e~~~  100 (294)
T COG1340          67 INEEVQELKEKRDEINAKLQELRKEYRELKEKRN  100 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344555555555555555544444444444444

>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]

Probab=82.99  E-value=22  Score=32.55  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=24.0

Q ss_pred             chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHh
Q 010571          387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE  432 (507)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e  432 (507)
                      ++..++.++.+.......|..+.-+.+.|..+|+..+.+++..++.
T Consensus       110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkR  155 (338)
T KOG3647|consen  110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKR  155 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444445555555555555655555555555544443

>KOG3990 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.94  E-value=5.5  Score=35.87  Aligned_cols=17  Identities=29%  Similarity=0.364  Sum_probs=9.5

Q ss_pred             HHhhHHHHHHHHHhhHH
Q 010571          391 IDAIKEDKRVLELSLTE  407 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~  407 (507)
                      +++|+++.+.++..|.+
T Consensus       227 i~~lkeeia~Lkk~L~q  243 (305)
T KOG3990|consen  227 IQKLKEEIARLKKLLHQ  243 (305)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            56666666655544433

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=82.93  E-value=12  Score=30.79  Aligned_cols=52  Identities=21%  Similarity=0.233  Sum_probs=22.6

Q ss_pred             hhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571          413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       413 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ..++..++.....+......+.....++..+....++.++....+..++...
T Consensus        22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~   73 (135)
T TIGR03495        22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQA   73 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444443344444444443333

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=82.84  E-value=30  Score=29.86  Aligned_cols=48  Identities=13%  Similarity=0.115  Sum_probs=25.0

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      ...+.+++..+...+........+.++.+.+.+..+.+.+++.+++..
T Consensus        48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~   95 (167)
T PRK08475         48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVE   95 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555545555555555555555555554444433

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.74  E-value=15  Score=26.66  Aligned_cols=11  Identities=9%  Similarity=0.277  Sum_probs=4.1

Q ss_pred             hHHHHHHhhcc
Q 010571          415 FREKIDEVNST  425 (507)
Q Consensus       415 l~~~~~~~~~~  425 (507)
                      |+.++++++++
T Consensus        23 Lq~e~eeLke~   33 (72)
T PF06005_consen   23 LQMENEELKEK   33 (72)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp

Probab=82.67  E-value=13  Score=34.31  Aligned_cols=27  Identities=19%  Similarity=0.393  Sum_probs=12.3

Q ss_pred             hHHHHHHhhccchhhHHhHHHHHhhHh
Q 010571          415 FREKIDEVNSTHSELSKELSSVQGQLV  441 (507)
Q Consensus       415 l~~~~~~~~~~~~~~~~e~~~~~~~~~  441 (507)
                      |+.+|.+-++.+.+.+.|+.+++.||-
T Consensus        73 LkakLkes~~~l~dRetEI~eLksQL~   99 (305)
T PF15290_consen   73 LKAKLKESENRLHDRETEIDELKSQLA   99 (305)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344444444444444444444454443

>smart00284 OLF Olfactomedin-like domains

Probab=82.58  E-value=41  Score=31.22  Aligned_cols=166  Identities=10%  Similarity=0.004  Sum_probs=86.6

Q ss_pred             CCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCcccee---eEEEC
Q 010571           24 RPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC---MVKWG  100 (507)
Q Consensus        24 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~---~~~~~  100 (507)
                      +|.+-.|.+.++.++.||.--.     .+..+..||+.+.+-.....++...     ..  ...|-...+++   .++-.
T Consensus        70 Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~-----y~--~~~~Y~~~~~sdiDlAvDE  137 (255)
T smart00284       70 LPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAG-----YN--NRFPYAWGGFSDIDLAVDE  137 (255)
T ss_pred             CCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccc-----cc--cccccccCCCccEEEEEcC
Confidence            4555667777888888888543     3467999999998765444332110     00  00111111222   23333


Q ss_pred             CEEEEE-cccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571          101 TKLLIL-GGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       101 ~~iyv~-GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~  179 (507)
                      +-|.++ .......  .-.+-.+||.|..-...-.+ ..|....+ -+..+-+.||+.-.....  ...-.++||+.+.+
T Consensus       138 ~GLWvIYat~~~~g--~ivvSkLnp~tL~ve~tW~T-~~~k~sa~-naFmvCGvLY~~~s~~~~--~~~I~yayDt~t~~  211 (255)
T smart00284      138 NGLWVIYATEQNAG--KIVISKLNPATLTIENTWIT-TYNKRSAS-NAFMICGILYVTRSLGSK--GEKVFYAYDTNTGK  211 (255)
T ss_pred             CceEEEEeccCCCC--CEEEEeeCcccceEEEEEEc-CCCccccc-ccEEEeeEEEEEccCCCC--CcEEEEEEECCCCc
Confidence            444443 2222211  23456788877654443322 22333222 445567788888532211  13347889998876


Q ss_pred             EEEeecCCCCCCCCCCceEEEE--cCcEEEEE
Q 010571          180 WDAVEVTQTPPAPRYDHSAALH--ANRYLIVF  209 (507)
Q Consensus       180 W~~~~~~g~~p~~r~~~~~~~~--~~~~l~i~  209 (507)
                      =..+.+  +.+.+...++++.+  .++.||++
T Consensus       212 ~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~w  241 (255)
T smart00284      212 EGHLDI--PFENMYEYISMLDYNPNDRKLYAW  241 (255)
T ss_pred             cceeee--eeccccccceeceeCCCCCeEEEE
Confidence            444432  34444455555555  34678876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=82.58  E-value=46  Score=32.20  Aligned_cols=135  Identities=14%  Similarity=0.142  Sum_probs=77.0

Q ss_pred             CEEEEEcCCC--C--CccC-CceEEEECCCC-----ceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEc
Q 010571           38 QKLYIVGGSR--N--GRFL-SDVQVFDLRSL-----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        38 ~~lyv~GG~~--~--~~~~-~~~~~~d~~t~-----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~G  107 (507)
                      ..++++|...  +  .... ..+++|+....     +++.+.....                +-.-++++.++++|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~----------------~g~V~ai~~~~~~lv~~~  105 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV----------------KGPVTAICSFNGRLVVAV  105 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE----------------SS-EEEEEEETTEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee----------------cCcceEhhhhCCEEEEee
Confidence            4677777521  1  1122 56899999885     5555544321                233567778899977766


Q ss_pred             ccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEE--EEEcCCCcEEEee
Q 010571          108 GHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH--FLDLETMTWDAVE  184 (507)
Q Consensus       108 G~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~--~~d~~t~~W~~~~  184 (507)
                      |        +.+.+|++.... +....   .+..+....++.++++.|++ |-      ...++.  .|+....+-..+.
T Consensus       106 g--------~~l~v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~I~v-gD------~~~sv~~~~~~~~~~~l~~va  167 (321)
T PF03178_consen  106 G--------NKLYVYDLDNSKTLLKKA---FYDSPFYITSLSVFKNYILV-GD------AMKSVSLLRYDEENNKLILVA  167 (321)
T ss_dssp             T--------TEEEEEEEETTSSEEEEE---EE-BSSSEEEEEEETTEEEE-EE------SSSSEEEEEEETTTE-EEEEE
T ss_pred             c--------CEEEEEEccCcccchhhh---eecceEEEEEEeccccEEEE-EE------cccCEEEEEEEccCCEEEEEE
Confidence            5        247788887777 77776   44444466667777886665 32      233444  5576555566665


Q ss_pred             cCCCCCCCCCCceEEEE-cCcEEEEEe
Q 010571          185 VTQTPPAPRYDHSAALH-ANRYLIVFG  210 (507)
Q Consensus       185 ~~g~~p~~r~~~~~~~~-~~~~l~i~G  210 (507)
                      -   -+.++...++..+ .++ .++.+
T Consensus       168 ~---d~~~~~v~~~~~l~d~~-~~i~~  190 (321)
T PF03178_consen  168 R---DYQPRWVTAAEFLVDED-TIIVG  190 (321)
T ss_dssp             E---ESS-BEEEEEEEE-SSS-EEEEE
T ss_pred             e---cCCCccEEEEEEecCCc-EEEEE
Confidence            2   3345555555566 444 44433

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=82.57  E-value=13  Score=31.63  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=8.4

Q ss_pred             HHhhccchhhHHhHHHHHhhHh
Q 010571          420 DEVNSTHSELSKELSSVQGQLV  441 (507)
Q Consensus       420 ~~~~~~~~~~~~e~~~~~~~~~  441 (507)
                      +....+++..+++++...++++
T Consensus        46 ~~~~~~l~~~~~el~~~~~~l~   67 (158)
T PF03938_consen   46 KALQKELQAKQKELQKLQQKLQ   67 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333433333333

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=82.53  E-value=82  Score=34.62  Aligned_cols=35  Identities=14%  Similarity=0.180  Sum_probs=25.4

Q ss_pred             cceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeee
Q 010571           30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRL   70 (507)
Q Consensus        30 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~   70 (507)
                      ..+-+++++.||+...      .+.++.+|..|++  |+.-+.
T Consensus       187 e~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~  223 (764)
T TIGR03074       187 QATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPK  223 (764)
T ss_pred             ccCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCC
Confidence            3445677999999855      3578999999874  876554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PTZ00421 coronin; Provisional

Probab=82.41  E-value=65  Score=33.40  Aligned_cols=64  Identities=16%  Similarity=0.108  Sum_probs=36.5

Q ss_pred             CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       152 ~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      +.+++.||.+      ..+.++|+.+.+-...- .+   ....-.++....++.+++.|+.+     ..+.+||+.++.
T Consensus       138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l-~~---h~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~  201 (493)
T PTZ00421        138 MNVLASAGAD------MVVNVWDVERGKAVEVI-KC---HSDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT  201 (493)
T ss_pred             CCEEEEEeCC------CEEEEEECCCCeEEEEE-cC---CCCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence            3577777653      25888898876532221 11   11112233334456677777765     458899998765

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=82.40  E-value=21  Score=33.14  Aligned_cols=46  Identities=9%  Similarity=0.205  Sum_probs=23.5

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV  436 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~  436 (507)
                      ...+.+++..+...+........+.++..++.+.++++.+++.+++
T Consensus        31 ~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i   76 (250)
T PRK14474         31 IQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASF   76 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555554444445555555555555554444433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=82.35  E-value=12  Score=41.43  Aligned_cols=9  Identities=22%  Similarity=0.324  Sum_probs=4.1

Q ss_pred             ceEEEECCC
Q 010571           54 DVQVFDLRS   62 (507)
Q Consensus        54 ~~~~~d~~t   62 (507)
                      -+..||+.+
T Consensus       616 v~ir~~~~~  624 (1758)
T KOG0994|consen  616 VLIRYDPRT  624 (1758)
T ss_pred             hheeccCCC
Confidence            344455444

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=82.33  E-value=21  Score=33.11  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=14.0

Q ss_pred             hhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHH
Q 010571          428 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKML  461 (507)
Q Consensus       428 ~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~  461 (507)
                      ..++.+...+.+++.+++.+.+.|..++++++++
T Consensus       197 ~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i  230 (269)
T PF05278_consen  197 EKDRKLELKKEELEELEEELKQKEKEVKEIKERI  230 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444433

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=82.27  E-value=29  Score=32.12  Aligned_cols=39  Identities=13%  Similarity=0.257  Sum_probs=17.3

Q ss_pred             HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhH
Q 010571          392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL  433 (507)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~  433 (507)
                      +.++.+..+|++....   ....|+++++.+...+....+|+
T Consensus        66 ~~ak~eLqe~eek~e~---~l~~Lq~ql~~l~akI~k~~~el  104 (258)
T PF15397_consen   66 QQAKAELQEWEEKEES---KLSKLQQQLEQLDAKIQKTQEEL  104 (258)
T ss_pred             HHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444433322   44445555555555444444443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=82.18  E-value=40  Score=30.78  Aligned_cols=139  Identities=18%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             CcEEEeecC--CCCCCCccc-ceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC
Q 010571          127 NLCGVMETS--GKVPVARGG-HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN  203 (507)
Q Consensus       127 ~~W~~~~~~--g~~p~~r~~-~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~  203 (507)
                      ..|+...+.  +..+.|-.+ +.+.--.|.|+..||-.       -+|..|+++++.+..--    -..-+-|+.+.-+.
T Consensus        99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~r----GHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREYR----GHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEEc----CCcceeeeeeeccc
Confidence            456665531  223333332 22222467888888732       58999999999877641    22345555554322


Q ss_pred             cEEEEEeCCCCCcCCCcEEEEECCCCcEEee-eec--CCCCCCCcc--eEEEEECCEEEEEeccCCCCCcceEEEEEcCc
Q 010571          204 RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP-EIK--GDLVTGRAG--HAGITIDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       204 ~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~-~~~--~~~p~~r~~--~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  278 (507)
                      .-=++.|+-++     .+-++|..+.+-.++ +.-  ..+-.|-.+  -.+...+...+++||+-.      +-++++..
T Consensus       168 ~~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~------lslwhLrs  236 (325)
T KOG0649|consen  168 NGQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK------LSLWHLRS  236 (325)
T ss_pred             CcceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc------eeEEeccC
Confidence            22344555443     366778888765553 211  112122122  245556677888887532      33455444


Q ss_pred             CeeEEeccC
Q 010571          279 LAWSILTSV  287 (507)
Q Consensus       279 ~~W~~~~~~  287 (507)
                      .+=+++-++
T Consensus       237 se~t~vfpi  245 (325)
T KOG0649|consen  237 SESTCVFPI  245 (325)
T ss_pred             CCceEEEec
Confidence            444444333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=82.10  E-value=12  Score=41.59  Aligned_cols=29  Identities=14%  Similarity=0.265  Sum_probs=12.7

Q ss_pred             HHHHHHHHHhhHHHHhhhhhhHHHHHHhh
Q 010571          395 KEDKRVLELSLTEVRTENSRFREKIDEVN  423 (507)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  423 (507)
                      +++....+..+....++..+|...+++++
T Consensus      1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444455544444444

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=82.10  E-value=20  Score=37.43  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHhHH--------HHHHHHHHHHHhHHH
Q 010571          452 AQIAELQKMLESSQ--------TIENEVQILRQQKSA  480 (507)
Q Consensus       452 ~~~~e~~~~~~~~~--------~~e~e~~~~~~~~~~  480 (507)
                      +++.++++.|+..+        -+--|+.+|+++++.
T Consensus       587 qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqa  623 (961)
T KOG4673|consen  587 QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQA  623 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555544433        223356666666653

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=82.09  E-value=19  Score=32.27  Aligned_cols=18  Identities=28%  Similarity=0.634  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHhHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~  483 (507)
                      ++..+++.+++++..+.+
T Consensus       129 el~~~le~~~~~l~~~~~  146 (292)
T KOG4005|consen  129 ELDSELELLRQELAELKQ  146 (292)
T ss_pred             HHHHHHHHHHHHHHhhHH
Confidence            444455555554443333

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=82.05  E-value=62  Score=32.89  Aligned_cols=99  Identities=14%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC----CCCcccceEEEE-------CCEEEEEcCcCCCCCccC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV----PVARGGHSVTLV-------GSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~----p~~r~~~~~~~~-------~~~l~~~GG~~~~~~~~~  168 (507)
                      ++.|+++-|.       ...-+||-.-..|....- |++    .....+|.+...       +...|+--+.++.     
T Consensus       226 g~~iLvvsg~-------aqakl~DRdG~~~~e~~K-GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt-----  292 (641)
T KOG0772|consen  226 GDQILVVSGS-------AQAKLLDRDGFEIVEFSK-GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT-----  292 (641)
T ss_pred             CCeEEEEecC-------cceeEEccCCceeeeeec-cchhhhhhhccCCceeeeeccccccCcccceEEecCCCc-----
Confidence            7888888874       346678888888877643 221    122344544432       2246666555432     


Q ss_pred             cEEEEEcCC--CcEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCC
Q 010571          169 DVHFLDLET--MTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSH  214 (507)
Q Consensus       169 ~~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~  214 (507)
                       +-++|...  .+-..+.+.+.. ..|...+.|.++ ++.+ |.+|+.+
T Consensus       293 -lRiWdv~~~k~q~qVik~k~~~-g~Rv~~tsC~~nrdg~~-iAagc~D  338 (641)
T KOG0772|consen  293 -LRIWDVNNTKSQLQVIKTKPAG-GKRVPVTSCAWNRDGKL-IAAGCLD  338 (641)
T ss_pred             -EEEEecCCchhheeEEeeccCC-CcccCceeeecCCCcch-hhhcccC
Confidence             33333322  233333333222 245555555553 4444 7777654

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=82.01  E-value=17  Score=26.57  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=16.4

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      ....-|+.+|+++++++..+.++.+..+...
T Consensus        18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r   48 (79)
T PRK15422         18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQR   48 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3445555666666666655555544443333

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=81.95  E-value=17  Score=40.32  Aligned_cols=19  Identities=21%  Similarity=0.198  Sum_probs=11.5

Q ss_pred             hhhHHHHhhccccccCCcc
Q 010571          352 SVTAAYALAKSEKLDIPKT  370 (507)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~  370 (507)
                      ..|-.|+|.-.....-|.+
T Consensus       378 lSTLEYA~RAKnIkNKPev  396 (1041)
T KOG0243|consen  378 LSTLEYAHRAKNIKNKPEV  396 (1041)
T ss_pred             HHHHHHHHHhhhccCCCcc
Confidence            3455677766666655555

>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []

Probab=81.86  E-value=2.9  Score=42.13  Aligned_cols=55  Identities=24%  Similarity=0.343  Sum_probs=33.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCC
Q 010571          443 ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSG  497 (507)
Q Consensus       443 ~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (507)
                      +++++.+++.++.++++++.+..+.++++.++++|+++++++++++++...+.+.
T Consensus       247 l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~  301 (406)
T PF02388_consen  247 LQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAEYGD  301 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3444455555555555555555566677777777777777777776665444443

These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=81.75  E-value=22  Score=35.38  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=9.0

Q ss_pred             HHHhhHHHHhhhhhhHHHHHH
Q 010571          401 LELSLTEVRTENSRFREKIDE  421 (507)
Q Consensus       401 ~~~~~~~~~~~~~~l~~~~~~  421 (507)
                      .+..|++.+.+++-|+-++..
T Consensus       402 tqk~LqEsr~eKetLqlelkK  422 (527)
T PF15066_consen  402 TQKHLQESRNEKETLQLELKK  422 (527)
T ss_pred             HHHHHHHHHhhHHHHHHHHHH
Confidence            333444444444444444433

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=81.48  E-value=44  Score=30.79  Aligned_cols=272  Identities=14%  Similarity=0.170  Sum_probs=112.0

Q ss_pred             EEEECCEEEE--EcC-CCCCccCCceEEEECCC-CceeEeeeccccccCccccCCccCCCCCccce--eeEEECCEEEEE
Q 010571           33 AAVFDQKLYI--VGG-SRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDH--CMVKWGTKLLIL  106 (507)
Q Consensus        33 ~~~~~~~lyv--~GG-~~~~~~~~~~~~~d~~t-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~--~~~~~~~~iyv~  106 (507)
                      +.+.++.||.  ++| .++-..+.-.|+=.-.. ++|....-+...          ++--+...+|  ++-+++|+||++
T Consensus        21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~----------H~~yptvnyHCmSMGv~~NRLfa~   90 (367)
T PF12217_consen   21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL----------HPDYPTVNYHCMSMGVVGNRLFAV   90 (367)
T ss_dssp             -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS-------------TTTTTEEEE-B-EEEETTEEEEE
T ss_pred             ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhc----------CCCCCccceeeeeeeeecceeeEE
Confidence            3456777773  444 33333333344444444 467654333211          2222334444  466789999987


Q ss_pred             cccCC-CCCCcceEEEEE---CCCCcEEEeecCCCCCC-------CcccceEEEECCEEEEEcCcCCCCC-ccCcEEEEE
Q 010571          107 GGHYK-KSSDSMIVRFID---LETNLCGVMETSGKVPV-------ARGGHSVTLVGSRLIIFGGEDRSRK-LLNDVHFLD  174 (507)
Q Consensus       107 GG~~~-~~~~~~~~~~~d---~~t~~W~~~~~~g~~p~-------~r~~~~~~~~~~~l~~~GG~~~~~~-~~~~~~~~d  174 (507)
                      =-... ..........|+   +.++.|+.-... ..|.       ...-|+.+.+++.-|.+|=.+++-. .--.+..|.
T Consensus        91 iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs  169 (367)
T PF12217_consen   91 IETRTVASNKMVRAELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFS  169 (367)
T ss_dssp             EEEEETTT--EEEEEEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEET
T ss_pred             EeehhhhhhhhhhhhhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEec
Confidence            53321 112233344444   567888765432 2332       3455788888887778876544321 111233332


Q ss_pred             cC--CC-cEEEeecCCCCCCCCCCceEEEEcCcEEEEEe-CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEE
Q 010571          175 LE--TM-TWDAVEVTQTPPAPRYDHSAALHANRYLIVFG-GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI  250 (507)
Q Consensus       175 ~~--t~-~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G-G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~  250 (507)
                      ..  +. ....-.+..... +-..-.++.+-++.||+.- |......-..+++-+.....|..+...  -...-...-.+
T Consensus       170 ~~~~sp~~~vrr~i~sey~-~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFa  246 (367)
T PF12217_consen  170 DAFASPGVFVRRIIPSEYE-RNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFA  246 (367)
T ss_dssp             TTTT-TT--EEEE--GGG--TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EE
T ss_pred             ccccCCcceeeeechhhhc-cccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCce
Confidence            11  11 111111100111 1111123344566677654 333323345678888888899997531  11112222456


Q ss_pred             EECCEEEEEeccCC---------CC----CcceEEEEEcC-------cCeeEEeccCCCCCCCCCCCCceEEEEEcCceE
Q 010571          251 TIDENWYIVGGGDN---------NN----GCQETIVLNMT-------KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH  310 (507)
Q Consensus       251 ~~~~~l~v~GG~~~---------~~----~~~d~~~~d~~-------~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  310 (507)
                      .+++.|||||--..         +.    ....++....+       .-.|..|..---.--....+..+.++++.++-.
T Consensus       247 kvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~l  326 (367)
T PF12217_consen  247 KVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWL  326 (367)
T ss_dssp             EETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEE
T ss_pred             eeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEE
Confidence            77999999995311         11    12233433333       334444322100001123345566677776645


Q ss_pred             EEEEcccC
Q 010571          311 LVAFGGYN  318 (507)
Q Consensus       311 l~v~GG~~  318 (507)
                      -++|||.+
T Consensus       327 yy~FGgED  334 (367)
T PF12217_consen  327 YYIFGGED  334 (367)
T ss_dssp             EEEEEEB-
T ss_pred             EEEecCcc
Confidence            56899965

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=81.41  E-value=9.5  Score=33.07  Aligned_cols=13  Identities=8%  Similarity=0.266  Sum_probs=4.7

Q ss_pred             hhhhhHHHHHHhh
Q 010571          411 ENSRFREKIDEVN  423 (507)
Q Consensus       411 ~~~~l~~~~~~~~  423 (507)
                      +...|+.++..+.
T Consensus        94 ~~k~l~~eL~~L~  106 (169)
T PF07106_consen   94 EVKSLEAELASLS  106 (169)
T ss_pred             HHHHHHHHHHHHh
Confidence            3333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=81.38  E-value=1.1e+02  Score=35.26  Aligned_cols=223  Identities=13%  Similarity=0.070  Sum_probs=0.0

Q ss_pred             ceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEc
Q 010571           31 HAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILG  107 (507)
Q Consensus        31 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~G  107 (507)
                      +++++.  ++.|||.-.     ....+.++|+.++.-..+...+...............+...-...++.- ++.||+..
T Consensus       627 ~GIavd~~gn~LYVaDt-----~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        627 QGLAYNAKKNLLYVADT-----ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cEEEEeCCCCEEEEEeC-----CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE


Q ss_pred             ccCCCCCCcceEEEEECCCCcEEEeecCC------------CCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEc
Q 010571          108 GHYKKSSDSMIVRFIDLETNLCGVMETSG------------KVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       108 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g------------~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                      ..      .+.+++||+.++....+...|            .....-.+.+...-++.||+....      .+.|.+||+
T Consensus       702 ~~------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~  769 (1057)
T PLN02919        702 AG------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDL  769 (1057)
T ss_pred             CC------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEEC


Q ss_pred             CCCcEEEeecCCCCCCCC-----------------CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecC
Q 010571          176 ETMTWDAVEVTQTPPAPR-----------------YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  238 (507)
Q Consensus       176 ~t~~W~~~~~~g~~p~~r-----------------~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  238 (507)
                      .++....+...+......                 .-.++++..++.+||....+     +.|.+||+.++....+...+
T Consensus       770 ~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        770 KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccC


Q ss_pred             C--------CCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571          239 D--------LVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       239 ~--------~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      .        .+........+.+  ++++||....++.     +.++|+.+..
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~-----Irvid~~~~~  891 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL-----IRYLDLNKGE  891 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE-----EEEEECCCCc

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=81.35  E-value=54  Score=31.70  Aligned_cols=138  Identities=17%  Similarity=0.197  Sum_probs=74.1

Q ss_pred             CEEEEEcccCCCCC---Cc-ceEEEEECCCC-----cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEE
Q 010571          101 TKLLILGGHYKKSS---DS-MIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  171 (507)
Q Consensus       101 ~~iyv~GG~~~~~~---~~-~~~~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~  171 (507)
                      ...+++|.......   .. -.+.+|+....     +++.+.   ..+..-.-++++.+++++++.-|        +.+.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g--------~~l~  110 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG--------NKLY  110 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec--------CEEE
Confidence            46677775432221   12 56889998885     566554   22223335667778999766655        3688


Q ss_pred             EEEcCCCc-EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEE
Q 010571          172 FLDLETMT-WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI  250 (507)
Q Consensus       172 ~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~  250 (507)
                      +|++...+ +......   ..+-...++.++ ++ .+++|-...+   -.++.|+....+...+..   -+.++.-.++.
T Consensus       111 v~~l~~~~~l~~~~~~---~~~~~i~sl~~~-~~-~I~vgD~~~s---v~~~~~~~~~~~l~~va~---d~~~~~v~~~~  179 (321)
T PF03178_consen  111 VYDLDNSKTLLKKAFY---DSPFYITSLSVF-KN-YILVGDAMKS---VSLLRYDEENNKLILVAR---DYQPRWVTAAE  179 (321)
T ss_dssp             EEEEETTSSEEEEEEE----BSSSEEEEEEE-TT-EEEEEESSSS---EEEEEEETTTE-EEEEEE---ESS-BEEEEEE
T ss_pred             EEEccCcccchhhhee---cceEEEEEEecc-cc-EEEEEEcccC---EEEEEEEccCCEEEEEEe---cCCCccEEEEE
Confidence            88888777 8777643   222233344444 55 4445543211   234456765555666532   33466655666


Q ss_pred             EE-CCEEEEEec
Q 010571          251 TI-DENWYIVGG  261 (507)
Q Consensus       251 ~~-~~~l~v~GG  261 (507)
                      .+ ++. .++++
T Consensus       180 ~l~d~~-~~i~~  190 (321)
T PF03178_consen  180 FLVDED-TIIVG  190 (321)
T ss_dssp             EE-SSS-EEEEE
T ss_pred             EecCCc-EEEEE
Confidence            66 655 44444

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=81.29  E-value=31  Score=30.99  Aligned_cols=66  Identities=23%  Similarity=0.261  Sum_probs=30.8

Q ss_pred             HHhhccchhhHHhHHHHHhhHhhhhh---hhhhHHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHH
Q 010571          420 DEVNSTHSELSKELSSVQGQLVAERS---RCFKLEAQIAELQKMLESSQ-----TIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       420 ~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~~~e~~~~e~~~~~~~~~-----~~e~e~~~~~~~~~~~~~~~  485 (507)
                      ..++.++-+.++++..++.+++.++.   .-...+.+|+.+++++...+     .+.+...+..+++..+++++
T Consensus        50 ~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~  123 (206)
T PF14988_consen   50 SELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA  123 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444432   22334455555555555544     33334445555555666655

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=81.26  E-value=24  Score=32.72  Aligned_cols=47  Identities=15%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHH
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~  437 (507)
                      ...+.+++..+...+........+....+.+.+..+.+.+++.+++.
T Consensus        31 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~   77 (246)
T TIGR03321        31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLL   77 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555555444444455555555555555544444433

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=81.24  E-value=18  Score=40.56  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=12.0

Q ss_pred             hHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          439 QLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       439 ~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      .+.+++++..+++.++.++++++..++
T Consensus       502 k~~~~~~~~~~l~~~~~~~~eele~~q  528 (1317)
T KOG0612|consen  502 KLSEEEAKKRKLEALVRQLEEELEDAQ  528 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444443

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=81.14  E-value=29  Score=30.51  Aligned_cols=48  Identities=8%  Similarity=0.158  Sum_probs=27.4

Q ss_pred             HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhh
Q 010571          392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ  439 (507)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~  439 (507)
                      ..+.+++..+...+........+..+.+.+.+.++.+.+.+.+++..+
T Consensus        54 ~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~  101 (184)
T PRK13455         54 GMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA  101 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555566666666666665555555444

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=81.08  E-value=25  Score=33.57  Aligned_cols=15  Identities=27%  Similarity=0.388  Sum_probs=5.5

Q ss_pred             hhhhhhhHHHHHHHH
Q 010571          443 ERSRCFKLEAQIAEL  457 (507)
Q Consensus       443 ~~~~~~~~e~~~~e~  457 (507)
                      ++.+++++++.+.++
T Consensus       117 Lkd~lee~eE~~~~~  131 (302)
T PF09738_consen  117 LKDKLEELEETLAQL  131 (302)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []

Probab=80.96  E-value=30  Score=28.81  Aligned_cols=54  Identities=4%  Similarity=0.099  Sum_probs=26.1

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ...+++..++.-.++.+.+.....++..+.+..++.+.+++.++.+.++..+..
T Consensus        61 ~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k  114 (139)
T PF05615_consen   61 SILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNK  114 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555555555555555555555554444444433333

This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=80.92  E-value=14  Score=40.40  Aligned_cols=55  Identities=20%  Similarity=0.186  Sum_probs=26.5

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      +.+.++.++.++++++...++++++.+..++.+++...+++..+...+++...++
T Consensus       644 ~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie  698 (1072)
T KOG0979|consen  644 EIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIE  698 (1072)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3333444445555555555555555555555555444444444444444443333

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.84  E-value=18  Score=35.77  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=13.5

Q ss_pred             HHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 010571          459 KMLESSQTIENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       459 ~~~~~~~~~e~e~~~~~~~~~~~~~~~  485 (507)
                      ++.+.+.+...+-.+||+|+..+...+
T Consensus       400 Kq~~DI~Kil~etreLqkq~ns~se~L  426 (521)
T KOG1937|consen  400 KQEQDIVKILEETRELQKQENSESEAL  426 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555556666655544443

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=80.78  E-value=24  Score=39.13  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=18.9

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLV  441 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~  441 (507)
                      +......+|++++.+++.+++++.++++.+.
T Consensus       442 e~~~~~~~ieele~el~~~~~~l~~~~e~~~  472 (1041)
T KOG0243|consen  442 EKKEMAEQIEELEEELENLEKQLKDLTELYM  472 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444556667777777776666666555444

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.77  E-value=13  Score=35.37  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=8.6

Q ss_pred             HHhhccchhhHHhHHHHHhhHhhh
Q 010571          420 DEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       420 ~~~~~~~~~~~~e~~~~~~~~~~~  443 (507)
                      +++....++++.+++.++++.+.+
T Consensus       242 EeL~~G~~kL~~~~etLEqq~~~L  265 (365)
T KOG2391|consen  242 EELNIGKQKLVAMKETLEQQLQSL  265 (365)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif

Probab=80.75  E-value=13  Score=28.75  Aligned_cols=14  Identities=14%  Similarity=0.456  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHhHH
Q 010571          466 TIENEVQILRQQKS  479 (507)
Q Consensus       466 ~~e~e~~~~~~~~~  479 (507)
                      .|++.++.+|.+++
T Consensus        58 QL~kRV~~LQ~El~   71 (102)
T PF10205_consen   58 QLTKRVEVLQEELE   71 (102)
T ss_pred             HHHHHHHHHHHHHH
Confidence            56666666666655

This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.

>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3

Probab=80.75  E-value=10  Score=33.22  Aligned_cols=13  Identities=31%  Similarity=0.330  Sum_probs=5.2

Q ss_pred             hhHHHHHHHHHhh
Q 010571          393 AIKEDKRVLELSL  405 (507)
Q Consensus       393 ~l~~~~~~~~~~~  405 (507)
                      .|+.+...++..+
T Consensus       100 rLkrELa~Le~~l  112 (195)
T PF12761_consen  100 RLKRELAELEEKL  112 (195)
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444443333

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=80.63  E-value=33  Score=29.46  Aligned_cols=48  Identities=13%  Similarity=0.182  Sum_probs=27.1

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHh
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG  438 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~  438 (507)
                      ...+.+++..+...+........+..+...+.++.+.+.+++.+.+..
T Consensus        34 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~   81 (164)
T PRK14471         34 LGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILK   81 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666555555555555556666555555555444433

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=80.63  E-value=7  Score=34.70  Aligned_cols=33  Identities=36%  Similarity=0.598  Sum_probs=14.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010571          449 KLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       449 ~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~  484 (507)
                      +.+++++++++++.+   .+++.+.+++|.+.+++|
T Consensus       158 ~~~~ei~~lk~el~~---~~~~~~~LkkQ~~~l~~e  190 (192)
T PF05529_consen  158 KLSEEIEKLKKELEK---KEKEIEALKKQSEGLQKE  190 (192)
T ss_pred             hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence            333444444444333   344444555554444443

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=80.54  E-value=23  Score=31.27  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=34.6

Q ss_pred             HhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHH----HHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571          421 EVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ----KMLESSQTIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       421 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~----~~~~~~~~~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      .++.++.+.+.+..+...++..++.++.+++++.+.+.    ....+...++...+.+.++....+.+.+.
T Consensus       114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~  184 (190)
T PF05266_consen  114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS  184 (190)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444445555554433333    22334446777777788877777777653

>smart00284 OLF Olfactomedin-like domains

Probab=80.43  E-value=50  Score=30.72  Aligned_cols=162  Identities=14%  Similarity=0.046  Sum_probs=85.3

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEEC----CCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEc
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDL----ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~----~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                      ++++|++.+....   .+.+..|..    ..+.+...-   .+|.+-.|...+++++.+|+.-..      .+.|.+||+
T Consensus        34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~~------s~~iiKydL  101 (255)
T smart00284       34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKFN------SHDICRFDL  101 (255)
T ss_pred             CceEEEEccccCC---CcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEecC------CccEEEEEC
Confidence            4778888665311   234556542    234443332   577788888899999999985442      467999999


Q ss_pred             CCCcEEEeec---CC---CCCCCCCC---ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc----EEeeeecCCCCC
Q 010571          176 ETMTWDAVEV---TQ---TPPAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEIKGDLVT  242 (507)
Q Consensus       176 ~t~~W~~~~~---~g---~~p~~r~~---~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~----W~~~~~~~~~p~  242 (507)
                      .+.+-.....   .+   ..|-...+   .-.++-.++ |+++=....+.-.--+-.+|+.+..    |..     ..+.
T Consensus       102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G-LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T-----~~~k  175 (255)
T smart00284      102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG-LWVIYATEQNAGKIVISKLNPATLTIENTWIT-----TYNK  175 (255)
T ss_pred             CCCcEEEEEecCccccccccccccCCCccEEEEEcCCc-eEEEEeccCCCCCEEEEeeCcccceEEEEEEc-----CCCc
Confidence            9987653331   10   11111111   122333445 5554322222111123456666543    543     2332


Q ss_pred             CCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCee
Q 010571          243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       243 ~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  281 (507)
                      + ....++++-+.||++-... .....-.+.||+.+.+=
T Consensus       176 ~-sa~naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~~  212 (255)
T smart00284      176 R-SASNAFMICGILYVTRSLG-SKGEKVFYAYDTNTGKE  212 (255)
T ss_pred             c-cccccEEEeeEEEEEccCC-CCCcEEEEEEECCCCcc
Confidence            2 2225666677888874211 11122367899888753

>TIGR00634 recN DNA repair protein RecN

Probab=80.38  E-value=11  Score=39.86  Aligned_cols=8  Identities=13%  Similarity=0.476  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 010571          455 AELQKMLE  462 (507)
Q Consensus       455 ~e~~~~~~  462 (507)
                      .++++++.
T Consensus       332 ~~l~~eL~  339 (563)
T TIGR00634       332 EKIKEELD  339 (563)
T ss_pred             HHHHHHHH
Confidence            33333333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=80.37  E-value=24  Score=38.48  Aligned_cols=18  Identities=17%  Similarity=0.558  Sum_probs=9.2

Q ss_pred             HHHHHHHHHhHHHHHHHH
Q 010571          468 ENEVQILRQQKSAFEQEM  485 (507)
Q Consensus       468 e~e~~~~~~~~~~~~~~~  485 (507)
                      +.++.+++.+++.++..+
T Consensus       391 e~ki~~Lq~kie~Lee~l  408 (775)
T PF10174_consen  391 ERKINVLQKKIENLEEQL  408 (775)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345555555555444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=80.28  E-value=25  Score=34.61  Aligned_cols=35  Identities=29%  Similarity=0.292  Sum_probs=14.4

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS  445 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  445 (507)
                      +..+|+..+..++...+++..+.+...++++.++.
T Consensus       312 entelRs~~arlksl~dklaee~qr~sd~LE~lrl  346 (502)
T KOG0982|consen  312 ENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL  346 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            33344444444444444444444444444444333

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=80.26  E-value=29  Score=27.89  Aligned_cols=17  Identities=18%  Similarity=0.515  Sum_probs=6.5

Q ss_pred             HHHHHHHhHHHHHHHHH
Q 010571          470 EVQILRQQKSAFEQEME  486 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~~  486 (507)
                      ++..+.++.+.++++++
T Consensus        85 ri~tLekQe~~l~e~l~  101 (119)
T COG1382          85 RIKTLEKQEEKLQERLE  101 (119)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=80.24  E-value=15  Score=31.34  Aligned_cols=24  Identities=13%  Similarity=0.249  Sum_probs=11.1

Q ss_pred             hhhhHHHHHHhhccchhhHHhHHH
Q 010571          412 NSRFREKIDEVNSTHSELSKELSS  435 (507)
Q Consensus       412 ~~~l~~~~~~~~~~~~~~~~e~~~  435 (507)
                      ...++.+++..+.+++...++++.
T Consensus        45 ~~~~~~~l~~~~~el~~~~~~l~~   68 (158)
T PF03938_consen   45 FKALQKELQAKQKELQKLQQKLQS   68 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555444444443

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=80.10  E-value=21  Score=36.37  Aligned_cols=46  Identities=15%  Similarity=0.160  Sum_probs=21.9

Q ss_pred             HhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHH
Q 010571          392 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~  437 (507)
                      ..+++++..+...+....+-..++.+..+++++.+++.++|.+++.
T Consensus        28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii   73 (445)
T PRK13428         28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVV   73 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554444444444444444444555444444433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=80.05  E-value=69  Score=32.14  Aligned_cols=262  Identities=11%  Similarity=0.089  Sum_probs=119.5

Q ss_pred             CCCeEEeccCCCCCCccccceEEEE---CCEEEEEcCCCCCccCCceEEEECC--CCceeEeeeccccccCccccCCccC
Q 010571           12 YDLWVTLPVSGARPSPRYKHAAAVF---DQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLE   86 (507)
Q Consensus        12 ~~~W~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~--t~~W~~~~~~~~~~~~~~~~~~~~~   86 (507)
                      ...|+++..  +....+.-..+..+   .+.-+++|-..        .++...  -.+|.........           .
T Consensus        74 G~~W~q~~~--p~~~~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~~-----------~  132 (398)
T PLN00033         74 SSEWEQVDL--PIDPGVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSAE-----------D  132 (398)
T ss_pred             CCccEEeec--CCCCCCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCccc-----------c
Confidence            457998863  22222344555542   34777777621        233333  3489885421100           0


Q ss_pred             CCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCC
Q 010571           87 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRK  165 (507)
Q Consensus        87 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~  165 (507)
                      ........++...++..|++|-..       .++.=.-.-.+|+.+.....+|..  .+....++ +.+++.|..     
T Consensus       133 ~~~~~~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~-----  198 (398)
T PLN00033        133 EDFNYRFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE-----  198 (398)
T ss_pred             cccccceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEecc-----
Confidence            011112344555578888886321       122222234689988642222322  23344444 467777742     


Q ss_pred             ccCcEEEEEcCCCcEEEeecCC-CCCCC--------------CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEE-ECCCC
Q 010571          166 LLNDVHFLDLETMTWDAVEVTQ-TPPAP--------------RYDHSAALHANRYLIVFGGCSHSIFFNDLHVL-DLQTN  229 (507)
Q Consensus       166 ~~~~~~~~d~~t~~W~~~~~~g-~~p~~--------------r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~-d~~~~  229 (507)
                        ..+++-+-.-.+|+.+.... ..|..              -..+++....++.++++|-.+      .+++- |....
T Consensus       199 --G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~  270 (398)
T PLN00033        199 --GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQP  270 (398)
T ss_pred             --ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCc
Confidence              13444444456898762111 00111              112223334555566666433      23332 22223


Q ss_pred             cEEeeeecCCCCCCCcceEEE-EECCEEEEEeccCCCCCcceEEEEEcCcCe-----eEEeccCCCCCCCCCCCCceEEE
Q 010571          230 EWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVLNMTKLA-----WSILTSVKGRNPLASEGLSVCSA  303 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~-----W~~~~~~~~~~p~~~~~~~~~~~  303 (507)
                      .|..+.    .|.++...++. ..++.++++|...      .++.-+.....     |..++..       ..+.....+
T Consensus       271 ~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~~-------~~~~~l~~v  333 (398)
T PLN00033        271 YWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADIK-------SRGFGILDV  333 (398)
T ss_pred             ceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeecccC-------CCCcceEEE
Confidence            488863    33333333333 3366788776421      23333333333     4443221       112233333


Q ss_pred             EEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCC
Q 010571          304 IIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRP  338 (507)
Q Consensus       304 ~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~  338 (507)
                      ...++..++++|...     -++.-...-..|+..
T Consensus       334 ~~~~d~~~~a~G~~G-----~v~~s~D~G~tW~~~  363 (398)
T PLN00033        334 GYRSKKEAWAAGGSG-----ILLRSTDGGKSWKRD  363 (398)
T ss_pred             EEcCCCcEEEEECCC-----cEEEeCCCCcceeEc
Confidence            444455788878643     344444445566653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	507
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		7e-04

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 17/219 (7%)
Query: 102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 161
           ++ ++GG+  +S  S  V  +D   +  GV  +   + V RG    T +G  + + GG D
Sbjct: 64  RIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 162 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL 221
            SR+  +   + D     W  +   QT      + +  + A+  +   GG       N +
Sbjct: 123 GSRRHTSMERY-DPNIDQWSMLGDMQTAR----EGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 222 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 281
              D  T  W+       + T R+G     ++++ Y+VGG D           N+   +W
Sbjct: 178 EKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 282 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 320
           + +TS      + +    V + ++ G   L A  GY+G 
Sbjct: 235 TTVTS------MTTPRCYVGATVLRGR--LYAIAGYDGN 265

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	507
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-40
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-38
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	8e-34
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-29
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	8e-26
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	7e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	5e-16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	8e-29
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	5e-26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	9e-26
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	6e-28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-25
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-27
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-27
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-10
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	6e-25
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-10
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	4e-24
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	9e-23
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	3e-19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-09
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	6e-24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-10
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	7e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	4e-10
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-06
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-04
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	3e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  154 bits (390), Expect = 1e-40
 Identities = 48/282 (17%), Positives = 97/282 (34%), Gaps = 31/282 (10%)

Query: 94  HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKVPVARGGHSVTLV 150
             +   G  +  +GG      + ++   + +  +   +  +  +S +VPVAR  H+ T +
Sbjct: 391 GDVDVAGNDVFYMGGSNPYRVNEILQ--LSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI 448

Query: 151 G--SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 208
              ++L++ GG     + L+D    D++T  W    + ++    R+ HSA    +  +++
Sbjct: 449 SRNNQLLLIGGRKAPHQGLSDNWIFDMKTREW---SMIKSLSHTRFRHSACSLPDGNVLI 505

Query: 209 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW---YIVGGGDNN 265
            GG +       + + ++    +     K +        AG+  D       I+GGG  +
Sbjct: 506 LGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD 562

Query: 266 NGC----QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-- 319
                        +       I    K ++PL     S    I      L+  GG +   
Sbjct: 563 QTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI--TPRKLLIVGGTSPSG 620

Query: 320 --KYNNEVFV-----MRLKPRDIPRPKIFQSPAAAAAAASVT 354
                N +         L    I R          A  + V+
Sbjct: 621 LFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVS 662

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  147 bits (373), Expect = 2e-38
 Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 42/275 (15%)

Query: 11  PYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSN 67
             D+      S   P  R  H       + +L ++GG     + LSD  +FD+++  WS 
Sbjct: 423 KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWS- 481

Query: 68  LRLETELDADKTEDSGLLEVLP-PMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLE 125
                           +++ L      H         +LILGG    +    ++ + ++ 
Sbjct: 482 ----------------MIKSLSHTRFRHSACSLPDGNVLILGG---VTEGPAMLLY-NVT 521

Query: 126 TNLCGVMETSGKVPVARGGHS---VTLVGSRL-IIFGGEDRSRKLLNDVHFLDLE----T 177
             +   +    +        +      V  +  I+ GG      + +       +    T
Sbjct: 522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT 581

Query: 178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFF---NDLHVLDLQTNEWSQP 234
                ++  Q P   RY         R L++ GG S S  F   N +  LD  +   +  
Sbjct: 582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI 641

Query: 235 EIKGDLVTG----RAGHAGITIDEN-WYIVGGGDN 264
            I   +        AG + ++      +I+GGG  
Sbjct: 642 PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGAT 676

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  134 bits (339), Expect = 8e-34
 Identities = 50/302 (16%), Positives = 102/302 (33%), Gaps = 21/302 (6%)

Query: 65  WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 124
           W +    T+ +  K E    LE       H ++   T             D  I      
Sbjct: 313 WESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINL- 371

Query: 125 ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 184
            T          + P+ R    V + G+ +   GG +  R  +N++  L +     D   
Sbjct: 372 -TVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSIHYDKIDMKN 428

Query: 185 VTQTP---PAPRYDHSA-ALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGD 239
           +  +    P  R  H+   +  N  L++ GG  +     +D  + D++T EWS       
Sbjct: 429 IEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI---KS 485

Query: 240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 299
           L   R  H+  ++ +   ++ GG         ++ N+T+  +  +T  K      S   +
Sbjct: 486 LSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVT-PKDEFFQNSLVSA 542

Query: 300 VCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRD----IPRPKIFQSPAAAAAAASV 353
                   +  ++  GG+  +   +++  + +    +    I   K  Q P      + +
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI 602

Query: 354 TA 355
             
Sbjct: 603 KY 604

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 69.8 bits (170), Expect = 1e-12
 Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 26/173 (15%)

Query: 2   DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFD---QKLYIVGG--SRNGRFLSDVQ 56
                   +  +++  +             A   FD   ++  I+GG             
Sbjct: 512 GPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAI 571

Query: 57  VFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDH-CMVKWGTKLLILGG----HYK 111
           +F   +   +            T    L   L              KLLI+GG       
Sbjct: 572 IFKYDAENATEP---------ITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLF 622

Query: 112 KSSDSMIVRFIDLETN----LCGVMETSGKVPVARGGHSVTLVGS-RLIIFGG 159
             ++S+I   +D  +     +           +   G S+       + I GG
Sbjct: 623 DRTNSIIS--LDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  116 bits (293), Expect = 2e-29
 Identities = 57/301 (18%), Positives = 104/301 (34%), Gaps = 45/301 (14%)

Query: 25  PSPRYKHAAAVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG 83
             PR +      ++ L +VGG       +  V+ +D ++  WS                 
Sbjct: 3   QGPRTRARLGA-NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF---------------- 45

Query: 84  LLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 139
               LP +         V    ++ ++GG+  +S  S +    D   +  GV  +   + 
Sbjct: 46  ----LPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECL-DYTADEDGVWYSVAPMN 100

Query: 140 VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSA 198
           V RG    T +G  + + GG D SR     +   D     W  +          R     
Sbjct: 101 VRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSML----GDMQTAREGAGL 155

Query: 199 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI 258
            +  +  +   GG       N +   D  T  W+       + T R+G     ++++ Y+
Sbjct: 156 VVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMATKRSGAGVALLNDHIYV 211

Query: 259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 318
           VGG D           N+   +W+ +T       + +    V + ++ G   L A  GY+
Sbjct: 212 VGGFDGTAHLSSVEAYNIRTDSWTTVT------SMTTPRCYVGATVLRG--RLYAIAGYD 263

Query: 319 G 319
           G
Sbjct: 264 G 264

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  106 bits (266), Expect = 8e-26
 Identities = 54/286 (18%), Positives = 92/286 (32%), Gaps = 52/286 (18%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRS---LAWSNLR 69
             W  LP   +    R   A+     ++Y++GG      LS V+  D  +     W +  
Sbjct: 41  QEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-- 95

Query: 70  LETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLE 125
                             + PM            G  + + GG       + + R+ D  
Sbjct: 96  ------------------VAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERY-DPN 136

Query: 126 TN---LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA 182
            +   + G M        AR G  + +    +   GG D     LN V   D  T  W  
Sbjct: 137 IDQWSMLGDM------QTAREGAGLVVASGVIYCLGGYDGLNI-LNSVEKYDPHTGHW-- 187

Query: 183 VEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
              T   P    R     AL  N ++ V GG   +   + +   +++T+ W+       +
Sbjct: 188 ---TNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT---VTSM 240

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286
            T R       +    Y + G D N+        +    +W ++TS
Sbjct: 241 TTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTS 286

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 89.3 bits (222), Expect = 7e-20
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 38/182 (20%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
            + R      V    +Y +GG      L+ V+ +D  +  W+N                 
Sbjct: 147 QTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN----------------- 189

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGK 137
              + PM    S   +      + ++GG    +  S +  + ++ T+       M     
Sbjct: 190 ---VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAY-NIRTDSWTTVTSM----- 240

Query: 138 VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 197
               R     T++  RL    G D +  LL+ +   D    +W   EV  +    R D  
Sbjct: 241 -TTPRCYVGATVLRGRLYAIAGYDGN-SLLSSIECYDPIIDSW---EVVTSMGTQRCDAG 295

Query: 198 AA 199
             
Sbjct: 296 VC 297

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 17/184 (9%)

Query: 139 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP--PAPRYDH 196
              R    +      L++ GG    +  ++ V   D +T  W     +  P     R   
Sbjct: 3   QGPRTRARLGANE-VLLVVGGFGSQQSPIDVVEKYDPKTQEW-----SFLPSITRKRRYV 56

Query: 197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 256
           ++    +R + V GG       + +  LD   +E         +   R      T+ +  
Sbjct: 57  ASVSLHDR-IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMI 115

Query: 257 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG 316
           Y+ GG D +         +     WS+L        + +        +  G   +   GG
Sbjct: 116 YVSGGFDGSRRHTSMERYDPNIDQWSMLG------DMQTAREGAGLVVASG--VIYCLGG 167

Query: 317 YNGK 320
           Y+G 
Sbjct: 168 YDGL 171

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  114 bits (288), Expect = 8e-29
 Identities = 55/309 (17%), Positives = 90/309 (29%), Gaps = 56/309 (18%)

Query: 23  ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82
           +   PR  HA  V  + +Y  GG    + LS ++ ++  +  W                 
Sbjct: 11  SGLVPRGSHAPKV-GRLIYTAGG-YFRQSLSYLEAYNPSNGTWLR--------------- 53

Query: 83  GLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFI---DLETN---LCGVM 132
                L  +    S       G  L  +GG       +     +   +  TN    C  M
Sbjct: 54  -----LADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM 108

Query: 133 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PA 191
                  V R    V ++   +   GG        N V   + E   W  V     P   
Sbjct: 109 ------SVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLV----APMLT 157

Query: 192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT 251
            R     A+     L   GG   +   N       + NEW        + T R+G     
Sbjct: 158 RRIGVGVAVLNRL-LYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIRSGAGVCV 213

Query: 252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL 311
           +    Y  GG D  +        ++    W+ +  +          L +   + +G   +
Sbjct: 214 LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KHRRSALGIT--VHQG--RI 265

Query: 312 VAFGGYNGK 320
              GGY+G 
Sbjct: 266 YVLGGYDGH 274

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  107 bits (268), Expect = 5e-26
 Identities = 49/232 (21%), Positives = 76/232 (32%), Gaps = 44/232 (18%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
             PR +    V D  +Y VGGS      + V+ ++     W                   
Sbjct: 109 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH------------------ 150

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGK 137
             ++ PM        +      L  +GG    +  +    +   E N   +   M     
Sbjct: 151 --LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECY-YPERNEWRMITAM----- 202

Query: 138 VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDH 196
               R G  V ++ + +   GG D     LN V   D+ET TW  V     P    R   
Sbjct: 203 -NTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFV----APMKHRRSAL 256

Query: 197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 248
              +H  R + V GG     F + +   D  T+ WS       + +GR+G  
Sbjct: 257 GITVHQGR-IYVLGGYDGHTFLDSVECYDPDTDTWS---EVTRMTSGRSGVG 304

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  106 bits (266), Expect = 9e-26
 Identities = 51/302 (16%), Positives = 86/302 (28%), Gaps = 57/302 (18%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGR----FLSDVQVFDLRSLAWSNL 68
             W+ L        PR   A  V    LY VGG  N        S +  ++  +  WS  
Sbjct: 49  GTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP- 104

Query: 69  RLETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL 124
                                PM    +   +      +  +GG +     + + R+ + 
Sbjct: 105 -------------------CAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERY-EP 144

Query: 125 ETN---LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD 181
           E +   L   M         R G  V ++   L   GG D + + LN       E   W 
Sbjct: 145 ERDEWHLVAPM------LTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEW- 196

Query: 182 AVEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD 239
                        R      +  +  +   GG       N +   D++T  W+       
Sbjct: 197 ----RMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAP 248

Query: 240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLS 299
           +   R+           Y++GG D +         +     WS +T +         G+ 
Sbjct: 249 MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVG 304

Query: 300 VC 301
           V 
Sbjct: 305 VA 306

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  112 bits (282), Expect = 6e-28
 Identities = 46/320 (14%), Positives = 86/320 (26%), Gaps = 63/320 (19%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
             W  +         R   A   +D  +YI+GGS     +  +  +++   +W +     
Sbjct: 34  YSWTDIR---CPFEKRRDAACVFWDNVVYILGGS-QLFPIKRMDCYNVVKDSWYS----- 84

Query: 73  ELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN- 127
                                            K+   GG    +S   +    D  T  
Sbjct: 85  ---------------KLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES 129

Query: 128 --LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED---RSRKLLNDVHFLDLETMTWDA 182
                 M         R  H +      + + GG      S ++LN     D  T TW  
Sbjct: 130 WHTKPSM------LTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW-- 181

Query: 183 VEVTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL 240
              T+  P    R +H         +   GG +     +++   D++ NEW        +
Sbjct: 182 ---TELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM---VSPM 234

Query: 241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV 300
                      +    Y++ G          +  N     W   +       + +  ++ 
Sbjct: 235 PWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANS------KVRAFPVTS 288

Query: 301 CSAIIEGEHHLVAFGGYNGK 320
           C   +      V   G N +
Sbjct: 289 CLICV------VDTCGANEE 302

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  105 bits (265), Expect = 1e-25
 Identities = 46/306 (15%), Positives = 90/306 (29%), Gaps = 60/306 (19%)

Query: 26  SPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85
           S   +      D ++ + GGS+        + F+ +  +W++                  
Sbjct: 1   SMGTRPRRKKHDYRIALFGGSQ----PQSCRYFNPKDYSWTD------------------ 38

Query: 86  EVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKV 138
             +        D   V W   + ILGG          +   ++  +              
Sbjct: 39  --IRCPFEKRRDAACVFWDNVVYILGGSQLFPIKR--MDCYNVVKDSWYSKLGP------ 88

Query: 139 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHS 197
           P  R   +      ++   GG +     L      D  T +W             R  H 
Sbjct: 89  PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK----PSMLTQRCSHG 144

Query: 198 AALHANRYLIVFGGC----SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID 253
                N  + V GG           N   V D  T  W++      ++  R  H  + + 
Sbjct: 145 MVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE---LCPMIEARKNHGLVFVK 200

Query: 254 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVA 313
           +  + VGG +   G       ++    W +++      P+  +G++V  A +     +  
Sbjct: 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS------PMPWKGVTVKCAAVGS--IVYV 252

Query: 314 FGGYNG 319
             G+ G
Sbjct: 253 LAGFQG 258

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 31/143 (21%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
              R  H       K++ VGG      L +V+ +D++   W                   
Sbjct: 188 IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM----------------- 230

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV 140
              + PM            G+ + +L G         I+ + + ET+       + KV  
Sbjct: 231 ---VSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEY-NTETD---KWVANSKVRA 283

Query: 141 ARGGHSVTLVGSRLIIFGGEDRS 163
                 +  V   +   G  + +
Sbjct: 284 FPVTSCLICV---VDTCGANEET 303

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  110 bits (277), Expect = 3e-27
 Identities = 55/284 (19%), Positives = 89/284 (31%), Gaps = 49/284 (17%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
           + W  +      PS R +         ++ VGG      +  V  +D     W++     
Sbjct: 40  ERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS----- 91

Query: 73  ELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN- 127
                          +  M    S          L  +GG    +  S +  + ++++N 
Sbjct: 92  ---------------VANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAY-NIKSNE 135

Query: 128 --LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVE 184
                 M         R    V +VG  L   GG D  SR+ L+ V   +  T  W    
Sbjct: 136 WFHVAPM------NTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEW---- 185

Query: 185 VTQTPP--APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 242
            T        R      +  N  L   GG    +    + V D  TN W Q     D+  
Sbjct: 186 -TYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ---VADMNM 240

Query: 243 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 286
            R       ++   Y+VGG D +         N T   W++++S
Sbjct: 241 CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSS 284

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  109 bits (275), Expect = 5e-27
 Identities = 53/314 (16%), Positives = 94/314 (29%), Gaps = 57/314 (18%)

Query: 26  SPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 85
           S R +    +   KL +V G +  + +  V+ +D +   W                    
Sbjct: 3   SVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQ------------------ 44

Query: 86  EVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LCGVMETSGKV 138
             +  +        MV     +  +GG         +  + D   +       M      
Sbjct: 45  --VAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSY-DPVKDQWTSVANM------ 95

Query: 139 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHS 197
              R      ++   L   GG D S   L+ V   ++++  W  V     P    R    
Sbjct: 96  RDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHV----APMNTRRSSVG 150

Query: 198 AALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 255
             +     L   GG   +     + +   +  TNEW+      ++ T R+G     ++  
Sbjct: 151 VGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRSGAGVGVLNNL 206

Query: 256 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK-GRNPLASEGLSVCSAIIEGEHHLVAF 314
            Y VGG D     +   V + T  AW  +  +   R        +     + G   L   
Sbjct: 207 LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR-------NAGVCAVNG--LLYVV 257

Query: 315 GGYNG-KYNNEVFV 327
           GG +G      V  
Sbjct: 258 GGDDGSCNLASVEY 271

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 38/150 (25%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
           + W  +       + R      V +  LY VGG         V+V+D  + AW       
Sbjct: 183 NEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWR------ 233

Query: 73  ELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN- 127
                          +  M     +  +      L ++GG     + + +  + +  T+ 
Sbjct: 234 --------------QVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYY-NPTTDK 278

Query: 128 ---LCGVMETSGKVPVARGGHSVTLVGSRL 154
              +   M         R    VT++  RL
Sbjct: 279 WTVVSSCM------STGRSYAGVTVIDKRL 302

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  104 bits (261), Expect = 6e-25
 Identities = 43/332 (12%), Positives = 90/332 (27%), Gaps = 71/332 (21%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGR------FLSDVQVFDLRSLAWS 66
           +      +S     P+   +    + ++++ GG             +    FD     W 
Sbjct: 23  NECYCASLS--SQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80

Query: 67  NLRLETELDADKTEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMI--VR 120
            +                    PP+        + +    + ++GG   K  +  +  V 
Sbjct: 81  GM--------------------PPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVM 120

Query: 121 FIDLETN---LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 177
             D  +        +      P    GH+V      + + GG+   RK LN +   D + 
Sbjct: 121 CYDRLSFKWGESDPL------PYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKK 174

Query: 178 MTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 236
             W  +     P    R    A +H +  +IV  G + +   +   V  +  N+W+    
Sbjct: 175 FEWKEL----APMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP--- 226

Query: 237 KGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI---------VLNMTKLAWSILTSV 287
                  R+  + +++    Y +GG          +           N  +  W  +   
Sbjct: 227 FEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL-- 284

Query: 288 KGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 319
                  +               L        
Sbjct: 285 ----REIAYAAGATFL----PVRLNVLRLTKM 308

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 21/149 (14%), Positives = 40/149 (26%), Gaps = 27/149 (18%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
            + R    A V D ++ +  G  +    S  +V+ +    W+                  
Sbjct: 184 QTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA------------------ 225

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET---SGK 137
                      S   +V     L  +GG     ++S  +   +L        E     G 
Sbjct: 226 --PFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283

Query: 138 VPVARGGHSVTLVGSRLIIFGGEDRSRKL 166
           +         T +  RL +      +  L
Sbjct: 284 LREIAYAAGATFLPVRLNVLRLTKMAENL 312

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  102 bits (256), Expect = 4e-24
 Identities = 41/282 (14%), Positives = 69/282 (24%), Gaps = 60/282 (21%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
           + WV L      P     H   V + K Y+ GG     F    +  +      +      
Sbjct: 96  NSWVKLM--SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDST------ 147

Query: 73  ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN---LC 129
                          +  ++ H                    +  ++ F D  T      
Sbjct: 148 --------------AIDKINAHYFD---------KKAEDYFFNKFLLSF-DPSTQQWSYA 183

Query: 130 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP 189
           G             G +V   G +  +  GE +     + V  LD         ++    
Sbjct: 184 GESPWY-----GTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVS 238

Query: 190 PAPRYDHSAALHANRYLIVFGGCSHS-----------------IFFNDLHVLDLQTNEWS 232
                    A  +N  LI  GG                            +      +W 
Sbjct: 239 SPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD 298

Query: 233 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL 274
           +    G+L  GRA    +  + +  I+GG           VL
Sbjct: 299 K---SGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL 337

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 98.9 bits (246), Expect = 9e-23
 Identities = 50/329 (15%), Positives = 85/329 (25%), Gaps = 60/329 (18%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
           P P      A+ +  +YI  GS    +         +   W+ L                
Sbjct: 7   PVPFKSGTGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTAL---AAFPG-------- 53

Query: 85  LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIV-----RFIDLETN----LCGVMETS 135
                P            L + GG  K S     V     ++ + +TN    L       
Sbjct: 54  ----GPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKY-NPKTNSWVKLMSHA--- 105

Query: 136 GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 195
              P+   GH   +   +  + GG +++         L+       A+       A  +D
Sbjct: 106 ---PMGMAGHVTFVHNGKAYVTGGVNQNI-FNGYFEDLNEAGKDSTAI---DKINAHYFD 158

Query: 196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL-VTGRAGHAGITIDE 254
                                F   L   D  T +WS     G+    G AG A +   +
Sbjct: 159 K--------------KAEDYFFNKFLLSFDPSTQQWSY---AGESPWYGTAGAAVVNKGD 201

Query: 255 NWYIVGGGDNNNG-CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVA 313
             +++ G             L+ T             +P    G     +       L+ 
Sbjct: 202 KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS----NDSLIF 257

Query: 314 FGGYNGKYNNEVFVMRLKPRDIPRPKIFQ 342
            GG   K + E +            K + 
Sbjct: 258 AGGAGFKGSRENYQNGKNYAHEGLKKSYS 286

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 88.1 bits (218), Expect = 3e-19
 Identities = 44/327 (13%), Positives = 83/327 (25%), Gaps = 58/327 (17%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNG-----RFLSDVQVFDLRSLAWSNLRLETELDADKT 79
             PR +  +A  D  LY+ GG         +  +DV  ++ ++ +W  L           
Sbjct: 53  GGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAP------ 106

Query: 80  EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 139
                      M+ H       K  + GG  +   +                        
Sbjct: 107 ---------MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDL------------------ 139

Query: 140 VARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAA 199
              G  S  +       F  +         +   D  T  W      ++P       +  
Sbjct: 140 NEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQW--SYAGESPWYGTAGAAVV 197

Query: 200 LHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGDLV-TGRAGHAGITIDENWY 257
                   +  G     +  + +  LD   N     ++       G AG      +++  
Sbjct: 198 NK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLI 256

Query: 258 IVG-----GGDNNNGCQETIVLNMTKLAWSILTSVKGRN------PLASEGLSVCSAIIE 306
             G     G   N    +       K ++S    +           L+       S    
Sbjct: 257 FAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN 316

Query: 307 GEHHLVAFGGYN--GKYNNEVFVMRLK 331
               L+  GG    GK   +  ++ +K
Sbjct: 317 NS--LLIIGGETAGGKAVTDSVLITVK 341

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 22/179 (12%), Positives = 42/179 (23%), Gaps = 26/179 (14%)

Query: 26  SPRYKHAAAVFDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
                 A      K +++ G ++ G     V   D         +L      D       
Sbjct: 189 YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD------- 241

Query: 85  LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVR--------FIDLETNLCGVMETS- 135
                 ++          L+  GG   K S                   +    +     
Sbjct: 242 -----GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK 296

Query: 136 ----GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP 190
               G++   R         + L+I GGE    K + D   + ++        +     
Sbjct: 297 WDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHHH 355

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  101 bits (253), Expect = 6e-24
 Identities = 45/273 (16%), Positives = 88/273 (32%), Gaps = 51/273 (18%)

Query: 25  PSPRYKHAAAVFDQKLYIVGG------SRNGRFLSDVQVFDLRSLAWSNLRLETELDADK 78
             PR   +      ++Y+VGG      +++    S     D  S  W  L          
Sbjct: 44  QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL---------- 93

Query: 79  TEDSGLLEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSM-IV-RFIDLETN---LC 129
                     PP+        + +   K+ ++ G   ++  S+  V  + D         
Sbjct: 94  ----------PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY-DPVAAKWSEV 142

Query: 130 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP 189
             +      P+   GH+V      +   GG+   +K  N V   + +   W  +     P
Sbjct: 143 KNL------PIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL----AP 192

Query: 190 -PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 248
              PR     A+H    +++ GG +       +   DL+TN+W       +    R+  +
Sbjct: 193 MKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEV---MTEFPQERSSIS 248

Query: 249 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 281
            +++  + Y +GG        +          W
Sbjct: 249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIW 281

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 45/245 (18%), Positives = 72/245 (29%), Gaps = 60/245 (24%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGS--RNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82
           PS R        D K+Y+V G   +    L  V  +D  +  WS                
Sbjct: 97  PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS---------------- 140

Query: 83  GLLEVLPPM----SDHCMVKWGTKLLILGGHY--KKSSDSMIVRFIDLETN---LCGVME 133
                +  +      H ++     +  LGG    KK ++ +   + + +         M 
Sbjct: 141 ----EVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVF-IY-NPKKGDWKDLAPM- 193

Query: 134 TSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAP 192
                   R    V +   +++I GG      L   V   DL+T  W+ +    T  P  
Sbjct: 194 -----KTPRSMFGVAIHKGKIVIAGGVTEDG-LSASVEAFDLKTNKWEVM----TEFPQE 243

Query: 193 RYDHSAALHANRYLIVFGGCSH---------SIFFNDLHVLDLQTNEWSQPEIKGDLVTG 243
           R   S    A   L   GG +              ND+   +    EW+       L   
Sbjct: 244 RSSISLVSLAGS-LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEI 297

Query: 244 RAGHA 248
           R    
Sbjct: 298 RYASG 302

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 27/140 (19%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 84
            +PR     A+   K+ I GG       + V+ FDL++  W                   
Sbjct: 194 KTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWE------------------ 235

Query: 85  LEVLPPM----SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET---SGK 137
             V+       S   +V     L  +GG      +S      ++        +    +G 
Sbjct: 236 --VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293

Query: 138 VPVARGGHSVTLVGSRLIIF 157
           +   R     + + +RL +F
Sbjct: 294 LKEIRYASGASCLATRLNLF 313

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 28/132 (21%)

Query: 206 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 265
           +++    +   +       D   NE             R   + +T     Y+VGG   +
Sbjct: 18  ILLVNDTAAVAY-------DPMENECYLT--ALAEQIPRNHSSIVTQQNQVYVVGGLYVD 68

Query: 266 NGCQETIV------LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 319
              ++  +      L+     W  L       PL S         ++    +    G + 
Sbjct: 69  EENKDQPLQSYFFQLDNVSSEWVGLP------PLPSARCLFGLGEVDD--KIYVVAGKDL 120

Query: 320 KYNN-----EVF 326
           +          +
Sbjct: 121 QTEASLDSVLCY 132

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 61.1 bits (147), Expect = 4e-10
 Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 36/269 (13%)

Query: 25  PSPRYKHAAAVF-DQKLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 82
              R   ++A   D +++ +GGS +G  F  + +V+   S  W++L        +    +
Sbjct: 284 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL---PNAKVNPMLTA 340

Query: 83  GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR 142
               +    +   +  W    +   G     S +M   +    T+  G ++++GK    R
Sbjct: 341 DKQGLYRSDNHAWLFGWKKGSVFQAG----PSTAMNWYY----TSGSGDVKSAGKRQSNR 392

Query: 143 GGHSVTLVGS---------RLIIFGG--EDRSRKLLNDVHFLDLETMTWDAVEVTQTP-- 189
           G     + G+         +++ FGG  + +      + H + L         V  +   
Sbjct: 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL 452

Query: 190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVL------DLQTNEWSQPEIKGDLVTG 243
              R  H++ +  +    + GG    I F D   +        + + + +   +      
Sbjct: 453 YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPNSIV 509

Query: 244 RAGHAGITIDEN-WYIVGGGDNNNGCQET 271
           R  H+   +  +     GGG     C   
Sbjct: 510 RVYHSISLLLPDGRVFNGGGGLCGDCTTN 538

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 395 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 454
           ++    +  S++++ + N   +E+   + ++ S+  K+   +Q  L AER         I
Sbjct: 33  RKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI 92

Query: 455 AELQKMLESSQTIENEVQILRQQKSAFEQEMERA 488
            +LQ  +    +++ EV+ L+      E E + A
Sbjct: 93  GDLQARI---TSLQEEVKHLKHNLEKVEGERKEA 123

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 33/90 (36%)

Query: 401 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 460
           L+  L E         +    +  +H+E+SK +S ++      + R   LE   ++  K 
Sbjct: 11  LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKD 70

Query: 461 LESSQTIENEVQILRQQKSAFEQEMERATS 490
               Q I    +  R   S    +++   +
Sbjct: 71  YYQLQAILEAERRDRGHDSEMIGDLQARIT 100

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 17/105 (16%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           ++++     ++  K   +    +++      R      +    +L   ++S+Q ++   +
Sbjct: 51  RELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLK 110

Query: 445 SRCFKLEAQIAELQKMLESSQTIENEVQI-LRQQKSAFEQEMERA 488
               K+E +  E Q ML  S+  +N ++I L  +  + +Q +E+ 
Sbjct: 111 HNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQE 155

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 13/144 (9%)

Query: 360  AKSEKLDIPKTLSSKFAGIGNDLSEK--DVRTDIDAIKEDKRVLELSLTEVRTENSRFRE 417
             + EK      L +K   + ++L  +          +++ KR LE   +++  + +  + 
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081

Query: 418  KIDEVNSTHSELSKELSSVQGQLVAERSRCFK-------LEAQIAELQKMLESSQT---- 466
            +I E+ +  ++  +EL +   +L  E S+          LE+ I++LQ+ LES +     
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141

Query: 467  IENEVQILRQQKSAFEQEMERATS 490
             E + + L ++  A + E+E    
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 395  KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC------- 447
            + +K   +  + ++  +     ++ +++      L + +S +   L  E  +        
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK 1034

Query: 448  FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 490
             K E+ I+EL+  L+     E   Q L + K   E E      
Sbjct: 1035 NKHESMISELEVRLKKE---EKSRQELEKIKRKLEGESSDLHE 1074

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 385  KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ----- 439
             D+   I  ++     L+  L +   E      ++++  S  +   K++  ++       
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129

Query: 440  --LVAERSRCFKLEAQ-------IAELQKMLESSQTIENEVQILRQQKSAFEQE 484
              L +E++   K E Q       +  L+  LE +       Q LR      + +
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
           +D     + +     ++E  L            K  E+      ++  L S++ Q     
Sbjct: 156 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYS 215

Query: 445 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEMERA 488
            +  K E +I  L   L+ ++T     E  V  L +     E E+   
Sbjct: 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 263

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 450
           +DAIK+  ++L+L                        +L  EL S+Q +L A      K 
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 451 EAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERA 488
              + + Q+ LE ++      E +V  L ++   FE+E++RA
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 14/110 (12%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
             ++  + A +++      +L + + +     +K  +  +  + L++ +   + +L   +
Sbjct: 44  VSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQ 103

Query: 445 SRCFKLEAQIAELQKMLESSQT----IENEVQILRQQKSAFEQEMERATS 490
            R      ++ E +K  + S+     IE+  Q   ++    E +++ A  
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKH 153

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 385  KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAER 444
            K     ++  K+    LE  + +        + KIDE N  +  L +++++++     E 
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQ-------LQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 445  SRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 490
                KL + +  L+   E ++   N V  L+++ +   +E+ +  +
Sbjct: 963  E---KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	507
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.65
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.3
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.25
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.96
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.85
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.83
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.83
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	97.79
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.73
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.72
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.62
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	97.57
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.55
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.46
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	97.44
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.43
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.4
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.39
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	97.35
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.35
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.33
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.33
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.33
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.32
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.24
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.22
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	97.21
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.21
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.14
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	97.14
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.12
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.09
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	97.06
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.05
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	97.03
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.02
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.01
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.99
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.99
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.9
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	96.89
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.89
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.87
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.84
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	96.72
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.72
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	96.68
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.67
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	96.67
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	96.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.6
3jro_A	753	Fusion protein of protein transport protein SEC13	96.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.51
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.48
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.46
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	96.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	96.44
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	96.42
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.42
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.39
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	96.37
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.35
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.33
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	96.29
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.27
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.25
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.24
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	96.16
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.15
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	96.12
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.07
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.06
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	96.03
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	95.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	95.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.88
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.86
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	95.84
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.75
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	95.75
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.74
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.74
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	95.73
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.69
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.68
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.67
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	95.66
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	95.65
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.56
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	95.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.53
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.52
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.52
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.51
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.46
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.35
3jro_A	753	Fusion protein of protein transport protein SEC13	95.34
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.33
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.3
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.28
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.27
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.26
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.23
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.18
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.17
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	95.16
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	95.15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.14
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.12
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.09
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	95.06
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	95.03
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	95.02
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	95.02
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.01
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	95.0
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	94.93
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	94.9
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	94.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	94.85
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.85
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	94.84
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	94.84
3ott_A	758	Two-component system sensor histidine kinase; beta	94.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	94.83
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	94.8
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.79
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	94.73
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	94.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	94.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	94.54
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.49
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.44
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	94.42
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.4
2pm7_B	297	Protein transport protein SEC13, protein transport	94.39
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	94.39
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.39
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	94.34
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.32
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	94.29
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	94.26
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	94.25
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	94.23
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	94.22
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	94.2
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.17
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	94.11
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	94.08
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.06
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	93.85
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	93.83
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.77
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	93.56
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	93.56
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	93.51
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	93.25
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	93.25
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	93.24
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	93.12
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	92.98
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	92.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	92.82
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	92.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	92.81
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	92.75
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	92.74
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	92.67
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	92.65
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	92.64
3ott_A	758	Two-component system sensor histidine kinase; beta	92.59
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	92.53
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	92.28
2pm7_B	297	Protein transport protein SEC13, protein transport	92.22
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.16
1k32_A	1045	Tricorn protease; protein degradation, substrate g	91.95
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	91.93
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	91.9
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	91.88
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	91.85
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	91.84
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.76
1k32_A	1045	Tricorn protease; protein degradation, substrate g	91.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	91.58
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	91.57
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	91.52
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	91.51
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	91.37
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	91.35
2ece_A	462	462AA long hypothetical selenium-binding protein;	91.35
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	91.28
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	91.22
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	91.22
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	91.1
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	90.93
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	90.85
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	90.63
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	90.61
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.59
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.49
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	90.44
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	90.31
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	90.28
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	90.18
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	90.17
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	89.99
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	89.98
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.88
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	89.84
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	89.76
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	89.58
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	89.49
3lay_A	175	Zinc resistance-associated protein; salmonella typ	89.47
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	89.43
3bas_A	89	Myosin heavy chain, striated muscle/general contro	89.24
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	89.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	89.09
3ibp_A	302	Chromosome partition protein MUKB; structural main	88.88
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	88.84
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	88.81
3vp9_A	92	General transcriptional corepressor TUP1; four hel	88.71
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.6
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	88.53
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	88.25
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	88.13
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	87.86
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	87.86
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	87.63
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	87.61
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	87.58
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	87.53
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	87.52
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	87.42
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	87.08
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	86.9
3ghg_B	461	Fibrinogen beta chain; triple-stranded coiled coil	86.78
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	86.73
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	86.29
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	86.28
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	86.16
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	86.1
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	86.05
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	86.0
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	85.9
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	85.9
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	85.55
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	85.47
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	85.42
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	85.4
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	85.35
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	85.22
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	85.12
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	84.47
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	84.4
3ni0_A	99	Bone marrow stromal antigen 2; coiled-coil, antivi	84.12
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	83.97
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	83.96
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	83.84
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	83.48
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	83.47
1uix_A	71	RHO-associated kinase; coiled-coil, transferase; H	83.37
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	83.33
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	83.25
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	83.06
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	82.72
1t3j_A	96	Mitofusin 1; coiled coil antiparallel, dimer, memb	82.71
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	82.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	82.56
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	82.49
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	82.4
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	82.35
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.34
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	82.28
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	82.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	82.15
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	81.81
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	81.56
2k48_A	107	Nucleoprotein; viral protein; NMR {Andes virus}	81.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	80.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	80.78
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	80.52
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	80.41

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=2.4e-45  Score=355.56  Aligned_cols=289  Identities=19%  Similarity=0.251  Sum_probs=240.6

Q ss_pred             CCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECC
Q 010571           22 GARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT  101 (507)
Q Consensus        22 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~  101 (507)
                      ++.|.+|..|+++.+++.||+|||. +...++++++||+.+++|..++.+                |.+|.+|+++.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~   71 (308)
T 1zgk_A            9 HSSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGG   71 (308)
T ss_dssp             ------------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETT
T ss_pred             ccCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCC----------------CcccccceEEEECC
Confidence            3568899999999999999999998 566788999999999999998654                45899999999999


Q ss_pred             EEEEEcccC---CCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          102 KLLILGGHY---KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       102 ~iyv~GG~~---~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      +||++||..   ......+++++||+.+++|+.++   ++|.+|..|+++.++++||++||.+... ..+++++||+.++
T Consensus        72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~  147 (308)
T 1zgk_A           72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERD  147 (308)
T ss_dssp             EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTT
T ss_pred             EEEEECCCcCCCCCCeecceEEEECCCCCeEeECC---CCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCC
Confidence            999999984   22234678999999999999997   8999999999999999999999987543 5789999999999


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEE
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      +|+.+.   ++|.+|..|+++++ +++|||+||.+....++++++||+.+++|+.+   .++|.+|..|++++++++|||
T Consensus       148 ~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv  220 (308)
T 1zgk_A          148 EWHLVA---PMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNCIYA  220 (308)
T ss_dssp             EEEECC---CCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEE
T ss_pred             eEeECC---CCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC---CCCCCccccceEEEECCEEEE
Confidence            999997   67889999999988 56799999998777789999999999999997   568899999999999999999


Q ss_pred             EeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCC
Q 010571          259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPR  337 (507)
Q Consensus       259 ~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~  337 (507)
                      +||.+.....+++++||+.+++|+.++.+    |.+|.+++++  +++  +.|||+||.++. ..+++++||+.++.|..
T Consensus       221 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----p~~r~~~~~~--~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          221 AGGYDGQDQLNSVERYDVETETWTFVAPM----KHRRSALGIT--VHQ--GRIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             ECCBCSSSBCCCEEEEETTTTEEEECCCC----SSCCBSCEEE--EET--TEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             EeCCCCCCccceEEEEeCCCCcEEECCCC----CCCccceEEE--EEC--CEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            99988776688999999999999999866    3455555443  444  489999998754 57899999999999999


Q ss_pred             CcccCChhh
Q 010571          338 PKIFQSPAA  346 (507)
Q Consensus       338 ~~~~~~~~~  346 (507)
                      ...++.++.
T Consensus       293 ~~~~p~~r~  301 (308)
T 1zgk_A          293 VTRMTSGRS  301 (308)
T ss_dssp             EEECSSCCB
T ss_pred             cCCCCCCcc
Confidence            877776654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=6.6e-44  Score=345.18  Aligned_cols=267  Identities=15%  Similarity=0.194  Sum_probs=239.0

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      +++|+||+.+++|..++   .+|.+|.+|+++++++.||++||.. ....+++++||+.+++|..++.+           
T Consensus        24 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~-----------   88 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGP-----------   88 (306)
T ss_dssp             TSEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECC-----------
T ss_pred             ceEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCC-----------
Confidence            57899999999999998   7899999999999999999999988 66789999999999999998765           


Q ss_pred             CccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC
Q 010571           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~  162 (507)
                           |.+|.+|++++++++||++||........+++++||+.+++|+.++   ++|.+|.+|+++.++++||++||.+.
T Consensus        89 -----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~  160 (306)
T 3ii7_A           89 -----PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVCGGSLG  160 (306)
T ss_dssp             -----SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEES
T ss_pred             -----CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEECCCCC
Confidence                 4589999999999999999998755556789999999999999997   89999999999999999999999866


Q ss_pred             CCC---ccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCC
Q 010571          163 SRK---LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  239 (507)
Q Consensus       163 ~~~---~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  239 (507)
                      ...   ..+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||.+....++++++||+.+++|+.+   ++
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~---~~  233 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV---SP  233 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC---CC
T ss_pred             CCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC---CC
Confidence            543   3889999999999999997   68889999999998 55699999998777789999999999999997   57


Q ss_pred             CCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEE
Q 010571          240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA  303 (507)
Q Consensus       240 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~  303 (507)
                      +|.+|..|++++++++|||+||.++....+++++||+.+++|+.++.++    .++.+++++.+
T Consensus       234 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~~  293 (306)
T 3ii7_A          234 MPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVR----AFPVTSCLICV  293 (306)
T ss_dssp             CSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEE----CCSCTTCEEEE
T ss_pred             CCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcc----cccceeEEEEE
Confidence            8999999999999999999999887777889999999999999998774    45666665543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=342.62  Aligned_cols=265  Identities=19%  Similarity=0.273  Sum_probs=235.6

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      +++|+||+.++.|..++   .+|.+|.+|+++++++.||++||..+....+++++||+.+++|..++.++          
T Consensus        30 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p----------   96 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMR----------   96 (302)
T ss_dssp             CCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCS----------
T ss_pred             CcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCC----------
Confidence            57899999999999997   79999999999999999999999887778899999999999999998654          


Q ss_pred             CccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC
Q 010571           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR  162 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~  162 (507)
                            .+|.+|+++.++++||++||..... ..+++++||+.+++|+.++   ++|.+|.+|+++.++++||++||.+.
T Consensus        97 ------~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~  166 (302)
T 2xn4_A           97 ------DRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDV  166 (302)
T ss_dssp             ------SCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEET
T ss_pred             ------ccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCEEEEEeCCCC
Confidence                  4899999999999999999987644 3789999999999999997   89999999999999999999999866


Q ss_pred             CC-CccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCC
Q 010571          163 SR-KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV  241 (507)
Q Consensus       163 ~~-~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p  241 (507)
                      .. ...+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||.++....+++++||+.+++|+.+   .++|
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~~  239 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV---ADMN  239 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE---CCCS
T ss_pred             CCCccccEEEEEeCCCCcEEECC---CCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeC---CCCC
Confidence            54 35789999999999999996   67889999999888 55699999998777789999999999999997   5688


Q ss_pred             CCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEec-cCCCCCCCCCCCCceE
Q 010571          242 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT-SVKGRNPLASEGLSVC  301 (507)
Q Consensus       242 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~-~~~~~~p~~~~~~~~~  301 (507)
                      .+|..|++++++++|||+||.+.....+++++||+.+++|+.++ .+    |.+|.+++++
T Consensus       240 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~----~~~r~~~~~~  296 (302)
T 2xn4_A          240 MCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCM----STGRSYAGVT  296 (302)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCC----SSCCBSCEEE
T ss_pred             CccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCccc----CcccccceEE
Confidence            89999999999999999999877666789999999999999986 44    4455555443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=1.1e-43  Score=343.79  Aligned_cols=264  Identities=18%  Similarity=0.234  Sum_probs=236.1

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCC----CCCccCCceEEEECCCCceeEeeeccccccCc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGS----RNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~----~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~   78 (507)
                      +++|+||+.++.|..++   .+|.+|.+|+++++++.||++||.    .+....+++++||+.+++|..++.++      
T Consensus        39 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p------  109 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS------  109 (308)
T ss_dssp             CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS------
T ss_pred             ceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCC------
Confidence            57899999999999997   799999999999999999999998    55667889999999999999987654      


Q ss_pred             cccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEc
Q 010571           79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFG  158 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~G  158 (507)
                                .+|.+|+++.++++||++||..... ..+++++||+.+++|+.++   ++|.+|.+|+++.++++||++|
T Consensus       110 ----------~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~G  175 (308)
T 1zgk_A          110 ----------VPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVG  175 (308)
T ss_dssp             ----------SCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEC
T ss_pred             ----------cCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECC---CCCccccceEEEEECCEEEEEe
Confidence                      4899999999999999999987643 3678999999999999997   8999999999999999999999


Q ss_pred             CcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecC
Q 010571          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  238 (507)
Q Consensus       159 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  238 (507)
                      |.+.... .+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||.+....++++++||+.+++|+.+   .
T Consensus       176 G~~~~~~-~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~---~  247 (308)
T 1zgk_A          176 GFDGTNR-LNSAECYYPERNEWRMIT---AMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFV---A  247 (308)
T ss_dssp             CBCSSCB-CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC---C
T ss_pred             CCCCCCc-CceEEEEeCCCCeEeeCC---CCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC---C
Confidence            9976653 889999999999999986   67889999999988 56699999998877889999999999999997   5


Q ss_pred             CCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceE
Q 010571          239 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC  301 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~  301 (507)
                      ++|.+|..|++++++++|||+||.+.....+++++||+.+++|+.++.+    |.+|.+++++
T Consensus       248 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----p~~r~~~~~~  306 (308)
T 1zgk_A          248 PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVGVA  306 (308)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC----SSCCBSCEEE
T ss_pred             CCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCC----CCCcccceeE
Confidence            7889999999999999999999988776788999999999999999877    4455565443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=7.1e-43  Score=337.11  Aligned_cols=264  Identities=19%  Similarity=0.298  Sum_probs=236.3

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc---eeEeeeccccccCcc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA---WSNLRLETELDADKT   79 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~---W~~~~~~~~~~~~~~   79 (507)
                      +++|+||+.++.|..++   .+|.+|.+|+++++++.||++||..+....+++++||+.+++   |..++.+        
T Consensus        31 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~--------   99 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM--------   99 (301)
T ss_dssp             CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC--------
T ss_pred             eEEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC--------
Confidence            57899999999999998   689999999999999999999998877788999999999999   9998755        


Q ss_pred             ccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcC
Q 010571           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG  159 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG  159 (507)
                              |.+|..|+++.++++||++||...... .+++++||+.+++|+.++   ++|.+|.+|+++.++++||++||
T Consensus       100 --------p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG  167 (301)
T 2vpj_A          100 --------NVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGG  167 (301)
T ss_dssp             --------SSCCBSCEEEEETTEEEEECCBCSSCB-CCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEETTEEEEECC
T ss_pred             --------CCCccceeEEEECCEEEEEcccCCCcc-cceEEEEcCCCCeEEECC---CCCCCcccceEEEECCEEEEECC
Confidence                    448999999999999999999886543 789999999999999997   78999999999999999999999


Q ss_pred             cCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCC
Q 010571          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  239 (507)
Q Consensus       160 ~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  239 (507)
                      .+... ..+++++||+.+++|+.+.   ++|.+|..|+++.+ +++|||+||.+.....+++++||+.+++|+.+   +.
T Consensus       168 ~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~  239 (301)
T 2vpj_A          168 YDGLN-ILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV---TS  239 (301)
T ss_dssp             BCSSC-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE---CC
T ss_pred             CCCCc-ccceEEEEeCCCCcEEeCC---CCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC---CC
Confidence            87654 6889999999999999996   67889999999988 55699999998777789999999999999997   56


Q ss_pred             CCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceE
Q 010571          240 LVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC  301 (507)
Q Consensus       240 ~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~  301 (507)
                      +|.+|..|++++++++|||+||.+.....+++++||+.+++|+.++.++    .+|.+++++
T Consensus       240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~----~~r~~~~~~  297 (301)
T 2vpj_A          240 MTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG----TQRCDAGVC  297 (301)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEE----EEEESCEEE
T ss_pred             CCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCC----cccccceEE
Confidence            8999999999999999999999877766789999999999999998773    455555443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=3.2e-43  Score=340.37  Aligned_cols=273  Identities=15%  Similarity=0.270  Sum_probs=236.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      .+.||+|||...   .+++++||+.+++|..++.+                |.+|.+|+++.++++||++||..  ....
T Consensus        11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~--~~~~   69 (306)
T 3ii7_A           11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCP----------------FEKRRDAACVFWDNVVYILGGSQ--LFPI   69 (306)
T ss_dssp             CCEEEEEECCSS---TTSEEEEETTTTEEEECCCC----------------SCCCBSCEEEEETTEEEEECCBS--SSBC
T ss_pred             cceEEEEeCCCC---CceEEEecCCCCCEecCCCC----------------CcccceeEEEEECCEEEEEeCCC--CCCc
Confidence            488999999765   78999999999999998755                44899999999999999999988  3457


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~  196 (507)
                      +++++||+.+++|..++   ++|.+|.+|+++.++++||++||.+......+++++||+.+++|+.+.   ++|.+|..|
T Consensus        70 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~  143 (306)
T 3ii7_A           70 KRMDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP---SMLTQRCSH  143 (306)
T ss_dssp             CEEEEEETTTTEEEEEE---CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC---CCSSCCBSC
T ss_pred             ceEEEEeCCCCeEEECC---CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC---CCcCCccee
Confidence            89999999999999997   899999999999999999999999755567899999999999999996   688899999


Q ss_pred             eEEEEcCcEEEEEeCCCCCcC----CCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEE
Q 010571          197 SAALHANRYLIVFGGCSHSIF----FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       197 ~~~~~~~~~l~i~GG~~~~~~----~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~  272 (507)
                      +++.+ +++|||+||......    ++++++||+.+++|+.+   .++|.+|..|++++++++|||+||.+.....++++
T Consensus       144 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~  219 (306)
T 3ii7_A          144 GMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL---CPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVE  219 (306)
T ss_dssp             EEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEE
T ss_pred             EEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC---CCccchhhcceEEEECCEEEEEeCCCCCCCCceEE
Confidence            99988 556999999876655    89999999999999997   56899999999999999999999987766678999


Q ss_pred             EEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCCCcccCChhhhh
Q 010571          273 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAAA  348 (507)
Q Consensus       273 ~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~~~~~~~~~~~~  348 (507)
                      +||+.+++|+.++.+    |.++.+++++  +++  +.|||+||.++. ..++++.||+.++.|.....++.++...
T Consensus       220 ~yd~~~~~W~~~~~~----p~~r~~~~~~--~~~--~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~  288 (306)
T 3ii7_A          220 YYDIKLNEWKMVSPM----PWKGVTVKCA--AVG--SIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTS  288 (306)
T ss_dssp             EEETTTTEEEECCCC----SCCBSCCEEE--EET--TEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTT
T ss_pred             EeeCCCCcEEECCCC----CCCccceeEE--EEC--CEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccccccee
Confidence            999999999999766    3455555444  444  489999998754 6789999999999999987776665433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1e-43  Score=345.21  Aligned_cols=276  Identities=15%  Similarity=0.196  Sum_probs=234.5

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCC-----C-CccCCceEEEECCCCceeEeeecccccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSR-----N-GRFLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-----~-~~~~~~~~~~d~~t~~W~~~~~~~~~~~   76 (507)
                      +++|+|||.+++|...+.  +.|.+|.+|+++++++.||++||..     . ....+++++||+.+++|..++.++    
T Consensus        13 ~~~~~yd~~~~~W~~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p----   86 (315)
T 4asc_A           13 EGAVAYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLP----   86 (315)
T ss_dssp             TEEEEEETTTTEEEEEEC--CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBS----
T ss_pred             CceEEECCCCCeEecCCC--CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCC----
Confidence            578999999999987432  3477999999999999999999952     1 233456999999999999987654    


Q ss_pred             CccccCCccCCCCCccceeeEEECCEEEEEcccCC--CCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEE
Q 010571           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK--KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRL  154 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l  154 (507)
                                  .+|.+|+++.++++||++||...  .....+++++||+.+++|+.++   ++|.+|.+|+++.++++|
T Consensus        87 ------------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i  151 (315)
T 4asc_A           87 ------------SPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLV  151 (315)
T ss_dssp             ------------SCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEE
T ss_pred             ------------cchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEEECCEE
Confidence                        48999999999999999999763  3445788999999999999997   899999999999999999


Q ss_pred             EEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          155 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       155 ~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      |++||.+......+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||.+....++++++||+.+++|+.+
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  227 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF  227 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence            999999666667899999999999999987   67889999999988 55699999998877889999999999999997


Q ss_pred             eecCCCCCCCcceEEEEECCEEEEEeccCCC---------CCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEE
Q 010571          235 EIKGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII  305 (507)
Q Consensus       235 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~  305 (507)
                         +++|.+|..|++++++++|||+||.+..         ...+++++||+.+++|+.+.      |.+|.+++++.+  
T Consensus       228 ---~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~------~~~r~~~~~~~~--  296 (315)
T 4asc_A          228 ---EAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL------REIAYAAGATFL--  296 (315)
T ss_dssp             ---CCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE------SCSSCCSSCEEE--
T ss_pred             ---CCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc------cCCcCccceEEe--
Confidence               5689999999999999999999997531         23578999999999999983      335666665544  


Q ss_pred             cCceEEEEEcc
Q 010571          306 EGEHHLVAFGG  316 (507)
Q Consensus       306 ~~~~~l~v~GG  316 (507)
                        ++.|+++..
T Consensus       297 --~~~l~v~~~  305 (315)
T 4asc_A          297 --PVRLNVLRL  305 (315)
T ss_dssp             --EEEECGGGS
T ss_pred             --CCEEEEEEe
Confidence              447887764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.2e-42  Score=333.90  Aligned_cols=277  Identities=18%  Similarity=0.253  Sum_probs=233.8

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCC
Q 010571           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK  112 (507)
Q Consensus        33 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  112 (507)
                      .+.+++.||++||... ...+++++||+.+++|..++.+                |.+|.+|+++.++++||++||....
T Consensus        11 ~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~lyv~GG~~~~   73 (302)
T 2xn4_A           11 PMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAEL----------------PSRRCRAGMVYMAGLVFAVGGFNGS   73 (302)
T ss_dssp             ----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCC----------------SSCCBSCEEEEETTEEEEESCBCSS
T ss_pred             ccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccC----------------CcccccceEEEECCEEEEEeCcCCC
Confidence            3446889999999765 3578899999999999998754                4489999999999999999998755


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                      . ..+++++||+.+++|+.++   ++|.+|.+|+++.++++||++||.+... ..+++++||+.+++|+.+.   ++|.+
T Consensus        74 ~-~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~~  145 (302)
T 2xn4_A           74 L-RVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVA---PMNTR  145 (302)
T ss_dssp             S-BCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEEC---CCSSC
T ss_pred             c-cccceEEECCCCCceeeCC---CCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecC---CCCCc
Confidence            4 3678999999999999998   8999999999999999999999987543 5789999999999999997   67889


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCC--cCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcce
Q 010571          193 RYDHSAALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE  270 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~--~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d  270 (507)
                      |..|+++++ +++||++||.+..  ..++++++||+.+++|+.+   +++|.+|..|++++++++|||+||.++....++
T Consensus       146 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  221 (302)
T 2xn4_A          146 RSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI---AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKS  221 (302)
T ss_dssp             CBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEECCBSSSSBCCC
T ss_pred             ccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC---CCCccccccccEEEECCEEEEECCCCCCcccce
Confidence            999999988 5569999998654  3578999999999999997   578899999999999999999999887666789


Q ss_pred             EEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCCCc-ccCChhh
Q 010571          271 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPK-IFQSPAA  346 (507)
Q Consensus       271 ~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~~~-~~~~~~~  346 (507)
                      +++||+.+++|+.++.++    .++.++.+  +++++  .||++||.++. ..+++++||+.++.|...+ .++.++.
T Consensus       222 ~~~yd~~~~~W~~~~~~~----~~r~~~~~--~~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~  291 (302)
T 2xn4_A          222 VEVYDPTTNAWRQVADMN----MCRRNAGV--CAVNG--LLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRS  291 (302)
T ss_dssp             EEEEETTTTEEEEECCCS----SCCBSCEE--EEETT--EEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCB
T ss_pred             EEEEeCCCCCEeeCCCCC----CccccCeE--EEECC--EEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccc
Confidence            999999999999998764    34555543  34444  89999998754 5789999999999999876 5555553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=335.21  Aligned_cols=275  Identities=19%  Similarity=0.288  Sum_probs=238.4

Q ss_pred             ECCEEEEEcC-CCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCC
Q 010571           36 FDQKLYIVGG-SRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS  114 (507)
Q Consensus        36 ~~~~lyv~GG-~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  114 (507)
                      +++.||+||| .......+++++||+.+++|..++.+                |.+|.+|+++.++++||++||..... 
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~----------------p~~r~~~~~~~~~~~l~v~GG~~~~~-   75 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI----------------TRKRRYVASVSLHDRIYVIGGYDGRS-   75 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCBCSSC-
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCC----------------ChhhccccEEEECCEEEEEcCCCCCc-
Confidence            6899999999 66677889999999999999998754                34899999999999999999987443 


Q ss_pred             CcceEEEEECCCCc---EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 010571          115 DSMIVRFIDLETNL---CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~~d~~t~~---W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~  191 (507)
                      ..+++++||+.+++   |+.+.   ++|.+|..|+++.++++||++||.+... ..+++++||+.+++|+.+.   ++|.
T Consensus        76 ~~~~~~~~d~~~~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~---~~p~  148 (301)
T 2vpj_A           76 RLSSVECLDYTADEDGVWYSVA---PMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLG---DMQT  148 (301)
T ss_dssp             BCCCEEEEETTCCTTCCCEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEE---ECSS
T ss_pred             cCceEEEEECCCCCCCeeEECC---CCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECC---CCCC
Confidence            47789999999999   99997   8999999999999999999999997554 4889999999999999997   5788


Q ss_pred             CCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceE
Q 010571          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~  271 (507)
                      +|..|+++++ +++||++||.+....++++++||+.+++|+.+   +++|.+|..|++++++++|||+||.+.....+++
T Consensus       149 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v  224 (301)
T 2vpj_A          149 AREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV---TPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSV  224 (301)
T ss_dssp             CCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCE
T ss_pred             CcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCcEEeC---CCCCcccccceEEEECCEEEEEeCCCCCcccceE
Confidence            9999999988 56699999998777889999999999999997   5789999999999999999999998876668899


Q ss_pred             EEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCCCcccCChhh
Q 010571          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAA  346 (507)
Q Consensus       272 ~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~~~~~~~~~~  346 (507)
                      ++||+.+++|+.++.+    |.++.+++++  ++++  .||++||.++. ..++++.||+.++.|.....++.++.
T Consensus       225 ~~yd~~~~~W~~~~~~----p~~r~~~~~~--~~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~  292 (301)
T 2vpj_A          225 EAYNIRTDSWTTVTSM----TTPRCYVGAT--VLRG--RLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRC  292 (301)
T ss_dssp             EEEETTTTEEEEECCC----SSCCBSCEEE--EETT--EEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEE
T ss_pred             EEEeCCCCcEEECCCC----CCcccceeEE--EECC--EEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccc
Confidence            9999999999999866    3455555443  4444  79999998754 46899999999999998877666553

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.4e-42  Score=337.85  Aligned_cols=275  Identities=16%  Similarity=0.233  Sum_probs=233.2

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCC------CccCCceEEEECCCCceeEeeecccccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~------~~~~~~~~~~d~~t~~W~~~~~~~~~~~   76 (507)
                      .++|+|||.+++|...+.  +.|.||.+|+++++++.||++||...      ....+.+++||+.+++|..++.++    
T Consensus        24 ~~~~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p----   97 (318)
T 2woz_A           24 TAAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLP----   97 (318)
T ss_dssp             SEEEEEETTTTEEEEEEE--CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBS----
T ss_pred             cceEEECCCCCceecccC--CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCC----
Confidence            457999999999998653  45689999999999999999999531      122345999999999999987654    


Q ss_pred             CccccCCccCCCCCccceeeEEECCEEEEEcccCC-CCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEE
Q 010571           77 DKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLI  155 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~  155 (507)
                                  .+|.+|++++++++||++||... .....+++++||+.+++|+.+.   ++|.+|.+|++++++++||
T Consensus        98 ------------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iy  162 (318)
T 2woz_A           98 ------------SARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIY  162 (318)
T ss_dssp             ------------SCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSSCEESCEEEEETTEEE
T ss_pred             ------------ccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCCcccccEEEEECCEEE
Confidence                        48999999999999999999874 3345789999999999999997   8999999999999999999


Q ss_pred             EEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeee
Q 010571          156 IFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       156 ~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      ++||.+......+++++||+.+++|+.+.   ++|.+|..|+++++ +++|||+||......++++++||+.+++|+.+ 
T Consensus       163 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-  237 (318)
T 2woz_A          163 CLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-  237 (318)
T ss_dssp             EECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-
T ss_pred             EEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEEC-
Confidence            99998766667899999999999999997   67889999999888 55699999998777789999999999999997 


Q ss_pred             ecCCCCCCCcceEEEEECCEEEEEeccCCC---------CCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEc
Q 010571          236 IKGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE  306 (507)
Q Consensus       236 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~  306 (507)
                        +++|.+|..|++++++++|||+||.+..         ...+++++||+.+++|+.+  +    |.++.+++.+.+   
T Consensus       238 --~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~----~~~r~~~~~~~~---  306 (318)
T 2woz_A          238 --TEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--L----KEIRYASGASCL---  306 (318)
T ss_dssp             --CCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--E----SCCGGGTTCEEE---
T ss_pred             --CCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--c----ccccccccceee---
Confidence              5688999999999999999999997642         2367899999999999998  3    345566665544   


Q ss_pred             CceEEEEEc
Q 010571          307 GEHHLVAFG  315 (507)
Q Consensus       307 ~~~~l~v~G  315 (507)
                       ++.||++.
T Consensus       307 -~~~iyi~~  314 (318)
T 2woz_A          307 -ATRLNLFK  314 (318)
T ss_dssp             -EEEEEGGG
T ss_pred             -CCEEEEEE
Confidence             44787764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=330.21  Aligned_cols=262  Identities=18%  Similarity=0.275  Sum_probs=222.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccC-----C
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHY-----K  111 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~-----~  111 (507)
                      .+.||++||       +++++||+.+++|.. +.+              +.|.+|.+|+++.++++||++||..     .
T Consensus         4 ~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~--------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~   61 (315)
T 4asc_A            4 QDLIFMISE-------EGAVAYDPAANECYC-ASL--------------SSQVPKNHVSLVTKENQVFVAGGLFYNEDNK   61 (315)
T ss_dssp             EEEEEEEET-------TEEEEEETTTTEEEE-EEC--------------CCCSCSSEEEEECTTCCEEEEEEEEECSSCS
T ss_pred             ceEEEEEcC-------CceEEECCCCCeEec-CCC--------------CCCCCccceEEEEECCEEEEEcCcccCCCCC
Confidence            467999999       679999999999986 333              2356899999999999999999962     2


Q ss_pred             CCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcC--CCCCccCcEEEEEcCCCcEEEeecCCCC
Q 010571          112 KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED--RSRKLLNDVHFLDLETMTWDAVEVTQTP  189 (507)
Q Consensus       112 ~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~--~~~~~~~~~~~~d~~t~~W~~~~~~g~~  189 (507)
                      .....+++++||+.+++|+.++   ++|.+|.+|+++.++++||++||.+  ......+++++||+.+++|+.+.   ++
T Consensus        62 ~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~  135 (315)
T 4asc_A           62 EDPMSAYFLQFDHLDSEWLGMP---PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PL  135 (315)
T ss_dssp             SSCEEEEEEEEETTTTEEEECC---CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CC
T ss_pred             ccccccceEEecCCCCeEEECC---CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CC
Confidence            2223556999999999999987   8999999999999999999999975  33457899999999999999987   68


Q ss_pred             CCCCCCceEEEEcCcEEEEEeCC-CCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCc
Q 010571          190 PAPRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC  268 (507)
Q Consensus       190 p~~r~~~~~~~~~~~~l~i~GG~-~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~  268 (507)
                      |.+|..|++++++ ++|||+||. .....++++++||+.+++|+.+   +++|.+|..|++++++++|||+||.+.....
T Consensus       136 p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  211 (315)
T 4asc_A          136 PYVVYGHTVLSHM-DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL---APMQTARSLFGATVHDGRIIVAAGVTDTGLT  211 (315)
T ss_dssp             SSCCBSCEEEEET-TEEEEECCBCTTSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEEEEECSSSEE
T ss_pred             CCcccceeEEEEC-CEEEEEeCCCCCCcccceEEEEeCCCCeEEEC---CCCCCchhceEEEEECCEEEEEeccCCCCcc
Confidence            8899999999884 569999999 5557789999999999999997   5689999999999999999999998877678


Q ss_pred             ceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC----------CcCCeEEEEECCCCCCCCC
Q 010571          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRP  338 (507)
Q Consensus       269 ~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~~~~~~~~w~~~  338 (507)
                      +++++||+.+++|+.++.+    |.+|.+++++  ++++  .|||+||.++          ...+++++||+.++.|+.+
T Consensus       212 ~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~--~~~~--~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          212 SSAEVYSITDNKWAPFEAF----PQERSSLSLV--SLVG--TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEEETTTTEEEEECCC----SSCCBSCEEE--EETT--EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEECCCCeEEECCCC----CCcccceeEE--EECC--EEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            8999999999999999876    4455555444  4444  8999999853          3468999999999999987

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.2e-40  Score=329.57  Aligned_cols=284  Identities=14%  Similarity=0.146  Sum_probs=220.9

Q ss_pred             CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECC--CCceeEeeeccccccCccccCCccCCCCCccceeeEEEC
Q 010571           23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG  100 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~--t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~  100 (507)
                      ++|.+|.+|+++++++.|||+||...    +++++||+.  +++|..++.++.               .+|.+|++++++
T Consensus         5 ~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~---------------~~R~~~~~~~~~   65 (357)
T 2uvk_A            5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPG---------------GPRDQATSAFID   65 (357)
T ss_dssp             CCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTT---------------CCCBSCEEEEET
T ss_pred             CCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCC---------------CcCccceEEEEC
Confidence            68999999999999999999999653    579999998  489999886541               489999999999


Q ss_pred             CEEEEEcccCC----CCCCcceEEEEECCCCcEEEeecCCCCC-CCcccceEEEECCEEEEEcCcCCCC-----------
Q 010571          101 TKLLILGGHYK----KSSDSMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSR-----------  164 (507)
Q Consensus       101 ~~iyv~GG~~~----~~~~~~~~~~~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~l~~~GG~~~~~-----------  164 (507)
                      ++|||+||...    .....+++++||+.+++|+.+.   +++ .+|.+|++++++++||++||.+...           
T Consensus        66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLM---SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECS---CCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECC---CCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhc
Confidence            99999999822    2235778999999999999998   455 9999999999999999999986431           


Q ss_pred             ----------------------CccCcEEEEEcCCCcEEEeecCCCCCCCCCC-ceEEEEcCcEEEEEeCCCCC-cCCCc
Q 010571          165 ----------------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRYD-HSAALHANRYLIVFGGCSHS-IFFND  220 (507)
Q Consensus       165 ----------------------~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~-~~~~~~~~~~l~i~GG~~~~-~~~~~  220 (507)
                                            ...+++++||+.+++|+.+.   ++|.+|.. |+++++ +++||||||.... ..+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~  218 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDA  218 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCC
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEE-CCEEEEEeeecCCCcccCc
Confidence                                  24689999999999999996   46655544 888877 5569999997543 45789


Q ss_pred             EEEEEC--CCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC-----------------CCcceEEEEEcCcCee
Q 010571          221 LHVLDL--QTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----------------NGCQETIVLNMTKLAW  281 (507)
Q Consensus       221 i~~~d~--~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----------------~~~~d~~~~d~~~~~W  281 (507)
                      +++||+  .+++|+.+... +.|.+|..|++++++++|||+||.+..                 ..++++++||+.+++|
T Consensus       219 v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W  297 (357)
T 2uvk_A          219 VFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW  297 (357)
T ss_dssp             EEEEECC---CEEEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C
T ss_pred             eEEEEecCCCCcEEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce
Confidence            999987  89999997432 233446688899999999999996432                 2346899999999999


Q ss_pred             EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC--cCCeEEEEECCCCCCCCCccc
Q 010571          282 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--YNNEVFVMRLKPRDIPRPKIF  341 (507)
Q Consensus       282 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~--~~~~v~~~~~~~~~w~~~~~~  341 (507)
                      +.++.+|    .+|.++++  +++++  .|||+||.+..  ..++++.|+++.++|......
T Consensus       298 ~~~~~~p----~~r~~~~~--~~~~~--~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          298 DKSGELS----QGRAYGVS--LPWNN--SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             EEEEECS----SCCBSSEE--EEETT--EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             eeCCCCC----CCccccee--EEeCC--EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            9998764    45555544  34444  89999998753  468999999999999875443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=2.5e-40  Score=321.82  Aligned_cols=276  Identities=17%  Similarity=0.268  Sum_probs=228.3

Q ss_pred             CCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEE
Q 010571           25 PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLL  104 (507)
Q Consensus        25 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iy  104 (507)
                      ..||.++..   .+.||++||.       ++++||+.+++|...+.               ..|.+|.+|+++..+++||
T Consensus         6 ~~~r~~~~~---~~~i~~~GG~-------~~~~yd~~~~~W~~~~~---------------~~~~~r~~~~~~~~~~~ly   60 (318)
T 2woz_A            6 DIPRHGMFV---KDLILLVNDT-------AAVAYDPMENECYLTAL---------------AEQIPRNHSSIVTQQNQVY   60 (318)
T ss_dssp             SSCCCCCSE---EEEEEEECSS-------EEEEEETTTTEEEEEEE---------------CTTSCSSEEEEECSSSCEE
T ss_pred             cccccccee---cchhhhcccc-------ceEEECCCCCceecccC---------------CccCCccceEEEEECCEEE
Confidence            467777664   4689999993       48999999999988432               2246899999999999999


Q ss_pred             EEcccCCC-----CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC-CCCccCcEEEEEcCCC
Q 010571          105 ILGGHYKK-----SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETM  178 (507)
Q Consensus       105 v~GG~~~~-----~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~-~~~~~~~~~~~d~~t~  178 (507)
                      ++||....     ....+++++||+.+++|..++   ++|.+|.+|+++.++++||++||.+. .....+++++||+.++
T Consensus        61 v~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  137 (318)
T 2woz_A           61 VVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAA  137 (318)
T ss_dssp             EEESSCC-------CCCBEEEEEETTTTEEEECS---CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTT
T ss_pred             EECCcccCccccCCCccccEEEEeCCCCcEEECC---CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCC
Confidence            99996321     123456999999999999997   89999999999999999999999863 3456889999999999


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC-CCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEE
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY  257 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~  257 (507)
                      +|+.+.   ++|.+|.+|+++++ +++|||+||.. ....++++++||+.+++|+.+   +++|.+|..|++++++++||
T Consensus       138 ~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iy  210 (318)
T 2woz_A          138 KWSEVK---NLPIKVYGHNVISH-NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL---APMKTPRSMFGVAIHKGKIV  210 (318)
T ss_dssp             EEEEEC---CCSSCEESCEEEEE-TTEEEEECCEESSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEE
T ss_pred             CEeECC---CCCCcccccEEEEE-CCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC---CCCCCCcccceEEEECCEEE
Confidence            999997   67889999999887 55699999984 346789999999999999997   57889999999999999999


Q ss_pred             EEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC----------CcCCeEEE
Q 010571          258 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFV  327 (507)
Q Consensus       258 v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~v~~  327 (507)
                      |+||.+.....+++++||+.+++|+.++.+    |.+|.+++++  ++++  .||++||.+.          ...+++|+
T Consensus       211 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----p~~r~~~~~~--~~~~--~i~v~GG~~~~~~~~~~~~~~~~~~v~~  282 (318)
T 2woz_A          211 IAGGVTEDGLSASVEAFDLKTNKWEVMTEF----PQERSSISLV--SLAG--SLYAIGGFAMIQLESKEFAPTEVNDIWK  282 (318)
T ss_dssp             EEEEEETTEEEEEEEEEETTTCCEEECCCC----SSCCBSCEEE--EETT--EEEEECCBCCBC----CCBCCBCCCEEE
T ss_pred             EEcCcCCCCccceEEEEECCCCeEEECCCC----CCcccceEEE--EECC--EEEEECCeeccCCCCceeccceeeeEEE
Confidence            999987766678999999999999999776    3455555433  4444  8999999864          24789999


Q ss_pred             EECCCCCCCCCcccCChh
Q 010571          328 MRLKPRDIPRPKIFQSPA  345 (507)
Q Consensus       328 ~~~~~~~w~~~~~~~~~~  345 (507)
                      ||+.++.|+.+  ++.++
T Consensus       283 yd~~~~~W~~~--~~~~r  298 (318)
T 2woz_A          283 YEDDKKEWAGM--LKEIR  298 (318)
T ss_dssp             EETTTTEEEEE--ESCCG
T ss_pred             EeCCCCEehhh--ccccc
Confidence            99999999987  44444

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=1.1e-38  Score=315.30  Aligned_cols=260  Identities=19%  Similarity=0.331  Sum_probs=211.0

Q ss_pred             CCCeEeeCC--CCCeEEeccCCCCC-CccccceEEEECCEEEEEcCC-C----CCccCCceEEEECCCCceeEeeecccc
Q 010571            3 SGSWHLELP--YDLWVTLPVSGARP-SPRYKHAAAVFDQKLYIVGGS-R----NGRFLSDVQVFDLRSLAWSNLRLETEL   74 (507)
Q Consensus         3 ~~~~~~d~~--~~~W~~~~~~~~~p-~~r~~~~~~~~~~~lyv~GG~-~----~~~~~~~~~~~d~~t~~W~~~~~~~~~   74 (507)
                      +++|+||+.  ++.|..++   .+| .+|.+|+++++++.||||||. .    ....++++++||+.+++|..+++++  
T Consensus        31 ~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--  105 (357)
T 2uvk_A           31 TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--  105 (357)
T ss_dssp             TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC--
T ss_pred             CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC--
Confidence            578999998  59999998   688 899999999999999999997 2    2456789999999999999988653  


Q ss_pred             ccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCC---------------------------------CCcceEEE
Q 010571           75 DADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---------------------------------SDSMIVRF  121 (507)
Q Consensus        75 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---------------------------------~~~~~~~~  121 (507)
                                   |.+|.+|++++++++||++||.....                                 ...+++++
T Consensus       106 -------------p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  172 (357)
T 2uvk_A          106 -------------PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS  172 (357)
T ss_dssp             -------------SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred             -------------CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence                         46899999999999999999976432                                 13578999


Q ss_pred             EECCCCcEEEeecCCCCCCCcc-cceEEEECCEEEEEcCcCCCCCccCcEEEEEc--CCCcEEEeecCCCCCCCCCCceE
Q 010571          122 IDLETNLCGVMETSGKVPVARG-GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTPPAPRYDHSA  198 (507)
Q Consensus       122 ~d~~t~~W~~~~~~g~~p~~r~-~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~--~t~~W~~~~~~g~~p~~r~~~~~  198 (507)
                      ||+.+++|+.+.   ++|.+|. +++++.++++||+|||.+......++++.||+  .+++|+.+... +.|.+|.+|++
T Consensus       173 yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~  248 (357)
T 2uvk_A          173 FDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFA  248 (357)
T ss_dssp             EETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEE
T ss_pred             EeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccccceE
Confidence            999999999997   7887654 49999999999999998766666889999987  89999999743 33444667778


Q ss_pred             EEEcCcEEEEEeCCCC-----------------CcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEec
Q 010571          199 ALHANRYLIVFGGCSH-----------------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG  261 (507)
Q Consensus       199 ~~~~~~~l~i~GG~~~-----------------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG  261 (507)
                      +++ +++||||||.+.                 ...++++++||+.+++|+.+   +++|.+|..|++++++++||||||
T Consensus       249 ~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          249 GIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS---GELSQGRAYGVSLPWNNSLLIIGG  324 (357)
T ss_dssp             EEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE---EECSSCCBSSEEEEETTEEEEEEE
T ss_pred             EEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC---CCCCCCcccceeEEeCCEEEEEee
Confidence            877 556999999642                 22346899999999999997   568899999999999999999999


Q ss_pred             cCCCCC-cceEEEEEcCcCeeEEeccCC
Q 010571          262 GDNNNG-CQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       262 ~~~~~~-~~d~~~~d~~~~~W~~~~~~~  288 (507)
                      .+.... ++++++|+.++++|..+...+
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            876544 689999999999999987654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=2.3e-38  Score=337.93  Aligned_cols=284  Identities=14%  Similarity=0.149  Sum_probs=230.0

Q ss_pred             CCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEee-eccccccCccccCCccCCCCCccceeeEEE--
Q 010571           23 ARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLR-LETELDADKTEDSGLLEVLPPMSDHCMVKW--   99 (507)
Q Consensus        23 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~-~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--   99 (507)
                      ..|.+|++|+++ +++.||++||... ...+++++||+.+++|..++ +++.           ...|.+|.+|+++++  
T Consensus       384 ~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~-----------~~~p~~R~~hs~~~~~~  450 (695)
T 2zwa_A          384 CPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSS-----------SEVPVARMCHTFTTISR  450 (695)
T ss_dssp             CTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCC-----------SCCCCCCBSCEEEEETT
T ss_pred             CCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCC-----------CCCCccccceEEEEEcc
Confidence            466677776654 8999999999877 77899999999999999998 5332           245779999999999  


Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      +++||++||........+++++||+.+++|+.+.   ++|.+|.+|+++++ +++||+|||.+...    ++++||+.++
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~  523 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEE  523 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTT
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCC
Confidence            9999999999876656788999999999999997   89999999999997 99999999997654    8999999999


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEc-C-cEEEEEeCCCCC--cCCCcEEEEECCCCc------EEeeeecCCCCCCCcceE
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHA-N-RYLIVFGGCSHS--IFFNDLHVLDLQTNE------WSQPEIKGDLVTGRAGHA  248 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~-~-~~l~i~GG~~~~--~~~~~i~~~d~~~~~------W~~~~~~~~~p~~r~~~~  248 (507)
                      +|+.+.+.|++|.+|.+|++++++ + ++||||||...+  ..++++++||+.+++      |+.+..  .++.+|.+|+
T Consensus       524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~  601 (695)
T 2zwa_A          524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQ  601 (695)
T ss_dssp             EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCE
T ss_pred             ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccce
Confidence            999999888899999999977764 2 679999998543  678999999999999      888743  1257899999


Q ss_pred             EEEEC-CEEEEEeccCCCC---CcceEEEEEcCcCeeEEeccCCCCC----CCCCCCCceEEEEEcCceEEEEEcccC--
Q 010571          249 GITID-ENWYIVGGGDNNN---GCQETIVLNMTKLAWSILTSVKGRN----PLASEGLSVCSAIIEGEHHLVAFGGYN--  318 (507)
Q Consensus       249 ~~~~~-~~l~v~GG~~~~~---~~~d~~~~d~~~~~W~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~l~v~GG~~--  318 (507)
                      +++++ ++|||+||.+...   ..+++++||+.+++|+.++ ++...    ++.+.+|+  ++.+.+ +.|||+||..  
T Consensus       602 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~-~p~~~~~~~~p~~~gh~--~~~~~~-g~i~v~GGg~~c  677 (695)
T 2zwa_A          602 IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP-ISRRIWEDHSLMLAGFS--LVSTSM-GTIHIIGGGATC  677 (695)
T ss_dssp             EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC-CCHHHHHHSCCCCSSCE--EECC----CEEEECCEEEC
T ss_pred             EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee-ccccccCCCCccceeee--EEEeCC-CEEEEEeCCccC
Confidence            99999 9999999986553   4789999999999999653 32211    12344444  333333 2799999954  


Q ss_pred             ---CCcCCeEEEEECCC
Q 010571          319 ---GKYNNEVFVMRLKP  332 (507)
Q Consensus       319 ---~~~~~~v~~~~~~~  332 (507)
                         +...+++|.+|+..
T Consensus       678 fsfGt~~n~i~~ldl~~  694 (695)
T 2zwa_A          678 YGFGSVTNVGLKLIAIA  694 (695)
T ss_dssp             TTSCEEECCCEEEEECC
T ss_pred             cCccccccceEEEEEEc
Confidence               34467999998753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=6.3e-35  Score=311.38  Aligned_cols=254  Identities=19%  Similarity=0.217  Sum_probs=210.2

Q ss_pred             CCCeEeeCCCCCeEEecc---CCCCCCccccceEEEE--CCEEEEEcCCCCCc-cCCceEEEECCCCceeEeeecccccc
Q 010571            3 SGSWHLELPYDLWVTLPV---SGARPSPRYKHAAAVF--DQKLYIVGGSRNGR-FLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~---~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~-~~~~~~~~d~~t~~W~~~~~~~~~~~   76 (507)
                      +++|+||+.++.|+.++.   .+.+|.+|.+|+++++  ++.|||+||..... .++++++||+.+++|+.++.++    
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p----  487 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS----  487 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS----
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC----
Confidence            679999999999999983   2558999999999999  99999999987643 7899999999999999987654    


Q ss_pred             CccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC---C
Q 010571           77 DKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG---S  152 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~  152 (507)
                                  .+|.+|+++++ +++||++||.....    ++++||+.+++|+.+.+.|.+|.+|.+|++++++   +
T Consensus       488 ------------~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~  551 (695)
T 2zwa_A          488 ------------HTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK  551 (695)
T ss_dssp             ------------BCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred             ------------CCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence                        48999999997 99999999987655    7999999999999999777799999999988877   8


Q ss_pred             EEEEEcCcCCCC-CccCcEEEEEcCCCc------EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc---CCCcEE
Q 010571          153 RLIIFGGEDRSR-KLLNDVHFLDLETMT------WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLH  222 (507)
Q Consensus       153 ~l~~~GG~~~~~-~~~~~~~~~d~~t~~------W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~---~~~~i~  222 (507)
                      +||++||....+ ...+++++||+.+++      |+.+..  .++.+|.+|+++++++++|||+||.+...   ..++++
T Consensus       552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence            999999996554 568999999999999      888874  23578999999999757799999986553   689999


Q ss_pred             EEECCCCcEEeeeecCC----CCCCCcceEEEEECC-EEEEEeccCCC----CCcceEEEEEcCc
Q 010571          223 VLDLQTNEWSQPEIKGD----LVTGRAGHAGITIDE-NWYIVGGGDNN----NGCQETIVLNMTK  278 (507)
Q Consensus       223 ~~d~~~~~W~~~~~~~~----~p~~r~~~~~~~~~~-~l~v~GG~~~~----~~~~d~~~~d~~~  278 (507)
                      +||+.+++|+.+.....    .++.+.+|+++++++ +|||+||....    ...+++|.+|+..
T Consensus       630 ~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~  694 (695)
T 2zwa_A          630 SLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAIA  694 (695)
T ss_dssp             EEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred             EEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEEc
Confidence            99999999997532111    122577899888876 89999996432    2256788887643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=1.7e-33  Score=300.15  Aligned_cols=305  Identities=11%  Similarity=0.059  Sum_probs=225.0

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCc------cCCceEEEECCCCceeEeeeccccc
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGR------FLSDVQVFDLRSLAWSNLRLETELD   75 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~------~~~~~~~~d~~t~~W~~~~~~~~~~   75 (507)
                      +...|||..++|..++   ++  ||..|+++++  +++||++||.....      ..+.+++||+.+++|..++.++.  
T Consensus       167 ~~~~~dp~~~~W~~~~---~~--P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~--  239 (656)
T 1k3i_A          167 SYTAPQPGLGRWGPTI---DL--PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT--  239 (656)
T ss_dssp             CCCCCCTTSCEEEEEE---EC--SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC--
T ss_pred             ccccCCCCCCeeeeec---cC--CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC--
Confidence            3558999999999887   34  5577777777  99999999976532      23479999999999999887643  


Q ss_pred             cCccccCCccCCCCCcccee--eEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-C
Q 010571           76 ADKTEDSGLLEVLPPMSDHC--MVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G  151 (507)
Q Consensus        76 ~~~~~~~~~~~~p~~r~~~~--~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~  151 (507)
                                    +|..|+  ++. .+++||++||....     ++++||+.+++|..+.   +||.+|.+|+++++ +
T Consensus       240 --------------~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~d  297 (656)
T 1k3i_A          240 --------------KHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGP---DMQVARGYQSSATMSD  297 (656)
T ss_dssp             --------------SCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECC---CCSSCCSSCEEEECTT
T ss_pred             --------------CCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECC---CCCccccccceEEecC
Confidence                          444443  343 58999999997643     5999999999999997   89999999999999 9


Q ss_pred             CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCC--CCCCCCCCceEEEEcCcEEEEEeCCCCC----cCCCcEEEEE
Q 010571          152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLD  225 (507)
Q Consensus       152 ~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~l~i~GG~~~~----~~~~~i~~~d  225 (507)
                      ++||++||........+++++||+.+++|+.+...+  +++..+. + ++...++++|+|||.++.    ...++++.||
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd  375 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-Q-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY  375 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-T-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEE
T ss_pred             CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-c-ceeecCCceEEEECCCCcEEEecCccceeeee
Confidence            999999996444446889999999999999985433  2333333 2 333345669999998654    3468899999


Q ss_pred             CCCCcEEeeeecCCC----CCCCcceEEEE---ECCEEEEEeccCC---CCCcc---eEEEEEcCcCeeEEec--cCCCC
Q 010571          226 LQTNEWSQPEIKGDL----VTGRAGHAGIT---IDENWYIVGGGDN---NNGCQ---ETIVLNMTKLAWSILT--SVKGR  290 (507)
Q Consensus       226 ~~~~~W~~~~~~~~~----p~~r~~~~~~~---~~~~l~v~GG~~~---~~~~~---d~~~~d~~~~~W~~~~--~~~~~  290 (507)
                      +.++.|..+......    +.++..+++++   ++++|||+||...   ...++   .+++||+.++.|..+.  .+   
T Consensus       376 ~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m---  452 (656)
T 1k3i_A          376 TSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL---  452 (656)
T ss_dssp             CSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC---
T ss_pred             cCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC---
Confidence            999998875322211    22344555554   4899999999643   22234   6889999999999986  44   


Q ss_pred             CCCCCCCCceEEEEEcCceEEEEEcccCC-------CcCCeEEEEECCCCCCCCCcccCChhh
Q 010571          291 NPLASEGLSVCSAIIEGEHHLVAFGGYNG-------KYNNEVFVMRLKPRDIPRPKIFQSPAA  346 (507)
Q Consensus       291 ~p~~~~~~~~~~~~~~~~~~l~v~GG~~~-------~~~~~v~~~~~~~~~w~~~~~~~~~~~  346 (507)
                       |.+|..+  +++++++ +.|||+||.+.       ...+++++||+.++.|.....++.++.
T Consensus       453 -p~~R~~~--~~~~l~~-g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~  511 (656)
T 1k3i_A          453 -YFARTFH--TSVVLPD-GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRV  511 (656)
T ss_dssp             -SSCCBSC--EEEECTT-SCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCC
T ss_pred             -CCCcccC--CeEECCC-CCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccc
Confidence             3344444  3344533 37999999752       346899999999999998776666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=1e-32  Score=294.08  Aligned_cols=296  Identities=9%  Similarity=0.055  Sum_probs=220.1

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccce--EEE-ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccc
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHA--AAV-FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~--~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~   80 (507)
                      .+|+||+.+++|..++   .+|.+|..|+  +++ .++.||++||....    ++++||+.+++|..++.++        
T Consensus       220 ~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~~--------  284 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQ--------  284 (656)
T ss_dssp             EEEEECTTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCCS--------
T ss_pred             EEEEEeCCCCcEEeCc---ccCCCCCCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCCC--------
Confidence            5789999999999987   4677776554  444 48999999996543    7999999999999987654        


Q ss_pred             cCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCC--CCCCCcccceEEEECCEEEEE
Q 010571           81 DSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG--KVPVARGGHSVTLVGSRLIIF  157 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~l~~~  157 (507)
                              .+|.+|+++.+ +++||++||........+++++||+.+++|+.++..+  +++.++.. +++..++++|++
T Consensus       285 --------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~  355 (656)
T 1k3i_A          285 --------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLF  355 (656)
T ss_dssp             --------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEE
T ss_pred             --------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEE
Confidence                    48999999999 9999999996444445788999999999999985332  34445443 555578999999


Q ss_pred             cCcCCCC---CccCcEEEEEcCCCcEEEeecCCCC----CCCCCCceEEEE--cCcEEEEEeCCCC---CcCCC---cEE
Q 010571          158 GGEDRSR---KLLNDVHFLDLETMTWDAVEVTQTP----PAPRYDHSAALH--ANRYLIVFGGCSH---SIFFN---DLH  222 (507)
Q Consensus       158 GG~~~~~---~~~~~~~~~d~~t~~W~~~~~~g~~----p~~r~~~~~~~~--~~~~l~i~GG~~~---~~~~~---~i~  222 (507)
                      ||.++..   ...++++.||+.++.|.........    ++++..++++++  .+++||++||...   ...++   .++
T Consensus       356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~  435 (656)
T 1k3i_A          356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT  435 (656)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred             ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence            9986431   2367899999999998765432111    223455565553  3678999999642   23445   788


Q ss_pred             EEECCCCcEEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCC------CCCcceEEEEEcCcCeeEEeccCCCCCCCCC
Q 010571          223 VLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN------NNGCQETIVLNMTKLAWSILTSVKGRNPLAS  295 (507)
Q Consensus       223 ~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~------~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~  295 (507)
                      +||+.++.|..+. .+.+|.+|..|+++++ +++|||+||.+.      ....+++++||+.+++|+.++.+    |.+|
T Consensus       436 ~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~----~~~R  510 (656)
T 1k3i_A          436 LGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN----SIVR  510 (656)
T ss_dssp             CCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC----SSCC
T ss_pred             cCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC----CCcc
Confidence            9999999999874 2578999999999888 999999999653      23367899999999999998766    4566


Q ss_pred             CCCceEEEEEcCceEEEEEcccC-CC---cCCeEEEEEC
Q 010571          296 EGLSVCSAIIEGEHHLVAFGGYN-GK---YNNEVFVMRL  330 (507)
Q Consensus       296 ~~~~~~~~~~~~~~~l~v~GG~~-~~---~~~~v~~~~~  330 (507)
                      .+|+.+.  +..++.|||+||.. +.   ..-++..|.+
T Consensus       511 ~~hs~a~--ll~dg~v~v~GG~~~~~~~~~~~~~e~~~P  547 (656)
T 1k3i_A          511 VYHSISL--LLPDGRVFNGGGGLCGDCTTNHFDAQIFTP  547 (656)
T ss_dssp             CTTEEEE--ECTTSCEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred             ccccHhh--cCCCcEEEecCCCCCCCCCCCeeEEEEEeC
Confidence            6776443  32233799999953 21   2345666665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.65  E-value=6.9e-05  Score=71.94  Aligned_cols=272  Identities=8%  Similarity=-0.066  Sum_probs=155.2

Q ss_pred             CCCeEeeCCCCCeEEeccC--CCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCcee-EeeeccccccCcc
Q 010571            3 SGSWHLELPYDLWVTLPVS--GARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWS-NLRLETELDADKT   79 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~-~~~~~~~~~~~~~   79 (507)
                      +++-+||+.+.++..-...  ...+.....+.++..++.+|+...     ..+.+.++|+.+++-. .++..        
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-----~~~~v~viD~~t~~~~~~i~~~--------   83 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-----NSHVIFAIDINTFKEVGRITGF--------   83 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-----GGTEEEEEETTTCCEEEEEECC--------
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc-----CCCEEEEEECcccEEEEEcCCC--------
Confidence            4566899998887642100  012344555677778999999875     2357999999988763 33311        


Q ss_pred             ccCCccCCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC-cccceEEEECCEEEEE
Q 010571           80 EDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA-RGGHSVTLVGSRLIIF  157 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~-r~~~~~~~~~~~l~~~  157 (507)
                                 ..-+.++. .++++|+....      ...+.++|+.+++-......+..... ..-..++..++++|+.
T Consensus        84 -----------~~p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~  146 (328)
T 3dsm_A           84 -----------TSPRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVN  146 (328)
T ss_dssp             -----------SSEEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEE
T ss_pred             -----------CCCcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEE
Confidence                       11233333 68899998642      34699999999876543222221100 0112344478899987


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcC-----CCcEEEEECCCCcEE
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF-----FNDLHVLDLQTNEWS  232 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~-----~~~i~~~d~~~~~W~  232 (507)
                      .-.     ..+.+.++|+.+++....-..+..|     +.++...++++|+.........     .+.++++|+.+++..
T Consensus       147 ~~~-----~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~  216 (328)
T 3dsm_A          147 CWS-----YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE  216 (328)
T ss_dssp             ECT-----TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred             cCC-----CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence            421     1347999999998765543323222     3445556677777653221111     367999999988765


Q ss_pred             eeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEc-Cce
Q 010571          233 QPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE-GEH  309 (507)
Q Consensus       233 ~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~-~~~  309 (507)
                      ..-   ..+.......++.-  ++.+|+..+        .++++|+.+.+.......+      ..+.....+.++ .+.
T Consensus       217 ~~~---~~~~g~~p~~la~~~d~~~lyv~~~--------~v~~~d~~t~~~~~~~~~~------~~~~~p~gi~vdp~~g  279 (328)
T 3dsm_A          217 KQF---KFKLGDWPSEVQLNGTRDTLYWINN--------DIWRMPVEADRVPVRPFLE------FRDTKYYGLTVNPNNG  279 (328)
T ss_dssp             EEE---ECCTTCCCEEEEECTTSCEEEEESS--------SEEEEETTCSSCCSSCSBC------CCSSCEEEEEECTTTC
T ss_pred             EEE---ecCCCCCceeEEEecCCCEEEEEcc--------EEEEEECCCCceeeeeeec------CCCCceEEEEEcCCCC
Confidence            421   12222222233333  356777643        6889999887642211111      012233334454 366


Q ss_pred             EEEEEcccCCCcCCeEEEEECC
Q 010571          310 HLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       310 ~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                      .|||....+-.....|++||+.
T Consensus       280 ~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          280 EVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CEEEEECTTSSSEEEEEEECTT
T ss_pred             eEEEEcccccccCCEEEEECCC
Confidence            8888763221235679999986

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.30  E-value=0.00042  Score=62.56  Aligned_cols=209  Identities=15%  Similarity=0.013  Sum_probs=131.2

Q ss_pred             CCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCcc
Q 010571           88 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL  167 (507)
Q Consensus        88 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~  167 (507)
                      ++.-+-+.+...++.||+-.|....    +.+..+|+.+++=..-.   ++|....+..++..+++||+....      .
T Consensus        18 d~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~------~   84 (243)
T 3mbr_X           18 DTTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR------N   84 (243)
T ss_dssp             CTTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------S
T ss_pred             CCccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee------C
Confidence            3345556777789999999886543    35999999999766554   556666667788889999998653      4


Q ss_pred             CcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeecCCCCCCCcc
Q 010571          168 NDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAG  246 (507)
Q Consensus       168 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~  246 (507)
                      +.+++||+.+.+-..--+     .+..+.+++. .++.||+.-|      .+.++.+|+.+..-.. +.+ +..+.+...
T Consensus        85 ~~v~v~D~~tl~~~~ti~-----~~~~Gwglt~-dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V-~~~g~~~~~  151 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFR-----YPGEGWALTS-DDSHLYMSDG------TAVIRKLDPDTLQQVGSIKV-TAGGRPLDN  151 (243)
T ss_dssp             SEEEEEETTTTEEEEEEE-----CSSCCCEEEE-CSSCEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCC
T ss_pred             CEEEEEECCcCcEEEEEe-----CCCCceEEee-CCCEEEEECC------CCeEEEEeCCCCeEEEEEEE-ccCCccccc
Confidence            579999998876544322     2234555554 4566888765      2679999999876543 332 222222211


Q ss_pred             -eEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCC------CCCCCceEEEEEcCceEEEEEcccCC
Q 010571          247 -HAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL------ASEGLSVCSAIIEGEHHLVAFGGYNG  319 (507)
Q Consensus       247 -~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~l~v~GG~~~  319 (507)
                       --+..+++++|+---     ..+++.++|+.+..-...-.+.+..|.      +.....-..+..+..+.|||.|-.  
T Consensus       152 lNeLe~~~G~lyanvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~--  224 (243)
T 3mbr_X          152 LNELEWVNGELLANVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR--  224 (243)
T ss_dssp             EEEEEEETTEEEEEET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT--
T ss_pred             ceeeEEeCCEEEEEEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC--
Confidence             134456888885432     234799999999875443333321111      111222334444556789998753  


Q ss_pred             CcCCeEEEEECC
Q 010571          320 KYNNEVFVMRLK  331 (507)
Q Consensus       320 ~~~~~v~~~~~~  331 (507)
                        ...+|...+.
T Consensus       225 --wp~~~~v~~~  234 (243)
T 3mbr_X          225 --WPMLYEIRLT  234 (243)
T ss_dssp             --CSEEEEEEEC
T ss_pred             --CCcEEEEEEe
Confidence              5677776663

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.25  E-value=0.0038  Score=59.63  Aligned_cols=234  Identities=9%  Similarity=0.007  Sum_probs=133.7

Q ss_pred             CCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           52 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        52 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      .+.+..||+.|+++...-....           ...+.+...+.++..++++|+....      .+.+.++|+.+++-..
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~-----------n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~   78 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRA-----------NGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVG   78 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHH-----------HSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhh-----------cCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEE
Confidence            4679999999998754221100           0112234446677789999998752      3469999999987633


Q ss_pred             eecCCCCCCCcccceEEE-ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCC-CCCCceEEEEcCcEEEEE
Q 010571          132 METSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVF  209 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~-~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~i~  209 (507)
                      .-+  ....+   ..++. -++++|+....      .+.+.++|+.+.+-...-..+.... ...-+.++. .++++|+.
T Consensus        79 ~i~--~~~~p---~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~  146 (328)
T 3dsm_A           79 RIT--GFTSP---RYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVN  146 (328)
T ss_dssp             EEE--CCSSE---EEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEE
T ss_pred             EcC--CCCCC---cEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEE
Confidence            221  12222   23333 57799887642      3579999999987653322222100 001223444 57778887


Q ss_pred             eCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE-ECCEEEEEeccCCCCC-----cceEEEEEcCcCeeEE
Q 010571          210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNG-----CQETIVLNMTKLAWSI  283 (507)
Q Consensus       210 GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~-----~~d~~~~d~~~~~W~~  283 (507)
                      .-.    ..+.+.++|+.+++....-..+..|     +.++. -++++|+.........     .+.++++|+.+.+...
T Consensus       147 ~~~----~~~~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~  217 (328)
T 3dsm_A          147 CWS----YQNRILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK  217 (328)
T ss_dssp             ECT----TCCEEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred             cCC----CCCEEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence            521    1367999999998765422112222     22222 2578877754321111     2579999999887654


Q ss_pred             eccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCC
Q 010571          284 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  336 (507)
Q Consensus       284 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~  336 (507)
                      ...++..      ......++.+++..||+..+       .++.+|+.+....
T Consensus       218 ~~~~~~g------~~p~~la~~~d~~~lyv~~~-------~v~~~d~~t~~~~  257 (328)
T 3dsm_A          218 QFKFKLG------DWPSEVQLNGTRDTLYWINN-------DIWRMPVEADRVP  257 (328)
T ss_dssp             EEECCTT------CCCEEEEECTTSCEEEEESS-------SEEEEETTCSSCC
T ss_pred             EEecCCC------CCceeEEEecCCCEEEEEcc-------EEEEEECCCCcee
Confidence            3222210      11223334444678888654       7999999776653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.23  E-value=0.0007  Score=61.11  Aligned_cols=163  Identities=17%  Similarity=0.104  Sum_probs=106.4

Q ss_pred             cccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEc
Q 010571           28 RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        28 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~G  107 (507)
                      -+-+++...++.||+-.|..+   .+.+.++|+.+++-...-..+                ..-++.+++..+++||+..
T Consensus        21 ~ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~----------------~~~fgeGi~~~~~~ly~lt   81 (243)
T 3mbr_X           21 AFTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVP----------------PPYFGAGIVAWRDRLIQLT   81 (243)
T ss_dssp             CCEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECC----------------TTCCEEEEEEETTEEEEEE
T ss_pred             cccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCC----------------CCcceeEEEEeCCEEEEEE
Confidence            344577778999999998543   367899999999765544332                2446678888899999985


Q ss_pred             ccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCC
Q 010571          108 GHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ  187 (507)
Q Consensus       108 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g  187 (507)
                      ..      .+.+++||+.|.+-..--     |.+..+.+++.-++.+|+.-|       .+.++.+|+.|.+-..--..+
T Consensus        82 w~------~~~v~v~D~~tl~~~~ti-----~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~  143 (243)
T 3mbr_X           82 WR------NHEGFVYDLATLTPRARF-----RYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVT  143 (243)
T ss_dssp             SS------SSEEEEEETTTTEEEEEE-----ECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECE
T ss_pred             ee------CCEEEEEECCcCcEEEEE-----eCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEc
Confidence            32      446999999988654332     222356667766778888754       347999999997654332222


Q ss_pred             CCCCCCCCc-eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          188 TPPAPRYDH-SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       188 ~~p~~r~~~-~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ..+.+...- -+..+ +++||+---     ..|+|.+.|+.++.-..
T Consensus       144 ~~g~~~~~lNeLe~~-~G~lyanvw-----~s~~I~vIDp~tG~V~~  184 (243)
T 3mbr_X          144 AGGRPLDNLNELEWV-NGELLANVW-----LTSRIARIDPASGKVVA  184 (243)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEET-----TTTEEEEECTTTCBEEE
T ss_pred             cCCcccccceeeEEe-CCEEEEEEC-----CCCeEEEEECCCCCEEE
Confidence            222222221 23333 666775332     24789999999987443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.96  E-value=0.0028  Score=57.71  Aligned_cols=204  Identities=10%  Similarity=-0.014  Sum_probs=123.3

Q ss_pred             cceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEE
Q 010571           92 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  171 (507)
Q Consensus        92 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~  171 (507)
                      +...+...++.||+-.|...    .+.+.++|+.|++=..-.   +++....+..++..+++||+....      .+.++
T Consensus        44 ftqGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~------~~~v~  110 (262)
T 3nol_A           44 FTEGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK------NGLGF  110 (262)
T ss_dssp             EEEEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS------SSEEE
T ss_pred             ccceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee------CCEEE
Confidence            34555556899999988654    345999999999765544   445444556678889999998653      45799


Q ss_pred             EEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeecC-CCCCCCcceEE
Q 010571          172 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKG-DLVTGRAGHAG  249 (507)
Q Consensus       172 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~-~~p~~r~~~~~  249 (507)
                      +||+.+.+-..--.     .+-.+.+++. .++.||+.-|      .+.++.+|+.+..-.. +.+.. ..|...-. -+
T Consensus       111 v~D~~t~~~~~ti~-----~~~eG~glt~-dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN-EL  177 (262)
T 3nol_A          111 VWNIRNLRQVRSFN-----YDGEGWGLTH-NDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELN-EL  177 (262)
T ss_dssp             EEETTTCCEEEEEE-----CSSCCCCEEE-CSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEE-EE
T ss_pred             EEECccCcEEEEEE-----CCCCceEEec-CCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccc-ee
Confidence            99999877543321     1224445554 4566888654      2679999999876443 33211 11111111 23


Q ss_pred             EEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCC-----CCCCCceEEEEEcCceEEEEEcccCCCcCCe
Q 010571          250 ITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPL-----ASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE  324 (507)
Q Consensus       250 ~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~  324 (507)
                      ...+++||+---     ..+++.++|+.+..-...-.+++..|.     +.....-..+..+..+.|||.|-.    ...
T Consensus       178 e~~~G~lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~----Wp~  248 (262)
T 3nol_A          178 EWVDGEIFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL----WPK  248 (262)
T ss_dssp             EEETTEEEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT----CSE
T ss_pred             EEECCEEEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC----CCc
Confidence            445888885421     234799999999875544344322111     111222334445556789998853    566


Q ss_pred             EEEEEC
Q 010571          325 VFVMRL  330 (507)
Q Consensus       325 v~~~~~  330 (507)
                      +|...+
T Consensus       249 ~~ev~~  254 (262)
T 3nol_A          249 VFEITL  254 (262)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            666554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.93  E-value=0.0015  Score=59.46  Aligned_cols=161  Identities=13%  Similarity=0.006  Sum_probs=101.6

Q ss_pred             cceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEccc
Q 010571           30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGH  109 (507)
Q Consensus        30 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~  109 (507)
                      -.++...++.||+-.|..+   .+.+.++|+.|++-...-..+                +.-++..++..+++||+.-..
T Consensus        45 tqGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~----------------~~~FgeGit~~g~~ly~ltw~  105 (262)
T 3nol_A           45 TEGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELG----------------KRYFGEGISDWKDKIVGLTWK  105 (262)
T ss_dssp             EEEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECC----------------TTCCEEEEEEETTEEEEEESS
T ss_pred             cceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecC----------------CccceeEEEEeCCEEEEEEee
Confidence            3556666899999988442   256889999999765443332                234566788889999998542


Q ss_pred             CCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCC
Q 010571          110 YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP  189 (507)
Q Consensus       110 ~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~  189 (507)
                            .+.+++||+.|.+-..--     +.+-.+.+++.-++.+|+.-|       .+.++.+|+.|.+-..--.-+..
T Consensus       106 ------~~~v~v~D~~t~~~~~ti-----~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~  167 (262)
T 3nol_A          106 ------NGLGFVWNIRNLRQVRSF-----NYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAH  167 (262)
T ss_dssp             ------SSEEEEEETTTCCEEEEE-----ECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEET
T ss_pred             ------CCEEEEEECccCcEEEEE-----ECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccC
Confidence                  346999999988654332     222255566666678888654       34799999998764433211111


Q ss_pred             CCCCCCc-eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          190 PAPRYDH-SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       190 p~~r~~~-~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ..+...- -+... ++.||+--     ...++|.+.|+.++.-..
T Consensus       168 g~~~~~lNELe~~-~G~lyan~-----w~~~~I~vIDp~tG~V~~  206 (262)
T 3nol_A          168 GEELPELNELEWV-DGEIFANV-----WQTNKIVRIDPETGKVTG  206 (262)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEE-----TTSSEEEEECTTTCBEEE
T ss_pred             CccccccceeEEE-CCEEEEEE-----ccCCeEEEEECCCCcEEE
Confidence            1111111 13334 66688632     234789999999987544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.85  E-value=0.029  Score=55.69  Aligned_cols=198  Identities=15%  Similarity=0.195  Sum_probs=111.1

Q ss_pred             eEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEc
Q 010571           96 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus        96 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                      ++..++..++.|+.+.      .+.+||+.+..-....     ........++.+++..++.|+.+      +.+.+||+
T Consensus       244 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~  306 (445)
T 2ovr_B          244 CVQYDGRRVVSGAYDF------MVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLD------TSIRVWDV  306 (445)
T ss_dssp             EEEECSSCEEEEETTS------CEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETT------SCEEEEET
T ss_pred             EEEECCCEEEEEcCCC------EEEEEECCCCcEeEEe-----cCCCCceEEEEECCCEEEEEeCC------CeEEEEEC
Confidence            3444777777776532      3888888776533222     11112223344467667777653      35999999


Q ss_pred             CCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCE
Q 010571          176 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN  255 (507)
Q Consensus       176 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~  255 (507)
                      .+.+-...-. +    ......+....++ +++.|+.+     ..+.+||+.++.-...- .+. ........++.+++.
T Consensus       307 ~~~~~~~~~~-~----~~~~v~~~~~~~~-~l~~~~~d-----g~i~vwd~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~  373 (445)
T 2ovr_B          307 ETGNCIHTLT-G----HQSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTL-QGP-NKHQSAVTCLQFNKN  373 (445)
T ss_dssp             TTCCEEEEEC-C----CCSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-CST-TSCSSCEEEEEECSS
T ss_pred             CCCCEEEEEc-C----CcccEEEEEEeCC-EEEEEeCC-----CeEEEEECCCCcEEEEE-ccC-CCCCCCEEEEEECCC
Confidence            8876443321 1    1112223334455 66666654     46889998776543321 111 112222344556777


Q ss_pred             EEEEeccCCCCCcceEEEEEcCcCeeEE-eccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          256 WYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       256 l~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      +++.|+.++     .+.+||+.+..... +.....    .........+.+.++..++++|+.++.....++++|...
T Consensus       374 ~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          374 FVITSSDDG-----TVKLWDLKTGEFIRNLVTLES----GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEEETTS-----EEEEEETTTCCEEEEEEECTT----GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEEeCCC-----eEEEEECCCCceeeeeecccc----CCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            888877543     58899988876543 211110    111223444556666778888998887777889998864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.83  E-value=0.0018  Score=64.18  Aligned_cols=269  Identities=10%  Similarity=-0.053  Sum_probs=135.6

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ..|.+|+....+..+..   .+.+....+++.. ++.+|+.++.+     ..+.+||+.++...........        
T Consensus       102 ~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~--------  165 (433)
T 3bws_A          102 KLIALDKEGITHRFISR---FKTGFQPKSVRFIDNTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKY--------  165 (433)
T ss_dssp             CEEECCBTTCSEEEEEE---EECSSCBCCCEESSSSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHH--------
T ss_pred             EEEEECCCCCcceEEEE---EcCCCCceEEEEeCCCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccc--------
Confidence            46778887776665542   2222222233333 67788777633     3599999998876543322110        


Q ss_pred             CccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEc
Q 010571           83 GLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFG  158 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~G  158 (507)
                           .........+.+  ++.+|+.|+..      ..+.+||+.+++......    .....-.+++..  +..+|+.+
T Consensus       166 -----~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~  230 (433)
T 3bws_A          166 -----KKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSN  230 (433)
T ss_dssp             -----HTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEE
T ss_pred             -----cccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEe
Confidence                 001112222333  67888887643      358999998876543321    111111222332  34677766


Q ss_pred             CcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc---CCCcEEEEECCCCcEEeee
Q 010571          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       159 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~---~~~~i~~~d~~~~~W~~~~  235 (507)
                      +.+      +.+.+||+.+++......     ......+++...++..+++++.....   .-..+.+||+.+.......
T Consensus       231 ~~~------~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~  299 (433)
T 3bws_A          231 WIS------EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI  299 (433)
T ss_dssp             TTT------TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred             cCC------CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence            532      369999998876644321     11112333343454344444432221   1246899999887654421


Q ss_pred             ecCCCCCCCcceEEEEE--CC-EEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEE
Q 010571          236 IKGDLVTGRAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLV  312 (507)
Q Consensus       236 ~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~  312 (507)
                      ..     +. ....+.+  ++ .+|+.++.+     ..+.+||+.+..-.......        .........+++..|+
T Consensus       300 ~~-----~~-~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~--------~~~~~~~~s~dg~~l~  360 (433)
T 3bws_A          300 GP-----PG-NKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKSIPVF--------DKPNTIALSPDGKYLY  360 (433)
T ss_dssp             EE-----EE-CEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEEEECS--------SSEEEEEECTTSSEEE
T ss_pred             cC-----CC-CcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEEecCC--------CCCCeEEEcCCCCEEE
Confidence            10     11 1122333  33 577766533     25889998876543321111        1112233334444555


Q ss_pred             EEcccCC----------CcCCeEEEEECCCC
Q 010571          313 AFGGYNG----------KYNNEVFVMRLKPR  333 (507)
Q Consensus       313 v~GG~~~----------~~~~~v~~~~~~~~  333 (507)
                      +.+...+          .....++.+|+.+.
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             EEecCCCccccccccccccceEEEEEECCCC
Confidence            5443221          11347999998654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.83  E-value=0.013  Score=53.81  Aligned_cols=206  Identities=14%  Similarity=-0.021  Sum_probs=120.5

Q ss_pred             eeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEE
Q 010571           94 HCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus        94 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~  172 (507)
                      +.++..+ +.||+..|...    .+.+.++|+.+++=..-.   +++....+..++..++.||+....      .+.+.+
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~v   90 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWL------KNIGFI   90 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETT------CSEEEE
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEec------CCEEEE
Confidence            5666655 89999877432    346999999999755443   233333445667778899998642      457999


Q ss_pred             EEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeecCCCCCCCc-ceEEE
Q 010571          173 LDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRA-GHAGI  250 (507)
Q Consensus       173 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~-~~~~~  250 (507)
                      ||+.+.+=..--+.+ .|   .+.+++. .++.+|+..|      .+.++.+|+.+..-.. +.+ +..+.+.. -..+.
T Consensus        91 iD~~t~~v~~~i~~g-~~---~g~glt~-Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~nele  158 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQ-MK---DGWGLAT-DGKILYGSDG------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLNELE  158 (266)
T ss_dssp             EETTTTEEEEEEECC-SS---SCCEEEE-CSSSEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEE
T ss_pred             EECCCCcEEEEEECC-CC---CeEEEEE-CCCEEEEECC------CCeEEEEECCCCcEEEEEEE-CCCCcccccceeEE
Confidence            999887543322222 12   2333333 4566888654      3789999999876433 332 22222211 11333


Q ss_pred             EECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCC------CCCCCCCCceEEEEEcCceEEEEEcccCCCcCCe
Q 010571          251 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR------NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE  324 (507)
Q Consensus       251 ~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~  324 (507)
                      ..++.+|+--.     ..+++.++|+.+.+-...-.+++.      ...+........+..++.+.+||.|+.    .+.
T Consensus       159 ~~dg~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~----~~~  229 (266)
T 2iwa_A          159 YINGEVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL----WPK  229 (266)
T ss_dssp             EETTEEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT----CSE
T ss_pred             EECCEEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC----CCe
Confidence            44788886532     234799999998864332222110      000111122344455566789998875    467


Q ss_pred             EEEEECCCC
Q 010571          325 VFVMRLKPR  333 (507)
Q Consensus       325 v~~~~~~~~  333 (507)
                      ++..++...
T Consensus       230 v~~i~l~~~  238 (266)
T 2iwa_A          230 LFEIKLHLV  238 (266)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecc
Confidence            888887543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.82  E-value=0.0022  Score=58.43  Aligned_cols=158  Identities=9%  Similarity=-0.004  Sum_probs=101.3

Q ss_pred             cceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEccc
Q 010571           30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGH  109 (507)
Q Consensus        30 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~  109 (507)
                      .+++...++.||+-.|..+.     +.++|+.|++-...- .+                ..-++..++..+++||+....
T Consensus        57 tqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~~-l~----------------~~~FgeGit~~g~~Ly~ltw~  114 (268)
T 3nok_A           57 TQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWME-RL----------------GNIFAEGLASDGERLYQLTWT  114 (268)
T ss_dssp             EEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEEE-EC----------------TTCCEEEEEECSSCEEEEESS
T ss_pred             cceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeEE-CC----------------CCcceeEEEEeCCEEEEEEcc
Confidence            35666678999999985432     889999998754433 22                134556688889999998542


Q ss_pred             CCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCC
Q 010571          110 YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP  189 (507)
Q Consensus       110 ~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~  189 (507)
                            .+.+++||+.|.+-..--     +.+..+.+++.-++.||+.-|       .+.++.+|+.|.+-..--..+..
T Consensus       115 ------~~~v~V~D~~Tl~~~~ti-----~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~  176 (268)
T 3nok_A          115 ------EGLLFTWSGMPPQRERTT-----RYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLR  176 (268)
T ss_dssp             ------SCEEEEEETTTTEEEEEE-----ECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEET
T ss_pred             ------CCEEEEEECCcCcEEEEE-----eCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCC
Confidence                  346999999988654332     222345677777889999765       34799999999765433221122


Q ss_pred             CCCCCCc-eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          190 PAPRYDH-SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       190 p~~r~~~-~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      +.+...- -+... ++.||+--     ...++|.+.|+.++.-..
T Consensus       177 g~~v~~lNeLe~~-dG~lyanv-----w~s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYANI-----WHSSDVLEIDPATGTVVG  215 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEE-----TTCSEEEEECTTTCBEEE
T ss_pred             CcccccccccEEe-CCEEEEEE-----CCCCeEEEEeCCCCcEEE
Confidence            2222111 12333 66677522     224789999999987443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=97.79  E-value=0.021  Score=54.38  Aligned_cols=231  Identities=10%  Similarity=0.009  Sum_probs=115.3

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      .++.+|+.+.+-......+     ...++++..  ++.+|+.++..     ..+.+||+.++.-...-..+..     ..
T Consensus        70 ~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-----~~  134 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIHND-----LKPFGATINNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDR-----KR  134 (353)
T ss_dssp             EEEEECTTTCCEEEEEEES-----SCCCSEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCC-----CC
T ss_pred             cEEEEcCCCCeEEEEEecC-----CCcceEEECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCC-----cc
Confidence            4678888877654332111     112334333  45688776632     4789999998875332222110     00


Q ss_pred             CCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEE
Q 010571           82 SGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~  157 (507)
                         .....+..-+.++..  ++.+|+.+...     ...+++||+.+++-.....   . ....-..++..  ++.+|+.
T Consensus       135 ---~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~~  202 (353)
T 3vgz_A          135 ---TEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYTT  202 (353)
T ss_dssp             ---CSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEEC---C-CCTTCCCCEEETTTTEEEEE
T ss_pred             ---ccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEec---C-CCCccceEEECCCCCEEEEE
Confidence               000001111223332  45677766321     2359999999886544331   1 11111222332  3466665


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeee
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      ..       .+.+..||+.+.+-......+..........++... ++.+|+.+..     .+.+++||+.++.....-.
T Consensus       203 ~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          203 NA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             CT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEE
T ss_pred             cC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEE
Confidence            43       246889999887654433221111111222234443 4456665432     2679999998877554321


Q ss_pred             cCCCCCCCcceEEEEECC-EEEEEeccCCCCCcceEEEEEcCcCeeEE
Q 010571          237 KGDLVTGRAGHAGITIDE-NWYIVGGGDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W~~  283 (507)
                         .+.+  .+.+..-++ .+|+.+..+     +.+.++|+.+.....
T Consensus       271 ---~~~~--~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          271 ---APES--LAVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVK  308 (353)
T ss_dssp             ---CSSC--CCEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             ---cCCC--ceEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEE
Confidence               1222  112222233 477665422     368899998876544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.78  E-value=0.032  Score=53.96  Aligned_cols=217  Identities=14%  Similarity=0.159  Sum_probs=118.4

Q ss_pred             CCeEeeCCCC--CeEEeccCCCC----CCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccc
Q 010571            4 GSWHLELPYD--LWVTLPVSGAR----PSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELD   75 (507)
Q Consensus         4 ~~~~~d~~~~--~W~~~~~~~~~----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~   75 (507)
                      .+++||+.+.  .|..-......    .......+.++.++.||+...      ...++.||+.+++  |..-..     
T Consensus        64 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~-----  132 (376)
T 3q7m_A           64 LVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE------KAQVYALNTSDGTVAWQTKVA-----  132 (376)
T ss_dssp             EEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET------TSEEEEEETTTCCEEEEEECS-----
T ss_pred             eEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC------CCEEEEEECCCCCEEEEEeCC-----
Confidence            5688998644  57644321100    022333445566888888643      2469999999875  654221     


Q ss_pred             cCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEECCE
Q 010571           76 ADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSR  153 (507)
Q Consensus        76 ~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~  153 (507)
                                    .....+.+..++.||+..+       ...++.||+.+++  |+..... .....+...+.+..++.
T Consensus       133 --------------~~~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~  190 (376)
T 3q7m_A          133 --------------GEALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDM-PSLSLRGESAPTTAFGA  190 (376)
T ss_dssp             --------------SCCCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC------CCCCCCEEETTE
T ss_pred             --------------CceEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCC-CceeecCCCCcEEECCE
Confidence                          1112233455888887543       2359999998875  8765421 11111222334455777


Q ss_pred             EEEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCC-------CCceEEEEcCcEEEEEeCCCCCcCCCcEEEE
Q 010571          154 LIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPR-------YDHSAALHANRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       154 l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r-------~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~  224 (507)
                      +|+ |..      ...++.||+.+++  |.....   .|...       ...+..++.++.+|+.+ .+     ..++.+
T Consensus       191 v~~-g~~------~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~-----g~l~~~  254 (376)
T 3q7m_A          191 AVV-GGD------NGRVSAVLMEQGQMIWQQRIS---QATGSTEIDRLSDVDTTPVVVNGVVFALA-YN-----GNLTAL  254 (376)
T ss_dssp             EEE-CCT------TTEEEEEETTTCCEEEEEECC---C-----------CCCCCCEEETTEEEEEC-TT-----SCEEEE
T ss_pred             EEE-EcC------CCEEEEEECCCCcEEEEEecc---cCCCCcccccccccCCCcEEECCEEEEEe-cC-----cEEEEE
Confidence            666 322      2369999997764  765432   11111       01122233466566643 22     468999


Q ss_pred             ECCCCc--EEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCe--eEE
Q 010571          225 DLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA--WSI  283 (507)
Q Consensus       225 d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~--W~~  283 (507)
                      |+.++.  |+..     .+   ...+.++.++.+|+... +     ..++.||+.+..  |+.
T Consensus       255 d~~tG~~~w~~~-----~~---~~~~~~~~~~~l~~~~~-~-----g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          255 DLRSGQIMWKRE-----LG---SVNDFIVDGNRIYLVDQ-N-----DRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             ETTTCCEEEEEC-----CC---CEEEEEEETTEEEEEET-T-----CCEEEEETTTCCEEEEE
T ss_pred             ECCCCcEEeecc-----CC---CCCCceEECCEEEEEcC-C-----CeEEEEECCCCcEEEee
Confidence            998764  7652     11   12234555778887643 1     258899987764  764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.73  E-value=0.0086  Score=58.19  Aligned_cols=256  Identities=13%  Similarity=0.068  Sum_probs=133.6

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcc
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~   79 (507)
                      |..++++|+.+.+-......   .  ..-++++..  +..||+.|+.+     ..+.++|+.+++....-...       
T Consensus        11 d~~v~v~d~~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~-------   73 (391)
T 1l0q_A           11 SDNISVIDVTSNKVTATIPV---G--SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAG-------   73 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEEC---S--SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECS-------
T ss_pred             CCEEEEEECCCCeEEEEeec---C--CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECC-------
Confidence            34567888887765443311   1  112333333  44677776532     46899999988754433221       


Q ss_pred             ccCCccCCCCCccceeeEEE---CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEE
Q 010571           80 EDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRL  154 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l  154 (507)
                                .  ....+.+   ++.||+.|..      ...+.+||+.+++.......     .....+++..  +..+
T Consensus        74 ----------~--~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l  130 (391)
T 1l0q_A           74 ----------S--SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKKL  130 (391)
T ss_dssp             ----------S--SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEE
T ss_pred             ----------C--CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeC-----CCCcceEEECCCCCEE
Confidence                      1  1222223   4456666542      23599999999876544321     1111223332  3367


Q ss_pred             EEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          155 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       155 ~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      |+.++.      .+.+.++|+.+.+.......+..     ...++...+ +.+|+.++.+     +.+++||+.++....
T Consensus       131 ~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          131 YVTNNG------DKTVSVINTVTKAVINTVSVGRS-----PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVID  194 (391)
T ss_dssp             EEEETT------TTEEEEEETTTTEEEEEEECCSS-----EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEEeCC------CCEEEEEECCCCcEEEEEecCCC-----cceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEE
Confidence            777653      24699999998876655432221     123333334 4566666543     469999998876554


Q ss_pred             eeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEE
Q 010571          234 PEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL  311 (507)
Q Consensus       234 ~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l  311 (507)
                      ...     ... ....+.+  ++..+++++...  ....+.+||+.+..-...  ++..      .........+++..|
T Consensus       195 ~~~-----~~~-~~~~~~~~~~g~~l~~~~~~~--~~~~v~~~d~~~~~~~~~--~~~~------~~~~~~~~s~dg~~l  258 (391)
T 1l0q_A          195 TVK-----VEA-APSGIAVNPEGTKAYVTNVDK--YFNTVSMIDTGTNKITAR--IPVG------PDPAGIAVTPDGKKV  258 (391)
T ss_dssp             EEE-----CSS-EEEEEEECTTSSEEEEEEECS--SCCEEEEEETTTTEEEEE--EECC------SSEEEEEECTTSSEE
T ss_pred             EEe-----cCC-CccceEECCCCCEEEEEecCc--CCCcEEEEECCCCeEEEE--EecC------CCccEEEEccCCCEE
Confidence            321     111 1122333  344444444211  123688999887754322  2111      111223334445567


Q ss_pred             EEEcccCCCcCCeEEEEECCCC
Q 010571          312 VAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       312 ~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      ++.++.+    +.+.++|+.+.
T Consensus       259 ~~s~~~d----~~v~v~d~~~~  276 (391)
T 1l0q_A          259 YVALSFX----NTVSVIDTATN  276 (391)
T ss_dssp             EEEETTT----TEEEEEETTTT
T ss_pred             EEEcCCC----CEEEEEECCCC
Confidence            7766543    56777777543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.72  E-value=0.028  Score=51.55  Aligned_cols=202  Identities=11%  Similarity=-0.060  Sum_probs=117.1

Q ss_pred             cceEEEEC-CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571           30 KHAAAVFD-QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        30 ~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG  108 (507)
                      -|++++.+ +.||+..|..   ..+.+.++|+.|++-...-..+                ....+..++..+++||+..-
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~----------------~~~fgeGi~~~g~~lyv~t~   83 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMD----------------DSYFGEGLTLLNEKLYQVVW   83 (266)
T ss_dssp             EEEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECC----------------TTCCEEEEEEETTEEEEEET
T ss_pred             cccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecC----------------CCcceEEEEEeCCEEEEEEe
Confidence            46777766 8999987732   2367999999998855433222                13355677778999999853


Q ss_pred             cCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCC
Q 010571          109 HYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  188 (507)
Q Consensus       109 ~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~  188 (507)
                      .      .+.+.+||+.+.+=..--+.+ +|   .+..++.-++++|+.-|       .+.++.+|+.+.+-..--..+.
T Consensus        84 ~------~~~v~viD~~t~~v~~~i~~g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~  146 (266)
T 2iwa_A           84 L------KNIGFIYDRRTLSNIKNFTHQ-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKY  146 (266)
T ss_dssp             T------CSEEEEEETTTTEEEEEEECC-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEE
T ss_pred             c------CCEEEEEECCCCcEEEEEECC-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECC
Confidence            2      446999999987543322222 22   33445555668888653       4579999999876443322222


Q ss_pred             CCCCCC-CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeecCCC-------CCCCcceEEEEE---CCEE
Q 010571          189 PPAPRY-DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDL-------VTGRAGHAGITI---DENW  256 (507)
Q Consensus       189 ~p~~r~-~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~-------p~~r~~~~~~~~---~~~l  256 (507)
                      .+.+.. -..+... ++.+|+--.     ..++|.+.|+.+++-.. +...+..       .........+.+   ++++
T Consensus       147 ~~~p~~~~nele~~-dg~lyvn~~-----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          147 NGHRVIRLNELEYI-NGEVWANIW-----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEET-----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             CCcccccceeEEEE-CCEEEEecC-----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence            222221 1233444 667886533     24789999999986433 2211100       011112233333   3578


Q ss_pred             EEEeccCCCCCcceEEEEEcCc
Q 010571          257 YIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~  278 (507)
                      ||.|+..     +.++..++..
T Consensus       221 fVTgk~~-----~~v~~i~l~~  237 (266)
T 2iwa_A          221 FVTGKLW-----PKLFEIKLHL  237 (266)
T ss_dssp             EEEETTC-----SEEEEEEEEE
T ss_pred             EEECCCC-----CeEEEEEEec
Confidence            8888743     3566666543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.62  E-value=0.045  Score=51.21  Aligned_cols=190  Identities=15%  Similarity=0.167  Sum_probs=97.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||..++.-...-..                  ......++.+  ++.+++.|+.+.   
T Consensus        76 ~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~s~~~d~---  129 (312)
T 4ery_A           76 DSNLLVSASDD-----KTLKIWDVSSGKCLKTLKG------------------HSNYVFCCNFNPQSNLIVSGSFDE---  129 (312)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTCCEEEEEEC------------------CSSCEEEEEECSSSSEEEEEETTS---
T ss_pred             CCCEEEEECCC-----CEEEEEECCCCcEEEEEcC------------------CCCCEEEEEEcCCCCEEEEEeCCC---
Confidence            45566666633     4588899887753322111                  1111122222  456666776532   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                         .+.+||+.+++-...-     +.......++.+  ++.+++.|+.+      ..+.+||+.+.+.........   .
T Consensus       130 ---~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~---~  192 (312)
T 4ery_A          130 ---SVRIWDVKTGKCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDD---N  192 (312)
T ss_dssp             ---CEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCSS---C
T ss_pred             ---cEEEEECCCCEEEEEe-----cCCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEeccC---C
Confidence               3889999887643322     111111222333  45667777653      358999998876544321111   1


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE-ECCEEEEEeccCCCCCcceE
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-IDENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~d~  271 (507)
                      .....+....++..++.|+.+     +.+.+||+.+..-...- .+............. .++.+++.|+.++     .+
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~i  261 (312)
T 4ery_A          193 PPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTY-TGHKNEKYCIFANFSVTGGKWIVSGSEDN-----LV  261 (312)
T ss_dssp             CCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEE-CSSCCSSSCCCEEEECSSSCEEEECCTTS-----CE
T ss_pred             CceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-EecCCceEEEEEEEEeCCCcEEEEECCCC-----EE
Confidence            111123333455566666654     46889999877543321 121111112222222 2456677766443     47


Q ss_pred             EEEEcCcCe
Q 010571          272 IVLNMTKLA  280 (507)
Q Consensus       272 ~~~d~~~~~  280 (507)
                      .++|+.+..
T Consensus       262 ~vwd~~~~~  270 (312)
T 4ery_A          262 YIWNLQTKE  270 (312)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCch
Confidence            889987765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=97.57  E-value=0.037  Score=58.64  Aligned_cols=196  Identities=12%  Similarity=-0.020  Sum_probs=97.8

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g~~p~~  192 (507)
                      ...++++|+.++.-..+..   ..........+.+  +++.++++..+... ....++.+|+.++ ....+.........
T Consensus       234 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVNRAQ-NECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             EEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEECTTS-CEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             eeEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeCCCC-CeeEEEEEECCCCceeeEEEEccCCCeE
Confidence            4579999999987655531   1111112222333  44444444333221 2457999999988 66665421110000


Q ss_pred             CCCceEEEEc--CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCE-EEEEeccCCCCC
Q 010571          193 RYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN-WYIVGGGDNNNG  267 (507)
Q Consensus       193 r~~~~~~~~~--~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~  267 (507)
                      .....++...  ++.+++.+..++   ...+|.++........+.. +    .......+.+  +++ |++.+. .....
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~-~----~~~v~~~~~~spdg~~l~~~~~-~~~~~  380 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK-G----EWEVTNFAGFDPKGTRLYFEST-EASPL  380 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC-S----SSCEEEEEEECTTSSEEEEEES-SSCTT
T ss_pred             CccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC-C----CeEEEeeeEEcCCCCEEEEEec-CCCCc
Confidence            0012334445  666655554432   3678888877766666521 1    1111122334  344 544443 32222


Q ss_pred             cceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571          268 CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       268 ~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                      ...+|.+|..+.....+...         . ....+.+..+...+++...+......++.+|+....
T Consensus       381 ~~~l~~~d~~~~~~~~l~~~---------~-~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          381 ERHFYCIDIKGGKTKDLTPE---------S-GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CBEEEEEETTCCCCEESCCS---------S-SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             eEEEEEEEcCCCCceeccCC---------C-ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            35789999888776655421         1 122233333333445554444445678888876543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.55  E-value=0.032  Score=54.93  Aligned_cols=266  Identities=13%  Similarity=0.036  Sum_probs=128.3

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      .+++||+.+.........+....+...-..+.+  ++.+|+.|+.     ...+.+||+.+++....-...         
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-----d~~v~~~d~~~~~~~~~~~~~---------  210 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-----ANAVHVFDLKTLAYKATVDLT---------  210 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-----GTEEEEEETTTCCEEEEEECS---------
T ss_pred             eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC-----CCEEEEEECCCceEEEEEcCC---------
Confidence            377888887776654311000011111111222  6778887763     246899999886543322111         


Q ss_pred             CCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEE
Q 010571           82 SGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~  157 (507)
                              ...-.+++..  ++.+|+.++..      ..+.+||+.+++.....     +.... ...+.+  ++..+++
T Consensus       211 --------~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~-----~~~~~-~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          211 --------GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKT-----DKIGL-PRGLLLSKDGKELYI  270 (433)
T ss_dssp             --------SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEEC-----CCCSE-EEEEEECTTSSEEEE
T ss_pred             --------CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEe-----cCCCC-ceEEEEcCCCCEEEE
Confidence                    1111222222  45677766432      35999999988654432     11111 222333  3444444


Q ss_pred             cCcCCCCC--ccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          158 GGEDRSRK--LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       158 GG~~~~~~--~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      ++......  ....+..||+.+.+-......   +  .....++...++ .+|+.++.+     +.+.+||+.+..-...
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~--~~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMDKEKLIDTIGP---P--GNKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETTTTEEEEEEEE---E--ECEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred             EECCCCccccCCCeEEEEECCCCcEEeeccC---C--CCcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEE
Confidence            44322211  134699999988765443211   1  111123333343 577776543     4789999987664432


Q ss_pred             eecCCCCCCCcceEEEEE--CCEEEEEeccCCCC----------CcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEE
Q 010571          235 EIKGDLVTGRAGHAGITI--DENWYIVGGGDNNN----------GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS  302 (507)
Q Consensus       235 ~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~----------~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~  302 (507)
                      -     +.... ...+.+  +++.+++++...+.          .-..++++|+.+..........        ......
T Consensus       341 ~-----~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--------~~~~~~  406 (433)
T 3bws_A          341 I-----PVFDK-PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--------NQPTGL  406 (433)
T ss_dssp             E-----ECSSS-EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--------SSEEEE
T ss_pred             e-----cCCCC-CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--------CCCceE
Confidence            1     11111 123333  34444444432210          0136899999887654432211        111222


Q ss_pred             EEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          303 AIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       303 ~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                      ...+++..|++.+..+    ..+.+|++.
T Consensus       407 ~~s~dg~~l~~~~~~d----~~i~v~~~~  431 (433)
T 3bws_A          407 DVSPDNRYLVISDFLD----HQIRVYRRD  431 (433)
T ss_dssp             EECTTSCEEEEEETTT----TEEEEEEET
T ss_pred             EEcCCCCEEEEEECCC----CeEEEEEec
Confidence            2334445555544322    467777664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.46  E-value=0.0078  Score=64.88  Aligned_cols=224  Identities=8%  Similarity=0.010  Sum_probs=124.5

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      .|.++||+.+++++.+... .++. ..-.+++.. ++.|++-..       ..+++||+.++.|........        
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~-~~~~-~~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~--------  489 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELE-KNEL-LDVRVFYEDKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSN--------  489 (781)
T ss_dssp             EEEEEECSSSCEEEECCST-TTCC-CCEEEEEECTTSEEEEEET-------TEEEEEESSSSSCCEEECTTT--------
T ss_pred             CCEEEEcCCCCcEEEeccC-CCCC-CeEEEEEECCCCCEEEEEC-------CceEEEeCCCCeEEecccCcc--------
Confidence            5788999999999887632 1111 111222222 456665321       458999999999887654321        


Q ss_pred             CCccCCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEc
Q 010571           82 SGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFG  158 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~G  158 (507)
                         ...+... -.+++. -++.|++.. ..      .-+++||+.++++........+|...  ..++..  ++.|++-.
T Consensus       490 ---~~~~~~~-i~~i~~d~~g~lWigt-~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~--i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          490 ---SQLLENF-VRSIAQDSEGRFWIGT-FG------GGVGIYTPDMQLVRKFNQYEGFCSNT--INQIYRSSKGQMWLAT  556 (781)
T ss_dssp             ---SSCSCSC-EEEEEECTTCCEEEEE-SS------SCEEEECTTCCEEEEECTTTTCSCSC--EEEEEECTTSCEEEEE
T ss_pred             ---cccccce-eEEEEEcCCCCEEEEE-cC------CCEEEEeCCCCeEEEccCCCCCCCCe--eEEEEECCCCCEEEEE
Confidence               0111111 122222 256677642 11      12889999999998876422232221  122222  45677643


Q ss_pred             CcCCCCCccCcE-EEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeec
Q 010571          159 GEDRSRKLLNDV-HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK  237 (507)
Q Consensus       159 G~~~~~~~~~~~-~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~  237 (507)
                      .        +.+ .+||+.+.++........+|... ..+++...++.|++.+.       +-+.+||+.+..+......
T Consensus       557 ~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~  620 (781)
T 3v9f_A          557 G--------EGLVCFPSARNFDYQVFQRKEGLPNTH-IRAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHS  620 (781)
T ss_dssp             T--------TEEEEESCTTTCCCEEECGGGTCSCCC-CCEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGG
T ss_pred             C--------CCceEEECCCCCcEEEccccCCCCCce-EEEEEECCCCCEEEEcC-------CceEEEECCCCceEEeccc
Confidence            2        246 89999998888776543444333 24555555676777542       4589999999998886544


Q ss_pred             CCCCCCCcceEEEEE-CCEEEEEeccCCCCCcceEEEEEcCc
Q 010571          238 GDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~  278 (507)
                      ..++...+...++.. .+.-+.|||.+      -+..||+..
T Consensus       621 dGl~~~~f~~~~~~~~~~G~l~~g~~~------Gl~~f~p~~  656 (781)
T 3v9f_A          621 NNIPQGSFISGCVTKDHNGLIYFGSIN------GLCFFNPDI  656 (781)
T ss_dssp             GTCCSSCEEEEEEEECTTSCEEEEETT------EEEEECSCC
T ss_pred             CCccccccccCceEECCCCEEEEECCC------ceEEEChhh
Confidence            344544433333333 33344456643      245666543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=97.44  E-value=0.017  Score=54.51  Aligned_cols=267  Identities=9%  Similarity=-0.039  Sum_probs=130.4

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCce-eEeeeccccccCcc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAW-SNLRLETELDADKT   79 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W-~~~~~~~~~~~~~~   79 (507)
                      ..+..||+.+.+......   .+....  +++..  +..+|+.+...     ..+++||+.++.. .......       
T Consensus        20 ~~v~~~d~~~~~~~~~~~---~~~~~~--~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~-------   82 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQIT---LGYDFV--DTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEG-------   82 (331)
T ss_dssp             TEEEEEETTTCCEEEEEE---CCCCEE--EEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEEEEEEEC-------
T ss_pred             CeEEEEeCcccceeeeEE---ccCCcc--eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeEEecccC-------
Confidence            446789999888865542   111111  33332  44577776522     3799999998875 2222211       


Q ss_pred             ccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEE
Q 010571           80 EDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLI  155 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~  155 (507)
                                ....++++..  ++.|| .+.....   ...+.+||+.+++.......+..     .+.++.- ++ .+|
T Consensus        83 ----------~~~~~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~  143 (331)
T 3u4y_A           83 ----------QSSMADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPYD-----AVGIAISPNGNGLI  143 (331)
T ss_dssp             ----------SSCCCCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCTT-----EEEEEECTTSSCEE
T ss_pred             ----------CCCccceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCCC-----ccceEECCCCCEEE
Confidence                      1111212222  44566 3322211   12699999998876554322111     1233332 33 577


Q ss_pred             EEcCcCCCCCccCc-EEEEEcCCCc-EEEeecCCCCCCCCCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCCCcE-
Q 010571          156 IFGGEDRSRKLLND-VHFLDLETMT-WDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEW-  231 (507)
Q Consensus       156 ~~GG~~~~~~~~~~-~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~~~W-  231 (507)
                      +.+..      .+. +..|++.... ...... ...+.......++...++ .+|+.+..+     +.+.+||+.+... 
T Consensus       144 ~~~~~------~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~-----~~v~v~d~~~~~~~  211 (331)
T 3u4y_A          144 LIDRS------SANTVRRFKIDADGVLFDTGQ-EFISGGTRPFNITFTPDGNFAFVANLIG-----NSIGILETQNPENI  211 (331)
T ss_dssp             EEEET------TTTEEEEEEECTTCCEEEEEE-EEECSSSSEEEEEECTTSSEEEEEETTT-----TEEEEEECSSTTSC
T ss_pred             EEecC------CCceEEEEEECCCCcEeecCC-ccccCCCCccceEECCCCCEEEEEeCCC-----CeEEEEECCCCccc
Confidence            66543      234 7777765422 111100 001111222344444454 466665432     5699999987764 


Q ss_pred             --E-eeeecCCCCCCCcceEEEEE-CCE-EEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCC---CCCCCCCceEEE
Q 010571          232 --S-QPEIKGDLVTGRAGHAGITI-DEN-WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN---PLASEGLSVCSA  303 (507)
Q Consensus       232 --~-~~~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~---p~~~~~~~~~~~  303 (507)
                        . .+.. +     .....++.- +++ +|+....     .+.++++|+.+.....+...+...   +.+.... ....
T Consensus       212 ~~~~~~~~-~-----~~~~~~~~spdg~~l~v~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  279 (331)
T 3u4y_A          212 TLLNAVGT-N-----NLPGTIVVSRDGSTVYVLTES-----TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA-NQMA  279 (331)
T ss_dssp             EEEEEEEC-S-----SCCCCEEECTTSSEEEEECSS-----EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC-CCEE
T ss_pred             ceeeeccC-C-----CCCceEEECCCCCEEEEEEcC-----CCEEEEEECCCCceeeecccccccccCCCCcccc-cceE
Confidence              2 2211 1     111122222 444 5555431     235889999988775554332211   1111111 1233


Q ss_pred             EEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          304 IIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       304 ~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      ..+++..|++.++.    .+.+.++|+...
T Consensus       280 ~spdg~~l~v~~~~----~~~v~v~d~~~~  305 (331)
T 3u4y_A          280 LNKTETKLFISANI----SRELKVFTISGK  305 (331)
T ss_dssp             ECTTSSEEEEEETT----TTEEEEEETTSC
T ss_pred             ECCCCCEEEEecCC----CCcEEEEEecCC
Confidence            44555677776553    356888887643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.43  E-value=0.027  Score=54.62  Aligned_cols=225  Identities=16%  Similarity=0.084  Sum_probs=118.5

Q ss_pred             CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCC
Q 010571           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD  115 (507)
Q Consensus        38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  115 (507)
                      +.+|+.|+.+     ..+.++|+.+++-...-...                 .. -.+++..  +..||+.|+..     
T Consensus         2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~-----------------~~-~~~~~~s~dg~~l~~~~~~d-----   53 (391)
T 1l0q_A            2 TFAYIANSES-----DNISVIDVTSNKVTATIPVG-----------------SN-PMGAVISPDGTKVYVANAHS-----   53 (391)
T ss_dssp             EEEEEEETTT-----TEEEEEETTTTEEEEEEECS-----------------SS-EEEEEECTTSSEEEEEEGGG-----
T ss_pred             CEEEEEcCCC-----CEEEEEECCCCeEEEEeecC-----------------CC-cceEEECCCCCEEEEECCCC-----
Confidence            3567777633     46899999988654432211                 11 1222222  34677776543     


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                       ..+.+||+.+++......   .+.   ....+.+   +..||+.|..      .+.+.+||+.+++.......+     
T Consensus        54 -~~i~v~d~~~~~~~~~~~---~~~---~v~~~~~spdg~~l~~~~~~------~~~v~v~d~~~~~~~~~~~~~-----  115 (391)
T 1l0q_A           54 -NDVSIIDTATNNVIATVP---AGS---SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKTG-----  115 (391)
T ss_dssp             -TEEEEEETTTTEEEEEEE---CSS---SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEECS-----
T ss_pred             -CeEEEEECCCCeEEEEEE---CCC---CccceEECCCCCEEEEEECC------CCEEEEEECCCCeEEEEEeCC-----
Confidence             359999999887655432   111   2222333   3356666543      246999999988765543211     


Q ss_pred             CCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCcc
Q 010571          193 RYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQ  269 (507)
Q Consensus       193 r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~  269 (507)
                      ....+++...+ ..+|+.++.+     +.+++||+.+.........+.     ....++.. ++ .+++.++.+     .
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~-----~  180 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDS-----M  180 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTT-----T
T ss_pred             CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCC-----C
Confidence            11233444344 4466666543     479999998887655322111     11222222 33 465665432     3


Q ss_pred             eEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          270 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       270 d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      .++++|+.+..........        .........+++..|++.+..  .....++++|+...
T Consensus       181 ~v~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~g~~l~~~~~~--~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKVE--------AAPSGIAVNPEGTKAYVTNVD--KYFNTVSMIDTGTN  234 (391)
T ss_dssp             EEEEEETTTTEEEEEEECS--------SEEEEEEECTTSSEEEEEEEC--SSCCEEEEEETTTT
T ss_pred             EEEEEECCCCeEEEEEecC--------CCccceEECCCCCEEEEEecC--cCCCcEEEEECCCC
Confidence            5889999887654432211        111222333444556555421  12456778887543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.40  E-value=0.081  Score=51.61  Aligned_cols=263  Identities=11%  Similarity=0.088  Sum_probs=129.1

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      ..+++||+.+........   .+....-.+++.. ++.+++.|+.+     ..+.+||+.++.....-..          
T Consensus       113 ~~v~lw~~~~~~~~~~~~---~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~----------  174 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAE---TDESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQTKLRTMAG----------  174 (401)
T ss_dssp             TEEEEEETTTCCEEEEEE---CCTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECC----------
T ss_pred             CeEEEeeCCCCcEeEeee---cCCCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCeEEEEecC----------
Confidence            345677877777665542   2112222222222 45566666633     4688999987754332211          


Q ss_pred             CCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcC
Q 010571           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGG  159 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG  159 (507)
                              ......++..++.+++.|+.+      ..+.+||+.+..-...... .   ......++.+  ++.+++.|+
T Consensus       175 --------~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          175 --------HQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQ-G---HSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             --------CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEE-C---CSSCEEEEEECTTSSEEEEEE
T ss_pred             --------CCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEc-C---CCCCeeEEEEcCCCCEEEEEe
Confidence                    122233344466677777643      3588899874332221111 1   1111222223  456777776


Q ss_pred             cCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecC
Q 010571          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  238 (507)
Q Consensus       160 ~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  238 (507)
                      .+      +.+.+||+.+..-...-.    .....-.+++... +..+++.||...   -..+.+||+.+..-...-. .
T Consensus       237 ~d------~~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~ll~~~~gs~---d~~i~i~d~~~~~~~~~~~-~  302 (401)
T 4aez_A          237 ND------NVVQIWDARSSIPKFTKT----NHNAAVKAVAWCPWQSNLLATGGGTM---DKQIHFWNAATGARVNTVD-A  302 (401)
T ss_dssp             TT------SCEEEEETTCSSEEEEEC----CCSSCCCEEEECTTSTTEEEEECCTT---TCEEEEEETTTCCEEEEEE-C
T ss_pred             CC------CeEEEccCCCCCccEEec----CCcceEEEEEECCCCCCEEEEecCCC---CCEEEEEECCCCCEEEEEe-C
Confidence            53      359999998765433221    1111222333333 334677664211   1468999998776443211 1


Q ss_pred             CCCCCCcceEEEEE--CCE-EEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEc
Q 010571          239 DLVTGRAGHAGITI--DEN-WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFG  315 (507)
Q Consensus       239 ~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~G  315 (507)
                          . .....+.+  ++. +++.+|...    ..+.+||+.+.....+..+....     +...+....+++ .+++.|
T Consensus       303 ----~-~~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~~h~-----~~v~~~~~s~dg-~~l~s~  367 (401)
T 4aez_A          303 ----G-SQVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIPAHD-----TRVLYSALSPDG-RILSTA  367 (401)
T ss_dssp             ----S-SCEEEEEECSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEECCS-----SCCCEEEECTTS-SEEEEE
T ss_pred             ----C-CcEEEEEECCCCCeEEEEeecCC----CcEEEEecCCccceeEEEecCCC-----CCEEEEEECCCC-CEEEEE
Confidence                1 11233333  344 444434332    25888898887666554332211     111222233333 455556


Q ss_pred             ccCCCcCCeEEEEECCCCC
Q 010571          316 GYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       316 G~~~~~~~~v~~~~~~~~~  334 (507)
                      |.+    ..+..+++....
T Consensus       368 ~~d----g~i~iw~~~~~~  382 (401)
T 4aez_A          368 ASD----ENLKFWRVYDGD  382 (401)
T ss_dssp             CTT----SEEEEEECCC--
T ss_pred             eCC----CcEEEEECCCCc
Confidence            644    467788876543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.40  E-value=0.059  Score=58.09  Aligned_cols=269  Identities=12%  Similarity=0.068  Sum_probs=139.5

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCC----ccccceEEEE-CCE-EEEEcCCCCCccCCceEEEECCCCceeEeeecccccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPS----PRYKHAAAVF-DQK-LYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~----~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~   76 (507)
                      .|+++||+.+..+.........+.    ...-++++.. ++. |++ |..     ...+++||+.++.+........   
T Consensus       377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~-----~~Gl~~~d~~~~~~~~~~~~~~---  447 (795)
T 4a2l_A          377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTH-----AGGLSILHRNSGQVENFNQRNS---  447 (795)
T ss_dssp             SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EET-----TTEEEEEETTTCCEEEECTTTS---
T ss_pred             CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeC-----cCceeEEeCCCCcEEEeecCCC---
Confidence            488899999999988763210111    1112233333 455 555 321     2358999999998877653210   


Q ss_pred             CccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC-CCCcccceEEEE--CC
Q 010571           77 DKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV-PVARGGHSVTLV--GS  152 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~-p~~r~~~~~~~~--~~  152 (507)
                               . .+...-.+++.. ++.|++...        .-+++||+.+++|......... +.......+...  ++
T Consensus       448 ---------~-l~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          448 ---------Q-LVNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             ---------C-CSCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             ---------C-cCCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC
Confidence                     1 111111222222 466776432        1288999999999887532100 111111122222  35


Q ss_pred             EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecC---CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          153 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT---QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~---g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      .|++...        +.+++||+.+.++ .....   ..++ .....+++...++.|++...       +-+++||+.+.
T Consensus       510 ~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~-~~~i~~i~~d~~g~lWigT~-------~Gl~~~d~~~~  572 (795)
T 4a2l_A          510 RLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVT-KLFTNCIYEASNGIIWVGTR-------EGFYCFNEKDK  572 (795)
T ss_dssp             CEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGG-GSCEEEEEECTTSCEEEEES-------SCEEEEETTTT
T ss_pred             CEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCC-CCeeEEEEECCCCCEEEEeC-------CCceeECCCCC
Confidence            6776432        2499999988888 44311   0111 11112233334566776432       24899999999


Q ss_pred             cEEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCc
Q 010571          230 EWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE  308 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~  308 (507)
                      .+........+|.... .+++.- ++.|++.+.       +.+..||+.+.++.......+.   +.......++....+
T Consensus       573 ~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dGl---~~~~f~~~~~~~~~~  641 (795)
T 4a2l_A          573 QIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDGL---QSNQFNTASYCRTSV  641 (795)
T ss_dssp             EEEEECGGGTCSCSCE-EEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGTC---SCSCEEEEEEEECTT
T ss_pred             cEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCCC---ccccCccCceeECCC
Confidence            8887643333443322 222222 457777642       2478999999988876543322   111222233344444


Q ss_pred             eEEEEEcccCCCcCCeEEEEECCC
Q 010571          309 HHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       309 ~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      +.|++ ||.+     -+..|++..
T Consensus       642 G~l~~-g~~~-----Gl~~~~p~~  659 (795)
T 4a2l_A          642 GQMYF-GGIN-----GITTFRPEL  659 (795)
T ss_dssp             SCEEE-EETT-----EEEEECGGG
T ss_pred             CeEEE-ecCC-----ceEEEcHHH
Confidence            45544 6643     366666643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.39  E-value=0.059  Score=53.09  Aligned_cols=242  Identities=10%  Similarity=0.064  Sum_probs=122.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      +..+.+.+....+.....++++|+....-..+....                 ......+..-+++.+++++....   .
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~-----------------~~v~~~~~Spdg~~la~~s~~~~---~  202 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-----------------QPLMSPAWSPDGSKLAYVTFESG---R  202 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-----------------SCEEEEEECTTSSEEEEEECTTS---S
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC-----------------CcceeeEEcCCCCEEEEEEecCC---C
Confidence            445444443222222367899998765544443211                 11111111225555555554322   2


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                      ..++++|+.+++...+.   ..+.   ...+..+  ++ .|++.+..+.    ...++.+|+.+++...+...     ..
T Consensus       203 ~~i~~~d~~tg~~~~l~---~~~~---~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~-----~~  267 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVA---SFPR---HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG-----RS  267 (415)
T ss_dssp             CEEEEEETTTCCEEEEE---CCSS---CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCC-----SS
T ss_pred             cEEEEEECCCCcEEEee---cCCC---cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCC-----CC
Confidence            46999999999877664   2221   1222333  34 4555554332    34699999998887655421     11


Q ss_pred             CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceE
Q 010571          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       194 ~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~  271 (507)
                      .....+...++..+++++..+.  ...++.+|+.++.-..+..     ... ....+.+  +++.+++++...  ....+
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g--~~~i~~~d~~~~~~~~l~~-----~~~-~~~~~~~spdG~~l~~~~~~~--g~~~i  337 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAG--RPQVYKVNINGGAPQRITW-----EGS-QNQDADVSSDGKFMVMVSSNG--GQQHI  337 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTS--SCEEEEEETTSSCCEECCC-----SSS-EEEEEEECTTSSEEEEEEECS--SCEEE
T ss_pred             cccceEECCCCCEEEEEECCCC--CcEEEEEECCCCCEEEEec-----CCC-cccCeEECCCCCEEEEEECcC--CceEE
Confidence            1122333345544555543211  2479999998876544321     111 1122333  455555554332  13478


Q ss_pred             EEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       272 ~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                      +++|+.+.....+...         .........+++ ..+++++.++. ...+|.+|+....
T Consensus       338 ~~~d~~~~~~~~l~~~---------~~~~~~~~spdg-~~l~~~s~~~~-~~~l~~~d~~g~~  389 (415)
T 2hqs_A          338 AKQDLATGGVQVLSST---------FLDETPSLAPNG-TMVIYSSSQGM-GSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEETTTCCEEECCCS---------SSCEEEEECTTS-SEEEEEEEETT-EEEEEEEETTSCC
T ss_pred             EEEECCCCCEEEecCC---------CCcCCeEEcCCC-CEEEEEEcCCC-ccEEEEEECCCCc
Confidence            9999998877654321         111222233344 34455554321 3478999986543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=97.35  E-value=0.0069  Score=55.78  Aligned_cols=233  Identities=8%  Similarity=-0.037  Sum_probs=117.9

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCC-CceeEeeeccccccCcc
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t-~~W~~~~~~~~~~~~~~   79 (507)
                      +...+++|+.+.....+...     ...-.+++.. ++..+++++      ...++++|+.+ +....+....       
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~-------   82 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQT-----PELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF-------   82 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEE-----SSCCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTT-------
T ss_pred             ceeEEEEeCCCCceeeeccC-----CcceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEecccc-------
Confidence            34578899988887765521     1112222222 455555554      24799999998 7665543221       


Q ss_pred             ccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEE
Q 010571           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIF  157 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~  157 (507)
                              ...........-+++.+++++....  ....++.++..++.-..+..   .. .  ...++.. ++ .|++.
T Consensus        83 --------~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~---~~-~--~~~~~~spdg~~l~~~  146 (297)
T 2ojh_A           83 --------ATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK---NL-P--SYWHGWSPDGKSFTYC  146 (297)
T ss_dssp             --------CCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS---SS-S--EEEEEECTTSSEEEEE
T ss_pred             --------ccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec---CC-C--ccceEECCCCCEEEEE
Confidence                    0111122222235555555553322  24569999988877555431   11 1  1222222 33 55555


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeC-CCCCcCCCcEEEEECCCCcEEeeee
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG-~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      ++.+.    ...++.+++.+.....+...     ......+....++..+++++ .++   ...+|.+++.......+..
T Consensus       147 ~~~~~----~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          147 GIRDQ----VFDIYSMDIDSGVETRLTHG-----EGRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EEETT----EEEEEEEETTTCCEEECCCS-----SSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCC
T ss_pred             ECCCC----ceEEEEEECCCCcceEcccC-----CCccccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEec
Confidence            54432    22577777877776555321     11112233334444444443 222   3568888877776665421


Q ss_pred             cCCCCCCCcceEEEEE--CCEEEEEeccCCCC------CcceEEEEEcCcCeeEEecc
Q 010571          237 KGDLVTGRAGHAGITI--DENWYIVGGGDNNN------GCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~------~~~d~~~~d~~~~~W~~~~~  286 (507)
                            .......+.+  +++.+++++.....      ....++++|+.+.....+..
T Consensus       215 ------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  266 (297)
T 2ojh_A          215 ------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD  266 (297)
T ss_dssp             ------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE
T ss_pred             ------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec
Confidence                  1112222333  45555555533221      12468999998887766543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.35  E-value=0.023  Score=61.22  Aligned_cols=269  Identities=10%  Similarity=-0.008  Sum_probs=140.8

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccc
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~   80 (507)
                      +.|+++||+....+..+.....++... -++++.. ++.|++ |..     ...+++||+.++.+.......        
T Consensus       382 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~d~~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~~--------  446 (781)
T 3v9f_A          382 GGGINVFENGKRVAIYNKENRELLSNS-VLCSLKDSEGNLWF-GTY-----LGNISYYNTRLKKFQIIELEK--------  446 (781)
T ss_dssp             SSCEEEEETTEEEEECC-----CCCSB-EEEEEECTTSCEEE-EET-----TEEEEEECSSSCEEEECCSTT--------
T ss_pred             CCcEEEEECCCCeEEEccCCCCCCCcc-eEEEEECCCCCEEE-Eec-----cCCEEEEcCCCCcEEEeccCC--------
Confidence            357888998877776553211111111 1222222 556666 321     245899999999887765311        


Q ss_pred             cCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEE
Q 010571           81 DSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~  157 (507)
                             .....-.+++.. ++.|++...        .-+++||+.+++|.........+.......+...  ++.|++-
T Consensus       447 -------~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig  511 (781)
T 3v9f_A          447 -------NELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG  511 (781)
T ss_dssp             -------TCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE
T ss_pred             -------CCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE
Confidence                   011122233332 567776431        2389999999998877532111111111122222  3566664


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcE-EEEECCCCcEEeeee
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL-HVLDLQTNEWSQPEI  236 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i-~~~d~~~~~W~~~~~  236 (507)
                      . .      .+.+++||+.+.++........+|... -.+++...++.|++...       +-+ .+||+.+..+.....
T Consensus       512 t-~------~~Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~~~~  576 (781)
T 3v9f_A          512 T-F------GGGVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG-------EGLVCFPSARNFDYQVFQR  576 (781)
T ss_dssp             E-S------SSCEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET-------TEEEEESCTTTCCCEEECG
T ss_pred             E-c------CCCEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC-------CCceEEECCCCCcEEEccc
Confidence            2 1      124899999999988876432233221 12233334566776432       236 889998888877644


Q ss_pred             cCCCCCCCcceEEEEE-CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEc
Q 010571          237 KGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFG  315 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~G  315 (507)
                      ...+|.... .+++.- ++.|++.+.       +.+.+||+.+..+.......+..   ...+...++....++.|+ ||
T Consensus       577 ~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~~~~dGl~---~~~f~~~~~~~~~~G~l~-~g  644 (781)
T 3v9f_A          577 KEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTYDHSNNIP---QGSFISGCVTKDHNGLIY-FG  644 (781)
T ss_dssp             GGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEECGGGTCC---SSCEEEEEEEECTTSCEE-EE
T ss_pred             cCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEecccCCcc---ccccccCceEECCCCEEE-EE
Confidence            333443332 233332 466776532       24789999999888765433321   112222333444444444 46


Q ss_pred             ccCCCcCCeEEEEECCC
Q 010571          316 GYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       316 G~~~~~~~~v~~~~~~~  332 (507)
                      |.+     -+..|++..
T Consensus       645 ~~~-----Gl~~f~p~~  656 (781)
T 3v9f_A          645 SIN-----GLCFFNPDI  656 (781)
T ss_dssp             ETT-----EEEEECSCC
T ss_pred             CCC-----ceEEEChhh
Confidence            643     366777653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.33  E-value=0.094  Score=49.12  Aligned_cols=187  Identities=17%  Similarity=0.072  Sum_probs=98.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++..........                .......+.+  ++.+++.|+.+    
T Consensus       108 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~d----  162 (337)
T 1gxr_A          108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTS----------------SAPACYALAISPDSKVCFSCCSD----  162 (337)
T ss_dssp             TSSEEEEEESS-----SEEEEEECCCC--EEEEEEEC----------------SSSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEEcCC-----CcEEEEECCCCCcceeeeccc----------------CCCceEEEEECCCCCEEEEEeCC----
Confidence            45566666532     468899998887544433221                1111222222  55666666643    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                        ..+.+||+.+++.....   ...  .....++.+  ++..++.|+.+      ..+..||+.+.+-.....   .  .
T Consensus       163 --g~v~~~d~~~~~~~~~~---~~~--~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~---~--~  224 (337)
T 1gxr_A          163 --GNIAVWDLHNQTLVRQF---QGH--TDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---F--T  224 (337)
T ss_dssp             --SCEEEEETTTTEEEEEE---CCC--SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---C--S
T ss_pred             --CcEEEEeCCCCceeeee---ecc--cCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec---C--C
Confidence              23889999887644332   111  111222333  45566666642      369999998776443321   1  1


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcce
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQE  270 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d  270 (507)
                      ....+++...++.++++|+.+     ..+.+||+.+..-..+.  +    .......+.+  ++.+++.|+.++     .
T Consensus       225 ~~v~~~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~--~----~~~~v~~~~~~~~~~~l~~~~~dg-----~  288 (337)
T 1gxr_A          225 SQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLH--L----HESCVLSLKFAYCGKWFVSTGKDN-----L  288 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEEC--C----CSSCEEEEEECTTSSEEEEEETTS-----E
T ss_pred             CceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCCeEEEc--C----CccceeEEEECCCCCEEEEecCCC-----c
Confidence            112334444555577777654     45889998876543321  1    1111222333  456777776432     5


Q ss_pred             EEEEEcCcCeeE
Q 010571          271 TIVLNMTKLAWS  282 (507)
Q Consensus       271 ~~~~d~~~~~W~  282 (507)
                      +.+||+.+..-.
T Consensus       289 i~~~~~~~~~~~  300 (337)
T 1gxr_A          289 LNAWRTPYGASI  300 (337)
T ss_dssp             EEEEETTTCCEE
T ss_pred             EEEEECCCCeEE
Confidence            788898776543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.33  E-value=0.029  Score=57.62  Aligned_cols=272  Identities=13%  Similarity=0.087  Sum_probs=134.1

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEEC--CCCceeEeeeccccccCccc
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDL--RSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~--~t~~W~~~~~~~~~~~~~~~   80 (507)
                      +..+|+.+.+-...-..+     ..-|++++.  +..||+.+. .     +.+.+||+  .+++-...-..+        
T Consensus       161 V~v~D~~t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~t~~~~~~i~~g--------  221 (543)
T 1nir_A          161 IALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGR-D-----ARIDMIDLWAKEPTKVAEIKIG--------  221 (543)
T ss_dssp             EEEEETTTCCEEEEEECS-----TTEEEEEECTTSCEEEEEET-T-----SEEEEEETTSSSCEEEEEEECC--------
T ss_pred             EEEEECCCceEEEEEecC-----cccceEEECCCCCEEEEECC-C-----CeEEEEECcCCCCcEEEEEecC--------
Confidence            556777766544322111     113555443  456666654 1     67999999  665432211111        


Q ss_pred             cCCccCCCCCccceeeEEE----CC-EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC--------CCCcccceE
Q 010571           81 DSGLLEVLPPMSDHCMVKW----GT-KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--------PVARGGHSV  147 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~----~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~--------p~~r~~~~~  147 (507)
                               ....+.+..-    ++ .||+. ...     .+.+.++|..+.+-...-....+        |.++.....
T Consensus       222 ---------~~p~~va~sp~~~~dg~~l~v~-~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          222 ---------IEARSVESSKFKGYEDRYTIAG-AYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             ---------SEEEEEEECCSTTCTTTEEEEE-EEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             ---------CCcceEEeCCCcCCCCCEEEEE-Ecc-----CCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence                     1112223332    44 45544 322     23588889888765443221111        111221111


Q ss_pred             EEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcE-EEEEeCCCCCcCCCcEEEEE
Q 010571          148 TLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLD  225 (507)
Q Consensus       148 ~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~i~GG~~~~~~~~~i~~~d  225 (507)
                      ..- +..+|+...      ..+.+..+|..+.+-..+..   .+..+.-+.++...++. +|+.+..     .+.+.++|
T Consensus       287 ~s~~~~~~~vs~~------~~g~i~vvd~~~~~~l~~~~---i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D  352 (543)
T 1nir_A          287 ASHEHPEFIVNVK------ETGKVLLVNYKDIDNLTVTS---IGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVID  352 (543)
T ss_dssp             ECSSSSEEEEEET------TTTEEEEEECTTSSSCEEEE---EECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEE
T ss_pred             ECCCCCEEEEEEC------CCCeEEEEEecCCCcceeEE---eccCcCccCceECCCCCEEEEEecC-----CCeEEEEE
Confidence            112 335554432      14579999987754222111   11233334455555554 4444322     26788999


Q ss_pred             CCCCcEEeeeecCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCcceEEEEEcCcC-----eeEEeccCCCCCCCCCCCC
Q 010571          226 LQTNEWSQPEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNNNGCQETIVLNMTKL-----AWSILTSVKGRNPLASEGL  298 (507)
Q Consensus       226 ~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~d~~~~d~~~~-----~W~~~~~~~~~~p~~~~~~  298 (507)
                      +.+++-...-..+..|.+..+.. +.. + +.+|+.+....    +.+-++|+.+.     .|+.+..++...     +.
T Consensus       353 ~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~~~v~~l~~~g-----~~  422 (543)
T 1nir_A          353 SKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAWKKVAELQGQG-----GG  422 (543)
T ss_dssp             TTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSC-----SC
T ss_pred             CCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcCeEEEEEEcCC-----CC
Confidence            99987655322345555433322 223 2 56777654221    25778887762     377766554321     11


Q ss_pred             ceEEEEEcCceEEEEEcccCC--CcCCeEEEEECCCCC
Q 010571          299 SVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRD  334 (507)
Q Consensus       299 ~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~~~~~~~~  334 (507)
                      .......++..+|++-.-.+.  .....|.+||+.+..
T Consensus       423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence            223334555667777431111  135689999998765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.33  E-value=0.013  Score=53.37  Aligned_cols=201  Identities=11%  Similarity=-0.051  Sum_probs=116.8

Q ss_pred             cceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEE
Q 010571           92 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH  171 (507)
Q Consensus        92 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~  171 (507)
                      +...+...++.||+..|...      .+..+|+.|++=..-.    ++....+..++..+++||+....      .+.++
T Consensus        56 ftqGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~------~~~v~  119 (268)
T 3nok_A           56 FTQGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT------EGLLF  119 (268)
T ss_dssp             CEEEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS------SCEEE
T ss_pred             ccceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc------CCEEE
Confidence            34666667999999988643      2889999998643321    23333444567778899998653      45799


Q ss_pred             EEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeecCCCCCCCcc-eEE
Q 010571          172 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAG-HAG  249 (507)
Q Consensus       172 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~-~~~  249 (507)
                      +||+.+.+-..--.     .+-.+.+++. .++.||+.-|      .+.++.+|+.+..-.. +.+ +..+.+... -.+
T Consensus       120 V~D~~Tl~~~~ti~-----~~~eGwGLt~-Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lNeL  186 (268)
T 3nok_A          120 TWSGMPPQRERTTR-----YSGEGWGLCY-WNGKLVRSDG------GTMLTFHEPDGFALVGAVQV-KLRGQPVELINEL  186 (268)
T ss_dssp             EEETTTTEEEEEEE-----CSSCCCCEEE-ETTEEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEE
T ss_pred             EEECCcCcEEEEEe-----CCCceeEEec-CCCEEEEECC------CCEEEEEcCCCCeEEEEEEe-CCCCccccccccc
Confidence            99999876543322     1223445554 4567898765      2689999999876544 322 122222111 123


Q ss_pred             EEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCC---C--CCCCCCc-eEEEEEcCceEEEEEcccCCCcCC
Q 010571          250 ITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN---P--LASEGLS-VCSAIIEGEHHLVAFGGYNGKYNN  323 (507)
Q Consensus       250 ~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~---p--~~~~~~~-~~~~~~~~~~~l~v~GG~~~~~~~  323 (507)
                      ...++.||+-- +    ..+++.++|+.+..-...-.+.+..   +  ....... -..+..+..+.|||.|-.    ..
T Consensus       187 e~~dG~lyanv-w----~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~----Wp  257 (268)
T 3nok_A          187 ECANGVIYANI-W----HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL----WP  257 (268)
T ss_dssp             EEETTEEEEEE-T----TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT----CS
T ss_pred             EEeCCEEEEEE-C----CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC----CC
Confidence            44588888532 1    2347999999998644332222100   0  0111222 233344456789987753    45


Q ss_pred             eEEEEEC
Q 010571          324 EVFVMRL  330 (507)
Q Consensus       324 ~v~~~~~  330 (507)
                      .+|...+
T Consensus       258 ~~~ev~~  264 (268)
T 3nok_A          258 RLFEVRL  264 (268)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEE
Confidence            5665543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.32  E-value=0.13  Score=49.56  Aligned_cols=212  Identities=13%  Similarity=0.084  Sum_probs=118.3

Q ss_pred             CCCeEeeCCCC--CeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCc
Q 010571            3 SGSWHLELPYD--LWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~   78 (507)
                      ..+++||+.+.  .|..-.. +     ....+.++.++.||+..+      ...++.||+.++.  |........     
T Consensus       113 g~l~a~d~~tG~~~W~~~~~-~-----~~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~-----  175 (376)
T 3q7m_A          113 AQVYALNTSDGTVAWQTKVA-G-----EALSRPVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPS-----  175 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECS-S-----CCCSCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-------
T ss_pred             CEEEEEECCCCCEEEEEeCC-C-----ceEcCCEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCc-----
Confidence            45789998755  4754331 1     112233456787777543      2469999998875  765432110     


Q ss_pred             cccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCc--------ccceEE
Q 010571           79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVAR--------GGHSVT  148 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r--------~~~~~~  148 (507)
                               ...+...+.+..++.||+. ..      ...+..||+.+++  |+...   ..|...        .....+
T Consensus       176 ---------~~~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~~~p~  236 (376)
T 3q7m_A          176 ---------LSLRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIWQQRI---SQATGSTEIDRLSDVDTTPV  236 (376)
T ss_dssp             ------------CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEEEEEC---CC-----------CCCCCCE
T ss_pred             ---------eeecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEEEEec---ccCCCCcccccccccCCCcE
Confidence                     1112233445557877763 21      2358999998774  66543   112111        123334


Q ss_pred             EECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEEC
Q 010571          149 LVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL  226 (507)
Q Consensus       149 ~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~  226 (507)
                      ..++.+|+.+.       ...+++||+.+++  |....     +    ......+.++.+|+....      ..++.||+
T Consensus       237 ~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~-----~----~~~~~~~~~~~l~~~~~~------g~l~~~d~  294 (376)
T 3q7m_A          237 VVNGVVFALAY-------NGNLTALDLRSGQIMWKREL-----G----SVNDFIVDGNRIYLVDQN------DRVMALTI  294 (376)
T ss_dssp             EETTEEEEECT-------TSCEEEEETTTCCEEEEECC-----C----CEEEEEEETTEEEEEETT------CCEEEEET
T ss_pred             EECCEEEEEec-------CcEEEEEECCCCcEEeeccC-----C----CCCCceEECCEEEEEcCC------CeEEEEEC
Confidence            56778887642       2369999998774  65432     1    112333446768876532      46999999


Q ss_pred             CCCc--EEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCe--eEE
Q 010571          227 QTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA--WSI  283 (507)
Q Consensus       227 ~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~--W~~  283 (507)
                      .++.  |+..    .. ..+...+.++.++.+|+...      ...++.||+.+.+  |+.
T Consensus       295 ~tG~~~w~~~----~~-~~~~~~~~~~~~~~l~v~~~------~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          295 DGGVTLWTQS----DL-LHRLLTSPVLYNGNLVVGDS------EGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TTCCEEEEEC----TT-TTSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEE
T ss_pred             CCCcEEEeec----cc-CCCcccCCEEECCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence            8875  7652    11 12222344556777776532      1258899988775  553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.26  E-value=0.061  Score=50.64  Aligned_cols=277  Identities=14%  Similarity=0.059  Sum_probs=123.6

Q ss_pred             CCCeEeeCC-CCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECC--CCceeEeeeccccccC
Q 010571            3 SGSWHLELP-YDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDAD   77 (507)
Q Consensus         3 ~~~~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~--t~~W~~~~~~~~~~~~   77 (507)
                      ..++.||+. ......+..   .+....-++++..  +..||+.+..     ...+.+|++.  ++++..+......   
T Consensus        15 ~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~---   83 (343)
T 1ri6_A           15 QQIHVWNLNHEGALTLTQV---VDVPGQVQPMVVSPDKRYLYVGVRP-----EFRVLAYRIAPDDGALTFAAESALP---   83 (343)
T ss_dssp             TEEEEEEECTTSCEEEEEE---EECSSCCCCEEECTTSSEEEEEETT-----TTEEEEEEECTTTCCEEEEEEEECS---
T ss_pred             CeEEEEEECCCCcEEEeee---EecCCCCceEEECCCCCEEEEeecC-----CCeEEEEEecCCCCceeeccccccC---
Confidence            345667664 445554432   1222222233333  4456655442     1457777776  7777766543310   


Q ss_pred             ccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCcccceEEEE--CCE
Q 010571           78 KTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLV--GSR  153 (507)
Q Consensus        78 ~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~  153 (507)
                                  ....+.+..-+ +.||+.+..      ...+.+||+.++. ......   .+....-+.++..  +..
T Consensus        84 ------------~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~  142 (343)
T 1ri6_A           84 ------------GSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDV---VEGLDGCHSANISPDNRT  142 (343)
T ss_dssp             ------------SCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEE---ECCCTTBCCCEECTTSSE
T ss_pred             ------------CCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCcccccccc---ccCCCCceEEEECCCCCE
Confidence                        11111112223 446665432      2347777774332 222221   1111112222222  336


Q ss_pred             EEEEcCcCCCCCccCcEEEEEcCC-CcEEEee--cCCCCCCCCCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECC--
Q 010571          154 LIIFGGEDRSRKLLNDVHFLDLET-MTWDAVE--VTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQ--  227 (507)
Q Consensus       154 l~~~GG~~~~~~~~~~~~~~d~~t-~~W~~~~--~~g~~p~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~--  227 (507)
                      +|+.+..      .+.+.+||+.+ ++.....  .. ..+....-..++...++ .+|+.+..+     +.+.+|++.  
T Consensus       143 l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~~-----~~i~~~~~~~~  210 (343)
T 1ri6_A          143 LWVPALK------QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKDP  210 (343)
T ss_dssp             EEEEEGG------GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESSCT
T ss_pred             EEEecCC------CCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCCC-----CEEEEEEecCC
Confidence            7665522      23699999987 6665432  11 11111111223343444 466665332     568888884  


Q ss_pred             CCcEEeeeecCCCCCC---CcceEEEEE--CC-EEEEEeccCCCCCcceEEEEEcC--cCeeEEeccCCCCCCCCCCCCc
Q 010571          228 TNEWSQPEIKGDLVTG---RAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMT--KLAWSILTSVKGRNPLASEGLS  299 (507)
Q Consensus       228 ~~~W~~~~~~~~~p~~---r~~~~~~~~--~~-~l~v~GG~~~~~~~~d~~~~d~~--~~~W~~~~~~~~~~p~~~~~~~  299 (507)
                      +..+.........|..   ......+.+  ++ .+|+.+..+     ..+.+||+.  +..+..+..++..      +..
T Consensus       211 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----~~i~v~d~~~~~~~~~~~~~~~~~------~~~  279 (343)
T 1ri6_A          211 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITVFSVSEDGSVLSKEGFQPTE------TQP  279 (343)
T ss_dssp             TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSCCEEEEEEEECS------SSC
T ss_pred             CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----CEEEEEEEcCCCCceEEeeeecCC------Ccc
Confidence            3444332221222221   122223444  23 465554322     357788877  5556655443321      111


Q ss_pred             eEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCC
Q 010571          300 VCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIP  336 (507)
Q Consensus       300 ~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~  336 (507)
                      ......+++..|++.++.++  .-.+|.+|+.+..+.
T Consensus       280 ~~~~~s~dg~~l~~~~~~~~--~v~v~~~d~~~g~~~  314 (343)
T 1ri6_A          280 RGFNVDHSGKYLIAAGQKSH--HISVYEIVGEQGLLH  314 (343)
T ss_dssp             CCEEECTTSSEEEEECTTTC--EEEEEEEETTTTEEE
T ss_pred             ceEEECCCCCEEEEecCCCC--eEEEEEEcCCCceee
Confidence            12233444556777654332  223555576555443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.24  E-value=0.21  Score=53.66  Aligned_cols=256  Identities=9%  Similarity=0.057  Sum_probs=131.2

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEE-ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAV-FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      .|.++||+.++.+..+......+.... .+++. -++.|++...       +.+++||+.++++..+....         
T Consensus       107 ~Gl~~yd~~~~~f~~~~~~~~~~~~~i-~~i~~d~~g~lwi~t~-------~gl~~~~~~~~~~~~~~~~~---------  169 (795)
T 4a2l_A          107 DGLSRYDEEKDIFQNFFYEKNGKHLQV-NGIEEISPEQLLISTP-------EGLIMFDIKESKFIDDSFST---------  169 (795)
T ss_dssp             SCEEEEETTTTEEEEECCEETTEECCC-CEEEEEETTEEEEEET-------TEEEEEETTTTEEECSSSCH---------
T ss_pred             CchheeCCCCCeEEeccccccCCCceE-EEEEECCCCCEEEEEC-------CceEEEECCCCEEEeccCCC---------
Confidence            578899999998887753111110001 22322 3677777532       45899999988776543210         


Q ss_pred             CCccCCCCCc-cceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE-ECCEEEEEcC
Q 010571           82 SGLLEVLPPM-SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGG  159 (507)
Q Consensus        82 ~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~l~~~GG  159 (507)
                            +... ....+...++.|++.. .      ..-++.||+.++++.....   .+....-.++.. -++.|++.. 
T Consensus       170 ------~~~~~i~~i~~d~~g~lwigt-~------~~Gl~~~~~~~~~~~~~~~---~~~~~~i~~i~~d~~g~lwigt-  232 (795)
T 4a2l_A          170 ------AMHKTIASTLYRQGDQIYIGT-S------TDGLYTYSITQKTFEKVIP---ILGTKQIQAILQQSPTRIWVAT-  232 (795)
T ss_dssp             ------HHHTCCEEEEEEETTEEEEEE-S------SSCEEEEETTTCCEEECC-------CCCEEEEEEEETTEEEEEE-
T ss_pred             ------CCCcceEEEEECCCCCEEEEE-C------CCCEEEEeCCCCeEEEecC---CCCCCeeEEEEEcCCCCEEEEE-
Confidence                  0011 1122223478888832 1      1138899999998877631   111111122222 356777642 


Q ss_pred             cCCCCCccCcEEEEEcCCCcEEEeecCCCCCC---CCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeee
Q 010571          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA---PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       160 ~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~---~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      .      .+.+++||+.+.++.........+.   ...-.+++...++.|+|.. .      +-+.+||+.+..+.....
T Consensus       233 ~------~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~------~Gl~~~~~~~~~~~~~~~  299 (795)
T 4a2l_A          233 E------GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-F------NDLNIYHEGTDSFASYSS  299 (795)
T ss_dssp             B------SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-S------SCEEEEETTTTEEEEECC
T ss_pred             C------CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-C------ChhheEcCCCCeEEEEec
Confidence            1      2359999999988887753211111   1112233333456577633 1      248899999999887643


Q ss_pred             cCCCCCCCc-ce-EEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEE
Q 010571          237 KGDLVTGRA-GH-AGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLV  312 (507)
Q Consensus       237 ~~~~p~~r~-~~-~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~  312 (507)
                      ....+.... .. .+...  ++.|+|- ...     .-+..|++.+..+..+...+..  .........++..+.++.|+
T Consensus       300 ~~~~~~~l~~~~i~~i~~D~~g~lWig-t~~-----~Gl~~~~~~~~~~~~~~~~~~~--~~l~~~~V~~i~~d~~g~lW  371 (795)
T 4a2l_A          300 NPVENGSLSQRSVRSIFMDSQGGMWLG-TYF-----GGLNYYHPIRNRFKNIRNIPYK--NSLSDNVVSCIVEDKDKNLW  371 (795)
T ss_dssp             CTTSTTSCSSSCEEEEEECTTSCEEEE-ESS-----SCEEEECGGGGSSEEECCCTTS--SSCSCSSEEEEEECTTSCEE
T ss_pred             CCCCCCCCCCCcEEEEEEeCCcCEEEE-ECC-----CCeEEeCCCcccceEEcCCCCC--CCCCCCeeEEEEECCCCCEE
Confidence            211111111 11 12222  4567753 211     1377888888877765443221  11112234444444444566


Q ss_pred             E
Q 010571          313 A  313 (507)
Q Consensus       313 v  313 (507)
                      +
T Consensus       372 i  372 (795)
T 4a2l_A          372 I  372 (795)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.22  E-value=0.13  Score=50.66  Aligned_cols=186  Identities=14%  Similarity=0.188  Sum_probs=98.6

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  115 (507)
                      .++.+++.|+.+     ..+.+||..++.-...-..                  ......++.+++..++.|+.+.    
T Consensus       181 ~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~~~------------------h~~~v~~l~~~~~~l~s~s~dg----  233 (435)
T 1p22_A          181 YDERVIITGSSD-----STVRVWDVNTGEMLNTLIH------------------HCEAVLHLRFNNGMMVTCSKDR----  233 (435)
T ss_dssp             CCSSEEEEEETT-----SCEEEEESSSCCEEEEECC------------------CCSCEEEEECCTTEEEEEETTS----
T ss_pred             ECCCEEEEEcCC-----CeEEEEECCCCcEEEEEcC------------------CCCcEEEEEEcCCEEEEeeCCC----
Confidence            366677777743     4588999988764322111                  1122333344555666766432    


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                        .+.+||..+..-.....  ..........++.+++..++.|+.+      ..+.+||+.+.+-...-. +    ....
T Consensus       234 --~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~-~----~~~~  298 (435)
T 1p22_A          234 --SIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRTLN-G----HKRG  298 (435)
T ss_dssp             --CEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTTCCEEEEEE-C----CSSC
T ss_pred             --cEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEEEc-C----CCCc
Confidence              38888887764321110  0111112222333455566666543      358999998876443321 1    1112


Q ss_pred             ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  275 (507)
                      ..++...++ +++.|+.+     +.+.+||+.++.-...-     ......-.++.+++..++.|+.++     .+.+||
T Consensus       299 v~~~~~~~~-~l~~g~~d-----g~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~l~sg~~dg-----~i~vwd  362 (435)
T 1p22_A          299 IACLQYRDR-LVVSGSSD-----NTIRLWDIECGACLRVL-----EGHEELVRCIRFDNKRIVSGAYDG-----KIKVWD  362 (435)
T ss_dssp             EEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEE-----CCCSSCEEEEECCSSEEEEEETTS-----CEEEEE
T ss_pred             EEEEEeCCC-EEEEEeCC-----CeEEEEECCCCCEEEEE-----eCCcCcEEEEEecCCEEEEEeCCC-----cEEEEE
Confidence            233344455 66677654     46899999876543311     111122234445778888887554     377888


Q ss_pred             cCcC
Q 010571          276 MTKL  279 (507)
Q Consensus       276 ~~~~  279 (507)
                      +.+.
T Consensus       363 ~~~~  366 (435)
T 1p22_A          363 LVAA  366 (435)
T ss_dssp             HHHH
T ss_pred             CCCC
Confidence            7544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=97.21  E-value=0.13  Score=47.28  Aligned_cols=255  Identities=9%  Similarity=-0.028  Sum_probs=129.1

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .++.||+. ..+..+....   ....-++++.. ++.+|+....     ...+++||+. +....+....          
T Consensus        37 ~v~~~d~~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~~~~----------   96 (299)
T 2z2n_A           37 MISCINLD-GKITEYPLPT---PDAKVMCLTISSDGEVWFTENA-----ANKIGRITKK-GIIKEYTLPN----------   96 (299)
T ss_dssp             EEEEECTT-CCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSS----------
T ss_pred             cEEEEcCC-CCeEEecCCc---ccCceeeEEECCCCCEEEeCCC-----CCeEEEECCC-CcEEEEeCCC----------
Confidence            46778887 7777665211   11222334332 5677776432     2358889886 5554443210          


Q ss_pred             CccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCc
Q 010571           83 GLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGE  160 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~  160 (507)
                            ....-++++.. ++.||+....      ...+.+||+ ++.........   ....-..++.. ++.+|+....
T Consensus        97 ------~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           97 ------PDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             ------TTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEETT
T ss_pred             ------cCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeCC
Confidence                  01122333333 5788886532      235889998 77666553211   11111223322 4577775421


Q ss_pred             CCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCC
Q 010571          161 DRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  240 (507)
Q Consensus       161 ~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  240 (507)
                            .+.+++||+ +++.........   ...-.+++...++.+|+....     .+.+.+||+ ++.+.....    
T Consensus       161 ------~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~----  220 (299)
T 2z2n_A          161 ------NNAIGRITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKI----  220 (299)
T ss_dssp             ------TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC----
T ss_pred             ------CCEEEEEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEEC----
Confidence                  346999999 777776532111   111223444445668776532     256899999 777665422    


Q ss_pred             CCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccC
Q 010571          241 VTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN  318 (507)
Q Consensus       241 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~  318 (507)
                      +........+.+  ++.+|+....     .+.+.+||+ +.....+.....       ......+.+ .++.|++...  
T Consensus       221 ~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~-------~~~~~~i~~-~~g~l~v~~~--  284 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPIQIK-------SAEPHGICF-DGETIWFAME--  284 (299)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEEECSSS-------SCCEEEEEE-CSSCEEEEET--
T ss_pred             CCCCCCceeEEECCCCCEEEeccC-----CceEEEECC-CCceEEEeCCCC-------CCccceEEe-cCCCEEEEec--
Confidence            111122233333  4577776421     235889998 445444422110       112223333 4446776543  


Q ss_pred             CCcCCeEEEEECCCC
Q 010571          319 GKYNNEVFVMRLKPR  333 (507)
Q Consensus       319 ~~~~~~v~~~~~~~~  333 (507)
                         .+.+++|++.+.
T Consensus       285 ---~~~l~~~~~~~~  296 (299)
T 2z2n_A          285 ---CDKIGKLTLIKD  296 (299)
T ss_dssp             ---TTEEEEEEEC--
T ss_pred             ---CCcEEEEEcCcc
Confidence               256888887654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.21  E-value=0.13  Score=47.87  Aligned_cols=230  Identities=12%  Similarity=0.108  Sum_probs=114.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|..++.....-..                  .......+.+  ++.+++.|+.+    
T Consensus        34 ~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~l~s~~~d----   86 (312)
T 4ery_A           34 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISG------------------HKLGISDVAWSSDSNLLVSASDD----   86 (312)
T ss_dssp             TSSEEEEEETT-----SCEEEEETTTCCEEEEECC------------------CSSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEeeCC-----CeEEEEeCCCcccchhhcc------------------CCCceEEEEEcCCCCEEEEECCC----
Confidence            45566666633     3578889888776443221                  1112222333  56677777643    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                        ..+.+||..++.-...-.     .......++.+  ++.+++.|+.+      ..+.+||+.+.+-...-.  .  ..
T Consensus        87 --~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~--~--~~  149 (312)
T 4ery_A           87 --KTLKIWDVSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKTLP--A--HS  149 (312)
T ss_dssp             --SEEEEEETTTCCEEEEEE-----CCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEEEC--C--CS
T ss_pred             --CEEEEEECCCCcEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEEec--C--CC
Confidence              358899988876433221     01111122223  34566667654      358999998776443321  1  01


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcce
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQE  270 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d  270 (507)
                      ..-.++....++.+++.|+.+     ..+.+||+.+..........    .......+.+  ++..++.|+.++     .
T Consensus       150 ~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~-----~  215 (312)
T 4ery_A          150 DPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLIDD----DNPPVSFVKFSPNGKYILAATLDN-----T  215 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECCS----SCCCEEEEEECTTSSEEEEEETTT-----E
T ss_pred             CcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeeEEecc----CCCceEEEEECCCCCEEEEEcCCC-----e
Confidence            111223333455577777764     45889999877644321101    1111122333  456667766433     5


Q ss_pred             EEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          271 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       271 ~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      +.+||+.+..-...  +..... .  ...........+..+++.|+.+    ..+.++|+...
T Consensus       216 i~iwd~~~~~~~~~--~~~~~~-~--~~~~~~~~~~~~~~~l~sg~~d----g~i~vwd~~~~  269 (312)
T 4ery_A          216 LKLWDYSKGKCLKT--YTGHKN-E--KYCIFANFSVTGGKWIVSGSED----NLVYIWNLQTK  269 (312)
T ss_dssp             EEEEETTTTEEEEE--ECSSCC-S--SSCCCEEEECSSSCEEEECCTT----SCEEEEETTTC
T ss_pred             EEEEECCCCcEEEE--EEecCC-c--eEEEEEEEEeCCCcEEEEECCC----CEEEEEECCCc
Confidence            78899887653321  111110 0  1111111222233466667754    45778887554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.14  E-value=0.13  Score=50.75  Aligned_cols=224  Identities=14%  Similarity=0.157  Sum_probs=118.0

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  115 (507)
                      .++..++.|+.+     ..+.+||..++.-...-..                  ......++..++.+++.|+.+.    
T Consensus       141 ~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~------------------h~~~v~~l~~~~~~l~sg~~dg----  193 (435)
T 1p22_A          141 YDDQKIVSGLRD-----NTIKIWDKNTLECKRILTG------------------HTGSVLCLQYDERVIITGSSDS----  193 (435)
T ss_dssp             CCSSEEEEEESS-----SCEEEEESSSCCEEEEECC------------------CSSCEEEEECCSSEEEEEETTS----
T ss_pred             ECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEcC------------------CCCcEEEEEECCCEEEEEcCCC----
Confidence            366677777743     4688999987764332211                  1122334444777888877542    


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                        .+.+||..++......     ........++.+.+..++.|+.+      ..+.+||+.+..-.....  ........
T Consensus       194 --~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~--~~~~~~~~  258 (435)
T 1p22_A          194 --TVRVWDVNTGEMLNTL-----IHHCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRR--VLVGHRAA  258 (435)
T ss_dssp             --CEEEEESSSCCEEEEE-----CCCCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEE--EECCCSSC
T ss_pred             --eEEEEECCCCcEEEEE-----cCCCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeee--EecCCCCc
Confidence              3889999888654332     11112223334455566667653      358889987654321110  00111112


Q ss_pred             ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEE
Q 010571          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d  275 (507)
                      ..++...++ .++.|+.+     ..+.+||+.+..-...-     ........++.+++.+++.|+.++     .+.+||
T Consensus       259 v~~~~~~~~-~l~s~~~d-----g~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~g~~dg-----~i~iwd  322 (435)
T 1p22_A          259 VNVVDFDDK-YIVSASGD-----RTIKVWNTSTCEFVRTL-----NGHKRGIACLQYRDRLVVSGSSDN-----TIRLWD  322 (435)
T ss_dssp             EEEEEEETT-EEEEEETT-----SEEEEEETTTCCEEEEE-----ECCSSCEEEEEEETTEEEEEETTS-----CEEEEE
T ss_pred             EEEEEeCCC-EEEEEeCC-----CeEEEEECCcCcEEEEE-----cCCCCcEEEEEeCCCEEEEEeCCC-----eEEEEE
Confidence            233344455 55666654     46889998877543321     111122234445677777877543     478899


Q ss_pred             cCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          276 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       276 ~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                      +.+..-..  .+...      ......+.+++  ..++.|+.+    ..+.++|+.
T Consensus       323 ~~~~~~~~--~~~~h------~~~v~~~~~~~--~~l~sg~~d----g~i~vwd~~  364 (435)
T 1p22_A          323 IECGACLR--VLEGH------EELVRCIRFDN--KRIVSGAYD----GKIKVWDLV  364 (435)
T ss_dssp             TTTCCEEE--EECCC------SSCEEEEECCS--SEEEEEETT----SCEEEEEHH
T ss_pred             CCCCCEEE--EEeCC------cCcEEEEEecC--CEEEEEeCC----CcEEEEECC
Confidence            88764322  22111      11222333333  456667754    457777763

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=97.14  E-value=0.023  Score=56.11  Aligned_cols=228  Identities=10%  Similarity=-0.030  Sum_probs=118.6

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ..|.+|+....-..+....     ..-.+.+.. ++..+++++..++  ...++++|+.++....+....          
T Consensus       160 ~i~i~d~~g~~~~~l~~~~-----~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~~----------  222 (415)
T 2hqs_A          160 ELRVSDYDGYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVASFP----------  222 (415)
T ss_dssp             EEEEEETTSCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEECCS----------
T ss_pred             eEEEEcCCCCCCEEEeCCC-----CcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeecCC----------
Confidence            4567777655444443211     111122222 4455555554322  257999999998776544221          


Q ss_pred             CccCCCCCccceeeEEE--CC-EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEE
Q 010571           83 GLLEVLPPMSDHCMVKW--GT-KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~  157 (507)
                             .  ....+.+  ++ .|++.+....    ...++++|+.++....+.   ..+   .......+  +++.+++
T Consensus       223 -------~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~---~~~---~~~~~~~~spdg~~l~~  283 (415)
T 2hqs_A          223 -------R--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVT---DGR---SNNTEPTWFPDSQNLAF  283 (415)
T ss_dssp             -------S--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECC---CCS---SCEEEEEECTTSSEEEE
T ss_pred             -------C--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCc---CCC---CcccceEECCCCCEEEE
Confidence                   1  1222333  44 4555544322    346999999998876554   111   11222233  4444444


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeec
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK  237 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~  237 (507)
                      ++....   ...++.+|+.+..-..+...     ......++...++..+++++....  ...++++|+.++....+.. 
T Consensus       284 ~s~~~g---~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~-  352 (415)
T 2hqs_A          284 TSDQAG---RPQVYKVNINGGAPQRITWE-----GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSS-  352 (415)
T ss_dssp             EECTTS---SCEEEEEETTSSCCEECCCS-----SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCC-
T ss_pred             EECCCC---CcEEEEEECCCCCEEEEecC-----CCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecC-
Confidence            432211   34699999988775544311     112223333345545555554321  3579999999988866532 


Q ss_pred             CCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          238 GDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                       .   .  ....+.+  +++.+++++....  ...++++|+.......++.
T Consensus       353 -~---~--~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          353 -T---F--LDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             -S---S--SCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECCC
T ss_pred             -C---C--CcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEeeC
Confidence             1   1  1122333  5666777664322  3478999988777666644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.12  E-value=0.087  Score=50.07  Aligned_cols=235  Identities=13%  Similarity=0.078  Sum_probs=109.6

Q ss_pred             ceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEee
Q 010571           54 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME  133 (507)
Q Consensus        54 ~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~  133 (507)
                      .++.+|..++.+..+......               ..-...+..-+++||+.+...    ....+++||+.++.++.+.
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~---------------~~p~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~   79 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAAT---------------QNPTYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLN   79 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC---------------SCCCCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeecc---------------CCcceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEee
Confidence            377788888888775543210               111112222367777765421    1346999999888877665


Q ss_pred             cCCCCCCCcccceEEEE-CC-EEEEEcCcCCCCCccCcEEEEEcC-CCcEEEee---cCCCCCCCCC----CceEEEEcC
Q 010571          134 TSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVE---VTQTPPAPRY----DHSAALHAN  203 (507)
Q Consensus       134 ~~g~~p~~r~~~~~~~~-~~-~l~~~GG~~~~~~~~~~~~~~d~~-t~~W~~~~---~~g~~p~~r~----~~~~~~~~~  203 (507)
                      ..  ......-..++.- ++ .||+.+..      .+.+.+|++. ++....+.   ..+..|.+|.    .+.++...+
T Consensus        80 ~~--~~~~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd  151 (347)
T 3hfq_A           80 TV--VAPGTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD  151 (347)
T ss_dssp             EE--EEESCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred             ee--ecCCCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC
Confidence            21  0011111122222 33 56665432      2358888874 33443332   2222222221    223444456


Q ss_pred             cEEEEEeCCCCCcCCCcEEEEECC-CCcEEeeeecCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCcceEEEEEcC--
Q 010571          204 RYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITI--DEN-WYIVGGGDNNNGCQETIVLNMT--  277 (507)
Q Consensus       204 ~~l~i~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~d~~~~d~~--  277 (507)
                      +.+|+.+...     +.+++|++. ++....+... ..+.. .....+.+  +++ +|+.+...     +.+.+|+..  
T Consensus       152 g~l~v~~~~~-----~~v~~~~~~~~g~~~~~~~~-~~~~g-~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~  219 (347)
T 3hfq_A          152 NRLAVIDLGS-----DKVYVYNVSDAGQLSEQSVL-TMEAG-FGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQ  219 (347)
T ss_dssp             SCEEEEETTT-----TEEEEEEECTTSCEEEEEEE-ECCTT-CCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETT
T ss_pred             CcEEEEeCCC-----CEEEEEEECCCCcEEEeeeE-EcCCC-CCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCC
Confidence            6666654332     468899987 5555543211 11111 11122333  444 66654322     234555544  


Q ss_pred             cCeeEEeccCCCCCCCCCCCCceE-EEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          278 KLAWSILTSVKGRNPLASEGLSVC-SAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       278 ~~~W~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                      +..+..+................. ....+++.+||+.+..    .+.+.+|++.
T Consensus       220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~----~~~v~v~~~~  270 (347)
T 3hfq_A          220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG----YNTLAVFAVT  270 (347)
T ss_dssp             TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET----TTEEEEEEEC
T ss_pred             CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC----CCEEEEEEEC
Confidence            566654433221110000111222 3334445567776543    2457777764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.09  E-value=0.087  Score=50.27  Aligned_cols=150  Identities=11%  Similarity=0.101  Sum_probs=78.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~  115 (507)
                      ++.+++.|+.+     ..+.+||+.++.+..+.....-               ...-.+++.. ++.+++.|+.+     
T Consensus        19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~l~~~~~d-----   73 (372)
T 1k8k_C           19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEH---------------NGQVTGVDWAPDSNRIVTCGTD-----   73 (372)
T ss_dssp             TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECC---------------SSCEEEEEEETTTTEEEEEETT-----
T ss_pred             CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCC---------------CCcccEEEEeCCCCEEEEEcCC-----
Confidence            45666777632     4689999999877665544310               1111122222 56666676643     


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCc-EEEeecCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~  192 (507)
                       ..+.+||..++.+.....   .........++.+  ++..++.|+.+      ..+.+||+.+.. |...... ..+..
T Consensus        74 -g~i~vwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~-~~~~~  142 (372)
T 1k8k_C           74 -RNAYVWTLKGRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHI-KKPIR  142 (372)
T ss_dssp             -SCEEEEEEETTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEE-CTTCC
T ss_pred             -CeEEEEECCCCeeeeeEE---eecCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeee-ecccC
Confidence             238888988888765542   1111122223333  45566666643      347777776544 3333211 11112


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECC
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~  227 (507)
                      ..-.+++...++.+++.|+.+     ..+.+||+.
T Consensus       143 ~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~  172 (372)
T 1k8k_C          143 STVLSLDWHPNSVLLAAGSCD-----FKCRIFSAY  172 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEECC
T ss_pred             CCeeEEEEcCCCCEEEEEcCC-----CCEEEEEcc
Confidence            222233444455577777754     457888854

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=97.06  E-value=0.055  Score=51.45  Aligned_cols=278  Identities=13%  Similarity=0.106  Sum_probs=128.7

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCC
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      +|.+|+.+..+..+.......   .-..++.. ++.||+.+...   ....+++||+.++.+..+......         
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~---~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~---------   84 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQ---NPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAP---------   84 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECS---CCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEEE---------
T ss_pred             EEEEcCCCCeEEEeeeeeccC---CcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeecC---------
Confidence            678888888887754211111   11223333 56677765421   124689999988887766542210         


Q ss_pred             ccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECC-CCcEEEee---cCCCCCCCcc---cceEEEE--CCE
Q 010571           84 LLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLE-TNLCGVME---TSGKVPVARG---GHSVTLV--GSR  153 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~-t~~W~~~~---~~g~~p~~r~---~~~~~~~--~~~  153 (507)
                           .....+.+..-+ ..||+.+..      ...+.+|++. ++....+.   ..+..|.+|.   ....+.+  +++
T Consensus        85 -----~~~p~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~  153 (347)
T 3hfq_A           85 -----GTPPAYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR  153 (347)
T ss_dssp             -----SCCCSEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC
T ss_pred             -----CCCCEEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc
Confidence                 011122222334 456665421      2347777764 44444332   1222222221   1122333  456


Q ss_pred             EEEEcCcCCCCCccCcEEEEEcC-CCcEEEeecCCCCCCCCCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECC--CC
Q 010571          154 LIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQ--TN  229 (507)
Q Consensus       154 l~~~GG~~~~~~~~~~~~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~--~~  229 (507)
                      +|+.+..      .+.+.+||+. +++...+... ..+....-..++...++ .+|+.+..+     +.+.+|++.  ++
T Consensus       154 l~v~~~~------~~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g  221 (347)
T 3hfq_A          154 LAVIDLG------SDKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTG  221 (347)
T ss_dssp             EEEEETT------TTEEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTT
T ss_pred             EEEEeCC------CCEEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCC
Confidence            6665432      2468899987 5665544311 11111111223444454 467655432     345555544  56


Q ss_pred             cEEeeeecCCCCCC---CcceEEEEE--CC-EEEEEeccCCCCCcceEEEEEcC-cCeeEEeccCCCCCCCCCCCCceEE
Q 010571          230 EWSQPEIKGDLVTG---RAGHAGITI--DE-NWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCS  302 (507)
Q Consensus       230 ~W~~~~~~~~~p~~---r~~~~~~~~--~~-~l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~~~~~p~~~~~~~~~~  302 (507)
                      .+..+......|..   ......+.+  ++ .||+.+..+     +.+.+|++. +..+..+..++...     ......
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~-----~~~~~~  291 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY-----NTLAVFAVTADGHLTLIQQISTEG-----DFPRDF  291 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT-----TEEEEEEECGGGCEEEEEEEECSS-----SCCCEE
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC-----CEEEEEEECCCCcEEEeEEEecCC-----CCcCeE
Confidence            66554322222221   122233444  34 466654322     357788875 33455544332210     011123


Q ss_pred             EEEcCceEEEEEcccCCCcCCeEEEE--ECCCCC
Q 010571          303 AIIEGEHHLVAFGGYNGKYNNEVFVM--RLKPRD  334 (507)
Q Consensus       303 ~~~~~~~~l~v~GG~~~~~~~~v~~~--~~~~~~  334 (507)
                      ...+++.+|++.+..+    +.+.+|  |..+..
T Consensus       292 ~~spdg~~l~v~~~~~----~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          292 DLDPTEAFVVVVNQNT----DNATLYARDLTSGK  321 (347)
T ss_dssp             EECTTSSEEEEEETTT----TEEEEEEECTTTCC
T ss_pred             EECCCCCEEEEEEcCC----CcEEEEEEeCCCCe
Confidence            3344455677655432    345555  554443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.11  Score=49.67  Aligned_cols=191  Identities=12%  Similarity=0.096  Sum_probs=98.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--C--CEEEEEcccCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~  112 (507)
                      ++.+++.|+.+     ..+.+||.....+..+.....                ......++.+  +  +.+++.|+.+. 
T Consensus        22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~~~l~s~~~dg-   79 (379)
T 3jrp_A           22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTG----------------HEGPVWRVDWAHPKFGTILASCSYDG-   79 (379)
T ss_dssp             SSSEEEEEETT-----SCEEEEEEETTEEEEEEEECC----------------CSSCEEEEEECCGGGCSEEEEEETTS-
T ss_pred             CCCEEEEEECC-----CcEEEEecCCCcceeeeEecC----------------CCCcEEEEEeCCCCCCCEEEEeccCC-
Confidence            45566666633     458888888777666554321                1122233333  2  56677776532 


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--C--CEEEEEcCcCCCCCccCcEEEEEcCCCcE-EEeecCC
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEVTQ  187 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~l~~~GG~~~~~~~~~~~~~~d~~t~~W-~~~~~~g  187 (507)
                           .+.+||+.++.|..+..   .........++.+  +  +.+++.|+.+      ..+.+||+.+..- ......+
T Consensus        80 -----~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~  145 (379)
T 3jrp_A           80 -----KVLIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA  145 (379)
T ss_dssp             -----CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEEC
T ss_pred             -----EEEEEEcCCCceeEeee---ecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecC
Confidence                 38889999998877653   2222222233333  2  4566777653      3588888876532 1111111


Q ss_pred             CCCCCCCCceEEEEc-------------CcEEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecCCCCCCCcceEEEEE
Q 010571          188 TPPAPRYDHSAALHA-------------NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       188 ~~p~~r~~~~~~~~~-------------~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                      .   ...-.+++...             ++.+++.|+.+     ..+.+||+.+..  +..+..   .........++.+
T Consensus       146 ~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~h~~~v~~~~~  214 (379)
T 3jrp_A          146 H---AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAW  214 (379)
T ss_dssp             C---TTCEEEEEECCCC----------CTTCEEEEEETT-----SCEEEEEEETTTTEEEEEEE---ECCCSSCEEEEEE
T ss_pred             C---CCceEEEEEcCccccccccccCCCCCCEEEEEeCC-----CeEEEEEecCCCcceeeEEE---EecccCcEeEEEE
Confidence            1   11112222222             35577777765     357788875543  444321   1111122223333


Q ss_pred             --C---CEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          253 --D---ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       253 --~---~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                        +   +.+++.|+.++     .+.+||+.+.
T Consensus       215 sp~~~~~~~l~s~~~dg-----~i~iwd~~~~  241 (379)
T 3jrp_A          215 SPTVLLRSYLASVSQDR-----TCIIWTQDNE  241 (379)
T ss_dssp             CCCCSSSEEEEEEETTS-----CEEEEEESST
T ss_pred             CCCCCCCCeEEEEeCCC-----EEEEEeCCCC
Confidence              3   57777777554     3677887665

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=97.03  E-value=0.17  Score=49.34  Aligned_cols=218  Identities=16%  Similarity=0.161  Sum_probs=112.1

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  130 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~  130 (507)
                      ..+.+||..++.........                 ......++.+  ++.+++.|+.+.      .+.+||+.++...
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~-----------------~~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~  169 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETD-----------------ESTYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKL  169 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECC-----------------TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEE
T ss_pred             CeEEEeeCCCCcEeEeeecC-----------------CCCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEE
Confidence            46999999998876554432                 1112223333  566666766432      4889999887644


Q ss_pred             EeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          131 VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       131 ~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      ...   .  .......++..++.+++.|+.+      ..+..+|+.+..-......+   ....-.++....++.+++.|
T Consensus       170 ~~~---~--~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~  235 (401)
T 4aez_A          170 RTM---A--GHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG---HSSEVCGLAWRSDGLQLASG  235 (401)
T ss_dssp             EEE---C--CCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC---CSSCEEEEEECTTSSEEEEE
T ss_pred             EEe---c--CCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC---CCCCeeEEEEcCCCCEEEEE
Confidence            332   1  1112223334466677777653      36889998743322221111   11112233344455577777


Q ss_pred             CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE---CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccC
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~  287 (507)
                      +.+     ..+.+||+.+..-...-  .   .......++.+   +..+++.||...+   ..+.+||+.+..-...-..
T Consensus       236 ~~d-----~~v~iwd~~~~~~~~~~--~---~~~~~v~~~~~~p~~~~ll~~~~gs~d---~~i~i~d~~~~~~~~~~~~  302 (401)
T 4aez_A          236 GND-----NVVQIWDARSSIPKFTK--T---NHNAAVKAVAWCPWQSNLLATGGGTMD---KQIHFWNAATGARVNTVDA  302 (401)
T ss_dssp             ETT-----SCEEEEETTCSSEEEEE--C---CCSSCCCEEEECTTSTTEEEEECCTTT---CEEEEEETTTCCEEEEEEC
T ss_pred             eCC-----CeEEEccCCCCCccEEe--c---CCcceEEEEEECCCCCCEEEEecCCCC---CEEEEEECCCCCEEEEEeC
Confidence            764     46889999876543311  1   11111122333   3467777753222   2588899877654332111


Q ss_pred             CCCCCCCCCCCceEEEE-EcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          288 KGRNPLASEGLSVCSAI-IEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       288 ~~~~p~~~~~~~~~~~~-~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                               +.....+. .+++..|++.+|..   ...+.+|++..
T Consensus       303 ---------~~~v~~~~~s~~~~~l~~~~g~~---dg~i~v~~~~~  336 (401)
T 4aez_A          303 ---------GSQVTSLIWSPHSKEIMSTHGFP---DNNLSIWSYSS  336 (401)
T ss_dssp             ---------SSCEEEEEECSSSSEEEEEECTT---TCEEEEEEEET
T ss_pred             ---------CCcEEEEEECCCCCeEEEEeecC---CCcEEEEecCC
Confidence                     11222333 34445666655533   24567777644

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.02  E-value=0.25  Score=47.03  Aligned_cols=229  Identities=12%  Similarity=0.081  Sum_probs=108.1

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCC-CccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARP-SPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~   80 (507)
                      ..+.+||+....|..+..   +. ....-.+++.. ++.+++.|+.+     ..+.+||+.++.+........       
T Consensus        30 ~~v~i~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~-------   94 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHE---LKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILR-------   94 (372)
T ss_dssp             SEEEEEEEETTEEEEEEE---EECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECCC-------
T ss_pred             CEEEEEeCCCCcEEeeee---ecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCCCeeeeeEEeec-------
Confidence            345677887776654442   11 11111223333 45566666633     458899998888765543221       


Q ss_pred             cCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCCcccceEEEE--CCEEE
Q 010571           81 DSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLV--GSRLI  155 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~l~  155 (507)
                               .......+.+  ++.+++.|+.+.      .+.+||..+.. |...... ..+.. ....++.+  ++..+
T Consensus        95 ---------~~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~-~~~~~-~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           95 ---------INRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHI-KKPIR-STVLSLDWHPNSVLL  157 (372)
T ss_dssp             ---------CSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEE-CTTCC-SCEEEEEECTTSSEE
T ss_pred             ---------CCCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeee-ecccC-CCeeEEEEcCCCCEE
Confidence                     1112222333  456666666432      25566655543 3322210 11111 11222233  45667


Q ss_pred             EEcCcCCCCCccCcEEEEEcC------------------CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcC
Q 010571          156 IFGGEDRSRKLLNDVHFLDLE------------------TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIF  217 (507)
Q Consensus       156 ~~GG~~~~~~~~~~~~~~d~~------------------t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~  217 (507)
                      +.|+.+      ..+..||+.                  +..-...-   . .....-.+++...++.+++.|+.+    
T Consensus       158 ~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~~d----  223 (372)
T 1k8k_C          158 AAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---S-SSCGWVHGVCFSANGSRVAWVSHD----  223 (372)
T ss_dssp             EEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---C-CCSSCEEEEEECSSSSEEEEEETT----
T ss_pred             EEEcCC------CCEEEEEcccccccccccccccccccchhhheEec---C-CCCCeEEEEEECCCCCEEEEEeCC----
Confidence            777653      358888854                  22211111   0 111111223333455466666654    


Q ss_pred             CCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCc--CeeEEeccC
Q 010571          218 FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK--LAWSILTSV  287 (507)
Q Consensus       218 ~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~~~  287 (507)
                       ..+.+||+.+..-...-. +  ...........-++.+++.| .++     .+.+|++.+  ..|..+..+
T Consensus       224 -~~i~i~d~~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l~~~-~d~-----~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          224 -STVCLADADKKMAVATLA-S--ETLPLLAVTFITESSLVAAG-HDC-----FPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             -TEEEEEEGGGTTEEEEEE-C--SSCCEEEEEEEETTEEEEEE-TTS-----SCEEEEEETTTTEEEECCCC
T ss_pred             -CEEEEEECCCCceeEEEc-c--CCCCeEEEEEecCCCEEEEE-eCC-----eEEEEEccCcCceEEEeecc
Confidence             458899987765433211 1  11111111222356666555 332     356777777  888776444

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.01  E-value=0.2  Score=46.78  Aligned_cols=186  Identities=16%  Similarity=0.085  Sum_probs=96.2

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++++++.|+.+      ..+.+||+.+........   .........++.+  ++..++.|+.+      ..+..||+.+
T Consensus       108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAE---LTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEE---EECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCCcceeee---cccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCC
Confidence            45666666542      358899998887544331   1111111222223  44566666643      3599999988


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCE
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN  255 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~  255 (507)
                      .+....-.   . ....-.+++...++..++.|+.+     ..+.+||+.+..-.....   .  +... ..+.+  ++.
T Consensus       173 ~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~---~--~~~v-~~~~~s~~~~  237 (337)
T 1gxr_A          173 QTLVRQFQ---G-HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHD---F--TSQI-FSLGYCPTGE  237 (337)
T ss_dssp             TEEEEEEC---C-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEE---C--SSCE-EEEEECTTSS
T ss_pred             Cceeeeee---c-ccCceEEEEECCCCCEEEEEecC-----CcEEEEECCCCceEeeec---C--CCce-EEEEECCCCC
Confidence            76544321   1 11112233344455566677654     468999998775443211   1  1111 22233  456


Q ss_pred             EEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          256 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       256 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      .+++|+.++     .+.+||+.+..-..+...         ......+.+..+..+++.|+.+    ..+..+++...
T Consensus       238 ~l~~~~~~~-----~i~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d----g~i~~~~~~~~  297 (337)
T 1gxr_A          238 WLAVGMESS-----NVEVLHVNKPDKYQLHLH---------ESCVLSLKFAYCGKWFVSTGKD----NLLNAWRTPYG  297 (337)
T ss_dssp             EEEEEETTS-----CEEEEETTSSCEEEECCC---------SSCEEEEEECTTSSEEEEEETT----SEEEEEETTTC
T ss_pred             EEEEEcCCC-----cEEEEECCCCCeEEEcCC---------ccceeEEEECCCCCEEEEecCC----CcEEEEECCCC
Confidence            777776433     478899887653333211         1123333444333456666654    46788887654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.99  E-value=0.26  Score=46.95  Aligned_cols=279  Identities=9%  Similarity=0.034  Sum_probs=123.9

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCce--EEEECCCCceeEeeeccccccCccc
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDV--QVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~--~~~d~~t~~W~~~~~~~~~~~~~~~   80 (507)
                      +|.+|+.+..++.+...    ....-+.++..  +..||+.+.....  ...+  |.++..++....+......      
T Consensus        31 ~~~~d~~~g~~~~~~~~----~~~~p~~l~~spdg~~l~~~~~~~~~--~~~v~~~~~~~~~g~~~~~~~~~~~------   98 (361)
T 3scy_A           31 TFRFNEETGESLPLSDA----EVANPSYLIPSADGKFVYSVNEFSKD--QAAVSAFAFDKEKGTLHLLNTQKTM------   98 (361)
T ss_dssp             EEEEETTTCCEEEEEEE----ECSCCCSEEECTTSSEEEEEECCSST--TCEEEEEEEETTTTEEEEEEEEECS------
T ss_pred             EEEEeCCCCCEEEeecc----cCCCCceEEECCCCCEEEEEEccCCC--CCcEEEEEEeCCCCcEEEeeEeccC------
Confidence            45677788888877642    11111223333  4457766553211  2334  5556666777666543210      


Q ss_pred             cCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc-EE----EeecCCCCCCC----ccc-ceEEEE
Q 010571           81 DSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-CG----VMETSGKVPVA----RGG-HSVTLV  150 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~-W~----~~~~~g~~p~~----r~~-~~~~~~  150 (507)
                               ...-+.++.-++.||+.+..      ...+.+|++.+.. ..    .....+..|.+    ... ++++.-
T Consensus        99 ---------~~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A           99 ---------GADPCYLTTNGKNIVTANYS------GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT  163 (361)
T ss_dssp             ---------SSCEEEEEECSSEEEEEETT------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred             ---------CCCcEEEEECCCEEEEEECC------CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence                     11112223334456655421      2347788875432 11    11111222211    111 223322


Q ss_pred             -CC-EEEEEcCcCCCCCccCcEEEEEcCCCc-------EEEe---ecCCCCCCCCCCceEEEEcCc-EEEEEeCCCCCcC
Q 010571          151 -GS-RLIIFGGEDRSRKLLNDVHFLDLETMT-------WDAV---EVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIF  217 (507)
Q Consensus       151 -~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~-------W~~~---~~~g~~p~~r~~~~~~~~~~~-~l~i~GG~~~~~~  217 (507)
                       ++ .+|+.+..      .+.+.+|++....       ....   ... ..+....-..++...++ .+|+.+..+    
T Consensus       164 pdg~~l~~~~~~------~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~----  232 (361)
T 3scy_A          164 PDGKYLLADDLG------TDQIHKFNINPNANADNKEKFLTKGTPEAF-KVAPGSGPRHLIFNSDGKFAYLINEIG----  232 (361)
T ss_dssp             TTSSEEEEEETT------TTEEEEEEECTTCCTTTCCCCEEEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTT----
T ss_pred             CCCCEEEEEeCC------CCEEEEEEEcCCCCcccccceeecccccce-ecCCCCCCeEEEEcCCCCEEEEEcCCC----
Confidence             34 57765432      3357778766443       2111   000 11111111234444454 566655322    


Q ss_pred             CCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCcceEEEEEc--CcCeeEEeccCCCCCC
Q 010571          218 FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN-WYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVKGRNP  292 (507)
Q Consensus       218 ~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~d~~~~d~--~~~~W~~~~~~~~~~p  292 (507)
                       +.+.+|++.++.+..+......+........+.+  +++ ||+.+...    .+.+.+|++  .+..+..+...+..  
T Consensus       233 -~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~----~~~i~v~~~~~~~g~~~~~~~~~~g--  305 (361)
T 3scy_A          233 -GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK----ADGVAIFKVDETNGTLTKVGYQLTG--  305 (361)
T ss_dssp             -CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS----SCEEEEEEECTTTCCEEEEEEEECS--
T ss_pred             -CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC----CCEEEEEEEcCCCCcEEEeeEecCC--
Confidence             5688999888777654432233332223334444  444 55543220    124556655  46677665544321  


Q ss_pred             CCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571          293 LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                          .........+++.+|++.+..++  .-.+|.+|+.+..
T Consensus       306 ----~~~~~~~~spdg~~l~~~~~~~~--~v~v~~~d~~~g~  341 (361)
T 3scy_A          306 ----IHPRNFIITPNGKYLLVACRDTN--VIQIFERDQATGL  341 (361)
T ss_dssp             ----SCCCEEEECTTSCEEEEEETTTT--EEEEEEECTTTCC
T ss_pred             ----CCCceEEECCCCCEEEEEECCCC--CEEEEEEECCCCc
Confidence                11112333444556666553321  2234556655443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.99  E-value=0.49  Score=49.95  Aligned_cols=132  Identities=18%  Similarity=0.142  Sum_probs=74.4

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG  108 (507)
                      .+-++.++.||+.+.      ...++.+|..|++  |+.-......    ..    ..........+.++.+++||+...
T Consensus        64 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~----~~----~~~~~~~~~~~~~~~~g~v~v~~~  129 (689)
T 1yiq_A           64 ATPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRH----RA----GEACCDAVNRGVAVWKGKVYVGVL  129 (689)
T ss_dssp             CCCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGG----GG----GGCTTCSCCCCCEEETTEEEEECT
T ss_pred             ecCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCcc----cc----ccccccCCCCccEEECCEEEEEcc
Confidence            444567999999765      3469999999874  8764322110    00    000000112234567888888642


Q ss_pred             cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEee
Q 010571          109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  184 (507)
Q Consensus       109 ~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~  184 (507)
                             ...++.+|..|++  |+...............+.++.++.+|+-.+... ......++.||..|++  |+.-.
T Consensus       130 -------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~~  201 (689)
T 1yiq_A          130 -------DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFYT  201 (689)
T ss_dssp             -------TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred             -------CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEecc
Confidence                   2358999998874  8765420111111222334556888877432211 1124579999999876  87653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.93  E-value=0.13  Score=46.96  Aligned_cols=229  Identities=10%  Similarity=0.034  Sum_probs=113.6

Q ss_pred             CCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCC-CcEE
Q 010571           52 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET-NLCG  130 (507)
Q Consensus        52 ~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t-~~W~  130 (507)
                      ...++++|+.++....+....                 .........-+++.+++++       ...++++|+.+ +...
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~-----------------~~v~~~~~spdg~~l~~~~-------~~~i~~~d~~~~~~~~   76 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTP-----------------ELFEAPNWSPDGKYLLLNS-------EGLLYRLSLAGDPSPE   76 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEES-----------------SCCEEEEECTTSSEEEEEE-------TTEEEEEESSSCCSCE
T ss_pred             ceeEEEEeCCCCceeeeccCC-----------------cceEeeEECCCCCEEEEEc-------CCeEEEEeCCCCCCce
Confidence            457999999998876554322                 1111222222555555554       12599999998 7766


Q ss_pred             EeecCCCCCCCcccceEEE-ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCc-EEEE
Q 010571          131 VMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIV  208 (507)
Q Consensus       131 ~~~~~g~~p~~r~~~~~~~-~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~i  208 (507)
                      .+.   ..+....-..++. -++..+++++....  ....++.+++.+..-..+...   . .  ...+....++ .|++
T Consensus        77 ~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~---~-~--~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           77 KVD---TGFATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKN---L-P--SYWHGWSPDGKSFTY  145 (297)
T ss_dssp             ECC---CTTCCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSS---S-S--EEEEEECTTSSEEEE
T ss_pred             Eec---cccccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecC---C-C--ccceEECCCCCEEEE
Confidence            554   2221111112222 24455555553222  245799999887775554321   1 1  2223333344 3444


Q ss_pred             EeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          209 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       209 ~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      .++.++   ...+|.+++.+.....+..   .  + .....+.+  ++..+++++...  ....+|.+++.......+..
T Consensus       146 ~~~~~~---~~~l~~~~~~~~~~~~~~~---~--~-~~~~~~~~s~dg~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~  214 (297)
T 2ojh_A          146 CGIRDQ---VFDIYSMDIDSGVETRLTH---G--E-GRNDGPDYSPDGRWIYFNSSRT--GQMQIWRVRVDGSSVERITD  214 (297)
T ss_dssp             EEEETT---EEEEEEEETTTCCEEECCC---S--S-SCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCEEECCC
T ss_pred             EECCCC---ceEEEEEECCCCcceEccc---C--C-CccccceECCCCCEEEEEecCC--CCccEEEECCCCCCcEEEec
Confidence            444332   1367888887777665421   1  1 11122333  455444443211  23468888877766655432


Q ss_pred             CCCCCCCCCCCCceEEEEE-cCceEEEEEcccCCC------cCCeEEEEECCCCCC
Q 010571          287 VKGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGK------YNNEVFVMRLKPRDI  335 (507)
Q Consensus       287 ~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~~~~------~~~~v~~~~~~~~~w  335 (507)
                      .         ......+.. +++..|++.+...+.      ....++.+|+.....
T Consensus       215 ~---------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          215 S---------AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             C---------SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred             C---------CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence            2         112222333 344444444332211      235689999876543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.12  Score=50.21  Aligned_cols=144  Identities=11%  Similarity=0.018  Sum_probs=73.6

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~  179 (507)
                      +..++.|+..      ..+.+||+.+..-....   .... ..-.+++.. ++.+++.|+.+      ..+.+||+.+.+
T Consensus       217 ~~~~~~~~~~------g~i~~~d~~~~~~~~~~---~~~~-~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~  280 (425)
T 1r5m_A          217 DDKFVIPGPK------GAIFVYQITEKTPTGKL---IGHH-GPISVLEFNDTNKLLLSASDD------GTLRIWHGGNGN  280 (425)
T ss_dssp             TTEEEEECGG------GCEEEEETTCSSCSEEE---CCCS-SCEEEEEEETTTTEEEEEETT------SCEEEECSSSBS
T ss_pred             CCEEEEEcCC------CeEEEEEcCCCceeeee---ccCC-CceEEEEECCCCCEEEEEcCC------CEEEEEECCCCc
Confidence            3445566543      34889998876432221   1111 111222222 44566666643      358889887654


Q ss_pred             EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEE
Q 010571          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWY  257 (507)
Q Consensus       180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~  257 (507)
                      ....-.    .....-.+++...++ +++.|+.+     ..+.+||+.+..-..... .    .......+.+  ++.++
T Consensus       281 ~~~~~~----~~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~~-~----~~~~i~~~~~s~~~~~l  345 (425)
T 1r5m_A          281 SQNCFY----GHSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALSI-V----DGVPIFAGRISQDGQKY  345 (425)
T ss_dssp             CSEEEC----CCSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEEE-C----TTCCEEEEEECTTSSEE
T ss_pred             cceEec----CCCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEecc-c----CCccEEEEEEcCCCCEE
Confidence            332221    111222344455666 66666654     468999998766443211 1    1111223333  45677


Q ss_pred             EEeccCCCCCcceEEEEEcCcCe
Q 010571          258 IVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       258 v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      +.|+.++     .+.+||+.+..
T Consensus       346 ~~~~~dg-----~i~i~~~~~~~  363 (425)
T 1r5m_A          346 AVAFMDG-----QVNVYDLKKLN  363 (425)
T ss_dssp             EEEETTS-----CEEEEECHHHH
T ss_pred             EEEECCC-----eEEEEECCCCc
Confidence            7776443     47788876654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.89  E-value=0.27  Score=47.23  Aligned_cols=205  Identities=7%  Similarity=-0.050  Sum_probs=98.5

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                      ...++++|+.++....+..   .  ..........  ++ .|++... +........++.+|+.+..+..+..  ..+ .
T Consensus       167 ~~~l~~~d~~~g~~~~~~~---~--~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~--~~~-~  237 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQ---D--TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE--HAE-G  237 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEE---E--SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC--CCT-T
T ss_pred             cceEEEEECCCCcEEeecc---C--CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec--cCC-C
Confidence            4579999999988776652   1  1111122222  23 3544432 2111123579999998887766642  101 1


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCC-------
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN-------  264 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~-------  264 (507)
                      ..........++..+++...........++++|+.++....+..   .+  ... ....- +++++++.+...       
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CC--SEE-EEEECSSSSEEEEEECCC-------
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CC--CCC-CCccCCCCceEEEecCCcceeeccc
Confidence            11112233344433334332222212349999998887766532   12  111 22233 566666644221       


Q ss_pred             ----CCCcceEEEEEcCcCeeEEeccCCCCCC---CCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCCC
Q 010571          265 ----NNGCQETIVLNMTKLAWSILTSVKGRNP---LASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPR  337 (507)
Q Consensus       265 ----~~~~~d~~~~d~~~~~W~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~  337 (507)
                          ......++++|+.+.....+...+...-   ..+..........+++..|+......+  ...+|.+++....+..
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~--~~~l~~~~~~~~~~~~  389 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEG--VPAIYIADVPESYKHL  389 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS--SCEEEEEECCTTCC--
T ss_pred             cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCC--CceEEEEEEccccccc
Confidence                1123579999998877665543321000   000000111122334445554443332  4579999987765544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.89  E-value=0.2  Score=52.87  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=74.9

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCC---CCccceeeEEECCEEEE
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVL---PPMSDHCMVKWGTKLLI  105 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p---~~r~~~~~~~~~~~iyv  105 (507)
                      .+.++.++.||+...      .+.++.+|..|++  |+.-......           ..+   ......+.+..+++||+
T Consensus        71 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~~v~v  133 (677)
T 1kb0_A           71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRS-----------TGFKGCCDVVNRGVALWKGKVYV  133 (677)
T ss_dssp             CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGG-----------GGGGSSSCSCCCCCEEETTEEEE
T ss_pred             eCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcc-----------ccccccccCCCCCceEECCEEEE
Confidence            445667999999865      3569999999884  8764432210           000   00122345667888888


Q ss_pred             EcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EE
Q 010571          106 LGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WD  181 (507)
Q Consensus       106 ~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~  181 (507)
                      ...       ...++.+|..|++  |+...............+.++.++.+|+..+... ......++.||..|++  |+
T Consensus       134 ~~~-------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          134 GAW-------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             ECT-------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEE
T ss_pred             EcC-------CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEE
Confidence            642       2359999998874  7765310011111122234456788776543222 1124579999998876  87


Q ss_pred             Eee
Q 010571          182 AVE  184 (507)
Q Consensus       182 ~~~  184 (507)
                      .-.
T Consensus       206 ~~~  208 (677)
T 1kb0_A          206 WFS  208 (677)
T ss_dssp             EES
T ss_pred             ecc
Confidence            654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.88  E-value=0.098  Score=53.83  Aligned_cols=272  Identities=15%  Similarity=0.107  Sum_probs=139.2

Q ss_pred             CCCeEeeCCCCCeE-EeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECC--CCcee-Eeeecccccc
Q 010571            3 SGSWHLELPYDLWV-TLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLR--SLAWS-NLRLETELDA   76 (507)
Q Consensus         3 ~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~--t~~W~-~~~~~~~~~~   76 (507)
                      +.++.+|+.+.+-. +++      ....-|.+++.  +..+|+.+.      ...+.+||+.  +.+-. .++. +    
T Consensus       177 ~~V~viD~~t~~v~~~i~------~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~t~~~v~~i~~-G----  239 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLD------TGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWMKEPTTVAEIKI-G----  239 (567)
T ss_dssp             TEEEEEETTTCCEEEEEE------CSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSSSCCEEEEEEC-C----
T ss_pred             CeEEEEECCCCeEEEEEe------CCCCccceEECCCCCEEEEEcC------CCeEEEEECCCCCCcEeEEEec-C----
Confidence            44678888776544 233      22233444444  567787642      2469999995  54321 2221 1    


Q ss_pred             CccccCCccCCCCCccceeeEE----EC-CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC--------CCCcc
Q 010571           77 DKTEDSGLLEVLPPMSDHCMVK----WG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV--------PVARG  143 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~----~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~--------p~~r~  143 (507)
                                   ..-.+.+..    .+ ..+|+..-.      .+.+.+||..|.+=....+.+.+        |.+|.
T Consensus       240 -------------~~P~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          240 -------------SEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             -------------SEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             -------------CCCceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence                         111122333    13 456665432      34578889877654433222221        12232


Q ss_pred             cceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCc-EEEEEeCCCCCcCCCcEE
Q 010571          144 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLH  222 (507)
Q Consensus       144 ~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~  222 (507)
                      ....+..++..+++--.     ..+.++++|..+.....+..   .+..+.-|.+....++ ++|+...     ..|.+.
T Consensus       301 a~i~~s~~~~~~vv~~~-----~~g~v~~vd~~~~~~~~v~~---i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~  367 (567)
T 1qks_A          301 AAILASHYRPEFIVNVK-----ETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAAN-----ARNKLV  367 (567)
T ss_dssp             EEEEECSSSSEEEEEET-----TTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEG-----GGTEEE
T ss_pred             EEEEEcCCCCEEEEEec-----CCCeEEEEecCCCccceeee---eeccccccCceECCCCCEEEEEeC-----CCCeEE
Confidence            22122222333333211     24578889987766544442   2334555665555554 3444332     237899


Q ss_pred             EEECCCCcEEeeeec-CCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcC-----eeEEeccCCCCCCCC
Q 010571          223 VLDLQTNEWSQPEIK-GDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL-----AWSILTSVKGRNPLA  294 (507)
Q Consensus       223 ~~d~~~~~W~~~~~~-~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~-----~W~~~~~~~~~~p~~  294 (507)
                      ++|+.++.-...-.. +..|.|..+.. ...  .+.+|+.+-..    ...+.++|..+.     .|+.+..++...   
T Consensus       368 ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---  439 (567)
T 1qks_A          368 VIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFPALG---  439 (567)
T ss_dssp             EEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEECSC---
T ss_pred             EEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEecCC---
Confidence            999999875443334 55566544433 233  24677654211    125778887763     387765554321   


Q ss_pred             CCCCceEEEEEcCceEEEEEcccCC--CcCCeEEEEECCCC
Q 010571          295 SEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPR  333 (507)
Q Consensus       295 ~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~v~~~~~~~~  333 (507)
                        +.++.....++..++||---.+.  ...+.|.+||+.+.
T Consensus       440 --~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          440 --GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             --SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             --CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence              12233334566678888542221  13568999998765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.87  E-value=0.31  Score=45.92  Aligned_cols=239  Identities=11%  Similarity=-0.002  Sum_probs=121.1

Q ss_pred             CCEEEEEcCCCC-CccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCC
Q 010571           37 DQKLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKS  113 (507)
Q Consensus        37 ~~~lyv~GG~~~-~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~  113 (507)
                      ++.+|+...... ......++++|+.+++....-..+                 .. -+.++..  ++.+|+.++.    
T Consensus        52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-----------------~~-~~~~~~s~dg~~l~v~~~~----  109 (353)
T 3vgz_A           52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-----------------LK-PFGATINNTTQTLWFGNTV----  109 (353)
T ss_dssp             TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-----------------SC-CCSEEEETTTTEEEEEETT----
T ss_pred             CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-----------------CC-cceEEECCCCCEEEEEecC----
Confidence            457777653211 112457999999988654433222                 11 1223322  3567777653    


Q ss_pred             CCcceEEEEECCCCcEEEeecCCCCCCC-----cccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecC
Q 010571          114 SDSMIVRFIDLETNLCGVMETSGKVPVA-----RGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT  186 (507)
Q Consensus       114 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~-----r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~  186 (507)
                        ...+.+||+.+++-......+....+     ..-..++.-  ++.+|+.+...     .+.++.||+.+.+-...-..
T Consensus       110 --~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          110 --NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQN  182 (353)
T ss_dssp             --TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECC
T ss_pred             --CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecC
Confidence              23699999998875333221111110     011223332  34677765321     23599999988765443320


Q ss_pred             CCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--C-CEEEEEecc
Q 010571          187 QTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--D-ENWYIVGGG  262 (507)
Q Consensus       187 g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~  262 (507)
                          .....+.++...+ +.+|+...      .+.++++|+.+..-......+.. .+......+.+  + +.+|+.+..
T Consensus       183 ----~~~~~~~~~~s~dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~  251 (353)
T 3vgz_A          183 ----TGKMSTGLALDSEGKRLYTTNA------DGELITIDTADNKILSRKKLLDD-GKEHFFINISLDTARQRAFITDSK  251 (353)
T ss_dssp             ----CCTTCCCCEEETTTTEEEEECT------TSEEEEEETTTTEEEEEEECCCS-SSCCCEEEEEEETTTTEEEEEESS
T ss_pred             ----CCCccceEEECCCCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCC-CCCcccceEEECCCCCEEEEEeCC
Confidence                1111233444444 45665433      25788999988764432211111 12222222333  3 346655432


Q ss_pred             CCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          263 DNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       263 ~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                           .+.+++||+.+.........+.  +       ......+++..+|+.+..    .+.+.++|+.+.
T Consensus       252 -----~~~v~~~d~~~~~~~~~~~~~~--~-------~~~~~s~dg~~l~v~~~~----~~~v~~~d~~~~  304 (353)
T 3vgz_A          252 -----AAEVLVVDTRNGNILAKVAAPE--S-------LAVLFNPARNEAYVTHRQ----AGKVSVIDAKSY  304 (353)
T ss_dssp             -----SSEEEEEETTTCCEEEEEECSS--C-------CCEEEETTTTEEEEEETT----TTEEEEEETTTT
T ss_pred             -----CCEEEEEECCCCcEEEEEEcCC--C-------ceEEECCCCCEEEEEECC----CCeEEEEECCCC
Confidence                 2468999998876544322221  1       123344555667776543    257888888654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.087  Score=50.33  Aligned_cols=200  Identities=13%  Similarity=0.163  Sum_probs=101.2

Q ss_pred             CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--C--CEEEEEcccCCCC
Q 010571           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKKS  113 (507)
Q Consensus        38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~  113 (507)
                      +.+++.|+.+     ..+.+||+.++.|..+.....                ......++.+  +  +.+++.|+.+   
T Consensus        69 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~l~~~~~d---  124 (379)
T 3jrp_A           69 GTILASCSYD-----GKVLIWKEENGRWSQIAVHAV----------------HSASVNSVQWAPHEYGPLLLVASSD---  124 (379)
T ss_dssp             CSEEEEEETT-----SCEEEEEEETTEEEEEEEECC----------------CSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred             CCEEEEeccC-----CEEEEEEcCCCceeEeeeecC----------------CCcceEEEEeCCCCCCCEEEEecCC---
Confidence            5666676643     458899999998877665431                1122233333  3  5566776643   


Q ss_pred             CCcceEEEEECCCCcEE-EeecCCCCCCCcccceEEEE--------------CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          114 SDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLV--------------GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       114 ~~~~~~~~~d~~t~~W~-~~~~~g~~p~~r~~~~~~~~--------------~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                         ..+.+||+.+..-. ..... ..+.+  -.+++..              ++.+++.|+.+.      .+.+||+.+.
T Consensus       125 ---~~i~v~d~~~~~~~~~~~~~-~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~  192 (379)
T 3jrp_A          125 ---GKVSVVEFKENGTTSPIIID-AHAIG--VNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSD  192 (379)
T ss_dssp             ---SEEEEEECCTTSCCCEEEEE-CCTTC--EEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETT
T ss_pred             ---CcEEEEecCCCCceeeEEec-CCCCc--eEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCC
Confidence               34888888776321 11100 00111  1112221              356777777543      5888887654


Q ss_pred             c--EEEeecCCCCCCCCCCceEEEEcC---cEEEEEeCCCCCcCCCcEEEEECCCCc--EEeeeecCCCCCCCcceEEEE
Q 010571          179 T--WDAVEVTQTPPAPRYDHSAALHAN---RYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGIT  251 (507)
Q Consensus       179 ~--W~~~~~~g~~p~~r~~~~~~~~~~---~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~  251 (507)
                      .  +........  ....-.+++...+   +.+++.|+.+     ..+.+||+.+..  +.... ..... .......+.
T Consensus       193 ~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~-~~~~~-~~~~v~~~~  263 (379)
T 3jrp_A          193 AQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQD-----RTCIIWTQDNEQGPWKKTL-LKEEK-FPDVLWRAS  263 (379)
T ss_dssp             TTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETT-----SCEEEEEESSTTSCCEEEE-SSSSC-CSSCEEEEE
T ss_pred             CcceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeCC-----CEEEEEeCCCCCccceeee-ecccc-CCCcEEEEE
Confidence            3  444332111  1111223344455   6677887765     357888877653  11111 01111 111122333


Q ss_pred             E--CCEEEEEeccCCCCCcceEEEEEcC-cCeeEEeccC
Q 010571          252 I--DENWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSV  287 (507)
Q Consensus       252 ~--~~~l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~  287 (507)
                      +  ++.++++|+.++     .+.+|++. ...|..+..+
T Consensus       264 ~s~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~  297 (379)
T 3jrp_A          264 WSLSGNVLALSGGDN-----KVTLWKENLEGKWEPAGEV  297 (379)
T ss_dssp             ECSSSCCEEEEESSS-----SEEEEEEEETTEEEEEEEE
T ss_pred             EcCCCCEEEEecCCC-----cEEEEeCCCCCccccccce
Confidence            3  556777776543     36777766 4678776554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.85  E-value=0.16  Score=47.49  Aligned_cols=270  Identities=12%  Similarity=-0.042  Sum_probs=124.5

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCcc-ccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCc
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSPR-YKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r-~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~   78 (507)
                      +..++.+|+.+.+-.....   .+... .-+.++..  ++.+|+.+..     ...+++||+.++.-...-..+..    
T Consensus        10 ~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~----   77 (337)
T 1pby_B           10 PDKLVVIDTEKMAVDKVIT---IADAGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEE---CTTCTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECCBT----
T ss_pred             CCeEEEEECCCCcEEEEEE---cCCCCCCccceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCCc----
Confidence            4457789988776543321   12110 12233333  3467777652     24699999988765432211100    


Q ss_pred             cccCCccCCCCCccceeeEEE--CCEEEEEcccC---CCCC--CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-
Q 010571           79 TEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHY---KKSS--DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-  150 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~---~~~~--~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-  150 (507)
                             . .....-+.++..  ++.||+.....   ....  ....+.+||+.+++.......+..     -..++.. 
T Consensus        78 -------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-----~~~~~~s~  144 (337)
T 1pby_B           78 -------E-ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-----ITMLAWAR  144 (337)
T ss_dssp             -------T-EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-----CCCEEECT
T ss_pred             -------c-cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-----cceeEECC
Confidence                   0 000011122222  34677764210   0100  135699999998876543321111     1222222 


Q ss_pred             CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCC------------C--
Q 010571          151 GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH------------S--  215 (507)
Q Consensus       151 ~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~------------~--  215 (507)
                      ++ .||+.+         +.++.+|+.+++-...-..+..+.+.   .. .-.+..+|+.+....            +  
T Consensus       145 dg~~l~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~---~~-s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~  211 (337)
T 1pby_B          145 DGSKLYGLG---------RDLHVMDPEAGTLVEDKPIQSWEAET---YA-QPDVLAVWNQHESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             TSSCEEEES---------SSEEEEETTTTEEEEEECSTTTTTTT---BC-CCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred             CCCEEEEeC---------CeEEEEECCCCcEeeeeeccccCCCc---ee-CCCccEEeeeccCCCceeeeeecccccccc
Confidence            33 466652         36999999888755433222211111   11 111122222211110            0  


Q ss_pred             ----cCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCC
Q 010571          216 ----IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG  289 (507)
Q Consensus       216 ----~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~  289 (507)
                          .....++++|+.+..-..+...   +.. .....+.+  +++.++++       .+.+++||+.+..-......+.
T Consensus       212 ~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~-~~~~~~~~s~dg~~l~~~-------~~~v~~~d~~~~~~~~~~~~~~  280 (337)
T 1pby_B          212 ADPTAYRTGLLTMDLETGEMAMREVR---IMD-VFYFSTAVNPAKTRAFGA-------YNVLESFDLEKNASIKRVPLPH  280 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEE---ECS-SCEEEEEECTTSSEEEEE-------ESEEEEEETTTTEEEEEEECSS
T ss_pred             ccccccccceEEEeCCCCCceEeecC---CCC-CceeeEEECCCCCEEEEe-------CCeEEEEECCCCcCcceecCCC
Confidence                0011588999988776533221   111 11222333  33333333       1478999998775433222211


Q ss_pred             CCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          290 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       290 ~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                              ........+++..|++. +.    .+.+.++|+.+.
T Consensus       281 --------~~~~~~~s~dg~~l~~~-~~----~~~i~v~d~~~~  311 (337)
T 1pby_B          281 --------SYYSVNVSTDGSTVWLG-GA----LGDLAAYDAETL  311 (337)
T ss_dssp             --------CCCEEEECTTSCEEEEE-SB----SSEEEEEETTTC
T ss_pred             --------ceeeEEECCCCCEEEEE-cC----CCcEEEEECcCC
Confidence                    11223334445567664 32    367899998654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.84  E-value=0.28  Score=45.97  Aligned_cols=235  Identities=11%  Similarity=0.035  Sum_probs=116.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE-EC-CEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WG-TKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~  114 (507)
                      .+.+|+.+..     ...+.+||+.+++....-..+                  .....++. -+ +.||+.+..     
T Consensus         9 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~s~dg~~l~~~~~~-----   60 (331)
T 3u4y_A            9 SNFGIVVEQH-----LRRISFFSTDTLEILNQITLG------------------YDFVDTAITSDCSNVVVTSDF-----   60 (331)
T ss_dssp             CCEEEEEEGG-----GTEEEEEETTTCCEEEEEECC------------------CCEEEEEECSSSCEEEEEEST-----
T ss_pred             CCEEEEEecC-----CCeEEEEeCcccceeeeEEcc------------------CCcceEEEcCCCCEEEEEeCC-----
Confidence            4667777652     357999999998875544322                  11112222 23 457776652     


Q ss_pred             CcceEEEEECCCCcE-EEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 010571          115 DSMIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~  191 (507)
                       ...+++||+.++.. ......+..  +.  ++++..  +..+| .+.....   ...+.+||+.+++.......+.   
T Consensus        61 -~~~i~~~d~~~~~~~~~~~~~~~~--~~--~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~---  128 (331)
T 3u4y_A           61 -CQTLVQIETQLEPPKVVAIQEGQS--SM--ADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPY---  128 (331)
T ss_dssp             -TCEEEEEECSSSSCEEEEEEECSS--CC--CCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCT---
T ss_pred             -CCeEEEEECCCCceeEEecccCCC--Cc--cceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCC---
Confidence             23699999998875 222211111  11  112222  33566 3322111   2279999999887655433222   


Q ss_pred             CCCCceEEEEcCc-EEEEEeCCCCCcCCCc-EEEEECCCCc-EEeeeecCCCCCCCcceEEEEE--CCE-EEEEeccCCC
Q 010571          192 PRYDHSAALHANR-YLIVFGGCSHSIFFND-LHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI--DEN-WYIVGGGDNN  265 (507)
Q Consensus       192 ~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~-i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~  265 (507)
                        ..+.++...++ .+|+.+...     +. +.+|++.... ...... ...+.... ...+.+  +++ +|+.+..   
T Consensus       129 --~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~-~~~~~~~~-~~~~~~spdg~~l~v~~~~---  196 (331)
T 3u4y_A          129 --DAVGIAISPNGNGLILIDRSS-----ANTVRRFKIDADGVLFDTGQ-EFISGGTR-PFNITFTPDGNFAFVANLI---  196 (331)
T ss_dssp             --TEEEEEECTTSSCEEEEEETT-----TTEEEEEEECTTCCEEEEEE-EEECSSSS-EEEEEECTTSSEEEEEETT---
T ss_pred             --CccceEECCCCCEEEEEecCC-----CceEEEEEECCCCcEeecCC-ccccCCCC-ccceEECCCCCEEEEEeCC---
Confidence              12455555554 466665432     45 7777765432 111100 00111111 223333  344 6666532   


Q ss_pred             CCcceEEEEEcCcCee-EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCC
Q 010571          266 NGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       266 ~~~~d~~~~d~~~~~W-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w  335 (507)
                        .+.+.+||+.+... ..+..++..      .........+++.+||+....    .+.++++|+.+...
T Consensus       197 --~~~v~v~d~~~~~~~~~~~~~~~~------~~~~~~~~spdg~~l~v~~~~----~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          197 --GNSIGILETQNPENITLLNAVGTN------NLPGTIVVSRDGSTVYVLTES----TVDVFNFNQLSGTL  255 (331)
T ss_dssp             --TTEEEEEECSSTTSCEEEEEEECS------SCCCCEEECTTSSEEEEECSS----EEEEEEEETTTTEE
T ss_pred             --CCeEEEEECCCCcccceeeeccCC------CCCceEEECCCCCEEEEEEcC----CCEEEEEECCCCce
Confidence              23688999887764 112122111      111223344455667776542    34588889876544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.83  E-value=0.45  Score=47.07  Aligned_cols=145  Identities=12%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ++.+++.|+.+      ..+.+||+.+.+-...-. +   ....-.+++...++..++.|+.+     ..+.+||+.++.
T Consensus       279 ~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~  343 (464)
T 3v7d_B          279 HGNIVVSGSYD------NTLIVWDVAQMKCLYILS-G---HTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGE  343 (464)
T ss_dssp             ETTEEEEEETT------SCEEEEETTTTEEEEEEC-C---CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTE
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEec-C---CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence            44556666643      359999998766443321 1   11122234444555567777754     458999998765


Q ss_pred             EEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceE
Q 010571          231 WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH  310 (507)
Q Consensus       231 W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  310 (507)
                      -...     .........++.+++..++.|+.++     .+.+||+.+..-.......        .........+++ .
T Consensus       344 ~~~~-----~~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~-~  404 (464)
T 3v7d_B          344 LMYT-----LQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYHHT--------NLSAITTFYVSD-N  404 (464)
T ss_dssp             EEEE-----ECCCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEECT--------TCCCEEEEEECS-S
T ss_pred             EEEE-----EeCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeecCC--------CCccEEEEEeCC-C
Confidence            4332     1112222344556677777777543     4788888775422211110        111122222333 4


Q ss_pred             EEEEcccCCCcCCeEEEEECCCCC
Q 010571          311 LVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       311 l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                      +++.|+ +    ..+.++|+.+..
T Consensus       405 ~l~~~~-d----g~i~iwd~~~g~  423 (464)
T 3v7d_B          405 ILVSGS-E----NQFNIYNLRSGK  423 (464)
T ss_dssp             EEEEEE-T----TEEEEEETTTCC
T ss_pred             EEEEec-C----CeEEEEECCCCc
Confidence            666666 2    468889987653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.73  E-value=0.36  Score=46.31  Aligned_cols=211  Identities=10%  Similarity=-0.011  Sum_probs=93.8

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~  194 (507)
                      ...++.+|+.++.-..+...   + ....+....- ++..+++............++.+|+.+.....+..   ......
T Consensus       167 ~~~l~~~d~~~g~~~~l~~~---~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~  239 (388)
T 3pe7_A          167 CCRLMRVDLKTGESTVILQE---N-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGES  239 (388)
T ss_dssp             CEEEEEEETTTCCEEEEEEE---S-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEE
T ss_pred             cceEEEEECCCCceEEeecC---C-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcc
Confidence            46799999999876666421   1 1122222222 34433333222211224579999998777665542   111111


Q ss_pred             CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCC--CCcceEEEEECCEEEEEeccC----CCCCc
Q 010571          195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT--GRAGHAGITIDENWYIVGGGD----NNNGC  268 (507)
Q Consensus       195 ~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~--~r~~~~~~~~~~~l~v~GG~~----~~~~~  268 (507)
                      ........++..+++...........++++|+.++.-+.+........  .........-+++.+++.-..    .....
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~  319 (388)
T 3pe7_A          240 CTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEND  319 (388)
T ss_dssp             EEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCC
T ss_pred             cccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCC
Confidence            112223344433333222211111249999999988666532111000  000000122233222221100    11223


Q ss_pred             ceEEEEEcCcCeeEEeccCCCCCCC---CCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCC
Q 010571          269 QETIVLNMTKLAWSILTSVKGRNPL---ASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       269 ~d~~~~d~~~~~W~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w  335 (507)
                      ..++++|+.+..-..+.........   .+..........+++..|+......+  ...+|.+++....|
T Consensus       320 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g--~~~l~~~~l~~~~~  387 (388)
T 3pe7_A          320 PFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHG--KPALYLATLPESVW  387 (388)
T ss_dssp             CEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS--SCEEEEEECCGGGG
T ss_pred             CEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCC--ceeEEEEECChhcc
Confidence            5799999998887766543320000   00000111223344445555443332  45699999865443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=96.72  E-value=0.35  Score=44.33  Aligned_cols=252  Identities=8%  Similarity=-0.030  Sum_probs=126.7

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .+..||+. .....++....   ...-+++++. ++.+|+....     ...+.+||+. +.+........         
T Consensus        42 ~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~~---------  102 (300)
T 2qc5_A           42 KISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQP---------  102 (300)
T ss_dssp             EEEEECTT-SCEEEEECSST---TCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSST---------
T ss_pred             eEEEECCC-CceEEEECCCC---CCcceeEEECCCCCEEEEecC-----CCeEEEECCC-CCeEEecCCCC---------
Confidence            45677777 66666542111   1122333333 4667776431     2458899988 77654432110         


Q ss_pred             CccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcC
Q 010571           83 GLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGG  159 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG  159 (507)
                             ...-++++.. ++.||+....      ...+..||+. ++......    +..........+  ++.+|+...
T Consensus       103 -------~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A          103 -------DSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDL----PNKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             -------TCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEEC----SSTTCCEEEEEECTTSSEEEEET
T ss_pred             -------CCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccC----CCCCCCceeEEECCCCCEEEEec
Confidence                   1122333333 5788886532      2358899988 66665432    211112222333  356777542


Q ss_pred             cCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCC
Q 010571          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGD  239 (507)
Q Consensus       160 ~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~  239 (507)
                      .      .+.+++||+ +++.......+..   ..-..++...++.+|+....     .+.+.+||+ ++.+.....   
T Consensus       165 ~------~~~i~~~~~-~g~~~~~~~~~~~---~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~---  225 (300)
T 2qc5_A          165 Q------NNSIGRITN-TGKLEEYPLPTNA---AAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDI---  225 (300)
T ss_dssp             T------TTEEEEECT-TCCEEEEECSSTT---CCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC---
T ss_pred             C------CCeEEEECC-CCcEEEeeCCCCC---CCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEEC---
Confidence            1      246999998 6777665421111   11123334345668775432     146889998 566655421   


Q ss_pred             CCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEccc
Q 010571          240 LVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGY  317 (507)
Q Consensus       240 ~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~  317 (507)
                       +........+.+  ++++|+....     .+.+.+||+ +.....+.....       ......+.++.++.|++.+. 
T Consensus       226 -~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~~-------~~~~~~i~~~~~g~l~v~~~-  290 (300)
T 2qc5_A          226 -PTPNARPHAITAGKNSEIWFTEWG-----ANQIGRITN-DNTIQEYQLQTE-------NAEPHGITFGKDGSVWFALK-  290 (300)
T ss_dssp             -SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECT-TSCEEEEECCST-------TCCCCCEEECTTSCEEEECS-
T ss_pred             -CCCCCCceEEEECCCCCEEEeccC-----CCeEEEECC-CCcEEEEECCcc-------CCccceeEeCCCCCEEEEcc-
Confidence             111222233344  4578776522     235888988 455554322111       01112233444445666432 


Q ss_pred             CCCcCCeEEEEECC
Q 010571          318 NGKYNNEVFVMRLK  331 (507)
Q Consensus       318 ~~~~~~~v~~~~~~  331 (507)
                          . .++.|++.
T Consensus       291 ----~-~i~~~~p~  299 (300)
T 2qc5_A          291 ----C-KIGKLNLN  299 (300)
T ss_dssp             ----S-EEEEEEEC
T ss_pred             ----C-ceEEeCCC
Confidence                2 67777764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.72  E-value=0.53  Score=46.36  Aligned_cols=225  Identities=15%  Similarity=0.151  Sum_probs=116.4

Q ss_pred             CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcc
Q 010571           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM  117 (507)
Q Consensus        38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  117 (507)
                      +.+++.|+.+     ..+.+||+.++.-...-..                  ......++..++..++.|+.+      .
T Consensus       169 ~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~------------------h~~~v~~~~~~~~~l~s~s~d------g  219 (445)
T 2ovr_B          169 DNIIISGSTD-----RTLKVWNAETGECIHTLYG------------------HTSTVRCMHLHEKRVVSGSRD------A  219 (445)
T ss_dssp             TTEEEEEETT-----SCEEEEETTTTEEEEEECC------------------CSSCEEEEEEETTEEEEEETT------S
T ss_pred             CCEEEEEeCC-----CeEEEEECCcCcEEEEECC------------------CCCcEEEEEecCCEEEEEeCC------C
Confidence            4466666633     4588999988754322111                  111223333445556666543      3


Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCce
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS  197 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~  197 (507)
                      .+.+||+.+++-.....     .......++.+++..++.|+.+      ..+.+||+.+.+-...-. +    ......
T Consensus       220 ~i~~wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~-~----~~~~v~  283 (445)
T 2ovr_B          220 TLRVWDIETGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLHTLQ-G----HTNRVY  283 (445)
T ss_dssp             EEEEEESSSCCEEEEEE-----CCSSCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEEEEC-C----CSSCEE
T ss_pred             EEEEEECCCCcEEEEEc-----CCcccEEEEEECCCEEEEEcCC------CEEEEEECCCCcEeEEec-C----CCCceE
Confidence            58899988875433221     1112223344577777777653      358899987765433221 1    111223


Q ss_pred             EEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcC
Q 010571          198 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       198 ~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~  277 (507)
                      .+.+.+. .++.|+.+     ..+.+||+.+..-...-     ........+...++..++.|+.++     .+.+||+.
T Consensus       284 ~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~dg-----~i~vwd~~  347 (445)
T 2ovr_B          284 SLQFDGI-HVVSGSLD-----TSIRVWDVETGNCIHTL-----TGHQSLTSGMELKDNILVSGNADS-----TVKIWDIK  347 (445)
T ss_dssp             EEEECSS-EEEEEETT-----SCEEEEETTTCCEEEEE-----CCCCSCEEEEEEETTEEEEEETTS-----CEEEEETT
T ss_pred             EEEECCC-EEEEEeCC-----CeEEEEECCCCCEEEEE-----cCCcccEEEEEEeCCEEEEEeCCC-----eEEEEECC
Confidence            3344444 66666654     45889999877643321     111122233445566777777543     47889987


Q ss_pred             cCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571          278 KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       278 ~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                      +..-..  .+...   ..+......+..++  .+++.|+.+    ..+.++|+.+..
T Consensus       348 ~~~~~~--~~~~~---~~~~~~v~~~~~~~--~~l~s~~~d----g~v~iwd~~~~~  393 (445)
T 2ovr_B          348 TGQCLQ--TLQGP---NKHQSAVTCLQFNK--NFVITSSDD----GTVKLWDLKTGE  393 (445)
T ss_dssp             TCCEEE--EECST---TSCSSCEEEEEECS--SEEEEEETT----SEEEEEETTTCC
T ss_pred             CCcEEE--EEccC---CCCCCCEEEEEECC--CEEEEEeCC----CeEEEEECCCCc
Confidence            664322  11110   01122233333443  356667654    468888876543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=96.68  E-value=0.3  Score=45.88  Aligned_cols=160  Identities=15%  Similarity=0.076  Sum_probs=78.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-C-CEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G-TKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~  114 (507)
                      ++.+|+.++.     ...++++|+.+++....-..+.                ...-+.++.. + +.+|+.+..     
T Consensus        10 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~----------------~~~~~~~~~s~dg~~~~v~~~~-----   63 (349)
T 1jmx_B           10 GHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPD----------------KFGPGTAMMAPDNRTAYVLNNH-----   63 (349)
T ss_dssp             TCEEEEEEET-----TTEEEEEETTTTEEEEEEECSS----------------CCSSCEEEECTTSSEEEEEETT-----
T ss_pred             CCEEEEEeCC-----CCeEEEEECCCCcEEEEEecCC----------------CCCCceeEECCCCCEEEEEeCC-----
Confidence            5778887763     3569999999887544322211                0011222222 3 457777532     


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCC--CcccceEEEE-CC-EEEEEcCc--CCCCC---ccCcEEEEEcCCCcEEEeec
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPV--ARGGHSVTLV-GS-RLIIFGGE--DRSRK---LLNDVHFLDLETMTWDAVEV  185 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~--~r~~~~~~~~-~~-~l~~~GG~--~~~~~---~~~~~~~~d~~t~~W~~~~~  185 (507)
                       ...+++||+.+++-......+..|.  ...-..++.. ++ .+|+.+..  .....   ..+.+.+||+.+++-.....
T Consensus        64 -~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  142 (349)
T 1jmx_B           64 -YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR  142 (349)
T ss_dssp             -TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred             -CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence             2459999999887554332111111  1111222222 33 55554421  00000   12579999987743211110


Q ss_pred             CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       186 ~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ....  ++...+++...++.+|+.+        ++++++|+.++....
T Consensus       143 ~~~~--~~~~~~~~~s~dg~l~~~~--------~~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          143 TFPM--PRQVYLMRAADDGSLYVAG--------PDIYKMDVKTGKYTV  180 (349)
T ss_dssp             EEEC--CSSCCCEEECTTSCEEEES--------SSEEEECTTTCCEEE
T ss_pred             eccC--CCcccceeECCCCcEEEcc--------CcEEEEeCCCCceec
Confidence            0011  2223344455566666632        248899988776543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.67  E-value=0.39  Score=45.42  Aligned_cols=228  Identities=14%  Similarity=0.115  Sum_probs=112.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|..++.-...-...                  .....++.+  ++.+++.||.+    
T Consensus        66 d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~s~~~d----  118 (340)
T 1got_B           66 DSRLLLSASQD-----GKLIIWDSYTTNKVHAIPLR------------------SSWVMTCAYAPSGNYVACGGLD----  118 (340)
T ss_dssp             TSSEEEEEETT-----TEEEEEETTTCCEEEEEECS------------------SSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCcceEeecC------------------CccEEEEEECCCCCEEEEEeCC----
Confidence            45566666643     45888998876533222111                  111222222  56666777653    


Q ss_pred             CcceEEEEECCCCc--EEEeecCCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCC
Q 010571          115 DSMIVRFIDLETNL--CGVMETSGKVPVARGG-HSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP  190 (507)
Q Consensus       115 ~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~-~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p  190 (507)
                        ..+.+||+.+..  .....   .+...... .++... ++. ++.|+.+      ..+.++|+.+.+-...-. +   
T Consensus       119 --~~v~iw~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~~~-~---  182 (340)
T 1got_B          119 --NICSIYNLKTREGNVRVSR---ELAGHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTTFT-G---  182 (340)
T ss_dssp             --CEEEEEETTTCSBSCEEEE---EEECCSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEEEC-C---
T ss_pred             --CeEEEEECccCCCcceeEE---EecCCCccEEEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEEEc-C---
Confidence              347788877642  11111   00001111 112222 445 4445432      358899998876543321 1   


Q ss_pred             CCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCc
Q 010571          191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGC  268 (507)
Q Consensus       191 ~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~  268 (507)
                      ....-.+++...++.+++.|+.+     ..+.+||+.+..-...-     ......-.++.+  ++.+++.|+.++    
T Consensus       183 h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~l~s~s~d~----  248 (340)
T 1got_B          183 HTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDA----  248 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCSEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS----
T ss_pred             CCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCeeEEEE-----cCCcCCEEEEEEcCCCCEEEEEcCCC----
Confidence            11112233444566677777765     45888998876543321     111111222333  567777777544    


Q ss_pred             ceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          269 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       269 ~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                       .+.+||+.+..-...  ....    ........+.+..+..+++.|+.+    ..+.++|...
T Consensus       249 -~v~iwd~~~~~~~~~--~~~~----~~~~~v~~~~~s~~g~~l~~g~~d----~~i~vwd~~~  301 (340)
T 1got_B          249 -TCRLFDLRADQELMT--YSHD----NIICGITSVSFSKSGRLLLAGYDD----FNCNVWDALK  301 (340)
T ss_dssp             -CEEEEETTTTEEEEE--ECCT----TCCSCEEEEEECTTSSEEEEEETT----SEEEEEETTT
T ss_pred             -cEEEEECCCCcEEEE--EccC----CcccceEEEEECCCCCEEEEECCC----CeEEEEEccc
Confidence             377888876643221  1110    011123344444444566777754    4577778644

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=96.67  E-value=0.14  Score=54.33  Aligned_cols=146  Identities=12%  Similarity=0.020  Sum_probs=70.6

Q ss_pred             cEEEEEcCC-CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCC-CCCcc
Q 010571          169 DVHFLDLET-MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV-TGRAG  246 (507)
Q Consensus       169 ~~~~~d~~t-~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~  246 (507)
                      .++.+|+.+ .+-..+...  .........++. .++..++++..+.......++++|+.++....+....... .....
T Consensus       264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             EEEEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence            688889888 775555321  011111223333 4544444444322233467999999998876653211100 00111


Q ss_pred             eEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCce-EE-EEEcCceEEEEEcccCCCcCCe
Q 010571          247 HAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSV-CS-AIIEGEHHLVAFGGYNGKYNNE  324 (507)
Q Consensus       247 ~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~-~~-~~~~~~~~l~v~GG~~~~~~~~  324 (507)
                      ..+..-++++++.++.+   ....+|.+|.... ...+..-         .... .. ...+++..|++.+..++.....
T Consensus       341 ~~~~spdg~~~~~~~~~---g~~~l~~~~~~~~-~~~l~~~---------~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~  407 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERT---GFQHLYRIDSKGK-AAALTHG---------NWSVDELLAVDEKAGLAYFRAGIESARESQ  407 (741)
T ss_dssp             CCEECTTSCEEEEECTT---SSCEEEEECSSSC-EEESCCS---------SSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred             ceEECCCCeEEEEecCC---CccEEEEEcCCCC-eeeeeec---------ceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence            12222356666665433   2357888887666 5544321         1111 11 1334445566555544333445


Q ss_pred             EEEEEC
Q 010571          325 VFVMRL  330 (507)
Q Consensus       325 v~~~~~  330 (507)
                      +|..++
T Consensus       408 l~~~~~  413 (741)
T 2ecf_A          408 IYAVPL  413 (741)
T ss_dssp             EEEEET
T ss_pred             EEEEEc
Confidence            666665

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=96.64  E-value=0.49  Score=45.00  Aligned_cols=111  Identities=9%  Similarity=0.024  Sum_probs=52.3

Q ss_pred             EEEEcCCCCCccCCc--eEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCc
Q 010571           40 LYIVGGSRNGRFLSD--VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDS  116 (507)
Q Consensus        40 lyv~GG~~~~~~~~~--~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~  116 (507)
                      .+++|.+.... ...  ++.+|+.++.+..+... ..               ..-.+.+..-+ ..||+.+.... ....
T Consensus        15 ~~~vg~y~~~~-~~~i~~~~~d~~~g~~~~~~~~-~~---------------~~p~~l~~spdg~~l~~~~~~~~-~~~~   76 (361)
T 3scy_A           15 TMLVGTYTSGN-SKGIYTFRFNEETGESLPLSDA-EV---------------ANPSYLIPSADGKFVYSVNEFSK-DQAA   76 (361)
T ss_dssp             EEEEEECCSSS-CCEEEEEEEETTTCCEEEEEEE-EC---------------SCCCSEEECTTSSEEEEEECCSS-TTCE
T ss_pred             EEEEEeccCCC-CCCEEEEEEeCCCCCEEEeecc-cC---------------CCCceEEECCCCCEEEEEEccCC-CCCc
Confidence            44456544321 223  55667788888776643 11               11112222223 45666554321 1113


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      -.+|.++..++..+.+..   .+..........+++ .||+.+..      .+.+.+|++.+
T Consensus        77 v~~~~~~~~~g~~~~~~~---~~~~~~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~  129 (361)
T 3scy_A           77 VSAFAFDKEKGTLHLLNT---QKTMGADPCYLTTNGKNIVTANYS------GGSITVFPIGQ  129 (361)
T ss_dssp             EEEEEEETTTTEEEEEEE---EECSSSCEEEEEECSSEEEEEETT------TTEEEEEEBCT
T ss_pred             EEEEEEeCCCCcEEEeeE---eccCCCCcEEEEECCCEEEEEECC------CCEEEEEEeCC
Confidence            345666777777776652   221111222222255 56655422      23588888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.60  E-value=0.42  Score=43.76  Aligned_cols=213  Identities=9%  Similarity=-0.037  Sum_probs=108.3

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCC
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      .+.||+. .....+..+.   ....-++++.. ++.||+....     ...+++||+ ++.........           
T Consensus        80 i~~~~~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~-----------  138 (299)
T 2z2n_A           80 IGRITKK-GIIKEYTLPN---PDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DGKIREYELPN-----------  138 (299)
T ss_dssp             EEEECTT-SCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSS-----------
T ss_pred             EEEECCC-CcEEEEeCCC---cCCCceeeEECCCCCEEEEecC-----CceEEEECC-CCCEEEecCCC-----------
Confidence            5677765 4555544211   11223344444 4678776432     246889998 66655443211           


Q ss_pred             ccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCc
Q 010571           84 LLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGE  160 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~  160 (507)
                           ....-++++.. +++||+....      ...+++||+ +++......    +..........+  ++.+|+....
T Consensus       139 -----~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          139 -----KGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDITEFKI----PTPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             -----TTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETT
T ss_pred             -----CCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEeeC----CCCCCcceeEEECCCCCEEEEccC
Confidence                 01122333333 5678876421      235999999 777776532    111112222333  3577775432


Q ss_pred             CCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCC
Q 010571          161 DRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL  240 (507)
Q Consensus       161 ~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~  240 (507)
                            .+.+.+||+ ++..........   ...-.+++...++.+|+....     .+.+.+||+ ++.......... 
T Consensus       203 ------~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~-  265 (299)
T 2z2n_A          203 ------GNKIGRITT-SGEITEFKIPTP---NARPHAITAGAGIDLWFTEWG-----ANKIGRLTS-NNIIEEYPIQIK-  265 (299)
T ss_dssp             ------TTEEEEECT-TCCEEEEECSST---TCCEEEEEECSTTCEEEEETT-----TTEEEEEET-TTEEEEEECSSS-
T ss_pred             ------CceEEEECC-CCcEEEEECCCC---CCCceeEEECCCCCEEEeccC-----CceEEEECC-CCceEEEeCCCC-
Confidence                  346999999 777766532111   111223444445668776422     256899998 455544321111 


Q ss_pred             CCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          241 VTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       241 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                        ...-++++.-++.+|+...      .+.+.+|++.+.
T Consensus       266 --~~~~~~i~~~~g~l~v~~~------~~~l~~~~~~~~  296 (299)
T 2z2n_A          266 --SAEPHGICFDGETIWFAME------CDKIGKLTLIKD  296 (299)
T ss_dssp             --SCCEEEEEECSSCEEEEET------TTEEEEEEEC--
T ss_pred             --CCccceEEecCCCEEEEec------CCcEEEEEcCcc
Confidence              1122233344556776542      135778887665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.57  E-value=0.085  Score=56.46  Aligned_cols=192  Identities=11%  Similarity=0.088  Sum_probs=98.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--C--CEEEEEcccCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G--TKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~  112 (507)
                      ++.+++.||.+     ..+.+||..++++..+.....                ......++.+  +  +.+++.|+.+. 
T Consensus        20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~----------------h~~~V~~l~~s~~~~~~~l~s~s~Dg-   77 (753)
T 3jro_A           20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTG----------------HEGPVWRVDWAHPKFGTILASCSYDG-   77 (753)
T ss_dssp             SSCCEEEEETT-----TEEEEEEEETTEEEEEEEECC----------------CSSCEEEEEECCTTSCSEEEEEETTS-
T ss_pred             CCCeEEEEECC-----CcEEEEecCCCCCccceeccC----------------CcCceEEEEecCCCCCCEEEEEeCCC-
Confidence            35566666633     458888888777766655431                1222233333  2  56777776532 


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--C--CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCC
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT  188 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~  188 (507)
                           .+.+||+.++.|.....   .........++.+  +  +.+++.|+.+      ..+.+||+.+..-........
T Consensus        78 -----~I~vwd~~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~  143 (753)
T 3jro_A           78 -----KVLIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDA  143 (753)
T ss_dssp             -----CEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEEC
T ss_pred             -----eEEEEECCCCccccccc---ccCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeec
Confidence                 38889998988776653   2222222233333  2  5677777753      358888887652111110001


Q ss_pred             CCCCCCCceEEEEc-------------CcEEEEEeCCCCCcCCCcEEEEECCCC--cEEeeeecCCCCCCCcceEEEEE-
Q 010571          189 PPAPRYDHSAALHA-------------NRYLIVFGGCSHSIFFNDLHVLDLQTN--EWSQPEIKGDLVTGRAGHAGITI-  252 (507)
Q Consensus       189 ~p~~r~~~~~~~~~-------------~~~l~i~GG~~~~~~~~~i~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~-  252 (507)
                      .+  ..-.++....             ++.+++.|+.+     ..+.+||+.+.  .+..+..   .......-.++.+ 
T Consensus       144 ~~--~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~---~~~h~~~V~~l~~s  213 (753)
T 3jro_A          144 HA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWS  213 (753)
T ss_dssp             CS--SCEEEEEECCCC---------CGGGCCEEEEETT-----SCEEEEEEETTTTEEEEEEE---ECCCSSCEEEEEEC
T ss_pred             CC--CceEEEEecCcccccccccccCCCCCEEEEEECC-----CeEEEEeccCCcccceeeee---ecCCCCcEEEEEec
Confidence            11  1111222222             34567777764     34777877554  3433321   1111122233333 


Q ss_pred             -C---CEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          253 -D---ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       253 -~---~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                       +   +.+++.||.++     .+.+||+.+.
T Consensus       214 p~~~~~~~l~s~s~Dg-----~I~iwd~~~~  239 (753)
T 3jro_A          214 PTVLLRSYLASVSQDR-----TCIIWTQDNE  239 (753)
T ss_dssp             CCCSSSEEEEEEESSS-----CEEEEEESSS
T ss_pred             cCCCCCCEEEEEecCC-----EEEEecCCCC
Confidence             3   57888887554     3677887664

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.51  E-value=0.51  Score=43.67  Aligned_cols=246  Identities=11%  Similarity=0.076  Sum_probs=118.1

Q ss_pred             CCEEEEEcCCC--CCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-C-CEEEEEcccCCC
Q 010571           37 DQKLYIVGGSR--NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G-TKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~lyv~GG~~--~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~  112 (507)
                      ++.+|+.....  .+.....+++||+.++.+..+.....            ... ...-++++.. + ++||+....   
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~-~~~~~~i~~~~~~g~l~v~~~~---   91 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV------------NGY-GGIPAGCQCDRDANQLFVADMR---   91 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE------------TTE-ECCEEEEEECSSSSEEEEEETT---
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc------------CCC-CCCCceEEEecCCCcEEEEECC---
Confidence            56788871100  01123469999999988876543100            000 0111233332 4 788887641   


Q ss_pred             CCCcceEEEEECCCCcEEEe-ecCCCCCCCcccceEEEE--CCEEEEEcCcC---------CCCCccCcEEEEEcCCCcE
Q 010571          113 SSDSMIVRFIDLETNLCGVM-ETSGKVPVARGGHSVTLV--GSRLIIFGGED---------RSRKLLNDVHFLDLETMTW  180 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~-~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~---------~~~~~~~~~~~~d~~t~~W  180 (507)
                          +.+++||+. ++...+ ... ....+......+.+  ++.+|+....+         ........++.||+. ++.
T Consensus        92 ----~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           92 ----LGLLVVQTD-GTFEEIAKKD-SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             ----TEEEEEETT-SCEEECCSBC-TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred             ----CCEEEEeCC-CCEEEEEecc-CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence                258999998 777655 321 11111111222333  45787765432         111123569999987 666


Q ss_pred             EEeecCCCCCCCCCCceEEEE----cCc-EEEEEeCCCCCcCCCcEEEEECC-CCcEEeeeecCCCCCCC-cceEEEEE-
Q 010571          181 DAVEVTQTPPAPRYDHSAALH----ANR-YLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGR-AGHAGITI-  252 (507)
Q Consensus       181 ~~~~~~g~~p~~r~~~~~~~~----~~~-~l~i~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r-~~~~~~~~-  252 (507)
                      ..+......     ...++..    .++ .+|+.....     +.+++||+. ++.+.........+... .....+.+ 
T Consensus       165 ~~~~~~~~~-----~~~i~~~~~~d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d  234 (314)
T 1pjx_A          165 IQVDTAFQF-----PNGIAVRHMNDGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             EEEEEEESS-----EEEEEEEECTTSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             EEeccCCCC-----cceEEEecccCCCCCEEEEEECCC-----CeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence            554321111     1234444    455 466654322     568899875 44443221111122111 11222333 


Q ss_pred             -CCEEEEEeccCCCCCcceEEEEEcCcCee-EEeccCCCCCCCCCCCCceEEEEE-cCceEEEEEcccCCCcCCeEEEEE
Q 010571          253 -DENWYIVGGGDNNNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGKYNNEVFVMR  329 (507)
Q Consensus       253 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W-~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~v~~~~  329 (507)
                       ++++|+....+     +.+.+||+.+... ..+. .+.        .....+.+ +++..||+.+..    ...++.|+
T Consensus       235 ~~G~l~v~~~~~-----~~i~~~d~~~g~~~~~~~-~~~--------~~~~~i~~~~dg~~l~v~~~~----~~~l~~~~  296 (314)
T 1pjx_A          235 EDNNLLVANWGS-----SHIEVFGPDGGQPKMRIR-CPF--------EKPSNLHFKPQTKTIFVTEHE----NNAVWKFE  296 (314)
T ss_dssp             TTCCEEEEEETT-----TEEEEECTTCBSCSEEEE-CSS--------SCEEEEEECTTSSEEEEEETT----TTEEEEEE
T ss_pred             CCCCEEEEEcCC-----CEEEEEcCCCCcEeEEEe-CCC--------CCceeEEECCCCCEEEEEeCC----CCeEEEEe
Confidence             46787764321     2588899874432 2221 111        11222333 334457775542    25789999


Q ss_pred             CCCC
Q 010571          330 LKPR  333 (507)
Q Consensus       330 ~~~~  333 (507)
                      +...
T Consensus       297 ~~~~  300 (314)
T 1pjx_A          297 WQRN  300 (314)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.48  E-value=0.57  Score=48.16  Aligned_cols=131  Identities=13%  Similarity=0.113  Sum_probs=73.2

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEC-CCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEc
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-RSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~-~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~G  107 (507)
                      .+.++.++.||+....     ...++.||. .+++  |+.-......    ..    ..........+.+..+++||+..
T Consensus        56 ~~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~v~v~~  122 (571)
T 2ad6_A           56 GAPLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDAS----TK----AVMCCDVVDRGLAYGAGQIVKKQ  122 (571)
T ss_dssp             SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGG----GG----GGCTTCSCCCCCEEETTEEEEEC
T ss_pred             cccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCcc----cc----ccccccccccccEEECCEEEEEe
Confidence            4456679999998652     246999999 8874  8764332110    00    00000011224556789998874


Q ss_pred             ccCCCCCCcceEEEEECCCC--cEEEeecCCCCCCC-cccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEE
Q 010571          108 GHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDA  182 (507)
Q Consensus       108 G~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~-r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~  182 (507)
                      .       ...++.+|..|+  .|+....  ..+.. ....+.++.++.+|+-.+.... .....++.||+.|++  |+.
T Consensus       123 ~-------dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          123 A-------NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             T-------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEE
T ss_pred             C-------CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEE
Confidence            3       235999999887  4875431  11111 1122334568888765432111 113469999998765  876


Q ss_pred             ee
Q 010571          183 VE  184 (507)
Q Consensus       183 ~~  184 (507)
                      -.
T Consensus       193 ~~  194 (571)
T 2ad6_A          193 FA  194 (571)
T ss_dssp             ES
T ss_pred             cc
Confidence            53

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.46  E-value=0.18  Score=49.47  Aligned_cols=261  Identities=15%  Similarity=0.114  Sum_probs=120.6

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCcc-ccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcc
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSPR-YKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~   79 (507)
                      |+-++++|..++.-..+-.   ..... .=.+++.. ++.+++.|+.+     ..+.++|+.++.-......        
T Consensus       124 d~tV~lWd~~tg~~~~~~~---~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~~~~--------  187 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTS--------  187 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECC--------
T ss_pred             CCEEEEEECCCCCEEEEEE---ecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEEEeC--------
Confidence            4556788888877665531   21111 11222222 55667777643     4588999988764332211        


Q ss_pred             ccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEE
Q 010571           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIF  157 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~  157 (507)
                                ......+...++.+++.|+..      ..+..+|..+.........+.    .........  .+..++.
T Consensus       188 ----------h~~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h----~~~~~~~~~~~~g~~l~s  247 (420)
T 4gga_A          188 ----------HSARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRHLAS  247 (420)
T ss_dssp             ----------CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECC----SSCEEEEEECTTSSEEEE
T ss_pred             ----------CCCceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEeccc----ccceeeeeecCCCCeeee
Confidence                      122234455567777777653      247777776654332221111    111111222  3455555


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcE--EEeecCCCCCCCCCCceEEEE--cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTW--DAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~--~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      |+.+      +.+.++|..+..-  ..+......  ...-.+++..  ....+++.||..+    ..|.+||+.++.-..
T Consensus       248 ~~~D------~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          248 GGND------NLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLS  315 (420)
T ss_dssp             EETT------SCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTT----CEEEEEETTTTEEEE
T ss_pred             eecc------ccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCC----CEEEEEeCCccccce
Confidence            5543      3477777765431  111100000  0011111222  2343444455432    358889998876544


Q ss_pred             eeecCCCCCCCcceEEEEE-C-CEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEE
Q 010571          234 PEIKGDLVTGRAGHAGITI-D-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHL  311 (507)
Q Consensus       234 ~~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l  311 (507)
                      ....     .....+++.. + +.+++.+|....    .+.+||..+..  .+..+.+.      ......+.+..+..+
T Consensus       316 ~~~~-----~~~v~~~~~~~~~~~lv~~sg~~d~----~I~iwd~~~~~--~v~~l~gH------~~~V~~l~~spdg~~  378 (420)
T 4gga_A          316 AVDA-----HSQVCSILWSPHYKELISGHGFAQN----QLVIWKYPTMA--KVAELKGH------TSRVLSLTMSPDGAT  378 (420)
T ss_dssp             EEEC-----SSCEEEEEEETTTTEEEEEECTTTC----CEEEEETTTCC--EEEEECCC------SSCEEEEEECTTSSC
T ss_pred             eecc-----ccceeeeeecCCCCeEEEEEecCCC----EEEEEECCCCc--EEEEEcCC------CCCEEEEEEcCCCCE
Confidence            2211     1111122222 3 345554453322    47888887653  33333221      112333344444456


Q ss_pred             EEEcccCCCcCCeEEEEECC
Q 010571          312 VAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       312 ~v~GG~~~~~~~~v~~~~~~  331 (507)
                      ++.||.+    ..|.++|+.
T Consensus       379 l~S~s~D----~tvriWdv~  394 (420)
T 4gga_A          379 VASAAAD----ETLRLWRCF  394 (420)
T ss_dssp             EEEEETT----TEEEEECCS
T ss_pred             EEEEecC----CeEEEEECC
Confidence            6667755    345566653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=96.45  E-value=0.87  Score=48.11  Aligned_cols=252  Identities=10%  Similarity=0.015  Sum_probs=123.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCC--
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKK--  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~--  112 (507)
                      ++..++|+...++.....++++|+.++.........                 ..  ...+.+  +++.++++.....  
T Consensus       135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-----------------~~--~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-----------------VK--FSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-----------------EC--SCCEEECTTSSEEEEEECCCCSS
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-----------------cc--cceEEEEeCCCEEEEEEECCccc
Confidence            455555543322222347999999999876643211                 11  122222  4443344333221  


Q ss_pred             --------CCCcceEEEEECCCCcEE--EeecCCCCCCCcccceEEEE-CC-EEEEEcCcCCCCCccCcEEEEEcCC---
Q 010571          113 --------SSDSMIVRFIDLETNLCG--VMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLET---  177 (507)
Q Consensus       113 --------~~~~~~~~~~d~~t~~W~--~~~~~g~~p~~r~~~~~~~~-~~-~l~~~GG~~~~~~~~~~~~~~d~~t---  177 (507)
                              ......++.+++.+....  .+..  ....+........- ++ +|++.......  ..+.++.+|+.+   
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGCD--PVNRLWYCDLQQESN  271 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSSS--SCCEEEEEEGGGSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccCC--CccEEEEEECccccc
Confidence                    022446899999887632  2211  11112111222222 33 55554432211  256899999876   


Q ss_pred             ---C--cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC---cEEeeeecCCCCCCCcceEE
Q 010571          178 ---M--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAG  249 (507)
Q Consensus       178 ---~--~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~  249 (507)
                         .  .+..+...   . . .........++.||+.+..+  .....|+.+|+.+.   .|+.+..  ..+. ..-...
T Consensus       272 ~~~~~~~~~~l~~~---~-~-~~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~--~~~~-~~~~~~  341 (710)
T 2xdw_A          272 GITGILKWVKLIDN---F-E-GEYDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVP--EHEK-DVLEWV  341 (710)
T ss_dssp             SSCSSCCCEEEECS---S-S-SCEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEEC--CCSS-CEEEEE
T ss_pred             ccCCccceEEeeCC---C-C-cEEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccC--CCCC-CeEEEE
Confidence               4  57777531   1 1 11222333456677776542  22357999998875   4877632  1111 112233


Q ss_pred             EEE-CCEEEEEeccCCCCCcceEEEEEcCcCe-eEEeccCCCCCCCCCCCCceEEEEE-cCceEEEEEcccCCCcCCeEE
Q 010571          250 ITI-DENWYIVGGGDNNNGCQETIVLNMTKLA-WSILTSVKGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGKYNNEVF  326 (507)
Q Consensus       250 ~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~-W~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~v~  326 (507)
                      ... ++.+++....+   ....++++|+.++. ...+...        .+. ...+.. +++..|+ +...+......+|
T Consensus       342 ~~~~~~~lv~~~~~~---g~~~l~~~~~~~g~~~~~l~~~--------~~~-v~~~~~s~d~~~l~-~~~ss~~~P~~i~  408 (710)
T 2xdw_A          342 ACVRSNFLVLCYLHD---VKNTLQLHDLATGALLKIFPLE--------VGS-VVGYSGQKKDTEIF-YQFTSFLSPGIIY  408 (710)
T ss_dssp             EEETTTEEEEEEEET---TEEEEEEEETTTCCEEEEECCC--------SSE-EEEEECCTTCSEEE-EEEECSSCCCEEE
T ss_pred             EEEcCCEEEEEEEEC---CEEEEEEEECCCCCEEEecCCC--------Cce-EEEEecCCCCCEEE-EEEeCCCCCCEEE
Confidence            344 56676665432   24568899985543 4444321        122 222222 2233333 3333334567899


Q ss_pred             EEECCCCC
Q 010571          327 VMRLKPRD  334 (507)
Q Consensus       327 ~~~~~~~~  334 (507)
                      .||+.+..
T Consensus       409 ~~d~~tg~  416 (710)
T 2xdw_A          409 HCDLTKEE  416 (710)
T ss_dssp             EEETTSSS
T ss_pred             EEECCCCc
Confidence            99987655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=96.44  E-value=0.55  Score=43.24  Aligned_cols=242  Identities=10%  Similarity=-0.077  Sum_probs=121.2

Q ss_pred             cceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE-ECCEEEEE
Q 010571           30 KHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLIL  106 (507)
Q Consensus        30 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iyv~  106 (507)
                      ..+.+..  ++.||+.+..     ...+++||+.++ ...+....                  ..-++++. -+++||+.
T Consensus        30 ~eg~~~d~~g~~l~~~~~~-----~~~i~~~~~~~~-~~~~~~~~------------------~~~~~l~~~~dg~l~v~   85 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVR-----QNRTWAWSDDGQ-LSPEMHPS------------------HHQNGHCLNKQGHLIAC   85 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGG-----GTEEEEEETTSC-EEEEESSC------------------SSEEEEEECTTCCEEEE
T ss_pred             ccCCeEeCCCCEEEEEeCC-----CCEEEEEECCCC-eEEEECCC------------------CCcceeeECCCCcEEEE
Confidence            3444444  4458887653     346899999988 55443211                  11123332 25778776


Q ss_pred             cccCCCCCCcceEEEEECCCCcEEEeecCC-CCCCCcccceEEEECCEEEEE----cCcCC-------CCCccCcEEEEE
Q 010571          107 GGHYKKSSDSMIVRFIDLETNLCGVMETSG-KVPVARGGHSVTLVGSRLIIF----GGEDR-------SRKLLNDVHFLD  174 (507)
Q Consensus       107 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g-~~p~~r~~~~~~~~~~~l~~~----GG~~~-------~~~~~~~~~~~d  174 (507)
                      ...      ...+.+||+.+++...+.... ..+..+....++.-++.+|+.    |....       .......++.||
T Consensus        86 ~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A           86 SHG------LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             ETT------TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             ecC------CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence            431      235999999898887664210 111111111222225678875    43210       011134799999


Q ss_pred             cCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECC-CCcE-EeeeecCCCCCCCcceEEEE-
Q 010571          175 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEW-SQPEIKGDLVTGRAGHAGIT-  251 (507)
Q Consensus       175 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~-~~~W-~~~~~~~~~p~~r~~~~~~~-  251 (507)
                      +. ++...+..  ...   ...+++...++.+++.+...     +.+++|++. ++.. ...... ....... .+++. 
T Consensus       160 ~~-g~~~~~~~--~~~---~~~gi~~s~dg~~lv~~~~~-----~~i~~~~~~~~g~~~~~~~~~-~~~~~~p-~~i~~d  226 (296)
T 3e5z_A          160 PD-GTLSAPIR--DRV---KPNGLAFLPSGNLLVSDTGD-----NATHRYCLNARGETEYQGVHF-TVEPGKT-DGLRVD  226 (296)
T ss_dssp             TT-SCEEEEEC--CCS---SEEEEEECTTSCEEEEETTT-----TEEEEEEECSSSCEEEEEEEE-CCSSSCC-CSEEEB
T ss_pred             CC-CCEEEeec--CCC---CCccEEECCCCCEEEEeCCC-----CeEEEEEECCCCcCcCCCeEe-eCCCCCC-CeEEEC
Confidence            87 66555432  111   11234444455555444322     578999986 5555 221111 1111111 12222 


Q ss_pred             ECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          252 IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       252 ~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                      -++++|+..+       +.+.+||+.......+....        +...+.+.-++...|++...      ..+|.|++.
T Consensus       227 ~~G~l~v~~~-------~~v~~~~~~g~~~~~~~~~~--------~~~~~~f~~~d~~~L~v~t~------~~l~~~~~~  285 (296)
T 3e5z_A          227 AGGLIWASAG-------DGVHVLTPDGDELGRVLTPQ--------TTSNLCFGGPEGRTLYMTVS------TEFWSIETN  285 (296)
T ss_dssp             TTSCEEEEET-------TEEEEECTTSCEEEEEECSS--------CCCEEEEESTTSCEEEEEET------TEEEEEECS
T ss_pred             CCCCEEEEcC-------CeEEEECCCCCEEEEEECCC--------CceeEEEECCCCCEEEEEcC------CeEEEEEcc
Confidence            2567887751       25889998866555443221        11111111234456777542      369999987


Q ss_pred             CCCC
Q 010571          332 PRDI  335 (507)
Q Consensus       332 ~~~w  335 (507)
                      +..-
T Consensus       286 ~~~~  289 (296)
T 3e5z_A          286 VRGL  289 (296)
T ss_dssp             CCBC
T ss_pred             cccc
Confidence            6644

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=96.42  E-value=0.78  Score=44.77  Aligned_cols=223  Identities=13%  Similarity=0.114  Sum_probs=110.3

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  130 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~  130 (507)
                      +.|+++|..++....+-....                ......++.+  ++.+++.|+.+.      .+.++|+.+++-.
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~----------------~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~  182 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRL  182 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEEecC----------------CCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEE
Confidence            468999999987665543321                1222233333  566777776532      3889999887643


Q ss_pred             EeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          131 VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       131 ~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      ...   ...  .....+...++.+++.|+.+      ..+..+|..+.........+.   ......+....++..++.|
T Consensus       183 ~~~---~~h--~~~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~h---~~~~~~~~~~~~g~~l~s~  248 (420)
T 4gga_A          183 RNM---TSH--SARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGRHLASG  248 (420)
T ss_dssp             EEE---CCC--SSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEE
T ss_pred             EEE---eCC--CCceEEEeeCCCEEEEEeCC------CceeEeeecccceeeEEeccc---ccceeeeeecCCCCeeeee
Confidence            332   111  12223444566777777653      357777776544333222111   1111223333445466666


Q ss_pred             CCCCCcCCCcEEEEECCCCcEE--eeeecCCCCCCCcceEEEEE---CCEEEEEeccCCCCCcceEEEEEcCcCeeEEec
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~--~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~  285 (507)
                      +.+     +.+.+++..+..-.  .+..   .........+..+   +..+++.+|...+.   .+.++|+.+..-....
T Consensus       249 ~~D-----~~v~i~~~~~~~~~~~~~~~---~~~~~~~V~~~~~~p~~~~~la~~~gs~D~---~I~iwd~~t~~~~~~~  317 (420)
T 4gga_A          249 GND-----NLVNVWPSAPGEGGWVPLQT---FTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCSGACLSAV  317 (420)
T ss_dssp             ETT-----SCEEEEESSCCSSCSCCSEE---ECCCSSCEEEEEECTTCTTEEEEEECTTTC---EEEEEETTTTEEEEEE
T ss_pred             ecc-----ccceEEeeccccccceeeee---ecccCCceeeeeeCCCcccEEEEEeecCCC---EEEEEeCCccccceee
Confidence            654     45677776654311  1100   0011111122222   34566555433222   4778898877644322


Q ss_pred             cCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          286 SVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       286 ~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      ...        ......+..+....+++.+|..   ...+.++|+.+.
T Consensus       318 ~~~--------~~v~~~~~~~~~~~lv~~sg~~---d~~I~iwd~~~~  354 (420)
T 4gga_A          318 DAH--------SQVCSILWSPHYKELISGHGFA---QNQLVIWKYPTM  354 (420)
T ss_dssp             ECS--------SCEEEEEEETTTTEEEEEECTT---TCCEEEEETTTC
T ss_pred             ccc--------cceeeeeecCCCCeEEEEEecC---CCEEEEEECCCC
Confidence            211        1122233344555676666643   346788887543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.42  E-value=0.92  Score=47.62  Aligned_cols=132  Identities=16%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             cceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEc
Q 010571           30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        30 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~G  107 (507)
                      ..+-++.++.||+...      ...++.+|..|++  |+.-......     ..   ..........+.++.+++||+..
T Consensus        59 ~~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~v~v~~  124 (668)
T 1kv9_A           59 EATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKV-----KA---RTSCCDAVNRGVALWGDKVYVGT  124 (668)
T ss_dssp             CCCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGG-----GG---GGCTTCSCCCCCEEEBTEEEEEC
T ss_pred             ccCCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCcc-----cc---ccccccCCccceEEECCEEEEEc
Confidence            3445667999999865      3469999999874  8764332210     00   00000011233456788888764


Q ss_pred             ccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEe
Q 010571          108 GHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  183 (507)
Q Consensus       108 G~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~  183 (507)
                      .       ...++.+|..|++  |+..... .........+.++.++.+|+-.+... ......++.||+.|++  |+.-
T Consensus       125 ~-------dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          125 L-------DGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVVKGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             T-------TSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred             C-------CCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEECCEEEEeCCCCC-cCCCCEEEEEECCCCcEEEEec
Confidence            2       2359999998885  8765411 11111222234556888776432211 1124579999998875  8765


Q ss_pred             e
Q 010571          184 E  184 (507)
Q Consensus       184 ~  184 (507)
                      .
T Consensus       196 ~  196 (668)
T 1kv9_A          196 T  196 (668)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.39  E-value=0.65  Score=43.56  Aligned_cols=186  Identities=12%  Similarity=0.114  Sum_probs=95.2

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      ++.+++.|+.+      ..+.++|+.++.-......  .+..  ..+++.. ++..++.|+.+      ..+.+||+.+.
T Consensus        91 ~~~~l~s~s~D------~~i~lWd~~~~~~~~~~~~--~~~~--~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~  154 (321)
T 3ow8_A           91 TLPIAASSSLD------AHIRLWDLENGKQIKSIDA--GPVD--AWTLAFSPDSQYLATGTHV------GKVNIFGVESG  154 (321)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTTEEEEEEEC--CTTC--CCCEEECTTSSEEEEECTT------SEEEEEETTTC
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCCEEEEEeC--CCcc--EEEEEECCCCCEEEEEcCC------CcEEEEEcCCC
Confidence            34566666543      3488899988764433211  1111  1122222 45666666643      35888998876


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEE
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENW  256 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l  256 (507)
                      .-...-.    .......+++...++.+++.|+.+     ..+.+||+.++.-...- .+    ....-.++.+  ++.+
T Consensus       155 ~~~~~~~----~~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~~~~~~-~~----h~~~v~~l~~spd~~~  220 (321)
T 3ow8_A          155 KKEYSLD----TRGKFILSIAYSPDGKYLASGAID-----GIINIFDIATGKLLHTL-EG----HAMPIRSLTFSPDSQL  220 (321)
T ss_dssp             SEEEEEE----CSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE-CC----CSSCCCEEEECTTSCE
T ss_pred             ceeEEec----CCCceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEE-cc----cCCceeEEEEcCCCCE
Confidence            5433221    111122234444566677777765     45889999887643321 11    1111122333  5677


Q ss_pred             EEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          257 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      ++.|+.++     .+.+||+.+......  +.+.      ......+.+..+..+++.|+.+    ..+.++|+.+
T Consensus       221 l~s~s~dg-----~i~iwd~~~~~~~~~--~~~h------~~~v~~~~~sp~~~~l~s~s~D----~~v~iwd~~~  279 (321)
T 3ow8_A          221 LVTASDDG-----YIKIYDVQHANLAGT--LSGH------ASWVLNVAFCPDDTHFVSSSSD----KSVKVWDVGT  279 (321)
T ss_dssp             EEEECTTS-----CEEEEETTTCCEEEE--ECCC------SSCEEEEEECTTSSEEEEEETT----SCEEEEETTT
T ss_pred             EEEEcCCC-----eEEEEECCCcceeEE--EcCC------CCceEEEEECCCCCEEEEEeCC----CcEEEEeCCC
Confidence            77777543     378889876654321  2111      1122333444333456667754    3577777654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=96.37  E-value=0.12  Score=48.03  Aligned_cols=229  Identities=8%  Similarity=0.048  Sum_probs=109.9

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEE-C-CEEEEEcCCCCCccCCceEEEECCCCceeEe-eeccccccCcc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-D-QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNL-RLETELDADKT   79 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~-~~~~~~~~~~~   79 (507)
                      ...++||+.++.+..+...........-++++.. + +.||+...      .+.+++||+. ++...+ .....      
T Consensus        46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~------~~~l~~~d~~-g~~~~~~~~~~~------  112 (314)
T 1pjx_A           46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM------RLGLLVVQTD-GTFEEIAKKDSE------  112 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET------TTEEEEEETT-SCEEECCSBCTT------
T ss_pred             CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC------CCCEEEEeCC-CCEEEEEeccCC------
Confidence            3477889888888766520000011122333333 4 67888754      1368999998 776554 32110      


Q ss_pred             ccCCccCCCCCccceeeEE-ECCEEEEEcccC---------CCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE
Q 010571           80 EDSGLLEVLPPMSDHCMVK-WGTKLLILGGHY---------KKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL  149 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~---------~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~  149 (507)
                            ..+ ...-+.++. -+++||+.....         ........++.||+. ++...+..  ....+   ..++.
T Consensus       113 ------~~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~~i~~  179 (314)
T 1pjx_A          113 ------GRR-MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFP---NGIAV  179 (314)
T ss_dssp             ------SCB-CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSE---EEEEE
T ss_pred             ------Ccc-ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCCc---ceEEE
Confidence                  001 111122222 267788765432         111123569999987 66655431  11111   22333


Q ss_pred             E----C-C-EEEEEcCcCCCCCccCcEEEEEcC-CCcEEEeecCCCCCCC--CCCceEEEEcCcEEEEEeCCCCCcCCCc
Q 010571          150 V----G-S-RLIIFGGEDRSRKLLNDVHFLDLE-TMTWDAVEVTQTPPAP--RYDHSAALHANRYLIVFGGCSHSIFFND  220 (507)
Q Consensus       150 ~----~-~-~l~~~GG~~~~~~~~~~~~~~d~~-t~~W~~~~~~g~~p~~--r~~~~~~~~~~~~l~i~GG~~~~~~~~~  220 (507)
                      .    . + .+|+....      .+.+++||+. +++..........+..  ..-..++...++.+|+.....     +.
T Consensus       180 ~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~-----~~  248 (314)
T 1pjx_A          180 RHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS-----SH  248 (314)
T ss_dssp             EECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT-----TE
T ss_pred             ecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC-----CE
Confidence            3    2 3 46665432      3468899876 4444322111111111  111234444566688764321     46


Q ss_pred             EEEEECCCCcEE-eeeecCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCcceEEEEEcCcC
Q 010571          221 LHVLDLQTNEWS-QPEIKGDLVTGRAGHAGITI--DEN-WYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       221 i~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      +.+||+.++... .+.    .+.  ....++.+  +++ ||+....+     +.+++|++...
T Consensus       249 i~~~d~~~g~~~~~~~----~~~--~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~~~~  300 (314)
T 1pjx_A          249 IEVFGPDGGQPKMRIR----CPF--EKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEWQRN  300 (314)
T ss_dssp             EEEECTTCBSCSEEEE----CSS--SCEEEEEECTTSSEEEEEETTT-----TEEEEEECSSC
T ss_pred             EEEEcCCCCcEeEEEe----CCC--CCceeEEECCCCCEEEEEeCCC-----CeEEEEeCCCC
Confidence            899998754422 221    121  12233333  344 66654322     36888887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.35  E-value=0.089  Score=50.18  Aligned_cols=185  Identities=9%  Similarity=0.050  Sum_probs=95.1

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++.+++.||.+.      .+.++|..++.|......  .........++.+  ++..++.|+.+.      .+.++|..+
T Consensus        27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVL--SEGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS------CEEEEEEETTEEEEEEEE--CSSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECC
T ss_pred             CCCEEEEEcCCC------eEEEEEcCCCcceeeeee--ccccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccC
Confidence            667777777543      377888888877643311  0111111222333  456677777543      477788877


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc-EEeeeecCCCCCCCcceEEEEE--CC
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITI--DE  254 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~--~~  254 (507)
                      ..+..+.....  ....-.+++...++.+++.|+.+     ..+.++|+.+.. +..+....   ........+.+  ++
T Consensus        93 ~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~  162 (345)
T 3fm0_A           93 DDFECVTTLEG--HENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEEDEYECVSVLN---SHTQDVKHVVWHPSQ  162 (345)
T ss_dssp             C-EEEEEEECC--CSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTTSCEEEEEEEC---CCCSCEEEEEECSSS
T ss_pred             CCeEEEEEccC--CCCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCCCCeEEEEEec---CcCCCeEEEEECCCC
Confidence            76654432111  11111233334556577777765     357888876542 33322111   11111223333  45


Q ss_pred             EEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC
Q 010571          255 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  319 (507)
Q Consensus       255 ~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~  319 (507)
                      .+++.|+.++     .+.+||..+..|..+..+.+.      ......+.+..+..+++.|+.++
T Consensus       163 ~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~h------~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          163 ELLASASYDD-----TVKLYREEEDDWVCCATLEGH------ESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             SCEEEEETTS-----CEEEEEEETTEEEEEEEECCC------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             CEEEEEeCCC-----cEEEEEecCCCEEEEEEecCC------CCceEEEEECCCCCEEEEEeCCC
Confidence            6777777543     377888888888765444322      12233344444445666677553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.33  E-value=0.6  Score=43.57  Aligned_cols=236  Identities=11%  Similarity=0.067  Sum_probs=107.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.+++.|+.+     ..+..++..............                ...........+..++.|+.+.     
T Consensus        97 dg~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~s~s~d~-----  150 (340)
T 4aow_A           97 DGQFALSGSWD-----GTLRLWDLTTGTTTRRFVGHT----------------KDVLSVAFSSDNRQIVSGSRDK-----  150 (340)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS----------------SCEEEEEECTTSSCEEEEETTS-----
T ss_pred             CCCEEEEEccc-----ccceEEeecccceeeeecCCC----------------CceeEEEEeecCccceeecCCC-----
Confidence            45556666633     346777777765544433221                1111111122445556665432     


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE----CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                       .+.++|.....-.....    .........+.+    .+.+++.||.+      ..+.++|+.+.+...... +   ..
T Consensus       151 -~~~~~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~s~~~d------~~i~i~d~~~~~~~~~~~-~---h~  215 (340)
T 4aow_A          151 -TIKLWNTLGVCKYTVQD----ESHSEWVSCVRFSPNSSNPIIVSCGWD------KLVKVWNLANCKLKTNHI-G---HT  215 (340)
T ss_dssp             -CEEEECTTSCEEEEECS----SSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTTEEEEEEC-C---CS
T ss_pred             -eEEEEEeCCCceEEEEe----ccccCcccceEEccCCCCcEEEEEcCC------CEEEEEECCCCceeeEec-C---CC
Confidence             36677776554333221    111111222222    12455556543      258889988776544321 1   11


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEE
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~  272 (507)
                      ..-.+++...++.+++.|+.+     ..+.+||+.+..-..... .    ...-.+++...+..++.++.++     .+.
T Consensus       216 ~~v~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~~~~~~-~----~~~v~~~~~~~~~~~~~~~~d~-----~i~  280 (340)
T 4aow_A          216 GYLNTVTVSPDGSLCASGGKD-----GQAMLWDLNEGKHLYTLD-G----GDIINALCFSPNRYWLCAATGP-----SIK  280 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEEEEEEE-C----SSCEEEEEECSSSSEEEEEETT-----EEE
T ss_pred             CcEEEEEECCCCCEEEEEeCC-----CeEEEEEeccCceeeeec-C----CceEEeeecCCCCceeeccCCC-----EEE
Confidence            111233344556677777765     358888987765433211 1    1111122222344455555332     477


Q ss_pred             EEEcCcCeeEE-eccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          273 VLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       273 ~~d~~~~~W~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      +||+.+..-.. +..................+.+..+..+++.||.++    .|.++|+.+
T Consensus       281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg----~v~iW~~~t  337 (340)
T 4aow_A          281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN----LVRVWQVTI  337 (340)
T ss_dssp             EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS----CEEEEEEEC
T ss_pred             EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC----EEEEEeCCC
Confidence            88887664322 111110001111112233334444444566677653    466666644

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.58  Score=44.15  Aligned_cols=197  Identities=12%  Similarity=0.098  Sum_probs=94.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||..++.-...-..                  .......+.+  ++..++.|+.+    
T Consensus        43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~l~s~~~d----   95 (369)
T 3zwl_B           43 EGDLLFSCSKD-----SSASVWYSLNGERLGTLDG------------------HTGTIWSIDVDCFTKYCVTGSAD----   95 (369)
T ss_dssp             TSCEEEEEESS-----SCEEEEETTTCCEEEEECC------------------CSSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEEeCC-----CEEEEEeCCCchhhhhhhh------------------cCCcEEEEEEcCCCCEEEEEeCC----
Confidence            45566666633     4688999887654332211                  1112222233  45666666642    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCc----EEEeecCC--
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT----WDAVEVTQ--  187 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~----W~~~~~~g--  187 (507)
                        ..+.+||+.++.......   .+.+  -.++... ++..++.++.+.. .....+..||+.+..    +.......  
T Consensus        96 --g~i~iwd~~~~~~~~~~~---~~~~--v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~  167 (369)
T 3zwl_B           96 --YSIKLWDVSNGQCVATWK---SPVP--VKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIH  167 (369)
T ss_dssp             --TEEEEEETTTCCEEEEEE---CSSC--EEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred             --CeEEEEECCCCcEEEEee---cCCC--eEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccceeecccccceee
Confidence              358899998886554431   1111  1122222 3445555543311 113467778775432    22211000  


Q ss_pred             --CCCCCC-CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC-CcEEeeeecCCCCCCCcceEEEEE--CCEEEEEec
Q 010571          188 --TPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGG  261 (507)
Q Consensus       188 --~~p~~r-~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG  261 (507)
                        ...... ...+++...++.+++.|+.+     ..+.+||+.+ ..-...-. +    .......+.+  ++.+++.|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSID-L----HEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             EEECCTTCCCEEEEEECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEE-C----CSSCEEEEEECTTSSEEEEEE
T ss_pred             eccCCcCccceeEEEEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEe-c----CCCceeEEEECCCCCEEEEec
Confidence              000000 12223333455566666654     4689999987 33222111 1    1111223333  556677766


Q ss_pred             cCCCCCcceEEEEEcCcCeeEE
Q 010571          262 GDNNNGCQETIVLNMTKLAWSI  283 (507)
Q Consensus       262 ~~~~~~~~d~~~~d~~~~~W~~  283 (507)
                      .++     .+.+||+.+..-..
T Consensus       238 ~d~-----~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          238 RDT-----NSFLVDVSTLQVLK  254 (369)
T ss_dssp             TTS-----EEEEEETTTCCEEE
T ss_pred             CCc-----eEEEEECCCCceee
Confidence            432     58889988765443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.27  E-value=0.14  Score=49.12  Aligned_cols=151  Identities=11%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.|..+.....                .......+.+  ++.+++.|+.+.   
T Consensus        22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~s~~~~~l~s~s~d~---   77 (377)
T 3dwl_C           22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSD----------------HDKIVTCVDWAPKSNRIVTCSQDR---   77 (377)
T ss_dssp             SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCC----------------CSSCEEEEEECTTTCCEEEEETTS---
T ss_pred             CCCEEEEecCC-----CEEEEEEccCCceEEEEEEec----------------CCceEEEEEEeCCCCEEEEEeCCC---
Confidence            45566666643     457789998887766654431                1112223333  456677776432   


Q ss_pred             CcceEEEEECCCCc-EEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCc-EEEeecCCCCC
Q 010571          115 DSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPP  190 (507)
Q Consensus       115 ~~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p  190 (507)
                         .+.+||+.++. |.....   .........++.+  ++.+++.|+.+      ..+.+||+.+.+ |...... ..+
T Consensus        78 ---~v~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~-~~~  144 (377)
T 3dwl_C           78 ---NAYVYEKRPDGTWKQTLV---LLRLNRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHL-KRP  144 (377)
T ss_dssp             ---SEEEC------CCCCEEE---CCCCSSCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEE-CSS
T ss_pred             ---eEEEEEcCCCCceeeeeE---ecccCCceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEe-ecc
Confidence               38888888776 443331   1111112222222  45666666653      248888887654 2222111 111


Q ss_pred             CCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       191 ~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ....-.+++...++.+++.|+.+     ..+.+||+.+.
T Consensus       145 h~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~  178 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVLLAAGCAD-----RKAYVLSAYVR  178 (377)
T ss_dssp             CCSCEEEEEECTTSSEEEEEESS-----SCEEEEEECCS
T ss_pred             cCCCeEEEEEcCCCCEEEEEeCC-----CEEEEEEEEec
Confidence            12222233444555577777764     35788887543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.25  E-value=0.81  Score=43.20  Aligned_cols=166  Identities=14%  Similarity=0.108  Sum_probs=84.0

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      .+.+||+.++.-...-     ........++.+  ++.+++.|+.+      ..+.++|+.+..-...-. +   ....-
T Consensus       165 ~i~~wd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~~~~~~-~---h~~~v  229 (340)
T 1got_B          165 TCALWDIETGQQTTTF-----TGHTGDVMSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQTFT-G---HESDI  229 (340)
T ss_dssp             CEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCSEEEEEC-C---CSSCE
T ss_pred             cEEEEECCCCcEEEEE-----cCCCCceEEEEECCCCCEEEEEeCC------CcEEEEECCCCeeEEEEc-C---CcCCE
Confidence            4889999887644322     111111122222  45677777754      358889988765433221 1   11112


Q ss_pred             ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEE
Q 010571          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIV  273 (507)
Q Consensus       196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~  273 (507)
                      .+++...++.+++.|+.+     ..+.+||+.+..-....  . .+.......++.+  ++.+++.|+.++     .+.+
T Consensus       230 ~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~--~-~~~~~~~v~~~~~s~~g~~l~~g~~d~-----~i~v  296 (340)
T 1got_B          230 NAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTY--S-HDNIICGITSVSFSKSGRLLLAGYDDF-----NCNV  296 (340)
T ss_dssp             EEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE--C-CTTCCSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred             EEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEE--c-cCCcccceEEEEECCCCCEEEEECCCC-----eEEE
Confidence            233444566677777765     35888998876533211  1 1111122233334  456777776443     4788


Q ss_pred             EEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC
Q 010571          274 LNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  319 (507)
Q Consensus       274 ~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~  319 (507)
                      ||..+..-  +..+.+.      ......+.+..+..+++.||.++
T Consensus       297 wd~~~~~~--~~~~~~h------~~~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          297 WDALKADR--AGVLAGH------DNRVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EETTTCCE--EEEEECC------SSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEcccCcE--eeEeecC------CCcEEEEEEcCCCCEEEEEcCCc
Confidence            88766532  2222111      11233334444445666777654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.24  E-value=0.39  Score=51.43  Aligned_cols=187  Identities=13%  Similarity=0.036  Sum_probs=93.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++..++.|+.     ...+.+||..++.....-...                  ......+.+  ++..++.|+.+    
T Consensus        66 ~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~~~~~d----  118 (814)
T 3mkq_A           66 RKNWIIVGSD-----DFRIRVFNYNTGEKVVDFEAH------------------PDYIRSIAVHPTKPYVLSGSDD----  118 (814)
T ss_dssp             GGTEEEEEET-----TSEEEEEETTTCCEEEEEECC------------------SSCEEEEEECSSSSEEEEEETT----
T ss_pred             CCCEEEEEeC-----CCeEEEEECCCCcEEEEEecC------------------CCCEEEEEEeCCCCEEEEEcCC----
Confidence            4556666663     246889999887654432211                  111222222  45455555532    


Q ss_pred             CcceEEEEECCCC-cEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 010571          115 DSMIVRFIDLETN-LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~~d~~t~-~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~  191 (507)
                        ..+.+||..++ .......  .  ....-.+++..  ++.+++.|+.+      ..+.+||+.+..-......   ..
T Consensus       119 --g~i~vw~~~~~~~~~~~~~--~--~~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~---~~  183 (814)
T 3mkq_A          119 --LTVKLWNWENNWALEQTFE--G--HEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTT---GQ  183 (814)
T ss_dssp             --SEEEEEEGGGTSEEEEEEE--C--CSSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEEC---CC
T ss_pred             --CEEEEEECCCCceEEEEEc--C--CCCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEec---CC
Confidence              34888888776 3222211  1  11111223333  34677777653      3588999866543222211   11


Q ss_pred             CCCCceEEEEc--CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCC
Q 010571          192 PRYDHSAALHA--NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNG  267 (507)
Q Consensus       192 ~r~~~~~~~~~--~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~  267 (507)
                      ......++...  ++.+++.|+.+     ..+.+||+.+..-...-. +    ......++.+  ++.+++.|+.++   
T Consensus       184 ~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~l~~~~~dg---  250 (814)
T 3mkq_A          184 ERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATLE-G----HMSNVSFAVFHPTLPIIISGSEDG---  250 (814)
T ss_dssp             TTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEEEE-C----CSSCEEEEEECSSSSEEEEEETTS---
T ss_pred             CCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEEEc-C----CCCCEEEEEEcCCCCEEEEEeCCC---
Confidence            12222333333  55577777754     368899988765433111 1    1111223333  456777777543   


Q ss_pred             cceEEEEEcCcCe
Q 010571          268 CQETIVLNMTKLA  280 (507)
Q Consensus       268 ~~d~~~~d~~~~~  280 (507)
                        .+.+||+.+..
T Consensus       251 --~v~vwd~~~~~  261 (814)
T 3mkq_A          251 --TLKIWNSSTYK  261 (814)
T ss_dssp             --CEEEEETTTCS
T ss_pred             --eEEEEECCCCc
Confidence              37788877654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=96.16  E-value=1  Score=43.56  Aligned_cols=105  Identities=13%  Similarity=0.051  Sum_probs=54.9

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcE-EEEEeCCCCCcCCCcEEEEECCCC
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ++.+++.|+.+      ..+.+||+.+..-......   .....-.+++...++. +++.|+.+     ..+.+||+.+.
T Consensus       258 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~  323 (420)
T 3vl1_A          258 YGKYVIAGHVS------GVITVHNVFSKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSP  323 (420)
T ss_dssp             TTEEEEEEETT------SCEEEEETTTCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCT
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCC
Confidence            45666776653      3599999987764333211   1111122333334444 66677654     46889998775


Q ss_pred             cE--EeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCc
Q 010571          230 EW--SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       230 ~W--~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  278 (507)
                      .-  ..+..  .  ....-.+++..++.+++.|+.++     .+.++|+.+
T Consensus       324 ~~~~~~~~~--~--~~~~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~~  365 (420)
T 3vl1_A          324 ECPVGEFLI--N--EGTPINNVYFAAGALFVSSGFDT-----SIKLDIISD  365 (420)
T ss_dssp             TSCSEEEEE--S--TTSCEEEEEEETTEEEEEETTTE-----EEEEEEECC
T ss_pred             cCchhhhhc--c--CCCCceEEEeCCCCEEEEecCCc-----cEEEEeccC
Confidence            32  22211  0  11111233344677888877443     366777554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.15  E-value=0.54  Score=44.77  Aligned_cols=184  Identities=14%  Similarity=0.100  Sum_probs=90.1

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~  176 (507)
                      +++.++.|+.+.      .+.++|+.+++-...-     ......-.++.+   +..+++.|+.+      +.+.++|+.
T Consensus       138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-----~~h~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~  200 (344)
T 4gqb_B          138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-----RAHAAQVTCVAASPHKDSVFLSCSED------NRILLWDTR  200 (344)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE-----CCCSSCEEEEEECSSCTTEEEEEETT------SCEEEEETT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEE-----cCcCCceEEEEecCCCCCceeeeccc------ccccccccc
Confidence            566777776533      3889999887543322     111111122223   23577777754      258899998


Q ss_pred             CCcEEEeecCCCCCCCCCCceEEE-Ec-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--
Q 010571          177 TMTWDAVEVTQTPPAPRYDHSAAL-HA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--  252 (507)
Q Consensus       177 t~~W~~~~~~g~~p~~r~~~~~~~-~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--  252 (507)
                      +.+-...-.   ..........+. .. ++.+++.|+.+     ..|.+||+.+..-...     +......-.++.+  
T Consensus       201 ~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~d-----g~v~~wd~~~~~~~~~-----~~~h~~~v~~v~fsp  267 (344)
T 4gqb_B          201 CPKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDEN-----GTVSLVDTKSTSCVLS-----SAVHSQCVTGLVFSP  267 (344)
T ss_dssp             SSSCEEECC-------CCCEEEEEECSSCTTEEEEEETT-----SEEEEEESCC--CCEE-----EECCSSCEEEEEECS
T ss_pred             ccceeeeee---cceeeccceeeeecCCCCcceEEeccC-----CcEEEEECCCCcEEEE-----EcCCCCCEEEEEEcc
Confidence            776433221   111111112222 22 44577777754     3588889876532110     1111111223333  


Q ss_pred             CC-EEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEE-cCceEEEEEcccCCCcCCeEEEEEC
Q 010571          253 DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       253 ~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~v~~~~~  330 (507)
                      ++ .+++.|+.++     .+.++|..+..-..+.   +      +......+.+ +.+..|++.||.++    .|..+++
T Consensus       268 ~g~~~lasgs~D~-----~i~vwd~~~~~~~~~~---~------H~~~V~~v~~sp~~~~llas~s~D~----~v~~w~v  329 (344)
T 4gqb_B          268 HSVPFLASLSEDC-----SLAVLDSSLSELFRSQ---A------HRDFVRDATWSPLNHSLLTTVGWDH----QVVHHVV  329 (344)
T ss_dssp             SSSCCEEEEETTS-----CEEEECTTCCEEEEEC---C------CSSCEEEEEECSSSTTEEEEEETTS----CEEEEEC
T ss_pred             CCCeEEEEEeCCC-----eEEEEECCCCcEEEEc---C------CCCCEEEEEEeCCCCeEEEEEcCCC----eEEEEEC
Confidence            23 4666666443     3778888877533321   1      1112333333 34456777788664    4555555


Q ss_pred             C
Q 010571          331 K  331 (507)
Q Consensus       331 ~  331 (507)
                      .
T Consensus       330 ~  330 (344)
T 4gqb_B          330 P  330 (344)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=96.12  E-value=0.71  Score=45.02  Aligned_cols=148  Identities=11%  Similarity=0.091  Sum_probs=77.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      .+.+++.|+.+     ..+.+||..++.....-..                  .......+.+  ++.+++.||.+..  
T Consensus       119 ~~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~------------------h~~~V~~v~~~~~~~~l~sgs~D~~--  173 (410)
T 1vyh_C          119 VFSVMVSASED-----ATIKVWDYETGDFERTLKG------------------HTDSVQDISFDHSGKLLASCSADMT--  173 (410)
T ss_dssp             SSSEEEEEESS-----SCEEEEETTTCCCCEEECC------------------CSSCEEEEEECTTSSEEEEEETTSC--
T ss_pred             CCCEEEEEeCC-----CeEEEEECCCCcEEEEEec------------------cCCcEEEEEEcCCCCEEEEEeCCCe--
Confidence            34566666643     4588999988764332111                  1111222223  5667777775432  


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                          +.+||+.+..-.  .   .+........++.+  ++..++.|+.+      ..+.++|+.++.-...-. +.   .
T Consensus       174 ----i~iwd~~~~~~~--~---~~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~-~h---~  234 (410)
T 1vyh_C          174 ----IKLWDFQGFECI--R---TMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFT-GH---R  234 (410)
T ss_dssp             ----CCEEETTSSCEE--E---CCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEE-CC---S
T ss_pred             ----EEEEeCCCCcee--E---EEcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEe-CC---C
Confidence                567787765432  2   11111112223333  44566667653      358899998876433221 11   1


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ..-..+....++.+++.|+.+     ..+.+||+.+.....
T Consensus       235 ~~v~~~~~~~~g~~l~s~s~D-----~~v~vwd~~~~~~~~  270 (410)
T 1vyh_C          235 EWVRMVRPNQDGTLIASCSND-----QTVRVWVVATKECKA  270 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCceee
Confidence            111122333455577777765     457888887765443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.07  E-value=0.89  Score=42.36  Aligned_cols=184  Identities=13%  Similarity=0.066  Sum_probs=81.5

Q ss_pred             eEEEEECC--CCcEEEeecCCCCCCCcccceEEEE-CC-EEEEEcCcCCCCCccCcEEEEEcCCCc-EEEeecCCCCCCC
Q 010571          118 IVRFIDLE--TNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPPAP  192 (507)
Q Consensus       118 ~~~~~d~~--t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~  192 (507)
                      .+.+|++.  ++++..+..   .+....-..++.. ++ .+|+.+..      .+.+.+||+..+. ...+.....   .
T Consensus        61 ~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~---~  128 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAE---SALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVVEG---L  128 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEE---EECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEECC---C
T ss_pred             eEEEEEecCCCCceeeccc---cccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccccC---C
Confidence            46666655  778776542   1111111222222 33 56655432      2358888874222 222221111   1


Q ss_pred             CCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCC-CcEEeee--ecCCCCCCCcceEEEEE--CC-EEEEEeccCCC
Q 010571          193 RYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPE--IKGDLVTGRAGHAGITI--DE-NWYIVGGGDNN  265 (507)
Q Consensus       193 r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~-~~W~~~~--~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~  265 (507)
                      ...+.++...++ .+|+.+..+     +.+.+||+.+ +....+.  .. ..+.. .....+.+  ++ .+|+.+..+  
T Consensus       129 ~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~pdg~~l~~~~~~~--  199 (343)
T 1ri6_A          129 DGCHSANISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEV-TTVEG-AGPRHMVFHPNEQYAYCVNELN--  199 (343)
T ss_dssp             TTBCCCEECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEE-ECSTT-CCEEEEEECTTSSEEEEEETTT--
T ss_pred             CCceEEEECCCCCEEEEecCCC-----CEEEEEEecCCCceeeeccccc-ccCCC-CCcceEEECCCCCEEEEEeCCC--
Confidence            122334444444 566654222     4689999887 6665432  10 11111 11122333  34 466655322  


Q ss_pred             CCcceEEEEEcC--cCeeEEe---ccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          266 NGCQETIVLNMT--KLAWSIL---TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       266 ~~~~d~~~~d~~--~~~W~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                         ..+.+|++.  +..+..+   ..++...  ............+++..|++.+..    ...+.+|++.
T Consensus       200 ---~~i~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~i~~s~dg~~l~v~~~~----~~~i~v~d~~  261 (343)
T 1ri6_A          200 ---SSVDVWELKDPHGNIECVQTLDMMPENF--SDTRWAADIHITPDGRHLYACDRT----ASLITVFSVS  261 (343)
T ss_dssp             ---TEEEEEESSCTTSCCEEEEEEECSCTTC--CSCCCEEEEEECTTSSEEEEEETT----TTEEEEEEEC
T ss_pred             ---CEEEEEEecCCCCcEEEEeeccccCccc--cccCCccceEECCCCCEEEEEecC----CCEEEEEEEc
Confidence               257788874  3444332   2222110  001111223333444567765532    3467777775

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.06  E-value=1.1  Score=42.75  Aligned_cols=166  Identities=11%  Similarity=0.037  Sum_probs=84.0

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEE----CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                      .+.++|+.++.....-. +  ..  ....++.+    ++.+++.|+.+      ..+..+|+.+.+....-. +   ...
T Consensus       177 ~v~lwd~~~~~~~~~~~-~--h~--~~v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~~~~~~~-~---h~~  241 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFH-G--HG--ADVLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQCVQAFE-T---HES  241 (354)
T ss_dssp             EEEEEETTTCCEEEEEE-C--CS--SCEEEEEECCCSSCCEEEEEETT------SCEEEEETTTCCEEEEEC-C---CSS
T ss_pred             cEEEEeCCCCeEEEEEc-C--CC--CCeEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCcEEEEec-C---CCC
Confidence            58889998876543221 1  11  11112222    24677777754      358999998877644321 1   111


Q ss_pred             CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceE
Q 010571          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       194 ~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~  271 (507)
                      .-.+++...++.+++.|+.+     ..+.+||+.+..-.....   .........++.+  ++.+++.|+.++     .+
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d~-----~i  308 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIYS---KESIIFGASSVDFSLSGRLLFAGYNDY-----TI  308 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETTS-----CE
T ss_pred             CeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEc---CCCcccceeEEEEeCCCCEEEEEECCC-----cE
Confidence            11223333455577777765     358889988764333211   1111222333444  466777776443     47


Q ss_pred             EEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC
Q 010571          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG  319 (507)
Q Consensus       272 ~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~  319 (507)
                      .+||+.+..-  +..+.+      +......+.+..+..+++.|+.++
T Consensus       309 ~vwd~~~~~~--~~~l~~------h~~~v~~l~~spdg~~l~sgs~D~  348 (354)
T 2pbi_B          309 NVWDVLKGSR--VSILFG------HENRVSTLRVSPDGTAFCSGSWDH  348 (354)
T ss_dssp             EEEETTTCSE--EEEECC------CSSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEECCCCce--EEEEEC------CCCcEEEEEECCCCCEEEEEcCCC
Confidence            8888866532  222211      112233334444445666677653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=96.03  E-value=0.82  Score=48.09  Aligned_cols=156  Identities=8%  Similarity=0.013  Sum_probs=78.1

Q ss_pred             cCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC-cEEeeeecCCC-CCCC
Q 010571          167 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQPEIKGDL-VTGR  244 (507)
Q Consensus       167 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~-~W~~~~~~~~~-p~~r  244 (507)
                      ...++++|+.+++-..+...  .........++...++..++++..+.......++++|+.++ ....+...... ....
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             eeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            35699999988876554321  11111112233345555555554443333457999999988 66654321110 0000


Q ss_pred             cceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcC
Q 010571          245 AGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYN  322 (507)
Q Consensus       245 ~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~  322 (507)
                      .......-  ++++++.+..+   ....+|.++........+..-.       ..........+++..|++.+..++...
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~---g~~~l~~~~~~~~~~~~l~~~~-------~~v~~~~~~spdg~~l~~~~~~~~~~~  381 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRD---GWNHLYLYDTTGRLIRQVTKGE-------WEVTNFAGFDPKGTRLYFESTEASPLE  381 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTT---SSCEEEEEETTSCEEEECCCSS-------SCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred             cCCceeecCCCCEEEEEEccC---CccEEEEEECCCCEEEecCCCC-------eEEEeeeEEcCCCCEEEEEecCCCCce
Confidence            11112223  56665555432   2457888887777666653211       011111223344456666555443334


Q ss_pred             CeEEEEECCCCC
Q 010571          323 NEVFVMRLKPRD  334 (507)
Q Consensus       323 ~~v~~~~~~~~~  334 (507)
                      ..+|.+|+.+..
T Consensus       382 ~~l~~~d~~~~~  393 (706)
T 2z3z_A          382 RHFYCIDIKGGK  393 (706)
T ss_dssp             BEEEEEETTCCC
T ss_pred             EEEEEEEcCCCC
Confidence            578888876543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.98  E-value=0.039  Score=60.87  Aligned_cols=17  Identities=12%  Similarity=0.429  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 010571          466 TIENEVQILRQQKSAFE  482 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~  482 (507)
                      .|++|.+.|++|+..++
T Consensus      1027 ~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1027 ELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45555556665555554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.97  E-value=0.51  Score=45.06  Aligned_cols=137  Identities=11%  Similarity=0.082  Sum_probs=61.1

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccc-cceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCc-eeEeeeccccccCcc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRY-KHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLA-WSNLRLETELDADKT   79 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~-W~~~~~~~~~~~~~~   79 (507)
                      ....+||+....|..+..   +..... -.+++.. ++.+++.|+.+     ..+.+||+.++. |........      
T Consensus        33 ~~i~iw~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~~~~------   98 (377)
T 3dwl_C           33 NQVELYEQDGNGWKHART---FSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKRPDGTWKQTLVLLR------   98 (377)
T ss_dssp             SCBCEEEEETTEEEECCC---BCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC------CCCCEEECCC------
T ss_pred             CEEEEEEccCCceEEEEE---EecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEecc------
Confidence            345677877777766542   221111 1222222 45666777643     458889988876 544443221      


Q ss_pred             ccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCc-EEEeecCCCCCC-CcccceEEEE--CCE
Q 010571           80 EDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPV-ARGGHSVTLV--GSR  153 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~-~r~~~~~~~~--~~~  153 (507)
                                .......+.+  ++++++.|+.+.      .+.+||+.+.. |....   .+.. ......++.+  ++.
T Consensus        99 ----------~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           99 ----------LNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSK---HLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             ----------CSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCE---EECSSCCSCEEEEEECTTSS
T ss_pred             ----------cCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeee---EeecccCCCeEEEEEcCCCC
Confidence                      1111222222  456666666432      37788877664 22221   1111 1111222233  456


Q ss_pred             EEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          154 LIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       154 l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      +++.|+.+      ..+.+||+.+.
T Consensus       160 ~l~~~~~d------~~i~iwd~~~~  178 (377)
T 3dwl_C          160 LLAAGCAD------RKAYVLSAYVR  178 (377)
T ss_dssp             EEEEEESS------SCEEEEEECCS
T ss_pred             EEEEEeCC------CEEEEEEEEec
Confidence            67777654      35888887543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.97  E-value=0.52  Score=50.47  Aligned_cols=189  Identities=12%  Similarity=0.051  Sum_probs=94.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.++++|+.     ...+.+||..++.....-....                .........-++..++.|+.+      
T Consensus        24 ~~~~la~~~~-----~g~v~iwd~~~~~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~d------   76 (814)
T 3mkq_A           24 TEPWVLTTLY-----SGRVEIWNYETQVEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSDD------   76 (814)
T ss_dssp             SSSEEEEEET-----TSEEEEEETTTTEEEEEEECCS----------------SCEEEEEEEGGGTEEEEEETT------
T ss_pred             CCCEEEEEeC-----CCEEEEEECCCCceEEEEecCC----------------CcEEEEEEeCCCCEEEEEeCC------
Confidence            4555666653     2468899998876543322110                111111122255666666642      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCC-cEEEeecCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQTPPAPR  193 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g~~p~~r  193 (507)
                      ..+.+||..++.......  ..+   ....++.+  ++..++.|+.+      ..+.+||+.+. ....... +.   ..
T Consensus        77 g~i~vw~~~~~~~~~~~~--~~~---~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~-~~---~~  141 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDFE--AHP---DYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE-GH---EH  141 (814)
T ss_dssp             SEEEEEETTTCCEEEEEE--CCS---SCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-CC---SS
T ss_pred             CeEEEEECCCCcEEEEEe--cCC---CCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc-CC---CC
Confidence            358899998887644321  111   11122222  34455566542      35888998765 3322221 11   11


Q ss_pred             CCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE-E--CCEEEEEeccCCCCCcc
Q 010571          194 YDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT-I--DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       194 ~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~--~~~l~v~GG~~~~~~~~  269 (507)
                      .-.+++... ++.+++.|+.+     ..+.+||+.+..-..... ..  .......++. .  ++.++++|+.++     
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~-~~--~~~~v~~~~~~~~~~~~~l~~~~~dg-----  208 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLT-TG--QERGVNYVDYYPLPDKPYMITASDDL-----  208 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETT-----SEEEEEETTCSSCSEEEE-CC--CTTCCCEEEECCSTTCCEEEEECTTS-----
T ss_pred             cEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeEEe-cC--CCCCEEEEEEEECCCCCEEEEEeCCC-----
Confidence            122333344 45577777755     468889986543222111 11  1111112222 2  566777777443     


Q ss_pred             eEEEEEcCcCe
Q 010571          270 ETIVLNMTKLA  280 (507)
Q Consensus       270 d~~~~d~~~~~  280 (507)
                      .+.+||+.+..
T Consensus       209 ~i~~~d~~~~~  219 (814)
T 3mkq_A          209 TIKIWDYQTKS  219 (814)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            57888887765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.95  E-value=0.61  Score=45.51  Aligned_cols=66  Identities=17%  Similarity=0.170  Sum_probs=36.4

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++..++.|+.+      ..+.+||..++.....-. +    ......++.+  ++.+++.|+.+      +.+.++|+.+
T Consensus       203 ~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~-~----h~~~v~~~~~~~~g~~l~s~s~D------~~v~vwd~~~  265 (410)
T 1vyh_C          203 NGDHIVSASRD------KTIKMWEVQTGYCVKTFT-G----HREWVRMVRPNQDGTLIASCSND------QTVRVWVVAT  265 (410)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTCCEEEEEE-C----CSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEECCCCcEEEEEe-C----CCccEEEEEECCCCCEEEEEcCC------CeEEEEECCC
Confidence            45566666643      358899998876433221 1    1111122222  45667777654      3588888877


Q ss_pred             CcEEE
Q 010571          178 MTWDA  182 (507)
Q Consensus       178 ~~W~~  182 (507)
                      .....
T Consensus       266 ~~~~~  270 (410)
T 1vyh_C          266 KECKA  270 (410)
T ss_dssp             CCEEE
T ss_pred             Cceee
Confidence            66543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.95  E-value=0.56  Score=44.45  Aligned_cols=139  Identities=9%  Similarity=0.048  Sum_probs=69.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|..++.+..+.....                .......+.+  ++.+++.|+.+.   
T Consensus        72 ~g~~l~s~s~D-----~~v~iw~~~~~~~~~~~~~~~----------------h~~~v~~v~~sp~~~~l~s~s~D~---  127 (345)
T 3fm0_A           72 CGNYLASASFD-----ATTCIWKKNQDDFECVTTLEG----------------HENEVKSVAWAPSGNLLATCSRDK---  127 (345)
T ss_dssp             TSSEEEEEETT-----SCEEEEEECCC-EEEEEEECC----------------CSSCEEEEEECTTSSEEEEEETTS---
T ss_pred             CCCEEEEEECC-----CcEEEEEccCCCeEEEEEccC----------------CCCCceEEEEeCCCCEEEEEECCC---
Confidence            45566666643     347778887776655444321                1111223333  566777776532   


Q ss_pred             CcceEEEEECCCCc-EEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 010571          115 DSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~  191 (507)
                         .+.++|+.+.. +..+..   +.........+.+  ++.+++.|+.+      ..+.+||..+..|........  .
T Consensus       128 ---~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d------~~i~~w~~~~~~~~~~~~~~~--h  193 (345)
T 3fm0_A          128 ---SVWVWEVDEEDEYECVSV---LNSHTQDVKHVVWHPSQELLASASYD------DTVKLYREEEDDWVCCATLEG--H  193 (345)
T ss_dssp             ---CEEEEEECTTSCEEEEEE---ECCCCSCEEEEEECSSSSCEEEEETT------SCEEEEEEETTEEEEEEEECC--C
T ss_pred             ---eEEEEECCCCCCeEEEEE---ecCcCCCeEEEEECCCCCEEEEEeCC------CcEEEEEecCCCEEEEEEecC--C
Confidence               37778876542 332221   1111111122222  34666667654      258888988888765432111  1


Q ss_pred             CCCCceEEEEcCcEEEEEeCCC
Q 010571          192 PRYDHSAALHANRYLIVFGGCS  213 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~i~GG~~  213 (507)
                      ...-.+++...++.+++.|+.+
T Consensus       194 ~~~v~~l~~sp~g~~l~s~s~D  215 (345)
T 3fm0_A          194 ESTVWSLAFDPSGQRLASCSDD  215 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETT
T ss_pred             CCceEEEEECCCCCEEEEEeCC
Confidence            1111233334455567777755

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=95.94  E-value=1.1  Score=42.06  Aligned_cols=149  Identities=13%  Similarity=0.097  Sum_probs=72.4

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCC-CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLET-MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t-~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ++..++.|+.+      ..+.+||+.+ ..-...-. +   ....-.+++...++.+++.|+.+     ..+.+||+.+.
T Consensus       186 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~  250 (369)
T 3zwl_B          186 KGKYIIAGHKD------GKISKYDVSNNYEYVDSID-L---HEKSISDMQFSPDLTYFITSSRD-----TNSFLVDVSTL  250 (369)
T ss_dssp             GGCEEEEEETT------SEEEEEETTTTTEEEEEEE-C---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTC
T ss_pred             CCCEEEEEcCC------CEEEEEECCCCcEeEEEEe-c---CCCceeEEEECCCCCEEEEecCC-----ceEEEEECCCC
Confidence            34566666543      3699999987 33322211 1   11112233444455566777654     46899999887


Q ss_pred             cEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCC---------cceEEEEEcCcCeeEEeccCCCCCCCCCCCC
Q 010571          230 EWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNG---------CQETIVLNMTKLAWSILTSVKGRNPLASEGL  298 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~---------~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~  298 (507)
                      .....-.     .. .....+.+  ++..+++|+.++...         ...+.+||..+..-..  .+..      +..
T Consensus       251 ~~~~~~~-----~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~------~~~  316 (369)
T 3zwl_B          251 QVLKKYE-----TD-CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG--RVQG------HFG  316 (369)
T ss_dssp             CEEEEEE-----CS-SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE--EEEC------CSS
T ss_pred             ceeeeec-----CC-CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh--heec------ccC
Confidence            6544321     11 11122223  456666665443211         1146778876654222  1111      111


Q ss_pred             ceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          299 SVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       299 ~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      ....+.+..+..+++.||.+    ..+.++++..
T Consensus       317 ~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~  346 (369)
T 3zwl_B          317 PLNTVAISPQGTSYASGGED----GFIRLHHFEK  346 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETT----SEEEEEEECH
T ss_pred             cEEEEEECCCCCEEEEEcCC----CeEEEEECcc
Confidence            23333444344566667754    4577777653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=95.88  E-value=0.25  Score=46.66  Aligned_cols=106  Identities=19%  Similarity=0.224  Sum_probs=53.5

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEE-----ECCEEEEEcCcCCCCCccCcEEE
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-----VGSRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~-----~~~~l~~~GG~~~~~~~~~~~~~  172 (507)
                      ++.+++.|+.+.      .+.+||+.+..  ...+... .....+...+++.     -++.+++.|+.+      ..+.+
T Consensus       128 ~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i  194 (357)
T 3i2n_A          128 GAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKL  194 (357)
T ss_dssp             CCCEEEEEETTS------CEEEECTTSCSSCSEEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEE
T ss_pred             CccEEEEEeCCC------eEEEEeCCCCCCcceecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccC------CeEEE
Confidence            455666666432      38889988764  3333210 0000111222221     355666766643      36999


Q ss_pred             EEcCCCcEEEeecCCCCCCCCCCceEEEEc---CcEEEEEeCCCCCcCCCcEEEEECCC
Q 010571          173 LDLETMTWDAVEVTQTPPAPRYDHSAALHA---NRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       173 ~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~---~~~l~i~GG~~~~~~~~~i~~~d~~~  228 (507)
                      ||+.+..-.....   .  ...-.++....   ++..++.|+.+     ..+.+||+.+
T Consensus       195 ~d~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~  243 (357)
T 3i2n_A          195 FDLRNMALRWETN---I--KNGVCSLEFDRKDISMNKLVATSLE-----GKFHVFDMRT  243 (357)
T ss_dssp             EETTTTEEEEEEE---C--SSCEEEEEESCSSSSCCEEEEEEST-----TEEEEEEEEE
T ss_pred             EECccCceeeecC---C--CCceEEEEcCCCCCCCCEEEEECCC-----CeEEEEeCcC
Confidence            9998876533321   1  11122333333   44566677654     3577777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.88  E-value=1.3  Score=42.49  Aligned_cols=190  Identities=10%  Similarity=0.010  Sum_probs=91.4

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC-----------CCcccceEEEECCEEEEEcCcCCCCCccC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP-----------VARGGHSVTLVGSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p-----------~~r~~~~~~~~~~~l~~~GG~~~~~~~~~  168 (507)
                      ++..++.|+.+      ..+.+||..++...........+           ......+++...+..++.|+.+      .
T Consensus       160 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g  227 (425)
T 1r5m_A          160 DGTHIISMDVE------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------G  227 (425)
T ss_dssp             TSSEEEEEETT------CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------G
T ss_pred             CCCEEEEEecC------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------C
Confidence            45555566542      23888998887654433111111           0000223333344446666643      3


Q ss_pred             cEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceE
Q 010571          169 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA  248 (507)
Q Consensus       169 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~  248 (507)
                      .+..||+.+..-.....    .....-.+++...++.+++.|+.+     ..+.+||+.+......-  .  .....-.+
T Consensus       228 ~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~  294 (425)
T 1r5m_A          228 AIFVYQITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCF--Y--GHSQSIVS  294 (425)
T ss_dssp             CEEEEETTCSSCSEEEC----CCSSCEEEEEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEE--C--CCSSCEEE
T ss_pred             eEEEEEcCCCceeeeec----cCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCccceEe--c--CCCccEEE
Confidence            69999998764322211    111112334444555566677654     35888887765422211  0  01111223


Q ss_pred             EEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEE
Q 010571          249 GITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVM  328 (507)
Q Consensus       249 ~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~  328 (507)
                      ++...+.+++.|+.++     .+.+||+.+..-.......        ......+.+..+..++++|+.+    ..+.+|
T Consensus       295 ~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~d----g~i~i~  357 (425)
T 1r5m_A          295 ASWVGDDKVISCSMDG-----SVRLWSLKQNTLLALSIVD--------GVPIFAGRISQDGQKYAVAFMD----GQVNVY  357 (425)
T ss_dssp             EEEETTTEEEEEETTS-----EEEEEETTTTEEEEEEECT--------TCCEEEEEECTTSSEEEEEETT----SCEEEE
T ss_pred             EEECCCCEEEEEeCCC-----cEEEEECCCCcEeEecccC--------CccEEEEEEcCCCCEEEEEECC----CeEEEE
Confidence            3333333666666432     5888998776533221111        1123333444344466666654    457777


Q ss_pred             ECC
Q 010571          329 RLK  331 (507)
Q Consensus       329 ~~~  331 (507)
                      |+.
T Consensus       358 ~~~  360 (425)
T 1r5m_A          358 DLK  360 (425)
T ss_dssp             ECH
T ss_pred             ECC
Confidence            774

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.86  E-value=0.29  Score=45.47  Aligned_cols=212  Identities=8%  Similarity=-0.059  Sum_probs=101.9

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ..++||+.+..-..+..    + .+. .+++.. ++.+|+..       .+.+++||+.++.+..+.....         
T Consensus        36 ~i~~~d~~~~~~~~~~~----~-~~~-~~i~~~~dG~l~v~~-------~~~l~~~d~~~g~~~~~~~~~~---------   93 (297)
T 3g4e_A           36 KVCRWDSFTKQVQRVTM----D-APV-SSVALRQSGGYVATI-------GTKFCALNWKEQSAVVLATVDN---------   93 (297)
T ss_dssp             EEEEEETTTCCEEEEEC----S-SCE-EEEEEBTTSSEEEEE-------TTEEEEEETTTTEEEEEEECCT---------
T ss_pred             EEEEEECCCCcEEEEeC----C-Cce-EEEEECCCCCEEEEE-------CCeEEEEECCCCcEEEEEecCC---------
Confidence            35677777666554432    1 111 222322 45555542       2469999999998877664321         


Q ss_pred             CccCCCCCccceeeEEECCEEEEEcccCCC-----CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEE
Q 010571           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKK-----SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLI  155 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~  155 (507)
                         ..+..+....++.-+++||+..-....     ......++.+|+. +....+..  ....+   ..++..  +..+|
T Consensus        94 ---~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~--~~~~p---ngi~~spdg~~ly  164 (297)
T 3g4e_A           94 ---DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD--QVDIS---NGLDWSLDHKIFY  164 (297)
T ss_dssp             ---TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE--EESBE---EEEEECTTSCEEE
T ss_pred             ---CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee--ccccc---cceEEcCCCCEEE
Confidence               111122222233336777764211110     1124568889875 33333321  11111   122222  33677


Q ss_pred             EEcCcCCCCCccCcEEEEEc--CCCcEEEeecCCCCCC-CCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          156 IFGGEDRSRKLLNDVHFLDL--ETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       156 ~~GG~~~~~~~~~~~~~~d~--~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      +....      .+.++.||+  .++...........+. ...-..++.-.++.||+....+     +.|.+||+.++...
T Consensus       165 v~~~~------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~~  233 (297)
T 3g4e_A          165 YIDSL------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKRL  233 (297)
T ss_dssp             EEEGG------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCEE
T ss_pred             EecCC------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceEE
Confidence            76532      346888876  4555432211001111 1111234554566788764322     45999999877654


Q ss_pred             eeeecCCCCCCCcceEEEEEC----CEEEEEecc
Q 010571          233 QPEIKGDLVTGRAGHAGITID----ENWYIVGGG  262 (507)
Q Consensus       233 ~~~~~~~~p~~r~~~~~~~~~----~~l~v~GG~  262 (507)
                      ..-   ..|.  ...+++.++    +.|||....
T Consensus       234 ~~i---~~p~--~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          234 QTV---KLPV--DKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEE---ECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEE---ECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence            421   1222  223444453    367777553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=95.84  E-value=1.1  Score=41.15  Aligned_cols=220  Identities=11%  Similarity=0.044  Sum_probs=111.3

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      ...+.||+... ...+..    +. ..-++++.. ++.||+....     ...+.+||+.+++...+.....        
T Consensus        50 ~~i~~~~~~~~-~~~~~~----~~-~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~--------  110 (296)
T 3e5z_A           50 NRTWAWSDDGQ-LSPEMH----PS-HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIADSFE--------  110 (296)
T ss_dssp             TEEEEEETTSC-EEEEES----SC-SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEECEET--------
T ss_pred             CEEEEEECCCC-eEEEEC----CC-CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccC--------
Confidence            34677888877 555542    11 112333333 5667765431     2468999998888766543211        


Q ss_pred             CCccCCCCCccceeeEEECCEEEEE----cccCC-------CCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE
Q 010571           82 SGLLEVLPPMSDHCMVKWGTKLLIL----GGHYK-------KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV  150 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~  150 (507)
                          ..+..+....++.-+++||+.    |....       .......++.||+. ++...+..  ....+   ..++.-
T Consensus       111 ----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s  180 (296)
T 3e5z_A          111 ----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFL  180 (296)
T ss_dssp             ----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEEC
T ss_pred             ----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEEC
Confidence                011112222333336788886    43210       01113469999987 66555431  11111   122222


Q ss_pred             -CCEEEEEcCcCCCCCccCcEEEEEcC-CCcE-EEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECC
Q 010571          151 -GSRLIIFGGEDRSRKLLNDVHFLDLE-TMTW-DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       151 -~~~l~~~GG~~~~~~~~~~~~~~d~~-t~~W-~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~  227 (507)
                       ++++++.+..      .+.+++||+. +++. ...... ... ...-.+++...++.+|+..+       +.|.+||+.
T Consensus       181 ~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~-~~~-~~~p~~i~~d~~G~l~v~~~-------~~v~~~~~~  245 (296)
T 3e5z_A          181 PSGNLLVSDTG------DNATHRYCLNARGETEYQGVHF-TVE-PGKTDGLRVDAGGLIWASAG-------DGVHVLTPD  245 (296)
T ss_dssp             TTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEE-CCS-SSCCCSEEEBTTSCEEEEET-------TEEEEECTT
T ss_pred             CCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEe-eCC-CCCCCeEEECCCCCEEEEcC-------CeEEEECCC
Confidence             3455544322      3469999986 5665 222211 111 11112455556777888762       569999998


Q ss_pred             CCcEEeeeecCCCCCCCcceEEEEE-C---CEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571          228 TNEWSQPEIKGDLVTGRAGHAGITI-D---ENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       228 ~~~W~~~~~~~~~p~~r~~~~~~~~-~---~~l~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      ......+..    |..   ...+.+ +   +.||+...       ..++.|++.+..
T Consensus       246 g~~~~~~~~----~~~---~~~~~f~~~d~~~L~v~t~-------~~l~~~~~~~~~  288 (296)
T 3e5z_A          246 GDELGRVLT----PQT---TSNLCFGGPEGRTLYMTVS-------TEFWSIETNVRG  288 (296)
T ss_dssp             SCEEEEEEC----SSC---CCEEEEESTTSCEEEEEET-------TEEEEEECSCCB
T ss_pred             CCEEEEEEC----CCC---ceeEEEECCCCCEEEEEcC-------CeEEEEEccccc
Confidence            555544432    211   223333 2   24666532       258888877664

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.83  E-value=0.18  Score=42.76  Aligned_cols=22  Identities=14%  Similarity=0.317  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      .++....++-+++.-++.++++
T Consensus       134 D~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A          134 DFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444445555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.82  E-value=0.039  Score=57.35  Aligned_cols=7  Identities=14%  Similarity=0.596  Sum_probs=2.7

Q ss_pred             EEEECCC
Q 010571           56 QVFDLRS   62 (507)
Q Consensus        56 ~~~d~~t   62 (507)
                      ..+++..
T Consensus        78 ~~L~L~~   84 (597)
T 3oja_B           78 ELLNLND   84 (597)
T ss_dssp             SEEECTT
T ss_pred             cEEECCC
Confidence            3344333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.79  E-value=0.57  Score=48.86  Aligned_cols=151  Identities=13%  Similarity=0.001  Sum_probs=81.1

Q ss_pred             cceEEEEECC-CC---cEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCC-C
Q 010571          116 SMIVRFIDLE-TN---LCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT-P  189 (507)
Q Consensus       116 ~~~~~~~d~~-t~---~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~-~  189 (507)
                      ...++++|+. ++   ....+..   .. .......+.. ++++|+.+..++    ...++.+|+.++++..+..... .
T Consensus       216 ~~~i~~~d~~~~g~~~~~~~l~~---~~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          216 GTELKTARVTEDGRFADTRTLLG---GP-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEEE---ET-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBS
T ss_pred             CcEEEEEEECCCCcccccEEeCC---CC-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccc
Confidence            4579999998 57   3444431   00 1111122222 566776665432    2369999998888887753211 0


Q ss_pred             CCCCC---CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEE-EEECCEEEEEeccCCC
Q 010571          190 PAPRY---DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG-ITIDENWYIVGGGDNN  265 (507)
Q Consensus       190 p~~r~---~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~-~~~~~~l~v~GG~~~~  265 (507)
                      -.+..   ....+...++.+++.+..    ....+|.+|+.++....+..    +. ...... ..-++.+++..+..  
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~d~~~~~~~~l~~----~~-~~~~~~~s~~~~~~~~~~~~~--  356 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK----GAAVLGILDPESGELVDAAG----PW-TEWAATLTVSGTRAVGVAASP--  356 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS----SSCEEEEEETTTTEEEECCS----SC-CEEEEEEEEETTEEEEEEEET--
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc----CccEEEEEECCCCcEEEecC----CC-CeEEEEEecCCCEEEEEEcCC--
Confidence            00100   123333445656665543    24678999998887766531    11 111122 22355666554422  


Q ss_pred             CCcceEEEEEcCcCeeEEec
Q 010571          266 NGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       266 ~~~~d~~~~d~~~~~W~~~~  285 (507)
                      .....+|.+|+.+.....+.
T Consensus       357 ~~~~~i~~~d~~~g~~~~l~  376 (662)
T 3azo_A          357 RTAYEVVELDTVTGRARTIG  376 (662)
T ss_dssp             TEEEEEEEEETTTCCEEEEE
T ss_pred             CCCCEEEEEECCCCceEEee
Confidence            12447889998888777763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.75  E-value=1.1  Score=40.37  Aligned_cols=231  Identities=13%  Similarity=0.061  Sum_probs=113.5

Q ss_pred             ceEEEE-CCEEEE-EcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEc
Q 010571           31 HAAAVF-DQKLYI-VGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILG  107 (507)
Q Consensus        31 ~~~~~~-~~~lyv-~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~G  107 (507)
                      ++++.. ++.||+ ....     ...+.+||+.+..........                 ...-++++.. ++.||+..
T Consensus        27 ~~i~~~~~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~-----------------~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNG-----------------LYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             EEEEECTTCCEEEEECSS-----SCEEEEECC-----EECCCCS-----------------CCSCCCEEECTTCCEEEEE
T ss_pred             cceEECCCCCEEEEccCC-----CCcEEEecCCCcccceEeeCC-----------------cCCcceeEECCCCCEEEEc
Confidence            344443 467888 4331     246888988776544332211                 0111233333 56788875


Q ss_pred             ccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeec
Q 010571          108 GHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV  185 (507)
Q Consensus       108 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~  185 (507)
                      .       ...+.+||+.+........    . .........+  ++.+|+....      .+.+.+|+..+........
T Consensus        85 ~-------~~~i~~~d~~~~~~~~~~~----~-~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~  146 (270)
T 1rwi_B           85 F-------NNRVVTLAAGSNNQTVLPF----D-GLNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPF  146 (270)
T ss_dssp             T-------TTEEEEECTTCSCCEECCC----C-SCSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCC
T ss_pred             C-------CCEEEEEeCCCceEeeeec----C-CcCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeecc
Confidence            4       1248999988776544321    1 1111222333  4578876432      3468888876655443321


Q ss_pred             CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccC
Q 010571          186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGD  263 (507)
Q Consensus       186 ~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~  263 (507)
                      . ..   ..-..++...++.+|+.....     +.+.+||+.+..-..... ...    .....+.+  ++.+|+....+
T Consensus       147 ~-~~---~~p~~i~~~~~g~l~v~~~~~-----~~i~~~~~~~~~~~~~~~-~~~----~~p~~i~~d~~g~l~v~~~~~  212 (270)
T 1rwi_B          147 T-GL---NDPDGVAVDNSGNVYVTDTDN-----NRVVKLEAESNNQVVLPF-TDI----TAPWGIAVDEAGTVYVTEHNT  212 (270)
T ss_dssp             C-SC---CSCCCEEECTTCCEEEEEGGG-----TEEEEECTTTCCEEECCC-SSC----CSEEEEEECTTCCEEEEETTT
T ss_pred             c-cC---CCceeEEEeCCCCEEEEECCC-----CEEEEEecCCCceEeecc-cCC----CCceEEEECCCCCEEEEECCC
Confidence            1 11   112345555556688765432     468999987765443211 111    22233444  34788765422


Q ss_pred             CCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          264 NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       264 ~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                           +.+.+||+....-..+... .       ......+.++.+..||+....    .+.|.+|++..
T Consensus       213 -----~~v~~~~~~~~~~~~~~~~-~-------~~~p~~i~~~~~g~l~v~~~~----~~~v~~~~~~~  264 (270)
T 1rwi_B          213 -----NQVVKLLAGSTTSTVLPFT-G-------LNTPLAVAVDSDRTVYVADRG----NDRVVKLTSLE  264 (270)
T ss_dssp             -----SCEEEECTTCSCCEECCCC-S-------CSCEEEEEECTTCCEEEEEGG----GTEEEEECCCG
T ss_pred             -----CcEEEEcCCCCcceeeccC-C-------CCCceeEEECCCCCEEEEECC----CCEEEEEcCCC
Confidence                 2478888876543322110 0       112333444444457776543    35677777643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=95.75  E-value=1.3  Score=41.17  Aligned_cols=147  Identities=19%  Similarity=0.123  Sum_probs=73.4

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEEC-CEEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..+.++|+.++.....-..+..              ..+..+.+..-+ +.+|+.++.      ...+.+||+.+++-..
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~   70 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADA--------------GPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLG   70 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTC--------------TTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEE
T ss_pred             CeEEEEECCCCcEEEEEEcCCC--------------CCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEe
Confidence            5689999988765433222110              001112222223 467776642      2359999999887543


Q ss_pred             eecCCCCCC--CcccceEEEE-C-CEEEEEcCc---CCCCC--ccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEc
Q 010571          132 METSGKVPV--ARGGHSVTLV-G-SRLIIFGGE---DRSRK--LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA  202 (507)
Q Consensus       132 ~~~~g~~p~--~r~~~~~~~~-~-~~l~~~GG~---~~~~~--~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~  202 (507)
                      ....+. +.  ...-..++.- + +.+|+....   .....  ..+.+.+||+.+.+....-..+.     ..+.++...
T Consensus        71 ~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~  144 (337)
T 1pby_B           71 RIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWAR  144 (337)
T ss_dssp             EEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECT
T ss_pred             eEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-----CcceeEECC
Confidence            221111 00  0011222222 3 367766421   00000  13579999998877654432221     123344444


Q ss_pred             CcE-EEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          203 NRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       203 ~~~-l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ++. +|+.+        +.++++|+.++.-..
T Consensus       145 dg~~l~~~~--------~~i~~~d~~~~~~~~  168 (337)
T 1pby_B          145 DGSKLYGLG--------RDLHVMDPEAGTLVE  168 (337)
T ss_dssp             TSSCEEEES--------SSEEEEETTTTEEEE
T ss_pred             CCCEEEEeC--------CeEEEEECCCCcEee
Confidence            443 55541        569999998876543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.74  E-value=1.6  Score=42.22  Aligned_cols=191  Identities=11%  Similarity=0.046  Sum_probs=95.1

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++.+++.|+.+.      .+.+||+.++.-....     ........++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~  170 (420)
T 3vl1_A          108 QMRRFILGTTEG------DIKVLDSNFNLQREID-----QAHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKD  170 (420)
T ss_dssp             SSCEEEEEETTS------CEEEECTTSCEEEEET-----TSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTT
T ss_pred             CCCEEEEEECCC------CEEEEeCCCcceeeec-----ccccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCC
Confidence            667777776432      4888998877544331     111112222333  44566666643      3589999876


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE------
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT------  251 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~------  251 (507)
                      .+-...-. +   ....-.+++...++.+++.|+.+     ..+.+||+.+..-...-.....+.. .-.+++.      
T Consensus       171 ~~~~~~~~-~---h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  240 (420)
T 3vl1_A          171 GSNPRTLI-G---HRATVTDIAIIDRGRNVLSASLD-----GTIRLWECGTGTTIHTFNRKENPHD-GVNSIALFVGTDR  240 (420)
T ss_dssp             CCCCEEEE-C---CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEEEECBTTBTTC-CEEEEEEEECCCS
T ss_pred             CcCceEEc-C---CCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeECCCCceeEEeecCCCCCC-CccEEEEecCCcc
Confidence            54322111 1   11112234444555566777754     3588899887654332111100100 0011111      


Q ss_pred             ----------------ECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceE-EEEE
Q 010571          252 ----------------IDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH-LVAF  314 (507)
Q Consensus       252 ----------------~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-l~v~  314 (507)
                                      -++.+++.|+.++     .+.+||+.+..-...  +..     .+......+....+.. +++.
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~-----~~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKEQTIQ--LPS-----KFTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCCEEEE--ECC-----TTSSCEEEEEECSSCTTEEEE
T ss_pred             eeeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCceeEE--ccc-----ccCCCceeEEEeCCCCCEEEE
Confidence                            1456777776543     378899877642221  111     0112233333433333 6666


Q ss_pred             cccCCCcCCeEEEEECCCC
Q 010571          315 GGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       315 GG~~~~~~~~v~~~~~~~~  333 (507)
                      |+.+    ..+.++|+...
T Consensus       309 g~~d----g~i~vwd~~~~  323 (420)
T 3vl1_A          309 GYEN----GMLAQWDLRSP  323 (420)
T ss_dssp             EETT----SEEEEEETTCT
T ss_pred             EeCC----CeEEEEEcCCC
Confidence            7754    46888888654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.74  E-value=1.3  Score=41.37  Aligned_cols=183  Identities=12%  Similarity=0.093  Sum_probs=93.8

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++..++.|+..      ..+.+||..++.-.....   .. . ....++.+  ++..++.|+.+      ..+.+||+.+
T Consensus       133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~---~~-~-~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~  195 (321)
T 3ow8_A          133 DSQYLATGTHV------GKVNIFGVESGKKEYSLD---TR-G-KFILSIAYSPDGKYLASGAID------GIINIFDIAT  195 (321)
T ss_dssp             TSSEEEEECTT------SEEEEEETTTCSEEEEEE---CS-S-SCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCceeEEec---CC-C-ceEEEEEECCCCCEEEEEcCC------CeEEEEECCC
Confidence            56666666542      347888888775432211   01 1 11122223  45666777654      3589999988


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCE
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN  255 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~  255 (507)
                      ++-...-. +.   ...-.+++...++.+++.|+.+     ..+.+||+.+......     +......-..+.+  ++.
T Consensus       196 ~~~~~~~~-~h---~~~v~~l~~spd~~~l~s~s~d-----g~i~iwd~~~~~~~~~-----~~~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          196 GKLLHTLE-GH---AMPIRSLTFSPDSQLLVTASDD-----GYIKIYDVQHANLAGT-----LSGHASWVLNVAFCPDDT  261 (321)
T ss_dssp             TEEEEEEC-CC---SSCCCEEEECTTSCEEEEECTT-----SCEEEEETTTCCEEEE-----ECCCSSCEEEEEECTTSS
T ss_pred             CcEEEEEc-cc---CCceeEEEEcCCCCEEEEEcCC-----CeEEEEECCCcceeEE-----EcCCCCceEEEEECCCCC
Confidence            76433221 11   1112234444566677777765     3588999887655432     1111111223333  456


Q ss_pred             EEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEEC
Q 010571          256 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       256 l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~  330 (507)
                      .++.|+.++     .+.++|+.+..-..  .+...      ......+.+..+...++.||.++    .+.++|.
T Consensus       262 ~l~s~s~D~-----~v~iwd~~~~~~~~--~~~~h------~~~v~~v~~s~~g~~l~s~~~d~----~i~vwd~  319 (321)
T 3ow8_A          262 HFVSSSSDK-----SVKVWDVGTRTCVH--TFFDH------QDQVWGVKYNGNGSKIVSVGDDQ----EIHIYDC  319 (321)
T ss_dssp             EEEEEETTS-----CEEEEETTTTEEEE--EECCC------SSCEEEEEECTTSSEEEEEETTC----CEEEEEC
T ss_pred             EEEEEeCCC-----cEEEEeCCCCEEEE--EEcCC------CCcEEEEEECCCCCEEEEEeCCC----eEEEEeC
Confidence            777777543     37788887764322  22111      11233344444444566677553    4555553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.74  E-value=1.2  Score=40.67  Aligned_cols=233  Identities=9%  Similarity=0.080  Sum_probs=116.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCC-ccceeeEEE--CCEEEEEcccCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP-MSDHCMVKW--GTKLLILGGHYKKS  113 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~  113 (507)
                      ++.+|+.+..     ...+.+||+.......+.....             .+.. ..-+.++..  ++.||+.+...   
T Consensus        40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~-------------~~~~~~~p~~i~~~~~~g~l~v~~~~~---   98 (286)
T 1q7f_A           40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGK-------------RDSQLLYPNRVAVVRNSGDIIVTERSP---   98 (286)
T ss_dssp             TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSS-------------STTCBSSEEEEEEETTTTEEEEEECGG---
T ss_pred             CCCEEEEECC-----CCEEEEECCCCcEEEEecccCC-------------CcccccCceEEEEEcCCCeEEEEcCCC---
Confidence            4678877542     2468899987544333332110             0001 112334432  68899886321   


Q ss_pred             CCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 010571          114 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       114 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~  191 (507)
                        ...+.+||+....-..+..    +. ......+.+  ++.+|+....      .+.+.+||+.......+...+..  
T Consensus        99 --~~~i~~~d~~g~~~~~~~~----~~-~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~--  163 (286)
T 1q7f_A           99 --THQIQIYNQYGQFVRKFGA----TI-LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHL--  163 (286)
T ss_dssp             --GCEEEEECTTSCEEEEECT----TT-CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTC--
T ss_pred             --CCEEEEECCCCcEEEEecC----cc-CCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCcc--
Confidence              2358899955443333321    11 111122333  4578876532      34699999765444444321111  


Q ss_pred             CCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcc
Q 010571          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~  269 (507)
                       ..-.+++...++.+|+.+..     .+.|.+||+.......+...+..    .....+.+  ++++|+....++    .
T Consensus       164 -~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~----~~p~~i~~d~~G~l~v~~~~~~----~  229 (286)
T 1q7f_A          164 -EFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQYLRQIGGEGIT----NYPIGVGINSNGEILIADNHNN----F  229 (286)
T ss_dssp             -SSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCCEEEEESCTTTS----CSEEEEEECTTCCEEEEECSSS----C
T ss_pred             -CCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCCEEEEEccCCcc----CCCcEEEECCCCCEEEEeCCCC----E
Confidence             11234445556778886543     25799999866544444221111    12233444  467888764332    1


Q ss_pred             eEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          270 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       270 d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                      .+.+||++...-..+.....       ......+.+..+..||+...     .+.+.+|++.
T Consensus       230 ~i~~~~~~g~~~~~~~~~~~-------~~~~~~i~~~~~g~l~vs~~-----~~~v~v~~~~  279 (286)
T 1q7f_A          230 NLTIFTQDGQLISALESKVK-------HAQCFDVALMDDGSVVLASK-----DYRLYIYRYV  279 (286)
T ss_dssp             EEEEECTTSCEEEEEEESSC-------CSCEEEEEEETTTEEEEEET-----TTEEEEEECS
T ss_pred             EEEEECCCCCEEEEEcccCC-------CCcceeEEECCCCcEEEECC-----CCeEEEEEcc
Confidence            57889876554433322110       11122333444446777642     2567777764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=95.73  E-value=1.5  Score=41.93  Aligned_cols=237  Identities=11%  Similarity=0.084  Sum_probs=107.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.-........                +.........  ++.+++.|+...   
T Consensus       111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~---  166 (408)
T 4a11_B          111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNFEE----------------TVYSHHMSPVSTKHCLVAVGTRGP---  166 (408)
T ss_dssp             CTTCEEEEETT-----SEEEEEETTTTEEEEEEECSS----------------CEEEEEECSSCSSCCEEEEEESSS---
T ss_pred             CCcEEEEEeCC-----CeEEEeeCCCCccceeccCCC----------------ceeeeEeecCCCCCcEEEEEcCCC---
Confidence            44566666633     458899998876544332211                1111111111  344666665432   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--C-CEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCC--
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G-SRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQ--  187 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g--  187 (507)
                         .+.+||+.+..-....     ........++.+  + .++++.|+.+      ..+.+||+.+..  ...+....  
T Consensus       167 ---~v~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~  232 (408)
T 4a11_B          167 ---KVQLCDLKSGSCSHIL-----QGHRQEILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLITLDQHNGK  232 (408)
T ss_dssp             ---SEEEEESSSSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEECCTTTTC
T ss_pred             ---eEEEEeCCCcceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCcccccccccccc
Confidence               4888998776432221     111111222333  2 2477777754      248888886543  22221000  


Q ss_pred             ---C-----CCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEE--ECCEEE
Q 010571          188 ---T-----PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT--IDENWY  257 (507)
Q Consensus       188 ---~-----~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~~~~l~  257 (507)
                         .     ......-.+++...++..++.|+.+     ..+.+||+.+..-....................  ..+..+
T Consensus       233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             cceeeccccccccCceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence               0     0011111223333455566677654     358899988765332211111111111111111  123334


Q ss_pred             EEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          258 IVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       258 v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      ++++.+     ..+.+||..+..-..  .+...      ......+.+..+..+++.||.+    ..+.++++...
T Consensus       308 ~~~~~~-----~~i~v~d~~~~~~~~--~~~~~------~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~  366 (408)
T 4a11_B          308 VFVPYG-----STIAVYTVYSGEQIT--MLKGH------YKTVDCCVFQSNFQELYSGSRD----CNILAWVPSLY  366 (408)
T ss_dssp             EEEEET-----TEEEEEETTTCCEEE--EECCC------SSCEEEEEEETTTTEEEEEETT----SCEEEEEECC-
T ss_pred             EEEecC-----CEEEEEECcCCccee--eeccC------CCeEEEEEEcCCCCEEEEECCC----CeEEEEeCCCC
Confidence            444322     257889987765332  22111      1122223333333456667654    35777777554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.69  E-value=0.8  Score=43.69  Aligned_cols=184  Identities=11%  Similarity=0.059  Sum_probs=91.0

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~  176 (507)
                      +++.++.|+.+.      .+.+||..++.-...-   ..  ......++.+   ++.+++.||.+      ..+.++|+.
T Consensus       150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~---~~--h~~~v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSY---NA--HSSEVNCVAACPGKDTIFLSCGED------GRILLWDTR  212 (357)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTTEEEEEE---CC--CSSCEEEEEECTTCSSCEEEEETT------SCEEECCTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEE---cC--CCCCEEEEEEccCCCceeeeeccC------CceEEEECC
Confidence            566777776432      3888999887644332   11  1111222233   23567777653      248888887


Q ss_pred             CCcEEEeecCCCCCCCCCCceEEEE-c-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--
Q 010571          177 TMTWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--  252 (507)
Q Consensus       177 t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--  252 (507)
                      +.+-....   ...........+.+ . ++.+++.|+.+     ..+.+||+.+..-...     .........++.+  
T Consensus       213 ~~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~~~~~-----~~~~~~~v~~l~~sp  279 (357)
T 4g56_B          213 KPKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPDSAQT-----SAVHSQNITGLAYSY  279 (357)
T ss_dssp             SSSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGGGCEE-----ECCCSSCEEEEEECS
T ss_pred             CCceeeee---eeccccccccchhhhhcccceEEEeecc-----cceeEEECCCCcEeEE-----EeccceeEEEEEEcC
Confidence            76533221   11111111222333 2 34477777654     3588899876542111     1111112233333  


Q ss_pred             CC-EEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEc-CceEEEEEcccCCCcCCeEEEEEC
Q 010571          253 DE-NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE-GEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       253 ~~-~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~v~~~~~  330 (507)
                      ++ .+++.|+.++     .+.++|..+..-...  +.       +......+.+. .+..+++.||.+    ..|.++++
T Consensus       280 ~~~~~lasgs~D~-----~i~iwd~~~~~~~~~--~~-------H~~~V~~vafsP~d~~~l~s~s~D----g~v~iW~~  341 (357)
T 4g56_B          280 HSSPFLASISEDC-----TVAVLDADFSEVFRD--LS-------HRDFVTGVAWSPLDHSKFTTVGWD----HKVLHHHL  341 (357)
T ss_dssp             SSSCCEEEEETTS-----CEEEECTTSCEEEEE--CC-------CSSCEEEEEECSSSTTEEEEEETT----SCEEEEEC
T ss_pred             CCCCEEEEEeCCC-----EEEEEECCCCcEeEE--CC-------CCCCEEEEEEeCCCCCEEEEEcCC----CeEEEEEC
Confidence            33 5666666443     378889887754332  11       11123333333 234567777765    35677776


Q ss_pred             C
Q 010571          331 K  331 (507)
Q Consensus       331 ~  331 (507)
                      .
T Consensus       342 ~  342 (357)
T 4g56_B          342 P  342 (357)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.68  E-value=1.1  Score=47.09  Aligned_cols=213  Identities=11%  Similarity=-0.015  Sum_probs=102.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCC---
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS---  113 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---  113 (507)
                      ++..++|.-..++.....++++|+.++.........                .......+-.-+++.++++......   
T Consensus       131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----------------~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE----------------GGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS----------------CCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC----------------cccccceEEecCCCEEEEEEecCCCCCc
Confidence            455555443222223357999999998763110000                0111111122255555555443221   


Q ss_pred             ----CCcceEEEEECCCCcE--EEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeec
Q 010571          114 ----SDSMIVRFIDLETNLC--GVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV  185 (507)
Q Consensus       114 ----~~~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~  185 (507)
                          .....++.+++.+..-  ..+.   ..+........+.+  +++.++++..+..  ..+.++.+|..+..|..+..
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~  269 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVK  269 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEE
T ss_pred             cccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeec
Confidence                1244699999888753  2222   11211111222222  3443333332221  24578888887788888763


Q ss_pred             CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc---EEeeeecCCCCCCCcceEEEEECCEEEEEecc
Q 010571          186 TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITIDENWYIVGGG  262 (507)
Q Consensus       186 ~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~  262 (507)
                      ..    . .....+...++ +|+....+  .....|+.+|+.+..   |+.+..  ..+. ..-......++.+++....
T Consensus       270 ~~----~-~~~~~~~~~g~-l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~--~~~~-~~l~~~~~~~~~lv~~~~~  338 (695)
T 2bkl_A          270 GV----G-AKYEVHAWKDR-FYVLTDEG--APRQRVFEVDPAKPARASWKEIVP--EDSS-ASLLSVSIVGGHLSLEYLK  338 (695)
T ss_dssp             CS----S-CCEEEEEETTE-EEEEECTT--CTTCEEEEEBTTBCSGGGCEEEEC--CCSS-CEEEEEEEETTEEEEEEEE
T ss_pred             CC----C-ceEEEEecCCc-EEEEECCC--CCCCEEEEEeCCCCCccCCeEEec--CCCC-CeEEEEEEECCEEEEEEEE
Confidence            21    1 11222223344 66554322  223579999987654   777632  1111 1112233347777776543


Q ss_pred             CCCCCcceEEEEEcCcCeeEEe
Q 010571          263 DNNNGCQETIVLNMTKLAWSIL  284 (507)
Q Consensus       263 ~~~~~~~d~~~~d~~~~~W~~~  284 (507)
                      +   ....++++++....-..+
T Consensus       339 d---g~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          339 D---ATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             T---TEEEEEEEETTCCEEEEC
T ss_pred             C---CEEEEEEEeCCCCeeEEe
Confidence            3   245688888765544443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.67  E-value=0.17  Score=38.51  Aligned_cols=65  Identities=14%  Similarity=0.173  Sum_probs=28.7

Q ss_pred             HHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH----HHHHHHHHHHHHhHHHHHH
Q 010571          419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS----QTIENEVQILRQQKSAFEQ  483 (507)
Q Consensus       419 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~----~~~e~e~~~~~~~~~~~~~  483 (507)
                      +...+....+.+.++..++..++.++..+.+.+..+.+..+++...    .+.+.+..-|.++++.+|+
T Consensus        32 ~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE  100 (101)
T 3u1c_A           32 KKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE  100 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3333333333333444444444444433344444443333333333    2445566666666665553

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=95.66  E-value=0.65  Score=49.10  Aligned_cols=223  Identities=11%  Similarity=0.039  Sum_probs=108.7

Q ss_pred             EECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCC
Q 010571           35 VFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKK  112 (507)
Q Consensus        35 ~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~  112 (507)
                      .-|+.+|.+-- ..+.....+++.+...+.|+.+-.....           . ...........+  +++.++++.....
T Consensus        81 ~dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~lld~~~l-----------~-~~~~~~~~~~~~SPDg~~la~~~~~~G  147 (710)
T 2xdw_A           81 KKGKRYFYFYN-TGLQNQRVLYVQDSLEGEARVFLDPNIL-----------S-DDGTVALRGYAFSEDGEYFAYGLSASG  147 (710)
T ss_dssp             EETTEEEEEEE-CSSCSSCEEEEESSTTSCCEEEECGGGG-----------C-TTSCEEEEEEEECTTSSEEEEEEEETT
T ss_pred             EECCEEEEEEE-cCCceEEEEEEEcCCCCCcEEEECHHHh-----------c-cCCCEEEEEEEECCCCCEEEEEEcCCC
Confidence            34666665532 1223345678888777777665332210           0 001111222222  5555555433222


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCC----------CCccCcEEEEEcCCCcEE
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRS----------RKLLNDVHFLDLETMTWD  181 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~----------~~~~~~~~~~d~~t~~W~  181 (507)
                      .. ...++++|+.++........    ... ....+.. +++.++++..+..          ......++.+++.+.+..
T Consensus       148 ~~-~~~i~v~d~~tg~~~~~~~~----~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~  221 (710)
T 2xdw_A          148 SD-WVTIKFMKVDGAKELPDVLE----RVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE  221 (710)
T ss_dssp             CS-CEEEEEEETTTTEEEEEEEE----EEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG
T ss_pred             Cc-eEEEEEEECCCCCCCccccc----Ccc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc
Confidence            21 33699999999988764321    111 1123333 4443344333221          022456999999887632


Q ss_pred             --EeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC------C--cEEeeeecCCCCCCCcceEEEE
Q 010571          182 --AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT------N--EWSQPEIKGDLVTGRAGHAGIT  251 (507)
Q Consensus       182 --~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~------~--~W~~~~~~~~~p~~r~~~~~~~  251 (507)
                        .+..  ....+..........++..+++.........++++++|+.+      .  .+..+...    .. .....+.
T Consensus       222 ~~~v~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~----~~-~~~~~~s  294 (710)
T 2xdw_A          222 DILCAE--FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN----FE-GEYDYVT  294 (710)
T ss_dssp             CEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS----SS-SCEEEEE
T ss_pred             ceEEec--cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC----CC-cEEEEEe
Confidence              2211  11112222334444555444444332222257899999876      4  57665321    11 1112222


Q ss_pred             -ECCEEEEEeccCCCCCcceEEEEEcCcC---eeEEec
Q 010571          252 -IDENWYIVGGGDNNNGCQETIVLNMTKL---AWSILT  285 (507)
Q Consensus       252 -~~~~l~v~GG~~~~~~~~d~~~~d~~~~---~W~~~~  285 (507)
                       -++.+++.+..+  .....++++|+.+.   .|..+.
T Consensus       295 ~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          295 NEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             EETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEE
T ss_pred             ccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceecc
Confidence             356677775432  22357899998775   588764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=95.65  E-value=2.1  Score=45.19  Aligned_cols=193  Identities=8%  Similarity=-0.019  Sum_probs=87.2

Q ss_pred             ceEEEEECCC-CcEEEeecCCCCCCCcccceEEEEC-CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571          117 MIVRFIDLET-NLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       117 ~~~~~~d~~t-~~W~~~~~~g~~p~~r~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~  194 (507)
                      ..++++|+.+ +.-..+...  .+.......++.-+ ..|++.......  ....++.+|+.+++...+.......--..
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~  338 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSRDQ--KKLDLVEVTLASNQQRVLAHETSPTWVPL  338 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEETTS--SEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred             eEEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEecccC--CeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence            3788999988 775555311  01111111122233 345544331111  24579999999988776643211000001


Q ss_pred             CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCE-EEEEeccCCCCCcceE
Q 010571          195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN-WYIVGGGDNNNGCQET  271 (507)
Q Consensus       195 ~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~d~  271 (507)
                      ....+...++.+++.++.++   ...+|.+|+... ...+.. +    .......+.+  +++ |++.+. ........+
T Consensus       339 ~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~-~----~~~v~~~~~~s~dg~~l~~~~~-~~~~~~~~l  408 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH-G----NWSVDELLAVDEKAGLAYFRAG-IESARESQI  408 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC-S----SSCEEEEEEEETTTTEEEEEEC-SSCTTCBEE
T ss_pred             CCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee-c----ceEEEeEeEEeCCCCEEEEEEe-CCCCceEEE
Confidence            12334445665665555432   256888887665 554421 1    1111122223  444 444443 222223456


Q ss_pred             EEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       272 ~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      |..+.....-..+...         .........++...| ++...+......++.++....
T Consensus       409 ~~~~~~g~~~~~l~~~---------~~~~~~~~spdg~~l-~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          409 YAVPLQGGQPQRLSKA---------PGMHSASFARNASVY-VDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EEEETTCCCCEECCCS---------CSEEEEEECTTSSEE-EEEEEETTEEEEEEEEETTSC
T ss_pred             EEEEcCCCCeeecccC---------CCceEEEECCCCCEE-EEEecCCCCCCeEEEEEcCCC
Confidence            6666544433333221         111222233333344 333333334567888887543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.56  E-value=1.6  Score=41.99  Aligned_cols=199  Identities=15%  Similarity=0.139  Sum_probs=93.4

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcE-----EEeecCCCCCCCccc-ceEEEE-C-CEEEEEcCcCCCCCccCcEEE
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLC-----GVMETSGKVPVARGG-HSVTLV-G-SRLIIFGGEDRSRKLLNDVHF  172 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W-----~~~~~~g~~p~~r~~-~~~~~~-~-~~l~~~GG~~~~~~~~~~~~~  172 (507)
                      +.+++.|+.+.      .+.+||+.+..=     ..... ......... .+++.. + +.+++.|+.+      ..+.+
T Consensus       126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i  192 (416)
T 2pm9_A          126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASAGSS------NFASI  192 (416)
T ss_dssp             TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEESSS------SCEEE
T ss_pred             CCEEEEEcCCC------eEEEEECCCCcccccccccccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEEE
Confidence            66777776432      388888877640     01110 011111111 222222 2 4677777653      35999


Q ss_pred             EEcCCCcEEEeecCCCCCC--CCCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCC-CCCcceE
Q 010571          173 LDLETMTWDAVEVTQTPPA--PRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV-TGRAGHA  248 (507)
Q Consensus       173 ~d~~t~~W~~~~~~g~~p~--~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p-~~r~~~~  248 (507)
                      ||+.+.+-...-.......  ...-.+++...++ .+++.|+.++.  ...+.+||+.+..-..    .... .......
T Consensus       193 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~~----~~~~~~~~~~v~  266 (416)
T 2pm9_A          193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTPL----QTLNQGHQKGIL  266 (416)
T ss_dssp             EETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSCS----BCCCSCCSSCEE
T ss_pred             EECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCCc----EEeecCccCcee
Confidence            9998876544331110000  1111223333332 46666665421  1267888887643111    1111 1112223


Q ss_pred             EEEE---CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeE
Q 010571          249 GITI---DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEV  325 (507)
Q Consensus       249 ~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v  325 (507)
                      .+.+   ++.+++.|+.++     .+.+||+.+..-..  .+....     +...+....+++..+++.|+.+    ..+
T Consensus       267 ~~~~s~~~~~~l~s~~~dg-----~v~~wd~~~~~~~~--~~~~~~-----~~v~~~~~s~~~~~~l~s~~~d----~~i  330 (416)
T 2pm9_A          267 SLDWCHQDEHLLLSSGRDN-----TVLLWNPESAEQLS--QFPARG-----NWCFKTKFAPEAPDLFACASFD----NKI  330 (416)
T ss_dssp             EEEECSSCSSCEEEEESSS-----EEEEECSSSCCEEE--EEECSS-----SCCCCEEECTTCTTEEEECCSS----SEE
T ss_pred             EEEeCCCCCCeEEEEeCCC-----CEEEeeCCCCccce--eecCCC-----CceEEEEECCCCCCEEEEEecC----CcE
Confidence            3333   456777777543     47888887764322  121110     1111222333332577777764    457


Q ss_pred             EEEECCCCC
Q 010571          326 FVMRLKPRD  334 (507)
Q Consensus       326 ~~~~~~~~~  334 (507)
                      .++++....
T Consensus       331 ~iw~~~~~~  339 (416)
T 2pm9_A          331 EVQTLQNLT  339 (416)
T ss_dssp             EEEESCCCC
T ss_pred             EEEEccCCC
Confidence            788876543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=95.54  E-value=1.4  Score=40.30  Aligned_cols=148  Identities=8%  Similarity=0.042  Sum_probs=73.2

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ++..++.|+.+      ..+..||...  -....   ..+....-.+++...++. ++.|+.+     ..+.+||+.+..
T Consensus       154 ~~~~l~~~~~d------~~i~i~d~~~--~~~~~---~~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~  216 (313)
T 3odt_A          154 SENKFLTASAD------KTIKLWQNDK--VIKTF---SGIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGD  216 (313)
T ss_dssp             TTTEEEEEETT------SCEEEEETTE--EEEEE---CSSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCC
T ss_pred             CCCEEEEEECC------CCEEEEecCc--eEEEE---eccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchh
Confidence            45666666653      3588888332  22111   111222223444456665 6666654     468999988765


Q ss_pred             EEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010571          231 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  309 (507)
Q Consensus       231 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~  309 (507)
                      -...-.     ........+.+ .+..++.|+.++     .+.+||+.+......-..+        ......+....+.
T Consensus       217 ~~~~~~-----~~~~~i~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~--------~~~i~~~~~~~~~  278 (313)
T 3odt_A          217 VLRTYE-----GHESFVYCIKLLPNGDIVSCGEDR-----TVRIWSKENGSLKQVITLP--------AISIWSVDCMSNG  278 (313)
T ss_dssp             EEEEEE-----CCSSCEEEEEECTTSCEEEEETTS-----EEEEECTTTCCEEEEEECS--------SSCEEEEEECTTS
T ss_pred             hhhhhh-----cCCceEEEEEEecCCCEEEEecCC-----EEEEEECCCCceeEEEecc--------CceEEEEEEccCC
Confidence            333111     11111223333 232455555432     5888998877644322221        1122333343333


Q ss_pred             EEEEEcccCCCcCCeEEEEECCCCCCCCC
Q 010571          310 HLVAFGGYNGKYNNEVFVMRLKPRDIPRP  338 (507)
Q Consensus       310 ~l~v~GG~~~~~~~~v~~~~~~~~~w~~~  338 (507)
                      .++ .|+.+    ..+..+++....+...
T Consensus       279 ~~~-~~~~d----g~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          279 DII-VGSSD----NLVRIFSQEKSRWASE  302 (313)
T ss_dssp             CEE-EEETT----SCEEEEESCGGGCCC-
T ss_pred             CEE-EEeCC----CcEEEEeCCCCceeeh
Confidence            444 46654    4688899877666543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.53  E-value=1.5  Score=40.47  Aligned_cols=232  Identities=8%  Similarity=-0.025  Sum_probs=112.1

Q ss_pred             ccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEE
Q 010571           29 YKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLIL  106 (507)
Q Consensus        29 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~  106 (507)
                      .+-+.+..  ++.||+..-.     ...+++||+.++........                  .+....+..-++++|+.
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~------------------~~~~~i~~~~dG~l~v~   70 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIP-----AKKVCRWDSFTKQVQRVTMD------------------APVSSVALRQSGGYVAT   70 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETT-----TTEEEEEETTTCCEEEEECS------------------SCEEEEEEBTTSSEEEE
T ss_pred             cccCCeEECCCCEEEEEECC-----CCEEEEEECCCCcEEEEeCC------------------CceEEEEECCCCCEEEE
Confidence            33444444  4678887642     35689999998765443321                  11122222225666664


Q ss_pred             cccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCC------CCccCcEEEEEcCCC
Q 010571          107 GGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRS------RKLLNDVHFLDLETM  178 (507)
Q Consensus       107 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~------~~~~~~~~~~d~~t~  178 (507)
                      .        ...++.||+.+++++.+...... .+......+.+  ++.+|+- .....      ......++.+|+. +
T Consensus        71 ~--------~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~-g  139 (297)
T 3g4e_A           71 I--------GTKFCALNWKEQSAVVLATVDND-KKNNRFNDGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPD-H  139 (297)
T ss_dssp             E--------TTEEEEEETTTTEEEEEEECCTT-CSSEEEEEEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTT-S
T ss_pred             E--------CCeEEEEECCCCcEEEEEecCCC-CCCCCCCCEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECC-C
Confidence            3        13599999999998877532111 11111222333  4576653 22111      0123468888875 3


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEEC--CCCcEEeeeecCCCCCCCcceEEEEE--C
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDL--QTNEWSQPEIKGDLVTGRAGHAGITI--D  253 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~--~~~~W~~~~~~~~~p~~r~~~~~~~~--~  253 (507)
                      +...+......|     ..++...+ +.+|+....     .+.|++|++  .++...........+..........+  +
T Consensus       140 ~~~~~~~~~~~p-----ngi~~spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          140 HVKKYFDQVDIS-----NGLDWSLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             CEEEEEEEESBE-----EEEEECTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             CEEEEeeccccc-----cceEEcCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence            443332110111     23444434 357776543     256888886  45554321111111111112223333  5


Q ss_pred             CEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEE--cCceEEEEEccc
Q 010571          254 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII--EGEHHLVAFGGY  317 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~l~v~GG~  317 (507)
                      +++|+.....     ..+.+||+.+.+......++..        ...++.+  ++...|||....
T Consensus       210 G~lwva~~~~-----~~v~~~d~~tG~~~~~i~~p~~--------~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          210 GKLWVACYNG-----GRVIRLDPVTGKRLQTVKLPVD--------KTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             SCEEEEEETT-----TEEEEECTTTCCEEEEEECSSS--------BEEEEEEESGGGCEEEEEEBC
T ss_pred             CCEEEEEcCC-----CEEEEEcCCCceEEEEEECCCC--------CceEEEEeCCCCCEEEEEcCC
Confidence            6788764311     2588999987665433233211        1222333  334578876654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.52  E-value=2.6  Score=43.28  Aligned_cols=126  Identities=16%  Similarity=0.116  Sum_probs=69.6

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG  108 (507)
                      .+.++.++.||+.+..      +.++.+|..|++  |+.-......          ..+.......+.+..+++||+...
T Consensus        62 ~~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~----------~~~~~~~~~~g~a~~~~~v~~~t~  125 (582)
T 1flg_A           62 SQAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDD----------IRPCCDVVNRGAAIYGDKVFFGTL  125 (582)
T ss_dssp             CCCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTT----------CCCSSCSCCCCCEEETTEEEEEET
T ss_pred             eccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcc----------cccccccCCCccEEECCEEEEEeC
Confidence            3446679999998662      249999999874  8764432210          000000112344567899888532


Q ss_pred             cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCc--ccceEEEECC------EEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVAR--GGHSVTLVGS------RLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       109 ~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r--~~~~~~~~~~------~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                             ...++.+|..|++  |+....   .+...  ...+-++.++      .+| +|...........++.||+.|+
T Consensus       126 -------dg~l~AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG  194 (582)
T 1flg_A          126 -------DASVVALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTG  194 (582)
T ss_dssp             -------TTEEEEEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTC
T ss_pred             -------CCEEEEEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCC
Confidence                   2359999998884  876431   11111  1112234455      454 4432111112457999999887


Q ss_pred             c--EEEe
Q 010571          179 T--WDAV  183 (507)
Q Consensus       179 ~--W~~~  183 (507)
                      +  |+..
T Consensus       195 ~~~W~~~  201 (582)
T 1flg_A          195 EEIWMRP  201 (582)
T ss_dssp             CEEEEEE
T ss_pred             CEEeecC
Confidence            5  8654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.52  E-value=1.8  Score=41.32  Aligned_cols=178  Identities=9%  Similarity=0.006  Sum_probs=89.2

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEEC--CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFD--QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~   80 (507)
                      ..+.+||+...........  ......-.+++...  +.+++.|+.+     ..+.++|+.+.....+.....       
T Consensus        96 g~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~-------  161 (383)
T 3ei3_B           96 GDIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVFAKTDS-------  161 (383)
T ss_dssp             SCEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEEECCCC-------
T ss_pred             CeEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEEeccCC-------
Confidence            3456778777766654410  01112222333333  3666666633     458889998766555443211       


Q ss_pred             cCCccCCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCE-EEE
Q 010571           81 DSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSR-LII  156 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~-l~~  156 (507)
                             . ...-.+++. .++.+++.|+.+      ..+.+||+....-..+.   .   ......++.+  ++. +++
T Consensus       162 -------~-~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~---~---h~~~v~~~~~~~~~~~~l~  221 (383)
T 3ei3_B          162 -------W-DYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEK---L---HKAKVTHAEFNPRCDWLMA  221 (383)
T ss_dssp             -------S-SCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEE---C---SSSCEEEEEECSSCTTEEE
T ss_pred             -------C-CCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEec---c---CCCcEEEEEECCCCCCEEE
Confidence                   0 011112222 255666666643      35889998544333332   1   1111222333  233 777


Q ss_pred             EcCcCCCCCccCcEEEEEcCC----CcEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          157 FGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       157 ~GG~~~~~~~~~~~~~~d~~t----~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      .|+.+      ..+.+||+.+    ........     ....-.+++... ++.+++.|+.+     ..+.+||+.+..
T Consensus       222 s~~~d------~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~~  284 (383)
T 3ei3_B          222 TSSVD------ATVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDWS  284 (383)
T ss_dssp             EEETT------SEEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBTT
T ss_pred             EEeCC------CEEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCCc
Confidence            77653      3588899876    33333221     111122333334 55577777654     468899987643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.51  E-value=1.8  Score=41.30  Aligned_cols=186  Identities=9%  Similarity=0.055  Sum_probs=98.7

Q ss_pred             EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC-CCcccceEEEEC--CEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLVG--SRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       102 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~~--~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      .+++.|+.+.      .+.+||+.+.......   ... ....-.+++...  +.+++.|+.+      ..+.++|+.+.
T Consensus        87 ~~l~s~~~dg------~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKGG------DIILWDYDVQNKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBTS------CEEEEETTSTTCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSC
T ss_pred             CEEEEEcCCC------eEEEEeCCCcccceee---ecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCC
Confidence            5777776532      3889999988776654   211 111222333333  3666666643      35889999876


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCE-
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN-  255 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~-  255 (507)
                      ....+....  .......+++...++.+++.|+.+     ..+.+||+.......+..      ......++.+  ++. 
T Consensus       152 ~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~------h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          152 VIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKL------HKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEEECCC--CSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEEC------SSSCEEEEEECSSCTT
T ss_pred             ceEEEeccC--CCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEecc------CCCcEEEEEECCCCCC
Confidence            666554211  111122334444555577777654     468899985444333321      1122233333  334 


Q ss_pred             EEEEeccCCCCCcceEEEEEcCc----CeeEEeccCCCCCCCCCCCCceEEEEEcC-ceEEEEEcccCCCcCCeEEEEEC
Q 010571          256 WYIVGGGDNNNGCQETIVLNMTK----LAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       256 l~v~GG~~~~~~~~d~~~~d~~~----~~W~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~v~~~~~  330 (507)
                      +++.|+.++     .+.+||+.+    ........         .......+.+.. +..+++.|+.+    ..+.++|+
T Consensus       219 ~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~~l~~~~~d----~~i~iwd~  280 (383)
T 3ei3_B          219 LMATSSVDA-----TVKLWDLRNIKDKNSYIAEMP---------HEKPVNAAYFNPTDSTKLLTTDQR----NEIRVYSS  280 (383)
T ss_dssp             EEEEEETTS-----EEEEEEGGGCCSTTCEEEEEE---------CSSCEEEEEECTTTSCEEEEEESS----SEEEEEET
T ss_pred             EEEEEeCCC-----EEEEEeCCCCCcccceEEEec---------CCCceEEEEEcCCCCCEEEEEcCC----CcEEEEEC
Confidence            777776543     478899876    33222111         112233334443 44566667654    46788887


Q ss_pred             CCC
Q 010571          331 KPR  333 (507)
Q Consensus       331 ~~~  333 (507)
                      .+.
T Consensus       281 ~~~  283 (383)
T 3ei3_B          281 YDW  283 (383)
T ss_dssp             TBT
T ss_pred             CCC
Confidence            544

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.46  E-value=1.9  Score=41.21  Aligned_cols=204  Identities=8%  Similarity=0.055  Sum_probs=95.0

Q ss_pred             EEEEEcccCCCCCCcceEEEEECCCCc------EEEeecCCCCCC---CcccceEEEE-----CCEE-EEEcCcCCCCCc
Q 010571          102 KLLILGGHYKKSSDSMIVRFIDLETNL------CGVMETSGKVPV---ARGGHSVTLV-----GSRL-IIFGGEDRSRKL  166 (507)
Q Consensus       102 ~iyv~GG~~~~~~~~~~~~~~d~~t~~------W~~~~~~g~~p~---~r~~~~~~~~-----~~~l-~~~GG~~~~~~~  166 (507)
                      .+++.|+.+.      .+.+||..++.      +..+.   ..+.   ...-.+++..     ++.. ++.|+.+     
T Consensus        82 ~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----  147 (397)
T 1sq9_A           82 CLVATTSFSG------DLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----  147 (397)
T ss_dssp             EEEEEEETTS------CEEEEEEEECTTTCCEEEEEEC---CSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----
T ss_pred             cEEEEEcCCC------CEEEEEccCCcccccccceeec---ccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----
Confidence            7777776532      37788877766      66654   2211   1112223333     3445 6777653     


Q ss_pred             cCcEEEEEcCC------Cc---EE---Eeec--CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          167 LNDVHFLDLET------MT---WD---AVEV--TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       167 ~~~~~~~d~~t------~~---W~---~~~~--~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                       ..+.+||+.+      ..   |.   .+..  .........-.++....++ +++.|+.+     ..+.+||+.+..-.
T Consensus       148 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~  220 (397)
T 1sq9_A          148 -GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPL  220 (397)
T ss_dssp             -SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEE
T ss_pred             -CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCcee
Confidence             3577887765      22   11   1110  0001112223345555667 77777654     46899999876544


Q ss_pred             eeeecCC--CCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEE-eccCC--CCCCCC--CCCCceEEE
Q 010571          233 QPEIKGD--LVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVK--GRNPLA--SEGLSVCSA  303 (507)
Q Consensus       233 ~~~~~~~--~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~--~~~p~~--~~~~~~~~~  303 (507)
                      ..-. +.  .+.......++.+  ++.+++.|+.++  ....+.+||+.+..-.. +....  ...+..  .+......+
T Consensus       221 ~~~~-~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  297 (397)
T 1sq9_A          221 YNFE-SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL  297 (397)
T ss_dssp             EEEE-CCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             EEEe-ccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE
Confidence            3211 10  0000112233333  456777776431  11368899987664322 21100  000000  012233334


Q ss_pred             EEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          304 IIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       304 ~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      .+..+..+++.|+.+    ..+.++|+...
T Consensus       298 ~~~~~~~~l~~~~~d----g~i~iwd~~~~  323 (397)
T 1sq9_A          298 SFNDSGETLCSAGWD----GKLRFWDVKTK  323 (397)
T ss_dssp             EECSSSSEEEEEETT----SEEEEEETTTT
T ss_pred             EECCCCCEEEEEeCC----CeEEEEEcCCC
Confidence            444333455666644    46778887543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.35  E-value=1.3  Score=40.94  Aligned_cols=230  Identities=12%  Similarity=0.078  Sum_probs=107.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.+++.|+.+     ..+.++|..++.-...-....                ..........++++++.|+.+      
T Consensus        24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~s~s~d------   76 (304)
T 2ynn_A           24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSDD------   76 (304)
T ss_dssp             SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS----------------SCEEEEEEEGGGTEEEEEETT------
T ss_pred             CCCEEEEEcCC-----CcEEEEECCCCceeEEeeccC----------------CcEEEEEEeCCCCEEEEECCC------
Confidence            45566666633     458889998875432211110                111111122255566666642      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~  194 (507)
                      ..+.+||+.++.-...-     ........++.+  ++.+++.|+.+      ..+.++|+.+..=......+.   ...
T Consensus        77 ~~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~~~~~~~~~~~h---~~~  142 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDF-----EAHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFEGH---EHF  142 (304)
T ss_dssp             SEEEEEETTTCCEEEEE-----ECCSSCEEEEEECSSSSEEEEEETT------SCEEEEEGGGTTEEEEEECCC---CSC
T ss_pred             CEEEEEECCCCcEEEEE-----eCCCCcEEEEEEcCCCCEEEEECCC------CeEEEEECCCCcchhhhhccc---CCc
Confidence            34888998887543221     001111122223  34566666654      258888886652211111111   111


Q ss_pred             CceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE----CCEEEEEeccCCCCCcc
Q 010571          195 DHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       195 ~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~  269 (507)
                      -.+++..+ ++.+++.|+.+     ..+.+||+.+..-......+   ..+ ....+.+    ++.+++.|+.++     
T Consensus       143 v~~v~~~p~~~~~l~sgs~D-----~~v~iwd~~~~~~~~~~~~~---~~~-~v~~~~~~~~~~~~~l~s~s~D~-----  208 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCLD-----RTVKVWSLGQSTPNFTLTTG---QER-GVNYVDYYPLPDKPYMITASDDL-----  208 (304)
T ss_dssp             EEEEEECTTCTTEEEEEETT-----SEEEEEETTCSSCSEEEECC---CTT-CEEEEEECCSTTCCEEEEEETTS-----
T ss_pred             EEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCccceeccC---CcC-cEEEEEEEEcCCCCEEEEEcCCC-----
Confidence            11222222 44477777765     45888887653211100001   111 1122222    345666666433     


Q ss_pred             eEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          270 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       270 d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      .+.++|+.+..-.  ..+.+.      ......+.+..+..+++.|+.+    ..+.++|+.+.
T Consensus       209 ~i~iWd~~~~~~~--~~~~~h------~~~v~~~~~~p~~~~l~s~s~D----g~i~iWd~~~~  260 (304)
T 2ynn_A          209 TIKIWDYQTKSCV--ATLEGH------MSNVSFAVFHPTLPIIISGSED----GTLKIWNSSTY  260 (304)
T ss_dssp             EEEEEETTTTEEE--EEEECC------SSCEEEEEECSSSSEEEEEETT----SCEEEEETTTC
T ss_pred             eEEEEeCCCCccc--eeeCCC------CCCEEEEEECCCCCEEEEEcCC----CeEEEEECCCC
Confidence            4778888776422  222211      1223333444444466667765    34667776543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.28  Score=52.44  Aligned_cols=108  Identities=13%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--C--CEEEEEcCcCCCCCccCcEEEEEc
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                      ++.+++.||.+      ..+.+||..+.++..+..   +......-.++.+  +  +..++.|+.+      ..+.++|+
T Consensus        20 dg~~latg~~d------g~I~vwd~~~~~~~~~~~---l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSD------KTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETT------TEEEEEEEETTEEEEEEE---ECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEE
T ss_pred             CCCeEEEEECC------CcEEEEecCCCCCcccee---ccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEEC
Confidence            45566666543      247788887777766652   2222222233333  2  5677777754      35899999


Q ss_pred             CCCcEEEeecCCCCCCCCCCceEEEEcC--cEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          176 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       176 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      .++.|..+.....  ....-.++....+  +.+++.|+.+     ..+.+||+.+.
T Consensus        85 ~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~  133 (753)
T 3jro_A           85 ENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKEN  133 (753)
T ss_dssp             ETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSS
T ss_pred             CCCcccccccccC--CCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecC
Confidence            9988766654211  1112222333333  4577777765     46888888765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.33  E-value=1  Score=40.51  Aligned_cols=211  Identities=13%  Similarity=0.047  Sum_probs=100.9

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCC
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      .++||+.......++.    .....-+++++. ++.||+...      ...+++||+.+.....+....           
T Consensus        48 i~~~~~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~~-----------  106 (270)
T 1rwi_B           48 VVKLATGSTGTTVLPF----NGLYQPQGLAVDGAGTVYVTDF------NNRVVTLAAGSNNQTVLPFDG-----------  106 (270)
T ss_dssp             EEEECC-----EECCC----CSCCSCCCEEECTTCCEEEEET------TTEEEEECTTCSCCEECCCCS-----------
T ss_pred             EEEecCCCcccceEee----CCcCCcceeEECCCCCEEEEcC------CCEEEEEeCCCceEeeeecCC-----------
Confidence            4566665554443331    111122344444 456777654      246889998876544332111           


Q ss_pred             ccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcC
Q 010571           84 LLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGED  161 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~  161 (507)
                            ...-+.++.. +++||+....      ...+.+|+..+......... ...   .-..++.. ++.+|+.... 
T Consensus       107 ------~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~~~---~p~~i~~~~~g~l~v~~~~-  169 (270)
T 1rwi_B          107 ------LNYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT-GLN---DPDGVAVDNSGNVYVTDTD-  169 (270)
T ss_dssp             ------CSSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC-SCC---SCCCEEECTTCCEEEEEGG-
T ss_pred             ------cCCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc-cCC---CceeEEEeCCCCEEEEECC-
Confidence                  0111233332 5678887532      23588887766554432211 111   11223332 4577776432 


Q ss_pred             CCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCC
Q 010571          162 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV  241 (507)
Q Consensus       162 ~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p  241 (507)
                           .+.+.+||+.+..-...... ..   ..-.+++...++.+|+.....     +.+.+||+....-....    . 
T Consensus       170 -----~~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~~~~~~~~~----~-  230 (270)
T 1rwi_B          170 -----NNRVVKLEAESNNQVVLPFT-DI---TAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAGSTTSTVLP----F-  230 (270)
T ss_dssp             -----GTEEEEECTTTCCEEECCCS-SC---CSEEEEEECTTCCEEEEETTT-----SCEEEECTTCSCCEECC----C-
T ss_pred             -----CCEEEEEecCCCceEeeccc-CC---CCceEEEECCCCCEEEEECCC-----CcEEEEcCCCCcceeec----c-
Confidence                 34699999887654433211 11   112234444555688765432     46889998765432211    1 


Q ss_pred             CCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcC
Q 010571          242 TGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       242 ~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~  277 (507)
                      ........+.+  ++++|+....+     +.+.+|++.
T Consensus       231 ~~~~~p~~i~~~~~g~l~v~~~~~-----~~v~~~~~~  263 (270)
T 1rwi_B          231 TGLNTPLAVAVDSDRTVYVADRGN-----DRVVKLTSL  263 (270)
T ss_dssp             CSCSCEEEEEECTTCCEEEEEGGG-----TEEEEECCC
T ss_pred             CCCCCceeEEECCCCCEEEEECCC-----CEEEEEcCC
Confidence            11122233444  45777775432     246666643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.30  E-value=3  Score=42.94  Aligned_cols=128  Identities=17%  Similarity=0.130  Sum_probs=71.2

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEEC-CCC--ceeEeeeccccccCccccCCccCCCCCc---cceeeEE--ECCE
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDL-RSL--AWSNLRLETELDADKTEDSGLLEVLPPM---SDHCMVK--WGTK  102 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~-~t~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r---~~~~~~~--~~~~  102 (507)
                      .+-++.++.||+.+..     ...++.||. .++  .|+.-......           ..+..+   ...+.++  .+++
T Consensus        56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~-----------~~~~~~~~~~~~g~av~p~~g~  119 (599)
T 1w6s_A           56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPA-----------ARAVACCDLVNRGLAYWPGDGK  119 (599)
T ss_dssp             SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGG-----------GGGGCSSCSCCCCCEEECCCSS
T ss_pred             eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCcc-----------ccccccccccccceEEEecCCc
Confidence            4556679999998652     346999999 887  48764432210           000011   1123344  4666


Q ss_pred             ----EEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCC-cccceEEEECCEEEEEcCcCCCCCccCcEEEEEc
Q 010571          103 ----LLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       103 ----iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~-r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                          ||+...       ...++.+|..|++  |+....  ..... ....+-++.++.+|+-.+.... .....++.||.
T Consensus       120 ~~~rV~v~t~-------dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~  189 (599)
T 1w6s_A          120 TPALILKTQL-------DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDV  189 (599)
T ss_dssp             SCCEEEEECT-------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEET
T ss_pred             ceeEEEEEcC-------CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEEC
Confidence                777532       2358999998885  875431  11111 1122334568887764322111 12347999999


Q ss_pred             CCCc--EEEee
Q 010571          176 ETMT--WDAVE  184 (507)
Q Consensus       176 ~t~~--W~~~~  184 (507)
                      .|++  |+.-.
T Consensus       190 ~TG~~~W~~~~  200 (599)
T 1w6s_A          190 KTGEQVWRAYA  200 (599)
T ss_dssp             TTCCEEEEEES
T ss_pred             CCCcEEEEEcC
Confidence            8875  87654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.28  E-value=0.075  Score=58.64  Aligned_cols=13  Identities=15%  Similarity=0.665  Sum_probs=5.7

Q ss_pred             CeEeeCCCCCeEEe
Q 010571            5 SWHLELPYDLWVTL   18 (507)
Q Consensus         5 ~~~~d~~~~~W~~~   18 (507)
                      +|+-|+. ..|..-
T Consensus        13 vwv~~~~-~~~~~~   25 (1080)
T 2dfs_A           13 VWIPDPE-EVWKSA   25 (1080)
T ss_dssp             EEEEETT-TEEEEE
T ss_pred             EEEECCC-CceEEE
Confidence            4444432 445543

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.27  E-value=0.52  Score=37.68  Aligned_cols=41  Identities=22%  Similarity=0.431  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhh
Q 010571          449 KLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       449 ~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      +++..+.++..++....    ++..+...++++.+.++++++++.
T Consensus        80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e  124 (129)
T 2fxo_A           80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444333    455555556666666666666543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.26  E-value=1.2  Score=41.61  Aligned_cols=197  Identities=10%  Similarity=-0.003  Sum_probs=94.9

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      ..+|+||+.......+..    +....-++++.. ++.+|+.+... ......+++||+.++....+-....        
T Consensus        66 ~~i~~~d~~~~~~~~~~~----~~~~~~~~i~~~~dg~l~v~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~--------  132 (333)
T 2dg1_A           66 GNIFKINPETKEIKRPFV----SHKANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIEDLS--------  132 (333)
T ss_dssp             CEEEEECTTTCCEEEEEE----CSSSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECSSS--------
T ss_pred             CEEEEEeCCCCcEEEEee----CCCCCcceEEECCCCcEEEEeCCC-CCCCceEEEEeCCCCEEEEEEccCc--------
Confidence            347788888887776542    111222334333 56677765322 1122469999998877653321110        


Q ss_pred             CCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEEcC
Q 010571           82 SGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGG  159 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~GG  159 (507)
                            +..+....++.-++.+|+.............++.||+.+++...+..  ...   ....++.- ++ .+|+...
T Consensus       133 ------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~~~~i~~~~dg~~l~v~~~  201 (333)
T 2dg1_A          133 ------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS---VANGIALSTDEKVLWVTET  201 (333)
T ss_dssp             ------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES---SEEEEEECTTSSEEEEEEG
T ss_pred             ------cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC---cccceEECCCCCEEEEEeC
Confidence                  01111111222257788754321111124569999998877765531  111   11122222 33 5777542


Q ss_pred             cCCCCCccCcEEEEEcCC--CcEEEeecC--CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          160 EDRSRKLLNDVHFLDLET--MTWDAVEVT--QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       160 ~~~~~~~~~~~~~~d~~t--~~W~~~~~~--g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      .      .+.+++||+.+  .........  ...+....-..++...++.+|+.....     +.+.+||+.......+
T Consensus       202 ~------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-----~~v~~~d~~g~~~~~~  269 (333)
T 2dg1_A          202 T------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLVFNKRGYPIGQI  269 (333)
T ss_dssp             G------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEEECTTSCEEEEE
T ss_pred             C------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCC-----CEEEEECCCCCEEEEE
Confidence            2      34689999854  233321100  001100111234444556677765321     4688999865444433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.23  E-value=1.4  Score=43.08  Aligned_cols=147  Identities=10%  Similarity=0.081  Sum_probs=77.1

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~  176 (507)
                      ++.+++.|+.+.      .|.++|+.+..-....   ........-.++.+   ++.+++.|+.+.      .|.++|+.
T Consensus       131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS------CEEEECSSCCSCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETT
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCCceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeecc
Confidence            456777777543      3888888776543332   11111111122333   455666776542      48889998


Q ss_pred             CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE---C
Q 010571          177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---D  253 (507)
Q Consensus       177 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~  253 (507)
                      +...........  ......++....++.+++.|+.+     ..+.++|+....-..      +......-.++.+   +
T Consensus       196 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~~~~------~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          196 GNILRVFASSDT--INIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKELWN------LRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             SCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCBCCC------SBCCSSCEEEEEECTTC
T ss_pred             CCceeEEeccCC--CCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcceeEE------EecccceEEeeeecCCC
Confidence            776655543221  12222344455566677888765     358888876533211      1111112233333   2


Q ss_pred             CEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          254 ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      +.+++.|+.++     .+.+||+.+.
T Consensus       263 ~~~~~s~s~d~-----~v~iwd~~~~  283 (435)
T 4e54_B          263 DWFLATASVDQ-----TVKIWDLRQV  283 (435)
T ss_dssp             SSEEEEEETTS-----BCCEEETTTC
T ss_pred             ceEEEEecCcc-----eeeEEecccc
Confidence            34677776543     3567787654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.18  E-value=0.96  Score=44.40  Aligned_cols=150  Identities=7%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~  115 (507)
                      ++.+++.|+.+     ..+.++|+.++....+.....               ......+++.. ++.+++.|+.+.    
T Consensus       176 ~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~g~~dg----  231 (435)
T 4e54_B          176 NTNQFYASSME-----GTTRLQDFKGNILRVFASSDT---------------INIWFCSLDVSASSRMVVTGDNVG----  231 (435)
T ss_dssp             CTTEEEEECSS-----SCEEEEETTSCEEEEEECCSS---------------CSCCCCCEEEETTTTEEEEECSSS----
T ss_pred             CCCEEEEEeCC-----CEEEEeeccCCceeEEeccCC---------------CCccEEEEEECCCCCEEEEEeCCC----
Confidence            45566666643     347888988776554443221               11112222222 566777776432    


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                        .+.++|..+..-.      .+......-.++.+   ++.+++.|+.+.      .+.+||+.+..-...... .....
T Consensus       232 --~i~~wd~~~~~~~------~~~~h~~~v~~v~~~p~~~~~~~s~s~d~------~v~iwd~~~~~~~~~~~~-~~~h~  296 (435)
T 4e54_B          232 --NVILLNMDGKELW------NLRMHKKKVTHVALNPCCDWFLATASVDQ------TVKIWDLRQVRGKASFLY-SLPHR  296 (435)
T ss_dssp             --BEEEEESSSCBCC------CSBCCSSCEEEEEECTTCSSEEEEEETTS------BCCEEETTTCCSSSCCSB-CCBCS
T ss_pred             --cEeeeccCcceeE------EEecccceEEeeeecCCCceEEEEecCcc------eeeEEecccccccceEEE-eeecc
Confidence              4888887654211      11111111223333   235677776542      467788765432111000 00001


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ..-.+++...++..++.|+.+     ..|.+||+.+..
T Consensus       297 ~~v~~~~~spdg~~l~s~~~D-----~~i~iwd~~~~~  329 (435)
T 4e54_B          297 HPVNAACFSPDGARLLTTDQK-----SEIRVYSASQWD  329 (435)
T ss_dssp             SCEEECCBCTTSSEEEEEESS-----SCEEEEESSSSS
T ss_pred             ccccceeECCCCCeeEEEcCC-----CEEEEEECCCCc
Confidence            111111222455566777754     458888887643

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.17  E-value=0.21  Score=36.96  Aligned_cols=50  Identities=18%  Similarity=0.296  Sum_probs=22.7

Q ss_pred             hhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571          413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       413 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      +.++.++..++.++..++.++..+..++..++.+..+.|.....+.+++.
T Consensus         8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE   57 (97)
T 2eqb_B            8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE   57 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444445555555555554444444444443333333333

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.17  E-value=2.1  Score=40.07  Aligned_cols=196  Identities=14%  Similarity=0.101  Sum_probs=88.8

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCC--CcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEc
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                      ++++++.|+.+.      .+.++|+..  ..+..+..   +........++.+  ++.+++.|+.+.      .+.++|.
T Consensus       118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEE
T ss_pred             CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCCC------eEEEEEC
Confidence            566667776432      377888743  23443331   1111111222333  456677776542      4778888


Q ss_pred             CCCcEEEeecCCCCCCCCCCceEEEEcC--cEEEEEeCCCCCcCCCcEEEEECCC------CcEEeeeecCCCCCCCcce
Q 010571          176 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQT------NEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       176 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~i~GG~~~~~~~~~i~~~d~~~------~~W~~~~~~~~~p~~r~~~  247 (507)
                      .+..|..+......  ...-.++....+  ...++.|+.+     ..+.++|+..      ..|..+..... .....-.
T Consensus       183 ~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~s~D-----~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~  254 (330)
T 2hes_X          183 YDDDWECVAVLNGH--EGTVWSSDFDKTEGVFRLCSGSDD-----STVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVY  254 (330)
T ss_dssp             ETTEEEEEEEECCC--SSCEEEEEECCSSSSCEEEEEETT-----SCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEE
T ss_pred             CCCCeeEEEEccCC--CCcEEEEEecCCCCeeEEEEEeCC-----CeEEEEEecCCCccccceeEEeeeccc-ccccceE
Confidence            77777655432111  111112222223  3355666654     2355565532      23544322111 0111112


Q ss_pred             EEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcC--ceEEEEEcccCCCcCCeE
Q 010571          248 AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG--EHHLVAFGGYNGKYNNEV  325 (507)
Q Consensus       248 ~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~l~v~GG~~~~~~~~v  325 (507)
                      +++...+.+++.||.++     .+.+||..+..|..+.....    .........+....  +..+++.||.++    .+
T Consensus       255 ~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~~~~~~~~~----~h~~~~v~~v~~~~~~~~~~las~s~Dg----~v  321 (330)
T 2hes_X          255 NVAWGFNGLIASVGADG-----VLAVYEEVDGEWKVFAKRAL----CHGVYEINVVKWLELNGKTILATGGDDG----IV  321 (330)
T ss_dssp             EEEECTTSCEEEEETTS-----CEEEEEEETTEEEEEEEESC----TTTTSCEEEEEEC-----CCEEEEETTS----EE
T ss_pred             EEEEcCCCEEEEEeCCC-----EEEEEEcCCCceEEEecccc----ccccceEEEEEEecCCCceEEEEecCCC----cE
Confidence            22222445666666443     37788888888865433211    00111222222322  335677777653    45


Q ss_pred             EEEECC
Q 010571          326 FVMRLK  331 (507)
Q Consensus       326 ~~~~~~  331 (507)
                      ..+++.
T Consensus       322 ~~W~~~  327 (330)
T 2hes_X          322 NFWSLE  327 (330)
T ss_dssp             EEEEC-
T ss_pred             EEEEec
Confidence            666653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=95.16  E-value=1.8  Score=41.28  Aligned_cols=201  Identities=12%  Similarity=0.017  Sum_probs=97.9

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECC-EEEEEcccCCCCCCcceEEEEECCCCcEEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT-KLLILGGHYKKSSDSMIVRFIDLETNLCGV  131 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~  131 (507)
                      ..++++|+.++.-..+.....                ......+..-++ .|++...       ...++.+|+.++.-..
T Consensus        60 ~~l~~~d~~~g~~~~lt~~~~----------------~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           60 WNYYLLDLNTQVATQLTEGRG----------------DNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATLEENV  116 (388)
T ss_dssp             CEEEEEETTTCEEEECCCSSC----------------BCSSSCEECTTSSEEEEEET-------TTEEEEEETTTCCEEE
T ss_pred             ceEEEEeCCCCceEEeeeCCC----------------CCccceEEcCCCCEEEEEeC-------CCeEEEEECCCCccee
Confidence            469999999987766543221                111111222244 4544442       1369999999987666


Q ss_pred             eecCCCCCCCcccceEEEE--CCEEEE-Ec--CcCC-------------CCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          132 METSGKVPVARGGHSVTLV--GSRLII-FG--GEDR-------------SRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       132 ~~~~g~~p~~r~~~~~~~~--~~~l~~-~G--G~~~-------------~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                      +.   ..|...........  ++..++ +-  +.+.             .......++.+|+.+++-..+....    ..
T Consensus       117 ~~---~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~----~~  189 (388)
T 3pe7_A          117 VY---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN----QW  189 (388)
T ss_dssp             EE---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES----SC
T ss_pred             ee---echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC----cc
Confidence            54   33333222122222  232222 11  0000             0112357999999998776664211    11


Q ss_pred             CCceEEEEc-CcEEEEEeCCCC-CcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcc
Q 010571          194 YDHSAALHA-NRYLIVFGGCSH-SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       194 ~~~~~~~~~-~~~l~i~GG~~~-~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~  269 (507)
                       ........ ++..+++..... ......++.+|+.+.....+..   .... .......+  +++.+++..........
T Consensus       190 -~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~  264 (388)
T 3pe7_A          190 -LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEG-ESCTHEFWVPDGSALVYVSYLKGSPDR  264 (388)
T ss_dssp             -EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTT-EEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred             -ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCC-cccccceECCCCCEEEEEecCCCCCcc
Confidence             12333444 454444433221 1234689999998776665421   1111 11112233  45433332222221223


Q ss_pred             eEEEEEcCcCeeEEeccCC
Q 010571          270 ETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       270 d~~~~d~~~~~W~~~~~~~  288 (507)
                      .++++|+.+..-..+...+
T Consensus       265 ~l~~~d~~~g~~~~l~~~~  283 (388)
T 3pe7_A          265 FIYSADPETLENRQLTSMP  283 (388)
T ss_dssp             EEEEECTTTCCEEEEEEEC
T ss_pred             eEEEEecCCCceEEEEcCC
Confidence            5999999988776665543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=95.15  E-value=2  Score=39.67  Aligned_cols=188  Identities=13%  Similarity=0.025  Sum_probs=89.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.-...-..                  .......+.+  ++.+++.|+.+.   
T Consensus        66 ~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~l~sgs~D~---  119 (304)
T 2ynn_A           66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEA------------------HPDYIRSIAVHPTKPYVLSGSDDL---  119 (304)
T ss_dssp             GGTEEEEEETT-----SEEEEEETTTCCEEEEEEC------------------CSSCEEEEEECSSSSEEEEEETTS---
T ss_pred             CCCEEEEECCC-----CEEEEEECCCCcEEEEEeC------------------CCCcEEEEEEcCCCCEEEEECCCC---
Confidence            44556666633     4588899888753221110                  1111222222  455666666432   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~  191 (507)
                         .+.++|..++.=.....    ......-.++.+   ++.+++.|+.+      ..+.++|+.+..-......+.   
T Consensus       120 ---~v~lWd~~~~~~~~~~~----~~h~~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~~---  183 (304)
T 2ynn_A          120 ---TVKLWNWENNWALEQTF----EGHEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQ---  183 (304)
T ss_dssp             ---CEEEEEGGGTTEEEEEE----CCCCSCEEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECCC---
T ss_pred             ---eEEEEECCCCcchhhhh----cccCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccCC---
Confidence               37788876652111111    111111123333   34677777754      358888886543211111111   


Q ss_pred             CCCCceEEEE---cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCC
Q 010571          192 PRYDHSAALH---ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNN  266 (507)
Q Consensus       192 ~r~~~~~~~~---~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~  266 (507)
                      .+ ....+.+   .++.+++.|+.+     ..+.++|+.+..-...- .+    ....-..+.+  ++.+++.|+.++  
T Consensus       184 ~~-~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~~~~-~~----h~~~v~~~~~~p~~~~l~s~s~Dg--  250 (304)
T 2ynn_A          184 ER-GVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVATL-EG----HMSNVSFAVFHPTLPIIISGSEDG--  250 (304)
T ss_dssp             TT-CEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEEEEE-EC----CSSCEEEEEECSSSSEEEEEETTS--
T ss_pred             cC-cEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccceee-CC----CCCCEEEEEECCCCCEEEEEcCCC--
Confidence            11 1112222   244466666654     46888998876533211 11    1111223333  446777777544  


Q ss_pred             CcceEEEEEcCcCeeE
Q 010571          267 GCQETIVLNMTKLAWS  282 (507)
Q Consensus       267 ~~~d~~~~d~~~~~W~  282 (507)
                         .+.++|+.+..-.
T Consensus       251 ---~i~iWd~~~~~~~  263 (304)
T 2ynn_A          251 ---TLKIWNSSTYKVE  263 (304)
T ss_dssp             ---CEEEEETTTCCEE
T ss_pred             ---eEEEEECCCCcee
Confidence               3778888776543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.14  E-value=0.047  Score=61.37  Aligned_cols=6  Identities=33%  Similarity=0.617  Sum_probs=2.4

Q ss_pred             EEEEEc
Q 010571          102 KLLILG  107 (507)
Q Consensus       102 ~iyv~G  107 (507)
                      .|+|.|
T Consensus       171 ~i~isG  176 (1184)
T 1i84_S          171 SILCTG  176 (1184)
T ss_dssp             EEECCC
T ss_pred             EEEEec
Confidence            344443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.12  E-value=2.8  Score=41.20  Aligned_cols=112  Identities=13%  Similarity=0.093  Sum_probs=56.5

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCccc-ceEEE-EC---CEEEEEcCcCCCCCccCcEEEEE
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG-HSVTL-VG---SRLIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~-~~~~~-~~---~~l~~~GG~~~~~~~~~~~~~~d  174 (507)
                      ++..++.|+.      ...++.++..+........ ..+...... .+++. -+   +.+++.|+.+      ..+.+||
T Consensus       160 ~~~~l~~~~~------~g~v~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd  226 (450)
T 2vdu_B          160 DDTTVIIADK------FGDVYSIDINSIPEEKFTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISH  226 (450)
T ss_dssp             TSSEEEEEET------TSEEEEEETTSCCCSSCCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEE
T ss_pred             CCCEEEEEeC------CCcEEEEecCCcccccccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEE
Confidence            5556666653      2348888887654321000 011101111 12222 25   6677777754      3588999


Q ss_pred             cCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          175 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       175 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      +.+.+.......+.   ...-.+++.. ++.+++.|+.+     ..+.+||+.++....
T Consensus       227 ~~~~~~~~~~~~~h---~~~v~~~~~s-d~~~l~s~~~d-----~~v~vwd~~~~~~~~  276 (450)
T 2vdu_B          227 YPQCFIVDKWLFGH---KHFVSSICCG-KDYLLLSAGGD-----DKIFAWDWKTGKNLS  276 (450)
T ss_dssp             ESCTTCEEEECCCC---SSCEEEEEEC-STTEEEEEESS-----SEEEEEETTTCCEEE
T ss_pred             CCCCceeeeeecCC---CCceEEEEEC-CCCEEEEEeCC-----CeEEEEECCCCcEee
Confidence            88776543321111   1111222223 44466677644     468899998876433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.09  E-value=0.26  Score=37.43  Aligned_cols=24  Identities=33%  Similarity=0.410  Sum_probs=9.3

Q ss_pred             hHhhhhhhhhhHHHHHHHHHHHHH
Q 010571          439 QLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       439 ~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      ++...+.+..+.+..+..++++++
T Consensus        31 ~~k~~e~~~~~~E~Ei~sL~kk~~   54 (101)
T 3u1c_A           31 DKKAAEERSKQLEDDIVQLEKQLR   54 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            333333333334444444444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=95.06  E-value=0.21  Score=37.66  Aligned_cols=34  Identities=9%  Similarity=0.230  Sum_probs=18.4

Q ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhc
Q 010571          391 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNS  424 (507)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  424 (507)
                      +..|+.+....++.+.....+..++++++...+.
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~   59 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI   59 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555544333

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=95.03  E-value=3.7  Score=42.97  Aligned_cols=189  Identities=12%  Similarity=0.122  Sum_probs=91.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.++|+.++.-...-...                  .....++.+  ++..++.|+.+.   
T Consensus       441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~h------------------~~~v~~~~~s~~~~~l~s~s~D~---  494 (694)
T 3dm0_A          441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFVGH------------------TKDVLSVAFSLDNRQIVSASRDR---  494 (694)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTTEEEEEEECC------------------SSCEEEEEECTTSSCEEEEETTS---
T ss_pred             CCCEEEEEeCC-----CcEEEEECCCCcceeEEeCC------------------CCCEEEEEEeCCCCEEEEEeCCC---
Confidence            45566666643     45888998887543221111                  111122222  455666666432   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC--C--EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG--S--RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP  190 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~--~--~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p  190 (507)
                         .+.++|.....-..+..  .....+....++.+.  +  .+++.|+.+      ..+.++|+.+.+-...-. +   
T Consensus       495 ---~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~-~---  559 (694)
T 3dm0_A          495 ---TIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTLA-G---  559 (694)
T ss_dssp             ---CEEEECTTSCEEEEECS--STTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEEC-C---
T ss_pred             ---EEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEEc-C---
Confidence               37778875543222221  111112222333332  1  356666643      358899998766543321 1   


Q ss_pred             CCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcce
Q 010571          191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE  270 (507)
Q Consensus       191 ~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d  270 (507)
                      ....-.+++...++.+++.||.+     ..|.++|+.+..-...     .......++++...+..+++++.+     ..
T Consensus       560 h~~~v~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~-----~~  624 (694)
T 3dm0_A          560 HTGYVSTVAVSPDGSLCASGGKD-----GVVLLWDLAEGKKLYS-----LEANSVIHALCFSPNRYWLCAATE-----HG  624 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETT-----SBCEEEETTTTEEEEC-----CBCSSCEEEEEECSSSSEEEEEET-----TE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCceEEE-----ecCCCcEEEEEEcCCCcEEEEEcC-----CC
Confidence            11112233344566677777765     4588899887753321     111112223333333333444422     24


Q ss_pred             EEEEEcCcCee
Q 010571          271 TIVLNMTKLAW  281 (507)
Q Consensus       271 ~~~~d~~~~~W  281 (507)
                      +.++|+.+..-
T Consensus       625 i~iwd~~~~~~  635 (694)
T 3dm0_A          625 IKIWDLESKSI  635 (694)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCCC
Confidence            78888877654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=95.02  E-value=2.5  Score=40.26  Aligned_cols=117  Identities=12%  Similarity=0.020  Sum_probs=56.5

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCC--CCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g--~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~  228 (507)
                      ++ +++.|+.+      ..+.+||+.+.+-...-...  ..+....-.+++...++.+++.|+.++  ....+.+||+.+
T Consensus       197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~  267 (397)
T 1sq9_A          197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEF  267 (397)
T ss_dssp             TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTT
T ss_pred             Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCC
Confidence            35 66666643      36999999877644332110  000011122333334555666666431  013588999887


Q ss_pred             CcEEeeeecCCCCC--------CCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCee
Q 010571          229 NEWSQPEIKGDLVT--------GRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       229 ~~W~~~~~~~~~p~--------~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  281 (507)
                      ..-...-.....+.        .......+.+  ++.+++.|+.++     .+.+||+.+..-
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~  325 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG-----KLRFWDVKTKER  325 (397)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEE
T ss_pred             CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC-----eEEEEEcCCCce
Confidence            65332111000000        1122223333  456777776433     578899877643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=95.02  E-value=3  Score=40.98  Aligned_cols=186  Identities=11%  Similarity=0.049  Sum_probs=94.8

Q ss_pred             EECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcC
Q 010571           98 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus        98 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~  176 (507)
                      ..++.+++.|+.+.      .+.+||..+..-....   ..... .-.+++.. ++..++.|+.+      ..+.+||+.
T Consensus       277 ~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~---~~~~~-~v~~~~~~~~~~~l~sg~~d------g~i~vwd~~  340 (464)
T 3v7d_B          277 SGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL---SGHTD-RIYSTIYDHERKRCISASMD------TTIRIWDLE  340 (464)
T ss_dssp             EEETTEEEEEETTS------CEEEEETTTTEEEEEE---CCCSS-CEEEEEEETTTTEEEEEETT------SCEEEEETT
T ss_pred             cCCCCEEEEEeCCC------eEEEEECCCCcEEEEe---cCCCC-CEEEEEEcCCCCEEEEEeCC------CcEEEEECC
Confidence            33455666666432      4889999887543332   11111 11222222 34566666643      359999998


Q ss_pred             CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEE
Q 010571          177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  256 (507)
Q Consensus       177 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  256 (507)
                      +++-...-. +    .......+.+.+. .++.|+.+     ..+.+||+.+..-.....    ........+...++.+
T Consensus       341 ~~~~~~~~~-~----h~~~v~~~~~~~~-~l~s~s~d-----g~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          341 NGELMYTLQ-G----HTALVGLLRLSDK-FLVSAAAD-----GSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNI  405 (464)
T ss_dssp             TTEEEEEEC-C----CSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSE
T ss_pred             CCcEEEEEe-C----CCCcEEEEEEcCC-EEEEEeCC-----CcEEEEECCCCceeeeec----CCCCccEEEEEeCCCE
Confidence            776433221 1    1122234445455 66666654     458899988765332211    1112222344557777


Q ss_pred             EEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEEC
Q 010571          257 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~  330 (507)
                      ++.|+ +     ..+.+||+.+..-......+       .......+..+ +..+++.|+.++  ..-++.+|.
T Consensus       406 l~~~~-d-----g~i~iwd~~~g~~~~~~~~~-------~~~~v~~v~~~-~~~l~~~~~~~g--~~~i~~ldf  463 (464)
T 3v7d_B          406 LVSGS-E-----NQFNIYNLRSGKLVHANILK-------DADQIWSVNFK-GKTLVAAVEKDG--QSFLEILDF  463 (464)
T ss_dssp             EEEEE-T-----TEEEEEETTTCCEEESCTTT-------TCSEEEEEEEE-TTEEEEEEEETT--EEEEEEEEC
T ss_pred             EEEec-C-----CeEEEEECCCCcEEehhhcc-------CCCcEEEEEec-CCEEEEEEEeCC--eEEEEEeec
Confidence            77776 2     25889999887644321111       12223333444 346666666543  234555553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.01  E-value=2.2  Score=39.58  Aligned_cols=146  Identities=15%  Similarity=0.102  Sum_probs=70.7

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      +.+++.|+.+      ..+.+||..+.......   ....  ....++.+  ++.+++.|+.+      ..+.+||+.+.
T Consensus       185 ~~~~~s~~~d------~~i~i~d~~~~~~~~~~---~~h~--~~v~~~~~s~~~~~l~s~s~D------g~i~iwd~~~~  247 (340)
T 4aow_A          185 NPIIVSCGWD------KLVKVWNLANCKLKTNH---IGHT--GYLNTVTVSPDGSLCASGGKD------GQAMLWDLNEG  247 (340)
T ss_dssp             SCEEEEEETT------SCEEEEETTTTEEEEEE---CCCS--SCEEEEEECTTSSEEEEEETT------CEEEEEETTTT
T ss_pred             CcEEEEEcCC------CEEEEEECCCCceeeEe---cCCC--CcEEEEEECCCCCEEEEEeCC------CeEEEEEeccC
Confidence            3455555542      23888998887654432   1111  11122233  45677777754      35888998876


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCC----cceEEEEE--
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR----AGHAGITI--  252 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r----~~~~~~~~--  252 (507)
                      .-......     .....+++...++ .++.++.+     ..+.+||+.+..-.............    ..-.++.+  
T Consensus       248 ~~~~~~~~-----~~~v~~~~~~~~~-~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  316 (340)
T 4aow_A          248 KHLYTLDG-----GDIINALCFSPNR-YWLCAATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA  316 (340)
T ss_dssp             EEEEEEEC-----SSCEEEEEECSSS-SEEEEEET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT
T ss_pred             ceeeeecC-----CceEEeeecCCCC-ceeeccCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC
Confidence            54333211     1111222333444 45555543     45888888776543211101111111    11123333  


Q ss_pred             CCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          253 DENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       253 ~~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      +++.++.||.++     .+.++|++++
T Consensus       317 dg~~l~sgs~Dg-----~v~iW~~~tG  338 (340)
T 4aow_A          317 DGQTLFAGYTDN-----LVRVWQVTIG  338 (340)
T ss_dssp             TSSEEEEEETTS-----CEEEEEEEC-
T ss_pred             CCCEEEEEeCCC-----EEEEEeCCCc
Confidence            456777777554     3677777664

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=95.00  E-value=0.56  Score=44.80  Aligned_cols=200  Identities=11%  Similarity=0.069  Sum_probs=85.2

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG-HSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~-~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++++++.|+......-...+++|+..+..-...... .......+ .+++.. ++.++ .++.+      ..|.++|+.+
T Consensus        53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~l-~~s~d------g~v~lWd~~~  124 (357)
T 4g56_B           53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGIL-VASDS------GAVELWEILE  124 (357)
T ss_dssp             SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEEE-EEETT------SCEEEC----
T ss_pred             CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCEE-EEECC------CEEEEeeccc
Confidence            778888877543322234688887665421100000 00001111 123333 34544 45432      2588888876


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--C-C
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--D-E  254 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~-~  254 (507)
                      ++-..............-.+++...++..++.|+.+     ..+.+||+.+..-...-     ......-.++.+  + +
T Consensus       125 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~s~~~~  194 (357)
T 4g56_B          125 KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVKVWDLSQKAVLKSY-----NAHSSEVNCVAACPGKD  194 (357)
T ss_dssp             ----CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTCS
T ss_pred             cceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEEE-----cCCCCCEEEEEEccCCC
Confidence            543211100000001111233334566577777765     35888999887654421     111111122333  2 3


Q ss_pred             EEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEE-cCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          255 NWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       255 ~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      .+++.||.++     .+.++|+.+..-......      .........+.+ +.+..+++.|+.+    ..+.++|+.+
T Consensus       195 ~~~~s~~~dg-----~v~~wd~~~~~~~~~~~~------~~~~~~v~~v~~sp~~~~~la~g~~d----~~i~~wd~~~  258 (357)
T 4g56_B          195 TIFLSCGEDG-----RILLWDTRKPKPATRIDF------CASDTIPTSVTWHPEKDDTFACGDET----GNVSLVNIKN  258 (357)
T ss_dssp             SCEEEEETTS-----CEEECCTTSSSCBCBCCC------TTCCSCEEEEEECTTSTTEEEEEESS----SCEEEEESSC
T ss_pred             ceeeeeccCC-----ceEEEECCCCceeeeeee------ccccccccchhhhhcccceEEEeecc----cceeEEECCC
Confidence            4677776543     367788766542211111      111112223333 3344577777754    3466677643

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.94  E-value=0.36  Score=39.85  Aligned_cols=74  Identities=24%  Similarity=0.276  Sum_probs=39.7

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhh-------hhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC-------FKLEAQIAELQKMLESSQ----TIENEVQILRQQKS  479 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-------~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~  479 (507)
                      ...+|+..+..++.....+++++..++.++++++...       .+++..+.-+..++....    +.+.+..+++..+.
T Consensus        49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~  128 (168)
T 3o0z_A           49 LNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN  128 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555566666666777777776665333       233334444444433333    34445566666666


Q ss_pred             HHHHH
Q 010571          480 AFEQE  484 (507)
Q Consensus       480 ~~~~~  484 (507)
                      .+|++
T Consensus       129 ~lEKe  133 (168)
T 3o0z_A          129 HSEKE  133 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=94.93  E-value=2.2  Score=39.09  Aligned_cols=265  Identities=15%  Similarity=0.109  Sum_probs=115.0

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCc-cccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcc
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSP-RYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT   79 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~   79 (507)
                      |+-+.++|+.+++-..+-.   .... ..-.+++.. ++.+++.|+.+     ..+.++|..+++-......        
T Consensus        44 D~tV~iWd~~tg~~~~~~~---~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~~~~~~~--------  107 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTS--------  107 (318)
T ss_dssp             TTEEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEEC--------
T ss_pred             CCEEEEEECCCCCEEEEEE---ecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCceeEEEecC--------
Confidence            4445677877776654431   1111 111122222 55666777643     4588899988764333221        


Q ss_pred             ccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcC
Q 010571           80 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGG  159 (507)
Q Consensus        80 ~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG  159 (507)
                                ......+....+.+++.|+...      .+..++..+.........+.  ............+..++.|+
T Consensus       108 ----------h~~~~~~~~~~~~~l~s~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~  169 (318)
T 4ggc_A          108 ----------HSARVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGH--SQEVCGLRWAPDGRHLASGG  169 (318)
T ss_dssp             ----------CSSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEE
T ss_pred             ----------ccceEEEeecCCCEEEEEecCC------ceEeeecCCCceeEEEEcCc--cCceEEEEEcCCCCEEEEEe
Confidence                      1122233444555666655422      35555555543332221111  11111111112345556665


Q ss_pred             cCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEE--cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeec
Q 010571          160 EDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIK  237 (507)
Q Consensus       160 ~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~  237 (507)
                      .+      ..+.++|+.+.+-..............-.+....  ....+++.+|...    ..+.++|.....-..... 
T Consensus       170 ~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~i~lwd~~~~~~~~~~~-  238 (318)
T 4ggc_A          170 ND------NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVD-  238 (318)
T ss_dssp             TT------SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT----CEEEEEETTTCCEEEEEE-
T ss_pred             cC------cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC----CEEEEEeccccccccccc-
Confidence            43      2488888876431110000000000001111221  2343444444332    357778877765544321 


Q ss_pred             CCCCCCCcceEEEEE-CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcc
Q 010571          238 GDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG  316 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG  316 (507)
                        .. .......... ++.+++.+|....    .+.+||..+..-  +..+.+.      ......+.+..+..+++.||
T Consensus       239 --~~-~~v~~~~~~~~~~~~~~~sg~~d~----~i~iwd~~~~~~--~~~l~gH------~~~V~~l~~spdg~~l~S~s  303 (318)
T 4ggc_A          239 --AH-SQVCSILWSPHYKELISGHGFAQN----QLVIWKYPTMAK--VAELKGH------TSRVLSLTMSPDGATVASAA  303 (318)
T ss_dssp             --CS-SCEEEEEEETTTTEEEEEECTTTC----CEEEEETTTCCE--EEEECCC------SSCEEEEEECTTSSCEEEEE
T ss_pred             --ce-eeeeeeeecccccceEEEEEcCCC----EEEEEECCCCcE--EEEEcCC------CCCEEEEEEcCCCCEEEEEe
Confidence              11 1111112222 3445555453322    478899876542  2233221      12233344444445666777


Q ss_pred             cCCCcCCeEEEEEC
Q 010571          317 YNGKYNNEVFVMRL  330 (507)
Q Consensus       317 ~~~~~~~~v~~~~~  330 (507)
                      .++    .+.++|+
T Consensus       304 ~D~----~v~iWd~  313 (318)
T 4ggc_A          304 ADE----TLRLWRC  313 (318)
T ss_dssp             TTT----EEEEECC
T ss_pred             cCC----eEEEEEC
Confidence            653    4555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=94.90  E-value=3.9  Score=41.79  Aligned_cols=202  Identities=11%  Similarity=0.065  Sum_probs=101.0

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-C-CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecC-CCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT-QTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~-g~~p~~  192 (507)
                      ...+++.|..+.....+.   .++.++.-|....- + .++|+...      ..|.+.++|+.+++-...-.. |..|.+
T Consensus       319 ~g~v~~vd~~~~~~~~v~---~i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Php  389 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTT---EISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHP  389 (567)
T ss_dssp             TTEEEEEETTCSSEEEEE---EEECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred             CCeEEEEecCCCccceee---eeeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence            446888998877654444   23344444443332 2 34555432      256799999999876555445 555655


Q ss_pred             CCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCc-----EEeeeecCCCCCCCcceEEEEEC-CEEEEEeccCCC
Q 010571          193 RYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE-----WSQPEIKGDLVTGRAGHAGITID-ENWYIVGGGDNN  265 (507)
Q Consensus       193 r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~-----W~~~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~  265 (507)
                      -.+... ...+ +.+|+.+-.+.    +.+.++|..+..     |+.+....... ....+..+.-+ ..+||---.+.+
T Consensus       390 g~g~~~-~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~  463 (567)
T 1qks_A          390 GRGANF-VHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFPALG-GGSLFIKTHPNSQYLYVDATLNPE  463 (567)
T ss_dssp             TTCEEE-EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTCSEEEEECTTCSS
T ss_pred             ccceee-ECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEecCC-CCCEEEEeCCCCCeEEEecCCCCC
Confidence            333222 3333 56776653321    468888877632     76654321111 11111111112 367775322211


Q ss_pred             C-CcceEEEEEcCcC-------eeEEeccC--CCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571          266 N-GCQETIVLNMTKL-------AWSILTSV--KGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       266 ~-~~~d~~~~d~~~~-------~W~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                      . ..+.+.+||+.+.       .+..++..  ... +.. ...........++..+++.-+......+.+.++|..+.+
T Consensus       464 ~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~  540 (567)
T 1qks_A          464 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI-TEG-QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE  540 (567)
T ss_dssp             HHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC-CSS-CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             cccCceEEEEECCcccccccCCCcEEecccccccc-CCC-CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence            1 1346889998766       23444310  000 000 012222334444567777533222246789999987754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=94.88  E-value=2.7  Score=39.82  Aligned_cols=135  Identities=14%  Similarity=0.072  Sum_probs=68.4

Q ss_pred             cEEEEEcCCCcEEEeecCCCCCCCCCCceEEEE--cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcc
Q 010571          169 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG  246 (507)
Q Consensus       169 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~  246 (507)
                      .+.++|+.+++-...-. +.   ...-.++...  .++.+++.|+.+     ..+.+||+.+......-     ......
T Consensus       177 ~v~lwd~~~~~~~~~~~-~h---~~~v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~~~~-----~~h~~~  242 (354)
T 2pbi_B          177 TCALWDVESGQLLQSFH-GH---GADVLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCVQAF-----ETHESD  242 (354)
T ss_dssp             EEEEEETTTCCEEEEEE-CC---SSCEEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEEEEE-----CCCSSC
T ss_pred             cEEEEeCCCCeEEEEEc-CC---CCCeEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe-----cCCCCC
Confidence            58889998876543321 11   0001112221  133577777765     45889999887654421     111111


Q ss_pred             eEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCe
Q 010571          247 HAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNE  324 (507)
Q Consensus       247 ~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~  324 (507)
                      -.++.+  ++.+++.|+.++     .+.+||+.+..-..+-...      ........+.+..+..+++.|+.+    ..
T Consensus       243 v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~~------~~~~~~~~~~~s~~g~~l~~g~~d----~~  307 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSKE------SIIFGASSVDFSLSGRLLFAGYND----YT  307 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCT------TCCSCEEEEEECTTSSEEEEEETT----SC
T ss_pred             eEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCC------CcccceeEEEEeCCCCEEEEEECC----Cc
Confidence            223333  456777777543     3778888776432211111      011122333444444566667654    45


Q ss_pred             EEEEECCC
Q 010571          325 VFVMRLKP  332 (507)
Q Consensus       325 v~~~~~~~  332 (507)
                      +.++|+.+
T Consensus       308 i~vwd~~~  315 (354)
T 2pbi_B          308 INVWDVLK  315 (354)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            77888744

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=94.85  E-value=1.2  Score=41.63  Aligned_cols=236  Identities=12%  Similarity=0.082  Sum_probs=108.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--C---CEEEEEcccCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--G---TKLLILGGHYK  111 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~---~~iyv~GG~~~  111 (507)
                      +..+++.|+...  ....+.+||..++..........                 .....++.+  +   +.+++.|+.+.
T Consensus        30 ~~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           30 SAKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEK-----------------AKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             SSEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEE-----------------SSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             CceEEEecCccC--CCcEEEEEeCCCCcccceeeecc-----------------cCcEEEEEEcCCCCCCceEEEecCCC
Confidence            346666776411  12458899998887655433221                 111122222  2   46666666432


Q ss_pred             CCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEE-------ECCEEEEEcCcCCCCCccCcEEEEEcCCCc--E
Q 010571          112 KSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTL-------VGSRLIIFGGEDRSRKLLNDVHFLDLETMT--W  180 (507)
Q Consensus       112 ~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~-------~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W  180 (507)
                            .+.+||..+..  -..+.   ....+  -.++..       -++..++.|+.+      ..+.+||+.+..  .
T Consensus        91 ------~i~iwd~~~~~~~~~~~~---~~~~~--v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A           91 ------NLHIWNLEAPEMPVYSVK---GHKEI--INAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPV  153 (357)
T ss_dssp             ------CEEEECTTSCSSCSEEEC---CCSSC--EEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCS
T ss_pred             ------eEEEEeCCCCCccEEEEE---ecccc--eEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcc
Confidence                  38888887764  12221   11111  111111       234566666653      358899987764  3


Q ss_pred             EEeecCCCCCCCCCCceEE----EEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE----
Q 010571          181 DAVEVTQTPPAPRYDHSAA----LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI----  252 (507)
Q Consensus       181 ~~~~~~g~~p~~r~~~~~~----~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~----  252 (507)
                      ..+... .....+...+++    ...++.+++.|+.+     ..+.+||+.+..-.....     .... ..++.+    
T Consensus       154 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~-----~~~~-v~~~~~~~~~  221 (357)
T 3i2n_A          154 ANMEPV-QGENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETN-----IKNG-VCSLEFDRKD  221 (357)
T ss_dssp             EEECCC-TTSCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEE-----CSSC-EEEEEESCSS
T ss_pred             eecccc-CCCCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecC-----CCCc-eEEEEcCCCC
Confidence            333211 000011111222    11355567777654     468999998876533211     1111 122333    


Q ss_pred             -CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEE-cCceEEEEEcccCCCcCCeEEEEEC
Q 010571          253 -DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       253 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~v~~~~~  330 (507)
                       ++..++.|+.++     .+.+||+.+..-  +..+... ....+......+.+ +++..+++.|+.++    .+.++|+
T Consensus       222 ~~~~~l~~~~~dg-----~i~i~d~~~~~~--~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iwd~  289 (357)
T 3i2n_A          222 ISMNKLVATSLEG-----KFHVFDMRTQHP--TKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAG----GLHLWKY  289 (357)
T ss_dssp             SSCCEEEEEESTT-----EEEEEEEEEEET--TTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTS----EEEEEEE
T ss_pred             CCCCEEEEECCCC-----eEEEEeCcCCCc--ccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCC----cEEEeec
Confidence             456777776443     467777655321  1100000 00011122233333 44444777787653    5666676


Q ss_pred             CC
Q 010571          331 KP  332 (507)
Q Consensus       331 ~~  332 (507)
                      ..
T Consensus       290 ~~  291 (357)
T 3i2n_A          290 EY  291 (357)
T ss_dssp             EC
T ss_pred             CC
Confidence            43

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.85  E-value=2.9  Score=40.02  Aligned_cols=184  Identities=11%  Similarity=0.109  Sum_probs=89.8

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCccc-ceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCC--cEEEeecCCCCCC
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGG-HSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPA  191 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~-~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~  191 (507)
                      .+.+||+.++.-...... ..+..... ...+.+   ++.+++.|+.+.      .+.++|+...  .-..+.  +   .
T Consensus       181 ~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~--~---h  248 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYH--G---H  248 (380)
T ss_dssp             CEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEEC--C---C
T ss_pred             cEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEEC--C---c
Confidence            488899988865443211 12222111 122223   457888887643      5888888632  122221  1   1


Q ss_pred             CCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCC--CCCcceEEEEE--CCEEEEEeccCCCCC
Q 010571          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLV--TGRAGHAGITI--DENWYIVGGGDNNNG  267 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p--~~r~~~~~~~~--~~~l~v~GG~~~~~~  267 (507)
                      ...-.+++...++..++.|+.+     ..+.+||+.++.-...-......  .......++.+  ++.+++.|+.++   
T Consensus       249 ~~~v~~v~~~p~~~~l~s~s~D-----~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---  320 (380)
T 3iz6_a          249 EGDINSVKFFPDGQRFGTGSDD-----GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG---  320 (380)
T ss_dssp             SSCCCEEEECTTSSEEEEECSS-----SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS---
T ss_pred             CCCeEEEEEecCCCeEEEEcCC-----CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC---
Confidence            1112234444566677777765     35889999887544321111100  00111122333  567777776443   


Q ss_pred             cceEEEEEcCcCeeEE-eccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          268 CQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       268 ~~d~~~~d~~~~~W~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                        .+.++|..+..-.. +..+..    ...+ ....+.+..+..+++.||.++    .+.++++..
T Consensus       321 --~i~vwd~~~~~~~~~~~~~~~----~h~~-~v~~l~~s~dg~~l~sgs~D~----~i~iW~~~~  375 (380)
T 3iz6_a          321 --DCYVWDTLLAEMVLNLGTLQN----SHEG-RISCLGLSSDGSALCTGSWDK----NLKIWAFSG  375 (380)
T ss_dssp             --CEEEEETTTCCEEEEECCSCS----SCCC-CCCEEEECSSSSEEEEECTTS----CEEEEECCS
T ss_pred             --CEEEEECCCCceEEEEecccC----CCCC-ceEEEEECCCCCEEEEeeCCC----CEEEEecCC
Confidence              47889987654332 221111    1111 122333433445667777653    455666543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=94.84  E-value=2.6  Score=42.82  Aligned_cols=201  Identities=10%  Similarity=0.034  Sum_probs=93.2

Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                      ...++++|..+..-..+.   ..+.++.-+..+.- ++ ++|+.+..      .+.+.++|+.+++-...-..+..|.+-
T Consensus       301 ~g~i~vvd~~~~~~l~~~---~i~~~~~~~~~~~spdg~~l~va~~~------~~~v~v~D~~tg~l~~~i~~g~~ph~g  371 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVT---SIGAAPFLHDGGWDSSHRYFMTAANN------SNKVAVIDSKDRRLSALVDVGKTPHPG  371 (543)
T ss_dssp             TTEEEEEECTTSSSCEEE---EEECCSSCCCEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred             CCeEEEEEecCCCcceeE---EeccCcCccCceECCCCCEEEEEecC------CCeEEEEECCCCeEEEeeccCCCCCCC
Confidence            346899998775422211   11112222222222 33 45554322      456899999998866654444445443


Q ss_pred             CCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCC-----cEEeeeecCCCCCCCcceEEEEECC-EEEEEeccCCCC
Q 010571          194 YDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTN-----EWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNN  266 (507)
Q Consensus       194 ~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~-----~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~  266 (507)
                      .+... ...+ +.+|+.+..+.    +.|.++|..+.     .|+.+..... +.....+..+.-++ .||+-.-.+.+.
T Consensus       372 ~g~~~-~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~~~v~~l~~-~g~~~~~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          372 RGANF-VHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAWKKVAELQG-QGGGSLFIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             TCEEE-EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEEC-SCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred             CCccc-CCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcCeEEEEEEc-CCCCceEEEcCCCCCcEEEecCCCCCc
Confidence            22222 2333 66777765332    46888888762     2655433111 11111111111233 455432111110


Q ss_pred             -CcceEEEEEcCcCeeE--EeccC--CCCCCCCCCCCceEEE-EEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571          267 -GCQETIVLNMTKLAWS--ILTSV--KGRNPLASEGLSVCSA-IIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       267 -~~~d~~~~d~~~~~W~--~~~~~--~~~~p~~~~~~~~~~~-~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                       ....+.+||+.+..-.  .++.-  .+. +  ..+.....+ ..+++..|++.-+......+.+.++|..+.+
T Consensus       446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~-~--~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          446 RISQSVAVFDLKNLDAKYQVLPIAEWADL-G--EGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCC-C--SSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             ccCceEEEEECCCCCCCeEEeechhhccc-C--CCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence             1346899999877532  22110  000 0  112222233 3344456665422111235788899987764

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=94.84  E-value=0.27  Score=48.11  Aligned_cols=98  Identities=9%  Similarity=0.073  Sum_probs=42.1

Q ss_pred             hhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHH--HHHhHHH
Q 010571          389 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK--MLESSQT  466 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~--~~~~~~~  466 (507)
                      +++..++...++++..+.+.........+.++.++..+++.++++......+.+..+++++++..+.+...  .-..++.
T Consensus        93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~  172 (464)
T 1m1j_B           93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV  172 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            33333444444444444433333333333444444444444444444444343333333333333332221  1122334


Q ss_pred             HHHHHHHHHHhHHHHHHHHH
Q 010571          467 IENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       467 ~e~e~~~~~~~~~~~~~~~~  486 (507)
                      |+..++.+.++++.|+..+.
T Consensus       173 L~~~~~~l~~ki~~l~~~~~  192 (464)
T 1m1j_B          173 LRAVIDSLHKKIQKLENAIA  192 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555566666666555544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.83  E-value=2.2  Score=45.40  Aligned_cols=109  Identities=13%  Similarity=0.018  Sum_probs=62.0

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++.|+++||...      -+.+||+.++++...... ..+. .....+...  ++.|++- ..       +.+.+||+.+
T Consensus       482 ~g~lWi~~~t~~------Gl~~~d~~~~~~~~~~~~-~~~~-~~~~~~i~~d~~g~lWig-t~-------~Gl~~~~~~~  545 (758)
T 3ott_A          482 EGNVWVLLYNNK------GIDKINPRTREVTKLFAD-ELTG-EKSPNYLLCDEDGLLWVG-FH-------GGVMRINPKD  545 (758)
T ss_dssp             TSCEEEEETTCS------SEEEEETTTTEEEEECTT-TSCG-GGCEEEEEECTTSCEEEE-ET-------TEEEEECC--
T ss_pred             CCCEEEEccCCC------CcEEEeCCCCceEEecCC-CcCC-CcccceEEECCCCCEEEE-ec-------CceEEEecCC
Confidence            577888666432      288999999999887421 1111 111222333  3577753 21       2489999988


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      .++..... ..+|. ...++++. .++.|++...       +-+.+||+.+......
T Consensus       546 ~~~~~~~~-~gl~~-~~i~~i~~-~~g~lWi~t~-------~Gl~~~~~~~~~~~~~  592 (758)
T 3ott_A          546 ESQQSISF-GSFSN-NEILSMTC-VKNSIWVSTT-------NGLWIIDRKTMDARQQ  592 (758)
T ss_dssp             CCCCBCCC-CC----CCEEEEEE-ETTEEEEEES-------SCEEEEETTTCCEEEC
T ss_pred             CceEEecc-cCCCc-cceEEEEE-CCCCEEEECC-------CCeEEEcCCCceeEEe
Confidence            87765532 22332 22233333 4677887553       4589999999887753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=94.83  E-value=1.4  Score=41.10  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=33.3

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeE
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSN   67 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~   67 (507)
                      +..++++|+.+.+......   .+.....+.++..  ++.+|+.+..     ...+++||+.++....
T Consensus        20 ~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B           20 PNNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCCCCcEEE
Confidence            3457889998876653321   1210012334433  4467777642     2469999999886543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=94.80  E-value=1.5  Score=41.22  Aligned_cols=106  Identities=17%  Similarity=0.108  Sum_probs=57.7

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      +.+++.|+.+      ..+.+||+.++.-.....     .......++.+   ++.+++.|+.+      ..+.+||+.+
T Consensus        85 ~~~l~~~~~d------g~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~  147 (366)
T 3k26_A           85 HPLLAVAGSR------GIIRIINPITMQCIKHYV-----GHGNAINELKFHPRDPNLLLSVSKD------HALRLWNIQT  147 (366)
T ss_dssp             CEEEEEEETT------CEEEEECTTTCCEEEEEE-----SCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTT
T ss_pred             CCEEEEecCC------CEEEEEEchhceEeeeec-----CCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEEeec
Confidence            5677777753      248899988775433221     11111222223   45677777653      3599999988


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      .+-...-.. .......-.+++...++..++.|+.+     ..+.+||+.+.
T Consensus       148 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~  193 (366)
T 3k26_A          148 DTLVAIFGG-VEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSK  193 (366)
T ss_dssp             TEEEEEECS-TTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSH
T ss_pred             CeEEEEecc-cccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCC
Confidence            765443210 01111222233333455567777754     46888988764

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.79  E-value=0.36  Score=36.69  Aligned_cols=17  Identities=29%  Similarity=0.303  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHhHHHHH
Q 010571          466 TIENEVQILRQQKSAFE  482 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~  482 (507)
                      +.+.+..-|.++++-+|
T Consensus        83 ~AE~evasLnRriqllE   99 (101)
T 3u59_A           83 DAEAEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            45556666666666554

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=94.73  E-value=0.74  Score=35.20  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             cchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010571          425 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSV  491 (507)
Q Consensus       425 ~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~~~~~~  491 (507)
                      ....+++++...+...+.++.++.++|+.--.+++..+...    .++.+..+.-++..-|+.|+++-..+
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L  106 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESL  106 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666677777777777777777777776655544    67777777777777888887754433

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=94.67  E-value=6.8  Score=44.11  Aligned_cols=191  Identities=11%  Similarity=0.095  Sum_probs=93.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE----CCEEEEEcccCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~  112 (507)
                      ++.+++.|+.+     ..+.++|..++.....-..                  ......++.+    ++.+++.|+.+  
T Consensus       668 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~l~sg~~d--  722 (1249)
T 3sfz_A          668 DDSYIATCSAD-----KKVKIWDSATGKLVHTYDE------------------HSEQVNCCHFTNKSNHLLLATGSND--  722 (1249)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTCCEEEEEEC------------------CSSCEEEEEECSSSSCCEEEEEETT--
T ss_pred             CCCEEEEEeCC-----CeEEEEECCCCceEEEEcC------------------CCCcEEEEEEecCCCceEEEEEeCC--
Confidence            45566666632     4588999988764332211                  1112223333    23355555532  


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCC-
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-  189 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~-  189 (507)
                          ..+.+||..++.......   .  ......++.+  ++..++.|+.+      ..+..+|+.+..-......... 
T Consensus       723 ----~~v~vwd~~~~~~~~~~~---~--h~~~v~~~~~sp~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          723 ----FFLKLWDLNQKECRNTMF---G--HTNSVNHCRFSPDDELLASCSAD------GTLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             ----SCEEEEETTSSSEEEEEC---C--CSSCEEEEEECSSTTEEEEEESS------SEEEEEEGGGTEEEEEEECCCCC
T ss_pred             ----CeEEEEECCCcchhheec---C--CCCCEEEEEEecCCCEEEEEECC------CeEEEEeCCCCcccceecccccc
Confidence                238889998886544321   1  1111122222  44566666643      3588888876643322111000 


Q ss_pred             -----C---CCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEec
Q 010571          190 -----P---APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG  261 (507)
Q Consensus       190 -----p---~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG  261 (507)
                           +   ......+++...++..+++++.      +.+.+||+.+.........+.  ..........-++.++++|+
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~------~~v~~~d~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~  859 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAK------NKVLLFDIHTSGLLAEIHTGH--HSTIQYCDFSPYDHLAVIAL  859 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEET------TEEEEEETTTCCEEEEEECSS--SSCCCEEEECSSTTEEEEEC
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEcC------CcEEEEEecCCCceeEEcCCC--CCceEEEEEcCCCCEEEEEe
Confidence                 0   0011112223344545555542      578999998877554321111  11111122222567777776


Q ss_pred             cCCCCCcceEEEEEcCcCe
Q 010571          262 GDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       262 ~~~~~~~~d~~~~d~~~~~  280 (507)
                      .++     .+.++|..+..
T Consensus       860 ~dg-----~v~vwd~~~~~  873 (1249)
T 3sfz_A          860 SQY-----CVELWNIDSRL  873 (1249)
T ss_dssp             SSS-----CEEEEETTTTE
T ss_pred             CCC-----eEEEEEcCCCc
Confidence            543     37788887654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=94.63  E-value=2.5  Score=38.34  Aligned_cols=224  Identities=10%  Similarity=0.003  Sum_probs=116.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~  115 (507)
                      ++.||+....     ...+.+||+. +....+.....                ...-++++.. ++.||+....      
T Consensus        30 ~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~~----------------~~~~~~i~~~~~g~l~v~~~~------   81 (300)
T 2qc5_A           30 DGKVWFTQHK-----ANKISSLDQS-GRIKEFEVPTP----------------DAKVMCLIVSSLGDIWFTENG------   81 (300)
T ss_dssp             TSCEEEEETT-----TTEEEEECTT-SCEEEEECSST----------------TCCEEEEEECTTSCEEEEETT------
T ss_pred             CCCEEEEcCC-----CCeEEEECCC-CceEEEECCCC----------------CCcceeEEECCCCCEEEEecC------
Confidence            5678886531     3568899988 77665442110                1112233332 5678886431      


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                      ...+..||+. +++.....    |........+.+  ++.+|+....      .+.+..||+. ++........   ...
T Consensus        82 ~~~v~~~d~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~  146 (300)
T 2qc5_A           82 ANKIGKLSKK-GGFTEYPL----PQPDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGS  146 (300)
T ss_dssp             TTEEEEECTT-SCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTC
T ss_pred             CCeEEEECCC-CCeEEecC----CCCCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCC
Confidence            2358999988 77765542    211122223333  4678776432      2368999987 6666543211   112


Q ss_pred             CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceE
Q 010571          194 YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQET  271 (507)
Q Consensus       194 ~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~  271 (507)
                      .-+.++...++.+|+.....     +.+++||+ ++....+..    +........+.+  ++.+|+....     ...+
T Consensus       147 ~~~~i~~d~~g~l~v~~~~~-----~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i  211 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQN-----NSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIM-----GNKI  211 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTT-----TEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETT-----TTEE
T ss_pred             CceeEEECCCCCEEEEecCC-----CeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccC-----CCEE
Confidence            22334444556677755321     46899998 666665422    111122233334  4578776431     1258


Q ss_pred             EEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEEC
Q 010571          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRL  330 (507)
Q Consensus       272 ~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~  330 (507)
                      ++||+ +..+..+.....       ......+.++.++.|++....    .+.+..|++
T Consensus       212 ~~~~~-~g~~~~~~~~~~-------~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~  258 (300)
T 2qc5_A          212 GRITT-TGEISEYDIPTP-------NARPHAITAGKNSEIWFTEWG----ANQIGRITN  258 (300)
T ss_dssp             EEECT-TCCEEEEECSST-------TCCEEEEEECSTTCEEEEETT----TTEEEEECT
T ss_pred             EEEcC-CCcEEEEECCCC-------CCCceEEEECCCCCEEEeccC----CCeEEEECC
Confidence            88988 555554422110       112333445444457765421    356777777

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.54  E-value=0.31  Score=49.09  Aligned_cols=13  Identities=38%  Similarity=0.580  Sum_probs=6.0

Q ss_pred             cEEEEEcCCCcEE
Q 010571          169 DVHFLDLETMTWD  181 (507)
Q Consensus       169 ~~~~~d~~t~~W~  181 (507)
                      .+..+|+..+...
T Consensus       145 ~L~~L~Ls~N~l~  157 (487)
T 3oja_A          145 RVQYLDLKLNEID  157 (487)
T ss_dssp             SEEEEECTTSCCC
T ss_pred             CCCEEECCCCCCC
Confidence            3455555444433

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.49  E-value=1.6  Score=42.06  Aligned_cols=202  Identities=9%  Similarity=0.001  Sum_probs=96.2

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecC--CCCCCCcccceEEEE--CC-EEEEEcCcCCCCCccCcEEEEE
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~--g~~p~~r~~~~~~~~--~~-~l~~~GG~~~~~~~~~~~~~~d  174 (507)
                      ++.+++.|+.+      ..+.+||..++........  ..+........++.+  ++ .+++.|+.+      ..+.++|
T Consensus        93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd  160 (402)
T 2aq5_A           93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWD  160 (402)
T ss_dssp             CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEE
T ss_pred             CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEE
Confidence            56677777643      2488888887643110000  000001111122223  22 467777653      3599999


Q ss_pred             cCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECC
Q 010571          175 LETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE  254 (507)
Q Consensus       175 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~  254 (507)
                      +.+.+....-.  .......-.+++...++.+++.|+.+     ..+.+||+.+..-...-..+ ....+....+..-++
T Consensus       161 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  232 (402)
T 2aq5_A          161 VGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRP-HEGTRPVHAVFVSEG  232 (402)
T ss_dssp             TTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECS-SCSSSCCEEEECSTT
T ss_pred             CCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccC-CCCCcceEEEEcCCC
Confidence            98876544321  01111222233444455567777654     46899999887644321001 111112222222356


Q ss_pred             EEEEEeccCCCCCcceEEEEEcCcCee-EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          255 NWYIVGGGDNNNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       255 ~l~v~GG~~~~~~~~d~~~~d~~~~~W-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      .+++.|....  .-..+.+||+.+..- ..+..+..      .....+....+++..|++.|+.+    ..+.+|++...
T Consensus       233 ~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~g~~d----g~i~i~d~~~~  300 (402)
T 2aq5_A          233 KILTTGFSRM--SERQVALWDTKHLEEPLSLQELDT------SSGVLLPFFDPDTNIVYLCGKGD----SSIRYFEITSE  300 (402)
T ss_dssp             EEEEEEECTT--CCEEEEEEETTBCSSCSEEEECCC------CSSCEEEEEETTTTEEEEEETTC----SCEEEEEECSS
T ss_pred             cEEEEeccCC--CCceEEEEcCccccCCceEEeccC------CCceeEEEEcCCCCEEEEEEcCC----CeEEEEEecCC
Confidence            7777662111  123688899876431 01111111      11123333445556777777544    35666776543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.44  E-value=3.1  Score=38.64  Aligned_cols=250  Identities=12%  Similarity=0.032  Sum_probs=119.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE-ECCEEEEEcccCCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~  115 (507)
                      ++.||+.+..     ...+++||+.++....+....                 ...-++++. -++++|+.......  .
T Consensus        55 ~g~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~-----------------~~~~~~i~~~~dg~l~v~~~~~~~--~  110 (333)
T 2dg1_A           55 QGQLFLLDVF-----EGNIFKINPETKEIKRPFVSH-----------------KANPAAIKIHKDGRLFVCYLGDFK--S  110 (333)
T ss_dssp             TSCEEEEETT-----TCEEEEECTTTCCEEEEEECS-----------------SSSEEEEEECTTSCEEEEECTTSS--S
T ss_pred             CCCEEEEECC-----CCEEEEEeCCCCcEEEEeeCC-----------------CCCcceEEECCCCcEEEEeCCCCC--C
Confidence            5668777652     246899999998877654211                 111223332 25778876532211  1


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                      ...+++||+.++....+..  ..... .....+.+  ++.+|+.............++.||+.+.+...+...  .   .
T Consensus       111 ~~~i~~~d~~~~~~~~~~~--~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~  182 (333)
T 2dg1_A          111 TGGIFAATENGDNLQDIIE--DLSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I---S  182 (333)
T ss_dssp             CCEEEEECTTSCSCEEEEC--SSSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E---S
T ss_pred             CceEEEEeCCCCEEEEEEc--cCccC-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C---C
Confidence            2469999999887664321  11111 11222233  457777543221111235699999887777655321  1   1


Q ss_pred             CCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCC--CcEEeeee--cCCCCCCCcceEEEEE--CCEEEEEeccCCCC
Q 010571          194 YDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEI--KGDLVTGRAGHAGITI--DENWYIVGGGDNNN  266 (507)
Q Consensus       194 ~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~--~~W~~~~~--~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~  266 (507)
                      ....++...++ .+|+....     .+.+++||+.+  .....+..  ....+.. .....+.+  ++++|+....+   
T Consensus       183 ~~~~i~~~~dg~~l~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~---  253 (333)
T 2dg1_A          183 VANGIALSTDEKVLWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQ---  253 (333)
T ss_dssp             SEEEEEECTTSSEEEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETT---
T ss_pred             cccceEECCCCCEEEEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCC---
Confidence            11233333444 57775432     25689999854  23332110  0001111 12222333  46777764321   


Q ss_pred             CcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCC-CcCCeEEEEECC
Q 010571          267 GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG-KYNNEVFVMRLK  331 (507)
Q Consensus       267 ~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~-~~~~~v~~~~~~  331 (507)
                        ..+.+||++...-..+.. +.. ...........+..++...||+.+...+ .....+|.+++.
T Consensus       254 --~~v~~~d~~g~~~~~~~~-~~~-~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          254 --GRVLVFNKRGYPIGQILI-PGR-DEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             --TEEEEECTTSCEEEEEEC-TTG-GGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             --CEEEEECCCCCEEEEEEc-CCC-ccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence              258889986554444322 110 0000001122222234356776543221 123467888864

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=94.42  E-value=0.73  Score=36.81  Aligned_cols=16  Identities=25%  Similarity=0.252  Sum_probs=6.5

Q ss_pred             HHHHHHhHHHHHHHHH
Q 010571          471 VQILRQQKSAFEQEME  486 (507)
Q Consensus       471 ~~~~~~~~~~~~~~~~  486 (507)
                      ...+...+..++++..
T Consensus        99 ~~~L~~~kkkle~e~~  114 (129)
T 2fxo_A           99 NAELTAKKRKLEDECS  114 (129)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333334444444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.40  E-value=0.8  Score=37.78  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHH
Q 010571          394 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM  460 (507)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~  460 (507)
                      |+....++...+........++++...++.......+....+.++.+..++.....+++++..++.+
T Consensus        11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~   77 (168)
T 3o0z_A           11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI   77 (168)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444455444444444444433333333333333333333344444333333

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=94.39  E-value=3  Score=38.22  Aligned_cols=106  Identities=11%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE----CCEEEEEcccCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~  112 (507)
                      ++.+++.|+.+     ..+.+||+.+.....+.....                .......+.+    ++.+++.|+.+  
T Consensus        20 ~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~g----------------H~~~V~~v~~s~~~~g~~l~s~s~D--   76 (297)
T 2pm7_B           20 YGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTG----------------HEGPVWRVDWAHPKFGTILASCSYD--   76 (297)
T ss_dssp             TSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECC----------------CSSCEEEEEECCGGGCSEEEEEETT--
T ss_pred             CCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEcc----------------ccCCeEEEEecCCCcCCEEEEEcCC--
Confidence            45666677643     457888886544333322211                1111222332    25667777643  


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEEC----CEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~----~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                          ..+.++|+.++.|..+..   .........++.+.    +.+++.|+.+      ..+.++|+.+.
T Consensus        77 ----~~v~iWd~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~  133 (297)
T 2pm7_B           77 ----GKVMIWKEENGRWSQIAV---HAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKEN  133 (297)
T ss_dssp             ----TEEEEEEBSSSCBCCCEE---ECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSS
T ss_pred             ----CEEEEEEcCCCceEEEEE---eecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCC
Confidence                248888888876654431   11111112223331    4566666653      35777777654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=94.39  E-value=4.2  Score=39.86  Aligned_cols=160  Identities=8%  Similarity=-0.018  Sum_probs=78.8

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcE
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW  180 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W  180 (507)
                      +.+++.|+.+      ..+.+||+.++........+  ........+.. ++.+++.|+.+      ..+.+||+.+++.
T Consensus       210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~  274 (450)
T 2vdu_B          210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN  274 (450)
T ss_dssp             CEEEEEEETT------SCEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred             CcEEEEEcCC------CcEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence            7788887753      24888888877544331111  11111111222 56666777643      3689999988775


Q ss_pred             EEeecCCC----------C-----------CCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEEC--CC-CcEEeeee
Q 010571          181 DAVEVTQT----------P-----------PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL--QT-NEWSQPEI  236 (507)
Q Consensus       181 ~~~~~~g~----------~-----------p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~--~~-~~W~~~~~  236 (507)
                      ...-..+.          .           +.......++...++.++++++...    +.+.+|++  .+ ..+..+..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d----~~i~iw~~~~~~~~~l~~~~~  350 (450)
T 2vdu_B          275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT----KCIIILEMSEKQKGDLALKQI  350 (450)
T ss_dssp             EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC----SEEEEEEECSSSTTCEEEEEE
T ss_pred             eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC----CeEEEEEeccCCCCceeeccE
Confidence            43321110          0           0011111223333443444444221    56888888  33 34444322


Q ss_pred             cCCCCCCCcceEEEEECCEEEEEeccCCC----CCcceEEEEEcCcCeeE
Q 010571          237 KGDLVTGRAGHAGITIDENWYIVGGGDNN----NGCQETIVLNMTKLAWS  282 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~----~~~~d~~~~d~~~~~W~  282 (507)
                      .   +......+++...+.+++..+....    ...-.+|.++..++.|.
T Consensus       351 ~---~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          351 I---TFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             E---ECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             e---ccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence            1   1111222344445677776654321    22336777888877775

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.39  E-value=3.6  Score=39.51  Aligned_cols=110  Identities=14%  Similarity=0.044  Sum_probs=58.2

Q ss_pred             EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       102 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~  179 (507)
                      .+++.|+.+.      .+.+||..++.....-.   .........++.+  ++.+++.|+.+      ..+.+||+.+.+
T Consensus       145 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~  209 (402)
T 2aq5_A          145 NVLLSAGCDN------VILVWDVGTGAAVLTLG---PDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGT  209 (402)
T ss_dssp             TEEEEEETTS------CEEEEETTTTEEEEEEC---TTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTE
T ss_pred             CEEEEEcCCC------EEEEEECCCCCccEEEe---cCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCc
Confidence            5777776432      38899999886543320   0111111222333  45666666643      369999998876


Q ss_pred             EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      -...-..+.  .......++...++.+++.|...  ..-..+.+||+.+..
T Consensus       210 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~~--~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          210 VVAEKDRPH--EGTRPVHAVFVSEGKILTTGFSR--MSERQVALWDTKHLE  256 (402)
T ss_dssp             EEEEEECSS--CSSSCCEEEECSTTEEEEEEECT--TCCEEEEEEETTBCS
T ss_pred             eeeeeccCC--CCCcceEEEEcCCCcEEEEeccC--CCCceEEEEcCcccc
Confidence            443321111  11112344555677677776211  012568899987643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=94.34  E-value=3.4  Score=38.63  Aligned_cols=236  Identities=12%  Similarity=-0.006  Sum_probs=118.8

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCC--cE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETN--LC  129 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W  129 (507)
                      +.++++|+.+++.........                -..-+.++. -+++||+....      ...+.+||+...  .-
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~----------------~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~  126 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNL----------------FYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPL  126 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTT----------------CSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCS
T ss_pred             CcEEEEECCCCeEEeccCCCc----------------cCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEE
Confidence            369999998887644322110                011122222 25778887642      345899998765  22


Q ss_pred             EEeecC---CCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCC----CCCCC-CceE
Q 010571          130 GVMETS---GKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP----PAPRY-DHSA  198 (507)
Q Consensus       130 ~~~~~~---g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~----p~~r~-~~~~  198 (507)
                      ..+...   |..+........+++   ++.||+..+..     .+.|.+||.....-..+...+..    +.... -+.+
T Consensus       127 ~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gi  201 (329)
T 3fvz_A          127 LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSL  201 (329)
T ss_dssp             EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEE
T ss_pred             EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEE
Confidence            333211   111111222333344   46899987531     34689999654433333222211    11111 2334


Q ss_pred             EEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCC--CCCcceEEEEE
Q 010571          199 ALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN--NNGCQETIVLN  275 (507)
Q Consensus       199 ~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~--~~~~~d~~~~d  275 (507)
                      ++..+ +.||+....+     +.|.+||+.++.....-.  .........+.+...+.+++..|...  +.....+.++|
T Consensus       202 a~d~~~g~l~v~d~~~-----~~I~~~~~~~G~~~~~~~--~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~  274 (329)
T 3fvz_A          202 ALVPHLDQLCVADREN-----GRIQCFKTDTKEFVREIK--HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN  274 (329)
T ss_dssp             EEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEC--CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEE
T ss_pred             EEECCCCEEEEEECCC-----CEEEEEECCCCcEEEEEe--ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEE
Confidence            44445 7788876543     579999998776654311  11111112233333466666666321  12234688999


Q ss_pred             cCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          276 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       276 ~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                      +.+......-...     .........+.++.+..|||....    .+.|+.|++.
T Consensus       275 ~~~g~~~~~~~~~-----~~~~~~p~~ia~~~dG~lyvad~~----~~~I~~~~~~  321 (329)
T 3fvz_A          275 FSSGEIIDVFKPV-----RKHFDMPHDIVASEDGTVYIGDAH----TNTVWKFTLT  321 (329)
T ss_dssp             TTTCCEEEEECCS-----SSCCSSEEEEEECTTSEEEEEESS----SCCEEEEEEE
T ss_pred             cCCCeEEEEEcCC-----CCccCCeeEEEECCCCCEEEEECC----CCEEEEEeCC
Confidence            8877655431110     011112333445555578887653    3578888874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.32  E-value=3.4  Score=38.57  Aligned_cols=191  Identities=9%  Similarity=0.063  Sum_probs=91.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeE---EECCEEEEEcccCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMV---KWGTKLLILGGHYKKS  113 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~---~~~~~iyv~GG~~~~~  113 (507)
                      ++.+++.|+.+     ..+.+||..++....+....                 .. -.+++   ..++.+++.|+.+   
T Consensus        97 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~-----------------~~-v~~~~~~~~~~~~~l~~~~~d---  150 (368)
T 3mmy_A           97 DGSKVFTASCD-----KTAKMWDLSSNQAIQIAQHD-----------------AP-VKTIHWIKAPNYSCVMTGSWD---  150 (368)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTTEEEEEEECS-----------------SC-EEEEEEEECSSCEEEEEEETT---
T ss_pred             CCCEEEEEcCC-----CcEEEEEcCCCCceeecccc-----------------Cc-eEEEEEEeCCCCCEEEEccCC---
Confidence            45555666533     46889999988765543221                 11 11222   2256777777653   


Q ss_pred             CCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCC
Q 010571          114 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR  193 (507)
Q Consensus       114 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r  193 (507)
                         ..+.+||+.++.-....     .......+.....+.+++.++       .+.+..||+....-......  .+...
T Consensus       151 ---g~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~--~~~~~  213 (368)
T 3mmy_A          151 ---KTLKFWDTRSSNPMMVL-----QLPERCYCADVIYPMAVVATA-------ERGLIVYQLENQPSEFRRIE--SPLKH  213 (368)
T ss_dssp             ---SEEEEECSSCSSCSEEE-----ECSSCEEEEEEETTEEEEEEG-------GGCEEEEECSSSCEEEEECC--CSCSS
T ss_pred             ---CcEEEEECCCCcEEEEE-----ecCCCceEEEecCCeeEEEeC-------CCcEEEEEeccccchhhhcc--ccccC
Confidence               34888998776432221     111122333444555554433       23588888876543222211  11111


Q ss_pred             CCceEEEEcC----cEEEEEeCCCCCcCCCcEEEEECCCCc-------EEeeeecCCCCCCCc----ceEEEEE--CCEE
Q 010571          194 YDHSAALHAN----RYLIVFGGCSHSIFFNDLHVLDLQTNE-------WSQPEIKGDLVTGRA----GHAGITI--DENW  256 (507)
Q Consensus       194 ~~~~~~~~~~----~~l~i~GG~~~~~~~~~i~~~d~~~~~-------W~~~~~~~~~p~~r~----~~~~~~~--~~~l  256 (507)
                      .........+    ...++.|+.+     ..+.+||+....       +..... ........    ...++.+  ++.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~  287 (368)
T 3mmy_A          214 QHRCVAIFKDKQNKPTGFALGSIE-----GRVAIHYINPPNPAKDNFTFKCHRS-NGTNTSAPQDIYAVNGIAFHPVHGT  287 (368)
T ss_dssp             CEEEEEEEECTTSCEEEEEEEETT-----SEEEEEESSCSCHHHHSEEEECSEE-C----CCCEEECCEEEEEECTTTCC
T ss_pred             CCceEEEcccCCCCCCeEEEecCC-----CcEEEEecCCCCccccceeeeeeec-ccccccccccccceEEEEEecCCCE
Confidence            1122222211    1236666654     457788876652       111100 00000001    1223333  4567


Q ss_pred             EEEeccCCCCCcceEEEEEcCcCee
Q 010571          257 YIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~~~W  281 (507)
                      ++.|+.++     .+.+||+.+..-
T Consensus       288 l~s~~~dg-----~i~iwd~~~~~~  307 (368)
T 3mmy_A          288 LATVGSDG-----RFSFWDKDARTK  307 (368)
T ss_dssp             EEEEETTS-----CEEEEETTTTEE
T ss_pred             EEEEccCC-----eEEEEECCCCcE
Confidence            77777543     378999887643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=94.29  E-value=5.4  Score=40.77  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=60.2

Q ss_pred             CCCeEeeC-C--CCCeEEeccCCCCCC--c---cccceEEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeecc
Q 010571            3 SGSWHLEL-P--YDLWVTLPVSGARPS--P---RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLET   72 (507)
Q Consensus         3 ~~~~~~d~-~--~~~W~~~~~~~~~p~--~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~   72 (507)
                      ..+++||. .  ...|+.-........  +   ....+.++.++.||+...      ...++.+|..|+  .|+.-....
T Consensus        73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l~alD~~tG~~~W~~~~~~~  146 (571)
T 2ad6_A           73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHLLALDAKTGKINWEVEVCDP  146 (571)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCCG
T ss_pred             CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCEEEEEECCCCCEEEEecCCCC
Confidence            34789998 5  446876442110000  0   112345667888888754      246999999988  476532111


Q ss_pred             ccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEee
Q 010571           73 ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVME  133 (507)
Q Consensus        73 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~  133 (507)
                      .              .......+-+..++.||+..+.... .....++.||+.|++  |+.-.
T Consensus       147 ~--------------~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          147 K--------------VGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             G--------------GTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEES
T ss_pred             C--------------ccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEcc
Confidence            0              0001222334568888875432211 113469999999874  76543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=94.26  E-value=3.7  Score=42.55  Aligned_cols=156  Identities=8%  Similarity=-0.041  Sum_probs=77.0

Q ss_pred             ceEEEEECC--C-CcEEEeecCCCCCC---CcccceEEEE-CCEEEEEcCcCC----CCCccCcEEEEEcCC------Cc
Q 010571          117 MIVRFIDLE--T-NLCGVMETSGKVPV---ARGGHSVTLV-GSRLIIFGGEDR----SRKLLNDVHFLDLET------MT  179 (507)
Q Consensus       117 ~~~~~~d~~--t-~~W~~~~~~g~~p~---~r~~~~~~~~-~~~l~~~GG~~~----~~~~~~~~~~~d~~t------~~  179 (507)
                      ..+|.++..  + +.-..+.   ..+.   .......+.- +++.+++...+.    .......++.+|+.+      ..
T Consensus       102 ~~l~~~~~~~~g~~~~~~l~---~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  178 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRPLT---PVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA  178 (662)
T ss_dssp             CCEEEECTTSTTCCCCEECS---CCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG
T ss_pred             CeEEEEcCCCCCCCCCEecc---CCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc
Confidence            358999887  4 6555554   2221   1111122222 444344433321    111235799999988      66


Q ss_pred             EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCc---CCCcEEEEECC-CC---cEEeeeecCCCCCCCcceEEEEE
Q 010571          180 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQ-TN---EWSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       180 W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~---~~~~i~~~d~~-~~---~W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                      ...+...+    ...........+++.+++.......   ...+|+++|+. ++   ....+...     .........+
T Consensus       179 ~~~l~~~~----~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-----~~~~~~~~~~  249 (662)
T 3azo_A          179 VRELSDDA----HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-----PEEAIAQAEW  249 (662)
T ss_dssp             SEESSCSC----SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE-----TTBCEEEEEE
T ss_pred             eeEEEecC----CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC-----CCceEcceEE
Confidence            55543011    1111223333455444444432211   23579999998 56   34443211     0111122233


Q ss_pred             --CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccC
Q 010571          253 --DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       253 --~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~  287 (507)
                        ++++++.+..++   ...+|++|+.+..+..+...
T Consensus       250 spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~  283 (662)
T 3azo_A          250 APDGSLIVATDRTG---WWNLHRVDPATGAATQLCRR  283 (662)
T ss_dssp             CTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCC
T ss_pred             CCCCeEEEEECCCC---CeEEEEEECCCCceeecccc
Confidence              567766654332   34799999988888877543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=94.25  E-value=1.5  Score=46.06  Aligned_cols=222  Identities=9%  Similarity=-0.004  Sum_probs=108.4

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCC
Q 010571           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKS  113 (507)
Q Consensus        36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~  113 (507)
                      .|+.+|.+--.. +.....+|+.+...+.|+.+-.....           . .........+.+  +++.++|.-.....
T Consensus        78 dG~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~d~~~~-----------a-~~~~~~~~~~~~SPDG~~la~~~~~~G~  144 (695)
T 2bkl_A           78 RNGRFFYVRTHK-DKEKAILYWRQGESGQEKVLLDPNGW-----------S-KDGTVSLGTWAVSWDGKKVAFAQKPNAA  144 (695)
T ss_dssp             ETTEEEEEEECT-TCSSCEEEEEESTTSCCEEEECGGGS-----------S-SSSCEEEEEEEECTTSSEEEEEEEETTC
T ss_pred             ECCEEEEEEEcC-CCeEEEEEEEcCCCCCcEEEEchHHh-----------c-cCCCEEEEEEEECCCCCEEEEEECCCCC
Confidence            466666653221 22345678888888888776543211           0 000111222222  55555554332222


Q ss_pred             CCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCC-------CccCcEEEEEcCCCcE--EEe
Q 010571          114 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSR-------KLLNDVHFLDLETMTW--DAV  183 (507)
Q Consensus       114 ~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~-------~~~~~~~~~d~~t~~W--~~~  183 (507)
                      . ...++++|+.++.....   ...+.... ...+.. +++.++++..+...       .....++.+++.+..-  ..+
T Consensus       145 ~-~~~i~v~dl~tg~~~~~---~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv  219 (695)
T 2bkl_A          145 D-EAVLHVIDVDSGEWSKV---DVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV  219 (695)
T ss_dssp             S-CCEEEEEETTTCCBCSS---CCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred             c-eEEEEEEECCCCCCcCC---cccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE
Confidence            1 34699999999875311   11222211 223332 45555555543321       1245699999987763  222


Q ss_pred             ecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccC
Q 010571          184 EVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGD  263 (507)
Q Consensus       184 ~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~  263 (507)
                      ..  ....+....+.....++..++++..... ..+++++++..+..++.+....    . .....+..++.+|+.... 
T Consensus       220 ~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~----~-~~~~~~~~~g~l~~~s~~-  290 (695)
T 2bkl_A          220 HE--RTGDPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGV----G-AKYEVHAWKDRFYVLTDE-  290 (695)
T ss_dssp             EC--CCCCTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECS----S-CCEEEEEETTEEEEEECT-
T ss_pred             Ee--cCCCCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCC----C-ceEEEEecCCcEEEEECC-
Confidence            21  1111222333444445544444433221 3467888887777787764311    1 112222346665444322 


Q ss_pred             CCCCcceEEEEEcCcCe---eEEec
Q 010571          264 NNNGCQETIVLNMTKLA---WSILT  285 (507)
Q Consensus       264 ~~~~~~d~~~~d~~~~~---W~~~~  285 (507)
                       ......++++|+.+..   |..+.
T Consensus       291 -~~~~~~l~~~d~~~~~~~~~~~l~  314 (695)
T 2bkl_A          291 -GAPRQRVFEVDPAKPARASWKEIV  314 (695)
T ss_dssp             -TCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred             -CCCCCEEEEEeCCCCCccCCeEEe
Confidence             2223578899987654   87764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=94.23  E-value=3.6  Score=39.56  Aligned_cols=147  Identities=18%  Similarity=0.216  Sum_probs=73.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.-...-..                  .......+.+  ++..++.|+.+    
T Consensus       134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~------------------h~~~v~~~~~~p~~~~l~s~s~d----  186 (393)
T 1erj_A          134 DGKFLATGAED-----RLIRIWDIENRKIVMILQG------------------HEQDIYSLDYFPSGDKLVSGSGD----  186 (393)
T ss_dssp             TSSEEEEEETT-----SCEEEEETTTTEEEEEECC------------------CSSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEEcCC-----CeEEEEECCCCcEEEEEcc------------------CCCCEEEEEEcCCCCEEEEecCC----
Confidence            45566666643     4688999988754332111                  0111122222  45555666542    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCC--
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP--  189 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~--  189 (507)
                        ..+.+||+.++.......   ..   ....++.+   ++.+++.|+.+      ..+.+||+.+..-...-.....  
T Consensus       187 --~~v~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~  252 (393)
T 1erj_A          187 --RTVRIWDLRTGQCSLTLS---IE---DGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESG  252 (393)
T ss_dssp             --SEEEEEETTTTEEEEEEE---CS---SCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------
T ss_pred             --CcEEEEECCCCeeEEEEE---cC---CCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCC
Confidence              358889998886544321   11   11222222   45677777754      3588999887764432210000  


Q ss_pred             -CCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          190 -PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       190 -p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                       .....-.+++...++.+++.|+.+     ..+.+||+.+.
T Consensus       253 ~~h~~~v~~v~~~~~g~~l~s~s~d-----~~v~~wd~~~~  288 (393)
T 1erj_A          253 TGHKDSVYSVVFTRDGQSVVSGSLD-----RSVKLWNLQNA  288 (393)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETT-----SEEEEEEC---
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCC-----CEEEEEECCCC
Confidence             001111223333455567777755     35778887653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=94.22  E-value=3.5  Score=38.34  Aligned_cols=234  Identities=13%  Similarity=-0.046  Sum_probs=113.6

Q ss_pred             CCCeEeeCCCCCeEEeccCCCC---------------CCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCce
Q 010571            3 SGSWHLELPYDLWVTLPVSGAR---------------PSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAW   65 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~---------------p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W   65 (507)
                      ...+.||+....+..+......               +....-+++++.  ++.|||....      ..+.+||+.++..
T Consensus        40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~  113 (322)
T 2fp8_A           40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHA  113 (322)
T ss_dssp             SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEECTTCEEC
T ss_pred             CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEEeCCCCEE
Confidence            3466778777777655421110               000112455555  5788887431      2488999888766


Q ss_pred             eEeeeccccccCccccCCccCCCCCccceeeEE-E-CCEEEEEcccCCC-----------CCCcceEEEEECCCCcEEEe
Q 010571           66 SNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-W-GTKLLILGGHYKK-----------SSDSMIVRFIDLETNLCGVM  132 (507)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~-----------~~~~~~~~~~d~~t~~W~~~  132 (507)
                      +.+.....            ..+..+ -..++. - ++.||+.-.....           ......+++||+.++....+
T Consensus       114 ~~~~~~~~------------~~~~~~-p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  180 (322)
T 2fp8_A          114 TQLATSVD------------GVPFKW-LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL  180 (322)
T ss_dssp             EEEESEET------------TEECSC-EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred             EEecccCC------------CCcccc-cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence            55532210            001111 122332 2 5688886422110           01235699999988876654


Q ss_pred             ecCCCCCCCcccceEEEE-C-CEEEEEcCcCCCCCccCcEEEEEcCC---CcEEEeecCCCCCCCCCCceEEEEcCcEEE
Q 010571          133 ETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLET---MTWDAVEVTQTPPAPRYDHSAALHANRYLI  207 (507)
Q Consensus       133 ~~~g~~p~~r~~~~~~~~-~-~~l~~~GG~~~~~~~~~~~~~~d~~t---~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~  207 (507)
                      ......|     ..++.- + +.||+.-..      .+.|++|++.+   ........   .+.   -..++.-.++.||
T Consensus       181 ~~~~~~p-----~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~---~~g---P~gi~~d~~G~l~  243 (322)
T 2fp8_A          181 LKELHVP-----GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVK---IPN---PGNIKRNADGHFW  243 (322)
T ss_dssp             EEEESCC-----CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEE---CSS---EEEEEECTTSCEE
T ss_pred             ccCCccC-----cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEe---CCC---CCCeEECCCCCEE
Confidence            3211111     122222 2 357776321      35699999875   34443331   111   1234555556688


Q ss_pred             EEeCCCCC-----cCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCc
Q 010571          208 VFGGCSHS-----IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTK  278 (507)
Q Consensus       208 i~GG~~~~-----~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~  278 (507)
                      |.......     ...+.+.+||+.......+......+ .....+++..+++|||....     .+.+.+|++..
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~~-----~~~i~~~~~~~  313 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTLF-----HGSVGILVYDK  313 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECSS-----CSEEEEEEC--
T ss_pred             EEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeecC-----CCceEEEeccc
Confidence            76532100     01245889998654444443211111 11222334457788876432     12467777543

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=94.20  E-value=4  Score=38.87  Aligned_cols=189  Identities=16%  Similarity=0.252  Sum_probs=108.5

Q ss_pred             CeEee--CCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCce--EEEECCCC-----ceeEeeeccccc
Q 010571            5 SWHLE--LPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDV--QVFDLRSL-----AWSNLRLETELD   75 (507)
Q Consensus         5 ~~~~d--~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~--~~~d~~t~-----~W~~~~~~~~~~   75 (507)
                      .|.+-  .....|..-.. +-+|..-.-|+.|.+++.=|.+|=-+++.....+  +.|...-+     .=+.++..-   
T Consensus       260 ~W~~~T~F~~spW~~t~L-~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey---  335 (670)
T 3ju4_A          260 NWHMGTSFHKSPWRKTDL-GLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEY---  335 (670)
T ss_dssp             EEEEEECSTTSCCEEEEC-CSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGG---
T ss_pred             eeeeeeeeccCCceeccc-ccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhh---
Confidence            45443  34778875543 3467777889999999988888854333333332  22221111     111222111   


Q ss_pred             cCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCC--cccceEEEECCE
Q 010571           76 ADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA--RGGHSVTLVGSR  153 (507)
Q Consensus        76 ~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~--r~~~~~~~~~~~  153 (507)
                                  -+.-+-.|+-.+++.||+.--.......-+.+.+-+..-.+|+.+..    |..  ......+.+++.
T Consensus       336 ------------~~~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrf----p~nvHhtnlPFakvgD~  399 (670)
T 3ju4_A          336 ------------EPDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRF----PHNVHHTTLPFAKVGDD  399 (670)
T ss_dssp             ------------CTTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEEC----TTCCCSSCCCEEEETTE
T ss_pred             ------------ccccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheec----cccccccCCCcceeCCE
Confidence                        11334456667799999976444333335568888888889999963    322  223345678999


Q ss_pred             EEEEcCcCC---------CCCc---cCcEEEE--Ec-----CCCcEEEeec---CCCCCCCCCCceEEEEcCcEE-EEEe
Q 010571          154 LIIFGGEDR---------SRKL---LNDVHFL--DL-----ETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFG  210 (507)
Q Consensus       154 l~~~GG~~~---------~~~~---~~~~~~~--d~-----~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~~l-~i~G  210 (507)
                      ||+||---.         +.++   .....+.  ++     +.-.|..+.-   .|.....-.+...+++.++.| ||||
T Consensus       400 l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFG  479 (670)
T 3ju4_A          400 LIMFGSERAENEWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFG  479 (670)
T ss_dssp             EEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEec
Confidence            999986421         1111   1223332  32     3346766642   345555556666677778866 6899


Q ss_pred             CCC
Q 010571          211 GCS  213 (507)
Q Consensus       211 G~~  213 (507)
                      |-+
T Consensus       480 gEd  482 (670)
T 3ju4_A          480 GED  482 (670)
T ss_dssp             EBC
T ss_pred             Ccc
Confidence            954

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.17  E-value=3.1  Score=38.59  Aligned_cols=111  Identities=13%  Similarity=0.074  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE----CCEEEEEcccCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW----GTKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~  112 (507)
                      ++.+++.|+.+     ..+.+||+.++....+.....                .......+.+    ++.+++.|+.+. 
T Consensus        24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~g----------------H~~~V~~v~~~~~~~~~~l~s~s~D~-   81 (316)
T 3bg1_A           24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLRG----------------HEGPVWQVAWAHPMYGNILASCSYDR-   81 (316)
T ss_dssp             GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEEC----------------CSSCEEEEEECCGGGSSCEEEEETTS-
T ss_pred             CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcC----------------CCccEEEEEeCCCCCCCEEEEEECCC-
Confidence            45666667633     457888887765433332211                1111222332    256666776432 


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--C--CEEEEEcCcCCCCCccCcEEEEEcCCC-cEEEe
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAV  183 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~--~~l~~~GG~~~~~~~~~~~~~~d~~t~-~W~~~  183 (507)
                           .+.++|+.++.|.....   +........++.+  +  +.+++.|+.+.      .+..+|+.+. .|...
T Consensus        82 -----~v~iWd~~~~~~~~~~~---~~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           82 -----KVIIWREENGTWEKSHE---HAGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEVK  143 (316)
T ss_dssp             -----CEEEECCSSSCCCEEEE---ECCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEEC
T ss_pred             -----EEEEEECCCCcceEEEE---ccCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCccee
Confidence                 38888988877755432   1111111122222  2  45666776542      4777887665 46543

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=94.11  E-value=0.43  Score=34.60  Aligned_cols=51  Identities=18%  Similarity=0.283  Sum_probs=26.7

Q ss_pred             hHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH
Q 010571          415 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       415 l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~  465 (507)
                      ++.+++.++.+.......+......+...+.+..+.+..+..++++++..+
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE   54 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE   54 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344555555555555444555555555555555555555555555555444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=94.08  E-value=2.1  Score=45.41  Aligned_cols=224  Identities=12%  Similarity=0.056  Sum_probs=107.3

Q ss_pred             EECCEEEEEcCCCCCccCCceEEEECC---CCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEccc
Q 010571           35 VFDQKLYIVGGSRNGRFLSDVQVFDLR---SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGH  109 (507)
Q Consensus        35 ~~~~~lyv~GG~~~~~~~~~~~~~d~~---t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  109 (507)
                      ..|+.+|.+-- ..+.....+|+.+..   .+.|..+-.....           . ...........+  +++.++++..
T Consensus       116 pdG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l-----------~-~~~~~~~~~~~~SPDG~~la~~~~  182 (741)
T 1yr2_A          116 RRGASVFYSWN-SGLMNQSQLLVRPADAPVGTKGRVLLDPNTW-----------A-KDGATALDAWAASDDGRLLAYSVQ  182 (741)
T ss_dssp             EETTEEEEEEE-CSSCSSCEEEEEETTSCTTCCCEEEECGGGC-----------C-----EEEEEEEECTTSSEEEEEEE
T ss_pred             EECCEEEEEEE-cCCCeEEEEEEEcCCccCCCCCEEEECHHHh-----------c-cCCCEEEEeEEECCCCCEEEEEEc
Confidence            34666665532 222224667888876   6777765332210           0 001111122222  5555555543


Q ss_pred             CCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCC--------CCccCcEEEEEcCCCcE-
Q 010571          110 YKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS--------RKLLNDVHFLDLETMTW-  180 (507)
Q Consensus       110 ~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~--------~~~~~~~~~~d~~t~~W-  180 (507)
                      ..... ...++++|+.++.......    +... ....+...++.++++..+..        ......++.+++.+..- 
T Consensus       183 ~~G~e-~~~i~v~dl~tg~~~~~~~----~~~~-~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~  256 (741)
T 1yr2_A          183 DGGSD-WRTVKFVGVADGKPLADEL----KWVK-FSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA  256 (741)
T ss_dssp             ETTCS-EEEEEEEETTTCCEEEEEE----EEEE-SCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGG
T ss_pred             CCCCc-eEEEEEEECCCCCCCCccC----CCce-eccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchh
Confidence            32221 3469999999998765421    1111 01222222233333333221        11244688888877652 


Q ss_pred             -EEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC--c-EEeeeecCCCCCCCcceEEEEECCEE
Q 010571          181 -DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN--E-WSQPEIKGDLVTGRAGHAGITIDENW  256 (507)
Q Consensus       181 -~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~--~-W~~~~~~~~~p~~r~~~~~~~~~~~l  256 (507)
                       ..+..  ....+..........+++.+++.........++++++|+.+.  . |+.+...  . ... ......-++.+
T Consensus       257 ~~lv~~--~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~-~~~-~~~~~~dg~~l  330 (741)
T 1yr2_A          257 DQPVFA--TPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD--L-KAQ-WDFVDGVGDQL  330 (741)
T ss_dssp             CEEEEC--CTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS--S-SSC-EEEEEEETTEE
T ss_pred             CEEEec--cCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC--C-Cce-EEEEeccCCEE
Confidence             12211  111122233344445554444443332223578999999876  6 7776321  1 111 11122335566


Q ss_pred             EEEeccCCCCCcceEEEEEcCc--CeeEEec
Q 010571          257 YIVGGGDNNNGCQETIVLNMTK--LAWSILT  285 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~--~~W~~~~  285 (507)
                      ++....  ......++++|+.+  ..|..+.
T Consensus       331 ~~~s~~--~~~~~~l~~~d~~~~~~~~~~l~  359 (741)
T 1yr2_A          331 WFVSGD--GAPLKKIVRVDLSGSTPRFDTVV  359 (741)
T ss_dssp             EEEECT--TCTTCEEEEEECSSSSCEEEEEE
T ss_pred             EEEECC--CCCCCEEEEEeCCCCccccEEEe
Confidence            666432  22235789999887  5788764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.06  E-value=4.4  Score=38.82  Aligned_cols=199  Identities=12%  Similarity=0.088  Sum_probs=91.1

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCC--cEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEE
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLD  174 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d  174 (507)
                      ++.+++.|+.+.      .+.+||..+.  ....+.   .+........++.+   ++.+++.|+.+      ..+.+||
T Consensus        78 ~~~~l~~~~~dg------~v~vw~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~v~iwd  142 (416)
T 2pm9_A           78 NNKIIAGALDNG------SLELYSTNEANNAINSMA---RFSNHSSSVKTVKFNAKQDNVLASGGNN------GEIFIWD  142 (416)
T ss_dssp             SSSCEEEEESSS------CEEEECCSSTTSCCCEEE---ECCCSSSCCCEEEECSSSTTBEEEECSS------SCEEBCB
T ss_pred             CCCeEEEEccCC------eEEEeecccccccccchh---hccCCccceEEEEEcCCCCCEEEEEcCC------CeEEEEE
Confidence            566666666432      3788888761  111221   11111111122233   25677777653      3588888


Q ss_pred             cCCCc------EEEeecCCCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCC--CCc
Q 010571          175 LETMT------WDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT--GRA  245 (507)
Q Consensus       175 ~~t~~------W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~--~r~  245 (507)
                      +.+..      -.. ...........-.+++...+ +.+++.|+.+     ..+.+||+.+..-...-. ...+.  ...
T Consensus       143 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~-~~~~~~~~~~  215 (416)
T 2pm9_A          143 MNKCTESPSNYTPL-TPGQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIHLS-YTSPNSGIKQ  215 (416)
T ss_dssp             TTTTSSCTTTCCCB-CCCCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEEEC-CCCCSSCCCC
T ss_pred             CCCCcccccccccc-ccccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceEEe-ccccccccCC
Confidence            87764      111 10000111112223344444 4577777764     458999998876544211 11000  022


Q ss_pred             ceEEEEE--C-CEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcC-ceEEEEEcccCCCc
Q 010571          246 GHAGITI--D-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEG-EHHLVAFGGYNGKY  321 (507)
Q Consensus       246 ~~~~~~~--~-~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~  321 (507)
                      ...++.+  + ..+++.|+.++.  ...+.+||+.+..- .+..+.     ..+......+.+.. +..+++.|+.+   
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~~-----~~~~~~v~~~~~s~~~~~~l~s~~~d---  284 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTLN-----QGHQKGILSLDWCHQDEHLLLSSGRD---  284 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCCC-----SCCSSCEEEEEECSSCSSCEEEEESS---
T ss_pred             ceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEee-----cCccCceeEEEeCCCCCCeEEEEeCC---
Confidence            2233333  2 257777765431  11467888776420 011111     01112233333432 44566667754   


Q ss_pred             CCeEEEEECCC
Q 010571          322 NNEVFVMRLKP  332 (507)
Q Consensus       322 ~~~v~~~~~~~  332 (507)
                       ..+.++|+.+
T Consensus       285 -g~v~~wd~~~  294 (416)
T 2pm9_A          285 -NTVLLWNPES  294 (416)
T ss_dssp             -SEEEEECSSS
T ss_pred             -CCEEEeeCCC
Confidence             3466777654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=93.85  E-value=4.3  Score=37.95  Aligned_cols=186  Identities=11%  Similarity=-0.038  Sum_probs=89.3

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEE-ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAV-FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      ..|.||+.++....+..    +. . -++++. -++.+++...       ..+++||+.++....+.....         
T Consensus        72 ~i~~~d~~~~~~~~~~~----~~-~-v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~~~~---------  129 (326)
T 2ghs_A           72 ELHELHLASGRKTVHAL----PF-M-GSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELES---------  129 (326)
T ss_dssp             EEEEEETTTTEEEEEEC----SS-C-EEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSST---------
T ss_pred             EEEEEECCCCcEEEEEC----CC-c-ceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEEeeCCC---------
Confidence            46788888776655442    11 1 122222 3677777542       349999999998876643210         


Q ss_pred             CccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEEcCc
Q 010571           83 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGE  160 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~GG~  160 (507)
                         ..+..+....++.-++++|+.............++.||  +++...+..  ...   ....++.. ++ .+|+....
T Consensus       130 ---~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~---~~~~i~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          130 ---DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DIS---IPNSICFSPDGTTGYFVDTK  199 (326)
T ss_dssp             ---TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EES---SEEEEEECTTSCEEEEEETT
T ss_pred             ---CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCc---ccCCeEEcCCCCEEEEEECC
Confidence               01111222222223567776432111112245799998  566655431  110   11122222 33 57765432


Q ss_pred             CCCCCccCcEEEEEcC--CC-cEE---EeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          161 DRSRKLLNDVHFLDLE--TM-TWD---AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       161 ~~~~~~~~~~~~~d~~--t~-~W~---~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                            .+.+++||+.  ++ ...   .......  ....-.+++...++.+|+.....     +.+.+||+....-..+
T Consensus       200 ------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~~-----~~v~~~d~~g~~~~~i  266 (326)
T 2ghs_A          200 ------VNRLMRVPLDARTGLPTGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWGE-----GAVDRYDTDGNHIARY  266 (326)
T ss_dssp             ------TCEEEEEEBCTTTCCBSSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEETT-----TEEEEECTTCCEEEEE
T ss_pred             ------CCEEEEEEcccccCCcccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeCC-----CEEEEECCCCCEEEEE
Confidence                  3469999975  44 211   1110000  00111234444556677754211     4689999854433333

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=93.83  E-value=6.4  Score=39.96  Aligned_cols=195  Identities=12%  Similarity=0.022  Sum_probs=87.5

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCC------cEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEE
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETN------LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVH  171 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~------~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~  171 (507)
                      ++++++.|+.+      ..+.+||..++      .......   .........++.+  ++..++.+|.+...  ...++
T Consensus        77 ~~~~l~s~~~d------g~v~vw~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~~--~~~v~  145 (615)
T 1pgu_A           77 GSQYLCSGDES------GKVIVWGWTFDKESNSVEVNVKSE---FQVLAGPISDISWDFEGRRLCVVGEGRDN--FGVFI  145 (615)
T ss_dssp             TCCEEEEEETT------SEEEEEEEEEEGGGTEEEEEEEEE---EECCSSCEEEEEECTTSSEEEEEECCSSC--SEEEE
T ss_pred             CCCEEEEecCC------CEEEEEeCCCCcccccccccccch---hhcccccEEEEEEeCCCCEEEEeccCCCC--ccEEE
Confidence            55677777653      24777777654      3333321   1111111222222  44555566543221  34577


Q ss_pred             EEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcE-EEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEE
Q 010571          172 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI  250 (507)
Q Consensus       172 ~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~  250 (507)
                      .+|.  .+-...-   . .....-.++....++. +++.|+.+     ..+.+||+.+..-...-  ...........++
T Consensus       146 ~~d~--~~~~~~~---~-~~~~~v~~~~~~~~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~--~~~~~~~~~v~~~  212 (615)
T 1pgu_A          146 SWDS--GNSLGEV---S-GHSQRINACHLKQSRPMRSMTVGDD-----GSVVFYQGPPFKFSASD--RTHHKQGSFVRDV  212 (615)
T ss_dssp             ETTT--CCEEEEC---C-SCSSCEEEEEECSSSSCEEEEEETT-----TEEEEEETTTBEEEEEE--CSSSCTTCCEEEE
T ss_pred             EEEC--CCcceee---e-cCCccEEEEEECCCCCcEEEEEeCC-----CcEEEEeCCCcceeeee--cccCCCCceEEEE
Confidence            7763  3221111   0 1111122333334443 66666654     46888998765543321  1111100022333


Q ss_pred             EE--C-CEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEE
Q 010571          251 TI--D-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV  327 (507)
Q Consensus       251 ~~--~-~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~  327 (507)
                      .+  + +..++.|+.++     .+.+||+.+......-. .   +...+......+.+. +..+++.|+.+    ..+..
T Consensus       213 ~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~-~---~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~  278 (615)
T 1pgu_A          213 EFSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYIE-D---DQEPVQGGIFALSWL-DSQKFATVGAD----ATIRV  278 (615)
T ss_dssp             EECSTTCCEEEEEETTC-----CEEEEETTTCCEEEECC-B---TTBCCCSCEEEEEES-SSSEEEEEETT----SEEEE
T ss_pred             EECCCCCCEEEEEeCCC-----eEEEEECCCCCEeEEec-c---cccccCCceEEEEEc-CCCEEEEEcCC----CcEEE
Confidence            33  4 56777777543     47889987765443210 0   000111222333333 33455666644    35666


Q ss_pred             EECCC
Q 010571          328 MRLKP  332 (507)
Q Consensus       328 ~~~~~  332 (507)
                      +|+.+
T Consensus       279 wd~~~  283 (615)
T 1pgu_A          279 WDVTT  283 (615)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            77654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.77  E-value=5  Score=38.50  Aligned_cols=149  Identities=15%  Similarity=0.148  Sum_probs=73.6

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      +++.++.|+.+.      .+.+||..+++-...-   ... ...-.+++.. ++..++.|+.+      ..+.++|+.++
T Consensus       134 dg~~l~s~~~d~------~i~iwd~~~~~~~~~~---~~h-~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~  197 (393)
T 1erj_A          134 DGKFLATGAEDR------LIRIWDIENRKIVMIL---QGH-EQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTG  197 (393)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEE---CCC-SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTT
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcEEEEE---ccC-CCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCC
Confidence            566777776432      4889999887644332   111 1111122222 34555666543      35888999887


Q ss_pred             cEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCC--CCCCcceEEEEE--C
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDL--VTGRAGHAGITI--D  253 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~--p~~r~~~~~~~~--~  253 (507)
                      +.......     .....+++... ++.+++.|+.+     ..+.+||+.+..-...-.....  ......-.++.+  +
T Consensus       198 ~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          198 QCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             EEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             eeEEEEEc-----CCCcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence            65443211     11112223333 55577777765     3588899887654332100000  011111123333  4


Q ss_pred             CEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          254 ENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      +..++.|+.++     .+.++|+.+.
T Consensus       268 g~~l~s~s~d~-----~v~~wd~~~~  288 (393)
T 1erj_A          268 GQSVVSGSLDR-----SVKLWNLQNA  288 (393)
T ss_dssp             SSEEEEEETTS-----EEEEEEC---
T ss_pred             CCEEEEEeCCC-----EEEEEECCCC
Confidence            56777776443     4677776543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=93.56  E-value=0.35  Score=39.00  Aligned_cols=67  Identities=13%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      .+..++++..+.++.++++..+|+...+.++.+.+.+.++++.++.          ++.+++..+++++..++.+++
T Consensus        68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~----------~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIK----------ELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence            3555555666666666666666666655555555544444443333          344445555555555555554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=93.56  E-value=4.1  Score=36.84  Aligned_cols=218  Identities=12%  Similarity=0.093  Sum_probs=105.8

Q ss_pred             CeEeeCCCCCeEEeccCCCCCC-ccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            5 SWHLELPYDLWVTLPVSGARPS-PRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      +.+||+....-..+...+..+. ...-+++++.  ++.||+.+..    ....+.+||+.......+....         
T Consensus        53 i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~~~---------  119 (286)
T 1q7f_A           53 IQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTHQIQIYNQYGQFVRKFGATI---------  119 (286)
T ss_dssp             EEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGCEEEEECTTSCEEEEECTTT---------
T ss_pred             EEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----CCCEEEEECCCCcEEEEecCcc---------
Confidence            5567776444334432111111 1123344442  6788887632    1246889995433322222110         


Q ss_pred             CCccCCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEc
Q 010571           82 SGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFG  158 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~G  158 (507)
                              ...-+.++. -+++||+....      ...+.+||+.......+...+.+    .....+.+  ++.+|+..
T Consensus       120 --------~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~----~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          120 --------LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHL----EFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             --------CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTC----SSEEEEEECSSSEEEEEE
T ss_pred             --------CCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCcc----CCcEEEEECCCCCEEEEE
Confidence                    111123332 25678887542      23589999776544444321111    11223333  46888765


Q ss_pred             CcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCC-cEEEEECCCCcEEeeeec
Q 010571          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFN-DLHVLDLQTNEWSQPEIK  237 (507)
Q Consensus       159 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~-~i~~~d~~~~~W~~~~~~  237 (507)
                      ..      .+.+.+||+.......+...+...   .-.+++...++.+|+....+     + .|.+||+....-..+...
T Consensus       182 ~~------~~~i~~~~~~g~~~~~~~~~g~~~---~p~~i~~d~~G~l~v~~~~~-----~~~i~~~~~~g~~~~~~~~~  247 (286)
T 1q7f_A          182 NR------AHCVKVFNYEGQYLRQIGGEGITN---YPIGVGINSNGEILIADNHN-----NFNLTIFTQDGQLISALESK  247 (286)
T ss_dssp             GG------GTEEEEEETTCCEEEEESCTTTSC---SEEEEEECTTCCEEEEECSS-----SCEEEEECTTSCEEEEEEES
T ss_pred             CC------CCEEEEEcCCCCEEEEEccCCccC---CCcEEEECCCCCEEEEeCCC-----CEEEEEECCCCCEEEEEccc
Confidence            42      346999998655444443222111   11234444566788876432     3 689999765544444321


Q ss_pred             CCCCCCCcceEEEEE-CCEEEEEeccCCCCCcceEEEEEc
Q 010571          238 GDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNM  276 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~  276 (507)
                      ...  . ..++++.- ++++|+... +     +.+.+|+.
T Consensus       248 ~~~--~-~~~~i~~~~~g~l~vs~~-~-----~~v~v~~~  278 (286)
T 1q7f_A          248 VKH--A-QCFDVALMDDGSVVLASK-D-----YRLYIYRY  278 (286)
T ss_dssp             SCC--S-CEEEEEEETTTEEEEEET-T-----TEEEEEEC
T ss_pred             CCC--C-cceeEEECCCCcEEEECC-C-----CeEEEEEc
Confidence            111  1 11233332 568887732 1     35666664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=93.51  E-value=8.5  Score=40.35  Aligned_cols=110  Identities=17%  Similarity=0.097  Sum_probs=60.1

Q ss_pred             CCCeEeeCCC--CCeEEeccCCCCCC--c---cccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccc
Q 010571            3 SGSWHLELPY--DLWVTLPVSGARPS--P---RYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETE   73 (507)
Q Consensus         3 ~~~~~~d~~~--~~W~~~~~~~~~p~--~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~   73 (507)
                      ..+++||..+  ..|+.-........  .   ....+.++.++.||+-..      ...++.+|..|++  |+.-.....
T Consensus        80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l~AlDa~TG~~~W~~~~~~~~  153 (689)
T 1yiq_A           80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRLEAIDAKTGQRAWSVDTRADH  153 (689)
T ss_dssp             GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCSCT
T ss_pred             CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEEEEEECCCCCEeeeecCcCCC
Confidence            3467888764  45875431110000  0   112334567888887653      2468999999885  765432010


Q ss_pred             cccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEe
Q 010571           74 LDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVM  132 (507)
Q Consensus        74 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~  132 (507)
                                   ........+.++.++.+|+..+... ......++.||..|++  |+.-
T Consensus       154 -------------~~~~~~~~sP~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          154 -------------KRSYTITGAPRVVNGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             -------------TSCCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred             -------------CCCccccCCcEEECCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEec
Confidence                         0001222334556888887433221 1124469999999886  8765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=93.25  E-value=3.1  Score=39.33  Aligned_cols=153  Identities=14%  Similarity=0.107  Sum_probs=74.2

Q ss_pred             ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          150 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       150 ~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ..+..++.|+.+      ..|.++|+.+++-.........-....-.+++...++.+++.|+.+     ..+.++|+.++
T Consensus        91 s~d~~l~~~s~d------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~iwd~~~~  159 (344)
T 4gqb_B           91 VGERGILVASDS------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKVWDLAQQ  159 (344)
T ss_dssp             ETTTEEEEEETT------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTT
T ss_pred             eCCCeEEEEECC------CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCC
Confidence            344444555543      3588889887653222100000001111233334566677777765     35889999887


Q ss_pred             cEEeeeecCCCCCCCcceEEEEE--C-CEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEE-E
Q 010571          230 EWSQPEIKGDLVTGRAGHAGITI--D-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAI-I  305 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~-~  305 (507)
                      .-...-     ......-.++.+  + ..+++.|+.++     .+.++|+.+..-......      ...++....+. .
T Consensus       160 ~~~~~~-----~~h~~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~  223 (344)
T 4gqb_B          160 VVLSSY-----RAHAAQVTCVAASPHKDSVFLSCSEDN-----RILLWDTRCPKPASQIGC------SAPGYLPTSLAWH  223 (344)
T ss_dssp             EEEEEE-----CCCSSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTSSSCEEECC----------CCCEEEEEEC
T ss_pred             cEEEEE-----cCcCCceEEEEecCCCCCceeeecccc-----ccccccccccceeeeeec------ceeeccceeeeec
Confidence            544321     111111122333  2 35777777543     377889877653321111      11122233333 3


Q ss_pred             cCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          306 EGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       306 ~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      +.+..+++.|+.+    ..+.++|+.+.
T Consensus       224 p~~~~~l~sg~~d----g~v~~wd~~~~  247 (344)
T 4gqb_B          224 PQQSEVFVFGDEN----GTVSLVDTKST  247 (344)
T ss_dssp             SSCTTEEEEEETT----SEEEEEESCC-
T ss_pred             CCCCcceEEeccC----CcEEEEECCCC
Confidence            3345677778765    35677777543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=93.25  E-value=4.8  Score=36.68  Aligned_cols=188  Identities=8%  Similarity=0.050  Sum_probs=94.1

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  114 (507)
                      .+.+++.|..     ...++++|+.+++  |+.-....                 ....+..+..+++||+.+       
T Consensus         4 ~~~~lv~~~~-----~~~v~~~d~~tG~~~w~~~~~~~-----------------~~~~~~~~~pdG~ilvs~-------   54 (276)
T 3no2_A            4 PQHLLVGGSG-----WNKIAIINKDTKEIVWEYPLEKG-----------------WECNSVAATKAGEILFSY-------   54 (276)
T ss_dssp             CCEEEEECTT-----CSEEEEEETTTTEEEEEEECCTT-----------------CCCCEEEECTTSCEEEEC-------
T ss_pred             CCcEEEeeCC-----CCEEEEEECCCCeEEEEeCCCcc-----------------CCCcCeEECCCCCEEEeC-------
Confidence            4667777653     3568899998875  54422110                 122233333477888832       


Q ss_pred             CcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCC-cEEEeecCC-CC
Q 010571          115 DSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEVTQ-TP  189 (507)
Q Consensus       115 ~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~-~W~~~~~~g-~~  189 (507)
                       .+.+..||+ +++  |+...     +.....+++... ++.+++....+     ...++.||+... .|+.....+ ..
T Consensus        55 -~~~V~~~d~-~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~  122 (276)
T 3no2_A           55 -SKGAKMITR-DGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIER  122 (276)
T ss_dssp             -BSEEEEECT-TSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSS
T ss_pred             -CCCEEEECC-CCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCc
Confidence             234899998 553  55432     111122233333 45555543321     235788887433 244322111 01


Q ss_pred             CCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC-cEEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCCCCC
Q 010571          190 PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNG  267 (507)
Q Consensus       190 p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~-~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~  267 (507)
                      +... .+.+....++.+++....+     ..+..||+... .|+.-.  +.     ..+++... ++.++|.+..+    
T Consensus       123 ~~~~-~~~v~~~~~G~~lv~~~~~-----~~v~~~d~~G~~~w~~~~--~~-----~~~~~~~~~~g~~~v~~~~~----  185 (276)
T 3no2_A          123 PHAQ-FRQINKNKKGNYLVPLFAT-----SEVREIAPNGQLLNSVKL--SG-----TPFSSAFLDNGDCLVACGDA----  185 (276)
T ss_dssp             GGGS-CSCCEECTTSCEEEEETTT-----TEEEEECTTSCEEEEEEC--SS-----CCCEEEECTTSCEEEECBTT----
T ss_pred             cccc-ccCceECCCCCEEEEecCC-----CEEEEECCCCCEEEEEEC--CC-----CccceeEcCCCCEEEEeCCC----
Confidence            1111 1223344455455554322     46899998732 265421  11     12334444 67788776532    


Q ss_pred             cceEEEEEcCcC--eeEE
Q 010571          268 CQETIVLNMTKL--AWSI  283 (507)
Q Consensus       268 ~~d~~~~d~~~~--~W~~  283 (507)
                       ..++.||+.+.  .|+.
T Consensus       186 -~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          186 -HCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             -SEEEEECTTTCCEEEEE
T ss_pred             -CeEEEEeCcCCcEEEEe
Confidence             24889999855  4664

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=93.24  E-value=0.83  Score=34.46  Aligned_cols=33  Identities=3%  Similarity=0.144  Sum_probs=17.8

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~  443 (507)
                      +...|+..+...++.+.+.+.++.++++++.+.
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~   57 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQH   57 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666666555555555555554443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=93.12  E-value=10  Score=40.07  Aligned_cols=192  Identities=11%  Similarity=0.011  Sum_probs=93.5

Q ss_pred             cceEEEEECCCCcE--EEeecCCCCCCCcccceEEEE--CC-EEEEEcCcCCCCCccCcEEEEEcCCC--c-EEEeecCC
Q 010571          116 SMIVRFIDLETNLC--GVMETSGKVPVARGGHSVTLV--GS-RLIIFGGEDRSRKLLNDVHFLDLETM--T-WDAVEVTQ  187 (507)
Q Consensus       116 ~~~~~~~d~~t~~W--~~~~~~g~~p~~r~~~~~~~~--~~-~l~~~GG~~~~~~~~~~~~~~d~~t~--~-W~~~~~~g  187 (507)
                      ...++.++..+..-  ..+.   ..+........+.+  ++ .|++.......  ..++++.+|+.+.  . |..+... 
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~---~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--~~~~l~~~d~~~~~~~~~~~l~~~-  315 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVF---ATPELPKRGHGASVSSDGRWVVITSSEGTD--PVNTVHVARVTNGKIGPVTALIPD-  315 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEE---CCTTCTTCEEEEEECTTSCEEEEEEECTTC--SCCEEEEEEEETTEECCCEEEECS-
T ss_pred             CCEEEEEECCCCchhCEEEe---ccCCCCeEEEEEEECCCCCEEEEEEEccCC--CcceEEEEECCCCCCcccEEecCC-
Confidence            34688888876642  1221   11111111122222  34 45554432211  2568999999877  6 8877631 


Q ss_pred             CCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC--CcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC
Q 010571          188 TPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT--NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN  265 (507)
Q Consensus       188 ~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~  265 (507)
                        . . .....+...++.||+....+  .....|+.+|+.+  ..|+.+..  ....  .-......++.+++....+  
T Consensus       316 --~-~-~~~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~--~~~~--~l~~~~~~~~~lv~~~~~d--  383 (741)
T 1yr2_A          316 --L-K-AQWDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVP--ESKD--NLESVGIAGNRLFASYIHD--  383 (741)
T ss_dssp             --S-S-SCEEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEEC--CCSS--EEEEEEEEBTEEEEEEEET--
T ss_pred             --C-C-ceEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEec--CCCC--eEEEEEEECCEEEEEEEEC--
Confidence              1 1 11222233456576664432  2235699999987  57888632  1111  1112233467777665433  


Q ss_pred             CCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCC
Q 010571          266 NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       266 ~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~  334 (507)
                       ....++++++....-..+. ++.      .+........+++..|++ ...+......+|.||+.+..
T Consensus       384 -g~~~l~~~~~~g~~~~~l~-~~~------~~~v~~~~~s~d~~~l~~-~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          384 -AKSQVLAFDLDGKPAGAVS-LPG------IGSASGLSGRPGDRHAYL-SFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             -TEEEEEEEETTSCEEEECB-CSS------SCEEEEEECCBTCSCEEE-EEEETTEEEEEEEEETTTTE
T ss_pred             -CEEEEEEEeCCCCceeecc-CCC------CeEEEEeecCCCCCEEEE-EEcCCCCCCEEEEEECCCCc
Confidence             2456888887655444443 111      111111111122223332 22223345678888886544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=92.98  E-value=6  Score=41.40  Aligned_cols=64  Identities=14%  Similarity=0.029  Sum_probs=33.2

Q ss_pred             cEEEEEcCCCcE-EEeecCCCCCC--CCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          169 DVHFLDLETMTW-DAVEVTQTPPA--PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       169 ~~~~~d~~t~~W-~~~~~~g~~p~--~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      .++.+|+.+.+- ..+... ..+.  ...........++.++++..... .....++++|+.++....+
T Consensus       229 ~l~~~d~~~~~~~~~l~~~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          229 SLHVIGLNGPTHDLEMMPP-DDPRMREYYITMVKWATSTKVAVTWLNRA-QNVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             EEEEEESSSSCCCEECCCC-CCGGGSSEEEEEEEESSSSEEEEEEEETT-SCEEEEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCceeEEeeCC-ccCCCccceeEEEEEeCCCeEEEEEEcCC-CCeEEEEEEeCCCCcceEE
Confidence            688889887763 333210 0000  11112233345666554443221 2235689999988876654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.94  E-value=0.53  Score=37.98  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=31.5

Q ss_pred             HhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571          409 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      +.+...|+++++...+++..+..++...+.+++..++...+++.++.++++++.++
T Consensus        74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555555555555555555555555555555555555555555444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=92.88  E-value=12  Score=42.02  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=53.9

Q ss_pred             EEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          200 LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       200 ~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      ...++..+++|+.+     ..+.+||+.+.......   ..........+..-++..++.|+.++     .+.++|..+.
T Consensus       969 ~sp~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~dg-----~i~vwd~~~~ 1035 (1249)
T 3sfz_A          969 LSPHLEYVAFGDED-----GAIKIIELPNNRVFSSG---VGHKKAVRHIQFTADGKTLISSSEDS-----VIQVWNWQTG 1035 (1249)
T ss_dssp             ECTTSSEEEEEETT-----SCCEEEETTTTSCEEEC---CCCSSCCCCEEECSSSSCEEEECSSS-----BEEEEETTTT
T ss_pred             EcCCCCEEEEEcCC-----CCEEEEEcCCCceeeec---ccCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCC
Confidence            33455567777654     35788898776543321   11111111122222556777776543     4788998887


Q ss_pred             eeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          280 AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       280 ~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      ....+...         ......+.+..+..+ +.|+.+    ..+..+|+.+.
T Consensus      1036 ~~~~~~~~---------~~~v~~~~~~~~~~l-~~~~~d----g~v~vwd~~~~ 1075 (1249)
T 3sfz_A         1036 DYVFLQAH---------QETVKDFRLLQDSRL-LSWSFD----GTVKVWNVITG 1075 (1249)
T ss_dssp             EEECCBCC---------SSCEEEEEECSSSEE-EEEESS----SEEEEEETTTT
T ss_pred             ceEEEecC---------CCcEEEEEEcCCCcE-EEEECC----CcEEEEECCCC
Confidence            65533211         122333333344444 445543    35667776543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=92.82  E-value=6.2  Score=36.79  Aligned_cols=235  Identities=10%  Similarity=-0.016  Sum_probs=116.3

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeeccccccCccc
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKTE   80 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~~~~~~~   80 (507)
                      ..+.+|+.+..-......+.+.   .-+++++. ++.||+....     ...+.+||+...  .-..+......      
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~---~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~------  135 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFY---LPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQP------  135 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCS---SEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBC------
T ss_pred             cEEEEECCCCeEEeccCCCccC---CceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCC------
Confidence            3567777766654433211111   22334433 5668877552     346889998654  22222211100      


Q ss_pred             cCCccCCCCCccce-eeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC----CCCcccceEEEE--C
Q 010571           81 DSGLLEVLPPMSDH-CMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV----PVARGGHSVTLV--G  151 (507)
Q Consensus        81 ~~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~----p~~r~~~~~~~~--~  151 (507)
                          .......... .++..  ++.||+..+..     ...+.+||+....-..+...+..    +........+.+  +
T Consensus       136 ----g~~~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~  206 (329)
T 3fvz_A          136 ----GSDQNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH  206 (329)
T ss_dssp             ----CCSTTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred             ----CCCccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence                0000111122 23332  57899987521     33589999655443333322221    111222233333  3


Q ss_pred             -CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCC--CcCCCcEEEEECCC
Q 010571          152 -SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQT  228 (507)
Q Consensus       152 -~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~--~~~~~~i~~~d~~~  228 (507)
                       +.||+....      .+.|.+||+.+++....-...  .....-.+++... +.+|...|...  +...+.+.++|+.+
T Consensus       207 ~g~l~v~d~~------~~~I~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          207 LDQLCVADRE------NGRIQCFKTDTKEFVREIKHA--SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             TTEEEEEETT------TTEEEEEETTTCCEEEEECCT--TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             CCEEEEEECC------CCEEEEEECCCCcEEEEEecc--ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence             789987643      346999999877765543211  1111122333333 66777766421  22335789999888


Q ss_pred             CcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcC
Q 010571          229 NEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       229 ~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~  277 (507)
                      +.....-  +..+........+.+  ++.+||....++     .+.+|++.
T Consensus       278 g~~~~~~--~~~~~~~~~p~~ia~~~dG~lyvad~~~~-----~I~~~~~~  321 (329)
T 3fvz_A          278 GEIIDVF--KPVRKHFDMPHDIVASEDGTVYIGDAHTN-----TVWKFTLT  321 (329)
T ss_dssp             CCEEEEE--CCSSSCCSSEEEEEECTTSEEEEEESSSC-----CEEEEEEE
T ss_pred             CeEEEEE--cCCCCccCCeeEEEECCCCCEEEEECCCC-----EEEEEeCC
Confidence            8765531  211222222333444  457888765332     47777754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=92.82  E-value=5.9  Score=36.59  Aligned_cols=63  Identities=14%  Similarity=0.117  Sum_probs=33.9

Q ss_pred             CCE-EEEEcccCCCCCCcceEEEEEC-CCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTK-LLILGGHYKKSSDSMIVRFIDL-ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~-iyv~GG~~~~~~~~~~~~~~d~-~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++. +++.|+.+      ..+.+||+ .++....+.   ..+....-.+++...+.+++.|+.+      ..+..||+.+
T Consensus        67 ~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~  131 (342)
T 1yfq_A           67 NTDLQIYVGTVQ------GEILKVDLIGSPSFQALT---NNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRN  131 (342)
T ss_dssp             SSSEEEEEEETT------SCEEEECSSSSSSEEECB---SCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred             CCCcEEEEEcCC------CeEEEEEeccCCceEecc---ccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence            566 66777643      24889999 888765543   1001111122222325555566543      3588888754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.81  E-value=6.7  Score=37.16  Aligned_cols=149  Identities=8%  Similarity=-0.013  Sum_probs=75.5

Q ss_pred             cCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEc-CcE-EEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCC
Q 010571          167 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRY-LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR  244 (507)
Q Consensus       167 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~-l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r  244 (507)
                      ...++.+|+.+++...+...     ........... ++. |++............++.+|+.+..+..+..    ..+.
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~-----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~  237 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQD-----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE----HAEG  237 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEE-----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC----CCTT
T ss_pred             cceEEEEECCCCcEEeeccC-----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec----cCCC
Confidence            34689999999887766521     11112233334 343 4443321111222579999998877766521    1111


Q ss_pred             cceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEc-CceEEEEEcccC---
Q 010571          245 AGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIE-GEHHLVAFGGYN---  318 (507)
Q Consensus       245 ~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~l~v~GG~~---  318 (507)
                      .......+  +++.+++...........++++|+.+.....+...+.        ..  ....+ ++. ++++++..   
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--------~~--~~~s~~dg~-~l~~~~~~~p~  306 (396)
T 3c5m_A          238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--------CS--HLMSNFDGS-LMVGDGCDAPV  306 (396)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--------EE--EEEECSSSS-EEEEEECCC--
T ss_pred             ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC--------CC--CCccCCCCc-eEEEecCCcce
Confidence            12222333  4454444332222222349999998887776654321        12  22333 334 44444321   


Q ss_pred             ---------CCcCCeEEEEECCCCCC
Q 010571          319 ---------GKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       319 ---------~~~~~~v~~~~~~~~~w  335 (507)
                               ......+|.+|+.....
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          307 DVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             --------CCCCCCEEEEEETTTTBC
T ss_pred             eeccccccccCCCCcEEEEecccCce
Confidence                     12347899999876544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=92.75  E-value=11  Score=39.48  Aligned_cols=149  Identities=13%  Similarity=0.042  Sum_probs=80.0

Q ss_pred             cceEEEEECCCC--cEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCC---cEEEeecCCCCC
Q 010571          116 SMIVRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM---TWDAVEVTQTPP  190 (507)
Q Consensus       116 ~~~~~~~d~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~---~W~~~~~~g~~p  190 (507)
                      .+.++.+|..+.  .|..+..    +...........++.+|+....+..   ...++.+|+.+.   .|+.+.+...  
T Consensus       258 ~~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~--  328 (693)
T 3iuj_A          258 GNRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPERQ--  328 (693)
T ss_dssp             CCEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCCS--
T ss_pred             CcEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecCCC--
Confidence            357999998776  6877752    1111112234457899988765432   347999998764   4887753211  


Q ss_pred             CCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--C-CEEEEEeccCCCCC
Q 010571          191 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--D-ENWYIVGGGDNNNG  267 (507)
Q Consensus       191 ~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~  267 (507)
                       .. . ... ..+++|++..-.++   ...++++|+.......+.    .|..... .....  + +.+++...  +...
T Consensus       329 -~~-~-~~s-~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~----~p~~~~~-~~~~~~~d~~~l~~~~s--s~~t  394 (693)
T 3iuj_A          329 -QV-L-TVH-SGSGYLFAEYMVDA---TARVEQFDYEGKRVREVA----LPGLGSV-SGFNGKHDDPALYFGFE--NYAQ  394 (693)
T ss_dssp             -SC-E-EEE-EETTEEEEEEEETT---EEEEEEECTTSCEEEEEC----CSSSSEE-EECCCCTTCSCEEEEEE--CSSS
T ss_pred             -CE-E-EEE-EECCEEEEEEEECC---eeEEEEEECCCCeeEEee----cCCCceE-EeeecCCCCCEEEEEec--CCCC
Confidence             11 1 333 33554554432221   246889998866555542    2222111 11111  2 23443322  1123


Q ss_pred             cceEEEEEcCcCeeEEeccC
Q 010571          268 CQETIVLNMTKLAWSILTSV  287 (507)
Q Consensus       268 ~~d~~~~d~~~~~W~~~~~~  287 (507)
                      ...++.||+.+...+.+...
T Consensus       395 P~~l~~~d~~~g~~~~l~~~  414 (693)
T 3iuj_A          395 PPTLYRFEPKSGAISLYRAS  414 (693)
T ss_dssp             CCEEEEECTTTCCEEEEECC
T ss_pred             CCEEEEEECCCCeEEEEEeC
Confidence            35789999988877766543

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=92.74  E-value=2  Score=32.18  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=16.1

Q ss_pred             HhhhhhhHHHHHHhhccchhhHHhHHHHHhhHh
Q 010571          409 RTENSRFREKIDEVNSTHSELSKELSSVQGQLV  441 (507)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~  441 (507)
                      ..+...+.++|..++++...+..++...+.+..
T Consensus        17 ~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~   49 (96)
T 3q8t_A           17 ALEEERLIQELEDVEKNRKVVAENLEKVQAEAE   49 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            334455555555555555555444444444433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=92.67  E-value=11  Score=39.37  Aligned_cols=126  Identities=14%  Similarity=0.025  Sum_probs=69.7

Q ss_pred             eeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCC--CC---CcccceEEEECCEEEEEcCcCCCCCc
Q 010571           94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV--PV---ARGGHSVTLVGSRLIIFGGEDRSRKL  166 (507)
Q Consensus        94 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~--p~---~r~~~~~~~~~~~l~~~GG~~~~~~~  166 (507)
                      .+-++.++.||+...       ...++.+|..|++  |+.-......  +.   .....+.++.++.||+...       
T Consensus        71 ~~P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------  136 (677)
T 1kb0_A           71 ATPVVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------  136 (677)
T ss_dssp             CCCEEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------
T ss_pred             eCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------
Confidence            344567999999865       2358999998874  8765421000  00   0112234556788887532       


Q ss_pred             cCcEEEEEcCCCc--EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEee
Q 010571          167 LNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  234 (507)
Q Consensus       167 ~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~  234 (507)
                      ...++.+|..|++  |+..... ..+......+...+.++.+|+..+.........++.||..++.  |+.-
T Consensus       137 dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          137 DGRLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             TSEEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            2469999998875  8765320 1111111111222336656554332222234579999998875  8764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=92.65  E-value=2.4  Score=40.44  Aligned_cols=109  Identities=10%  Similarity=0.013  Sum_probs=51.1

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEE-EcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      ++..++.|+.+      ..+.+||+.+..-.................... ......+++++.+     ..+.+||+.+.
T Consensus       256 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~  324 (408)
T 4a11_B          256 DGLHLLTVGTD------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-----STIAVYTVYSG  324 (408)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-----TEEEEEETTTC
T ss_pred             CCCEEEEecCC------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-----CEEEEEECcCC
Confidence            44566666643      358999998765432221111111111111111 1222234444433     46889998876


Q ss_pred             cEEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          230 EWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       230 ~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      .-...-. +  ..... .+++.. ++.+++.|+.++     .+.+||+.+.
T Consensus       325 ~~~~~~~-~--~~~~v-~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~  366 (408)
T 4a11_B          325 EQITMLK-G--HYKTV-DCCVFQSNFQELYSGSRDC-----NILAWVPSLY  366 (408)
T ss_dssp             CEEEEEC-C--CSSCE-EEEEEETTTTEEEEEETTS-----CEEEEEECC-
T ss_pred             cceeeec-c--CCCeE-EEEEEcCCCCEEEEECCCC-----eEEEEeCCCC
Confidence            5443210 1  11111 122222 567777777554     3677777655

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=92.64  E-value=6.5  Score=36.64  Aligned_cols=147  Identities=10%  Similarity=-0.041  Sum_probs=76.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.+|+.+..     ...+++||+.++....+.. +                 ......+..-++++++...        
T Consensus        60 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~-~-----------------~~v~~i~~~~dg~l~v~~~--------  108 (326)
T 2ghs_A           60 SGTAWWFNIL-----ERELHELHLASGRKTVHAL-P-----------------FMGSALAKISDSKQLIASD--------  108 (326)
T ss_dssp             TTEEEEEEGG-----GTEEEEEETTTTEEEEEEC-S-----------------SCEEEEEEEETTEEEEEET--------
T ss_pred             CCEEEEEECC-----CCEEEEEECCCCcEEEEEC-C-----------------CcceEEEEeCCCeEEEEEC--------
Confidence            3677777542     2468999999887654432 1                 1122222334788877541        


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~  194 (507)
                      ..++.||+.+++...+..... ..+........+  ++.+|+.............++.||  +++...+.....     .
T Consensus       109 ~gl~~~d~~~g~~~~~~~~~~-~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~-----~  180 (326)
T 2ghs_A          109 DGLFLRDTATGVLTLHAELES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS-----I  180 (326)
T ss_dssp             TEEEEEETTTCCEEEEECSST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES-----S
T ss_pred             CCEEEEECCCCcEEEEeeCCC-CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc-----c
Confidence            249999999999877652111 011111122233  456665321111111245689998  566655432101     1


Q ss_pred             CceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECC
Q 010571          195 DHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       195 ~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~  227 (507)
                      ...++...++ .+|+....     .+.|++||+.
T Consensus       181 ~~~i~~s~dg~~lyv~~~~-----~~~I~~~d~~  209 (326)
T 2ghs_A          181 PNSICFSPDGTTGYFVDTK-----VNRLMRVPLD  209 (326)
T ss_dssp             EEEEEECTTSCEEEEEETT-----TCEEEEEEBC
T ss_pred             cCCeEEcCCCCEEEEEECC-----CCEEEEEEcc
Confidence            1233333344 56765432     2579999975

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.59  E-value=12  Score=39.58  Aligned_cols=189  Identities=11%  Similarity=0.058  Sum_probs=98.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.|+|-.       .+.+++||+.+.++.. +. .             . . ...-.+++..++.|++...        
T Consensus        73 ~g~lWigT-------~~Gl~~yd~~~~~f~~-~~-~-------------~-~-~~~i~~i~~~~g~lWigt~--------  120 (758)
T 3ott_A           73 NTYLYMGT-------DNGILVYNYRADRYEQ-PE-T-------------D-F-PTDVRTMALQGDTLWLGAL--------  120 (758)
T ss_dssp             TTEEEEEE-------TTEEEEEETTTTEECC-CS-C-------------C-C-CSCEEEEEEETTEEEEEET--------
T ss_pred             CCcEEEEe-------CCCeEEEeCCCCEEEC-cc-c-------------C-C-CceEEEEEecCCcEEEEcC--------
Confidence            55666643       2458899999987754 11 0             0 0 1111233445788887421        


Q ss_pred             ceEEEEECCCCcEEEeecC-CCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCC-CC
Q 010571          117 MIVRFIDLETNLCGVMETS-GKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP-AP  192 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~-g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p-~~  192 (507)
                      +-+++||+.++++...... ..+|..  ...+...  ++.|++..        .+.+++||+.+.++.......... ..
T Consensus       121 ~Gl~~~~~~~~~~~~~~~~~~~l~~~--~i~~i~~d~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~~~~~~~~  190 (758)
T 3ott_A          121 NGLYTYQLQSRKLTSFDTRRNGLPNN--TIYSIIRTKDNQIYVGT--------YNGLCRYIPSNGKFEGIPLPVHSSQSN  190 (758)
T ss_dssp             TEEEEEETTTCCEEEECHHHHCCSCS--CEEEEEECTTCCEEEEE--------TTEEEEEETTTTEEEEECCCCCTTCSS
T ss_pred             CcceeEeCCCCeEEEeccCCCCcCCC--eEEEEEEcCCCCEEEEe--------CCCHhhCccCCCceEEecCCCcccccc
Confidence            1388999999988776311 112221  1122222  45777732        135889999988887654211100 01


Q ss_pred             CCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE-CCEEEEEeccCCCCCcce
Q 010571          193 RYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQE  270 (507)
Q Consensus       193 r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d  270 (507)
                      ..-.+++... ++.|+|..  .     .-+++||+.+..+.....   .+.. .-.+++.- ++.|+|--  .     .-
T Consensus       191 ~~i~~i~~d~~~~~lWigt--~-----~Gl~~~~~~~~~~~~~~~---l~~~-~i~~i~~d~~g~lWigT--~-----~G  252 (758)
T 3ott_A          191 LFVNSLLEDTTRQCVWIGT--E-----GYLFQYFPSTGQIKQTEA---FHNN-SIKSLALDGNGDLLAGT--D-----NG  252 (758)
T ss_dssp             CCEEEEEEETTTTEEEEEE--E-----EEEEEEETTTTEEEEEEE---EEEE-EEEEEEECTTCCEEEEE--T-----TE
T ss_pred             ceeEEEEEECCCCEEEEEE--C-----CCCeEEcCCCCeEEeccC---CCCC-eEEEEEEcCCCCEEEEe--C-----Cc
Confidence            1112233332 34467632  1     248899999888876421   1111 11122222 35666542  1     14


Q ss_pred             EEEEEcCcCeeEEec
Q 010571          271 TIVLNMTKLAWSILT  285 (507)
Q Consensus       271 ~~~~d~~~~~W~~~~  285 (507)
                      +++|++.+..+..+.
T Consensus       253 l~~~~~~~~~~~~~~  267 (758)
T 3ott_A          253 LYVYHNDTTPLQHII  267 (758)
T ss_dssp             EEEECCTTSCCEEEC
T ss_pred             eeEEecCCCcEEEEE
Confidence            788998888776654

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=92.53  E-value=0.083  Score=54.12  Aligned_cols=9  Identities=0%  Similarity=-0.064  Sum_probs=5.3

Q ss_pred             eEEEEEcCc
Q 010571          270 ETIVLNMTK  278 (507)
Q Consensus       270 d~~~~d~~~  278 (507)
                      .+.+|+..+
T Consensus       224 GI~v~~~~~  232 (575)
T 2i1j_A          224 GLNIYEKDD  232 (575)
T ss_dssp             EEEEEETTC
T ss_pred             eeEEEeCCC
Confidence            366776554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.30  E-value=11  Score=38.53  Aligned_cols=108  Identities=12%  Similarity=0.018  Sum_probs=56.2

Q ss_pred             CCeEeeCCC--CCeEEeccCCCCCCcc---ccceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeecccccc
Q 010571            4 GSWHLELPY--DLWVTLPVSGARPSPR---YKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDA   76 (507)
Q Consensus         4 ~~~~~d~~~--~~W~~~~~~~~~p~~r---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~   76 (507)
                      .+++||..+  ..|+.-........+.   ...+.++.++.||+...      ...++.+|..|++  |+.-......  
T Consensus        79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~AlD~~TG~~~W~~~~~~~~~--  150 (582)
T 1flg_A           79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVALNKNTGKVVWKKKFADHGA--  150 (582)
T ss_dssp             EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEEEESSSCCEEEEEECSCGGG--
T ss_pred             CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEEEECCCCCEEeeecCCCCCc--
Confidence            478899864  4587654211111111   12344567888887532      2469999999985  7653221100  


Q ss_pred             CccccCCccCCCCCccceeeEEECC------EEEEEcccCCCCCCcceEEEEECCCCc--EEEe
Q 010571           77 DKTEDSGLLEVLPPMSDHCMVKWGT------KLLILGGHYKKSSDSMIVRFIDLETNL--CGVM  132 (507)
Q Consensus        77 ~~~~~~~~~~~p~~r~~~~~~~~~~------~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~  132 (507)
                                  .-....+-++.++      .||+ |...........++.||+.|++  |+..
T Consensus       151 ------------~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          151 ------------GYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             ------------TCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             ------------CcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeecC
Confidence                        0011112233455      5554 4321111124469999999875  8653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=92.28  E-value=6.8  Score=35.98  Aligned_cols=202  Identities=8%  Similarity=-0.010  Sum_probs=97.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE-ECCEEEEEcccCCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~  115 (507)
                      ++.||+.+-.     ...+++|++ ++....+....                 .. -++++. -+++||+....      
T Consensus        56 g~~l~~~d~~-----~~~i~~~~~-~g~~~~~~~~~-----------------~~-~~gl~~d~dG~l~v~~~~------  105 (305)
T 3dr2_A           56 QRTLVWSDLV-----GRRVLGWRE-DGTVDVLLDAT-----------------AF-TNGNAVDAQQRLVHCEHG------  105 (305)
T ss_dssp             GTEEEEEETT-----TTEEEEEET-TSCEEEEEESC-----------------SC-EEEEEECTTSCEEEEETT------
T ss_pred             CCEEEEEECC-----CCEEEEEeC-CCCEEEEeCCC-----------------Cc-cceeeECCCCCEEEEECC------
Confidence            4457776542     245888888 55544433211                 11 122222 25777776321      


Q ss_pred             cceEEEEECCCCcEEEeecCC-CCCCCcccceEEEE-CCEEEEE----cCcCC-------CCCccCcEEEEEcCCCcEEE
Q 010571          116 SMIVRFIDLETNLCGVMETSG-KVPVARGGHSVTLV-GSRLIIF----GGEDR-------SRKLLNDVHFLDLETMTWDA  182 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g-~~p~~r~~~~~~~~-~~~l~~~----GG~~~-------~~~~~~~~~~~d~~t~~W~~  182 (507)
                      ...+..||+. ++...+.... ..+..+. ..++.- ++.+|+.    |-...       .......+++||+.+++...
T Consensus       106 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~-~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~  183 (305)
T 3dr2_A          106 RRAITRSDAD-GQAHLLVGRYAGKRLNSP-NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR  183 (305)
T ss_dssp             TTEEEEECTT-SCEEEEECEETTEECSCC-CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred             CCEEEEECCC-CCEEEEEeccCCCccCCC-CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence            2358889886 6666654210 0011111 122222 5678874    33210       01113569999998888776


Q ss_pred             eecCCCCCCCCCCceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEE
Q 010571          183 VEVTQTPPAPRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIV  259 (507)
Q Consensus       183 ~~~~g~~p~~r~~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~  259 (507)
                      +. ....|     ..++...++ .||+..........+.|++|++..............+..  ......+  +++||+.
T Consensus       184 ~~-~~~~p-----~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~--~pdgi~~d~~G~lwv~  255 (305)
T 3dr2_A          184 MA-DLDHP-----NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG--LPDGFCVDRGGWLWSS  255 (305)
T ss_dssp             EE-EESSE-----EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS--CCCSEEECTTSCEEEC
T ss_pred             Ee-cCCCC-----cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC--CCCeEEECCCCCEEEe
Confidence            64 11111     234444444 477764422111125799999876543221111111111  1112233  4667765


Q ss_pred             eccCCCCCcceEEEEEcCcCeeEEec
Q 010571          260 GGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       260 GG~~~~~~~~d~~~~d~~~~~W~~~~  285 (507)
                      .+       ..+++||+.......+.
T Consensus       256 ~~-------~gv~~~~~~g~~~~~~~  274 (305)
T 3dr2_A          256 SG-------TGVCVFDSDGQLLGHIP  274 (305)
T ss_dssp             CS-------SEEEEECTTSCEEEEEE
T ss_pred             cC-------CcEEEECCCCCEEEEEE
Confidence            32       24889999766655553

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=92.22  E-value=6.7  Score=35.79  Aligned_cols=115  Identities=14%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             EEEEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCCCceEEEEcC---cEEEEEeCCCCCcCCCcEEEEECC
Q 010571          153 RLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHAN---RYLIVFGGCSHSIFFNDLHVLDLQ  227 (507)
Q Consensus       153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~---~~l~i~GG~~~~~~~~~i~~~d~~  227 (507)
                      .+++.|+.+.      .+.++|+.+..  |........  ....-.+++...+   +.+++.|+.+     ..+.++|+.
T Consensus       171 ~~l~sgs~D~------~v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D-----~~v~iWd~~  237 (297)
T 2pm7_B          171 RKFVTGGADN------LVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQD-----RTCIIWTQD  237 (297)
T ss_dssp             CEEEEEETTS------CEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETT-----SCEEEEEES
T ss_pred             ceEEEEcCCC------cEEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECC-----CcEEEEEeC
Confidence            4666776542      47777775543  543321100  0111112222233   3567777755     357777765


Q ss_pred             CC--cEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcC-cCeeEEeccC
Q 010571          228 TN--EWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSV  287 (507)
Q Consensus       228 ~~--~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~  287 (507)
                      +.  .|........ ..+.. ...+.+  ++.+++.||.++.     +.+++.. ...|..+..+
T Consensus       238 ~~~~~~~~~~~~~~-~~~~~-v~~~~~s~~g~~las~~~D~~-----v~lw~~~~~g~w~~~~~~  295 (297)
T 2pm7_B          238 NEQGPWKKTLLKEE-KFPDV-LWRASWSLSGNVLALSGGDNK-----VTLWKENLEGKWEPAGEV  295 (297)
T ss_dssp             STTSCCEEEESSSS-CCSSC-EEEEEECSSSCCEEEEETTSC-----EEEEEECTTSCEEEC---
T ss_pred             CCCCccceeeeecc-cCCCc-EEEEEECCCCCEEEEEcCCCc-----EEEEEECCCCcEEecccc
Confidence            53  3543211100 11111 122233  5667777775432     5556654 4578876543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.16  E-value=12  Score=38.49  Aligned_cols=110  Identities=13%  Similarity=0.072  Sum_probs=58.2

Q ss_pred             CCCeEeeC-CC--CCeEEeccCCCC--CCcc---ccceEEE--ECCE----EEEEcCCCCCccCCceEEEECCCCc--ee
Q 010571            3 SGSWHLEL-PY--DLWVTLPVSGAR--PSPR---YKHAAAV--FDQK----LYIVGGSRNGRFLSDVQVFDLRSLA--WS   66 (507)
Q Consensus         3 ~~~~~~d~-~~--~~W~~~~~~~~~--p~~r---~~~~~~~--~~~~----lyv~GG~~~~~~~~~~~~~d~~t~~--W~   66 (507)
                      ..+++||. .+  ..|+.-+.....  +.++   ...+.++  .++.    ||+...      ...++.+|..|++  |+
T Consensus        73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------dg~l~AlDa~TG~~~W~  146 (599)
T 1w6s_A           73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------DGNVAALNAETGETVWK  146 (599)
T ss_dssp             TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------TSEEEEEETTTCCEEEE
T ss_pred             CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------CCEEEEEECCCCCEEEe
Confidence            34789998 54  468765421110  0011   1233444  4666    777543      2469999999885  76


Q ss_pred             EeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEee
Q 010571           67 NLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVME  133 (507)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~  133 (507)
                      .-.....              .......+-++.++.||+-.+... ......++.||..|++  |+.-.
T Consensus       147 ~~~~~~~--------------~~~~~~ssP~v~~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          147 VENSDIK--------------VGSTLTIAPYVVKDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EECCCGG--------------GTCBCCSCCEEETTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEES
T ss_pred             ecCCCCC--------------ccceeecCCEEECCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEcC
Confidence            5321100              000112233456888876443211 1113469999999875  87654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=91.95  E-value=14  Score=40.89  Aligned_cols=144  Identities=13%  Similarity=-0.014  Sum_probs=76.8

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEE-EEEcCCCcEEEeecCCCCCCCCCCc
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVH-FLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~-~~d~~t~~W~~~~~~g~~p~~r~~~  196 (507)
                      .++.++..++....+.   ..+..+....... ++..+++++.      .+.++ .+|+.+..-..+.  +   .....+
T Consensus       318 ~i~~~~~~~~~~~~~~---~~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~--~---~~~~~~  382 (1045)
T 1k32_A          318 QAFIQDVSGTYVLKVP---EPLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFE--E---NLGNVF  382 (1045)
T ss_dssp             EEEEECTTSSBEEECS---CCSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECC--C---CCCSEE
T ss_pred             EEEEEcCCCCceEEcc---CCCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEec--C---Ccccee
Confidence            5888888877655543   1111121122222 5544444432      23688 8999887765543  1   112223


Q ss_pred             eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCC-----CCCcceE
Q 010571          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN-----NNGCQET  271 (507)
Q Consensus       197 ~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~-----~~~~~d~  271 (507)
                      .++...++..+++++..     ..++++|+.++.-..+....   .......+..-+++.+++++...     ......+
T Consensus       383 ~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~---~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i  454 (1045)
T 1k32_A          383 AMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSR---EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  454 (1045)
T ss_dssp             EEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECS---SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             eeEECCCCCEEEEECCC-----CeEEEEECCCCceEEeccCC---CCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence            34444555566666543     47999999988876653211   11111122223566666655432     1224579


Q ss_pred             EEEEcCcCeeEEe
Q 010571          272 IVLNMTKLAWSIL  284 (507)
Q Consensus       272 ~~~d~~~~~W~~~  284 (507)
                      +++|+.+.....+
T Consensus       455 ~l~d~~~g~~~~l  467 (1045)
T 1k32_A          455 HVYDMEGRKIFAA  467 (1045)
T ss_dssp             EEEETTTTEEEEC
T ss_pred             EEEECCCCcEEEe
Confidence            9999988775544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=91.93  E-value=8.1  Score=36.10  Aligned_cols=218  Identities=8%  Similarity=0.053  Sum_probs=107.4

Q ss_pred             CCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCc
Q 010571           12 YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPM   91 (507)
Q Consensus        12 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r   91 (507)
                      -..|+.+......+ ...-.+++..++.+|+.|..      ..+++-+-.-.+|+.+.....              .+..
T Consensus        65 G~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~--------------~~~~  123 (327)
T 2xbg_A           65 GQTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLDPK--------------LPGS  123 (327)
T ss_dssp             TSSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET------TEEEEESSTTSSCEECCCCTT--------------CSSC
T ss_pred             CCCCeECCCCCCCC-CccEEEEEecCCeEEEEECC------CeEEEECCCCCCceECccccC--------------CCCC
Confidence            45898886321111 11233444457788887531      233332222458988764321              0111


Q ss_pred             cceeeE-EECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCc
Q 010571           92 SDHCMV-KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        92 ~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~  169 (507)
                      . +.++ .-++.+|+.|..   .    .++.-+-.-.+|+.+..    +.....+.++.. ++.+|++|-.       ..
T Consensus       124 ~-~~i~~~~~~~~~~~~~~---g----~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-------G~  184 (327)
T 2xbg_A          124 P-RLIKALGNGSAEMITNV---G----AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-------GS  184 (327)
T ss_dssp             E-EEEEEEETTEEEEEETT---C----CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-------SS
T ss_pred             e-EEEEEECCCCEEEEeCC---c----cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-------Cc
Confidence            2 3333 346788887741   1    24444334568999863    222222333333 3466665521       13


Q ss_pred             EEEEEcC-CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECC-CCcEEeeeecCCCCCCCcce
Q 010571          170 VHFLDLE-TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       170 ~~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~  247 (507)
                      ++.-+-. -.+|+.+..    +.+...+.++...++.+|+.+..+      .+++.+.. ..+|+.+.. +.++.....+
T Consensus       185 ~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~~~~G------~~~~s~~D~G~tW~~~~~-~~~~~~~~~~  253 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMIVNGG------KIAFSDPDNSENWGELLS-PLRRNSVGFL  253 (327)
T ss_dssp             EEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEEETTT------EEEEEETTEEEEECCCBC-TTSSCCSCEE
T ss_pred             EEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEEeCCc------eEEEecCCCCCeeEeccC-CcccCCcceE
Confidence            4444322 578998852    334444555555566688776421      24443322 457987632 1122222223


Q ss_pred             EEEEE-CCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          248 AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       248 ~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      +++.. ++.+|++|+. +     .+++-.-.-.+|+.+..
T Consensus       254 ~v~~~~~~~~~~~g~~-g-----~i~~S~DgG~tW~~~~~  287 (327)
T 2xbg_A          254 DLAYRTPNEVWLAGGA-G-----ALLCSQDGGQTWQQDVD  287 (327)
T ss_dssp             EEEESSSSCEEEEEST-T-----CEEEESSTTSSCEECGG
T ss_pred             EEEecCCCEEEEEeCC-C-----eEEEeCCCCcccEEcCc
Confidence            33333 4578887652 1     23333334578998764

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=91.90  E-value=0.74  Score=56.15  Aligned_cols=12  Identities=8%  Similarity=0.385  Sum_probs=8.7

Q ss_pred             eEeeCCCCCeEE
Q 010571            6 WHLELPYDLWVT   17 (507)
Q Consensus         6 ~~~d~~~~~W~~   17 (507)
                      |.+|+..+.|..
T Consensus      1252 y~~~~~~~~w~~ 1263 (3245)
T 3vkg_A         1252 YSVSIDDANWSL 1263 (3245)
T ss_dssp             EEECTTTCSEEE
T ss_pred             EEEECCCCeeee
Confidence            566777888874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=91.88  E-value=14  Score=38.60  Aligned_cols=186  Identities=12%  Similarity=0.100  Sum_probs=89.9

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++.+++.|+.+      ..+.++|+.++.-...-. +  .  ...-.++.+  ++..++.|+.+      ..+.++|+..
T Consensus       441 ~g~~l~sgs~D------g~v~vwd~~~~~~~~~~~-~--h--~~~v~~~~~s~~~~~l~s~s~D------~~i~iwd~~~  503 (694)
T 3dm0_A          441 DGQFALSGSWD------GELRLWDLAAGVSTRRFV-G--H--TKDVLSVAFSLDNRQIVSASRD------RTIKLWNTLG  503 (694)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEE-C--C--SSCEEEEEECTTSSCEEEEETT------SCEEEECTTS
T ss_pred             CCCEEEEEeCC------CcEEEEECCCCcceeEEe-C--C--CCCEEEEEEeCCCCEEEEEeCC------CEEEEEECCC
Confidence            56677777643      348899988875433211 1  0  111122222  44566666654      2477788654


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEE-cCc--EEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALH-ANR--YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--  252 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~-~~~--~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--  252 (507)
                      ..-..+...+  ...+....++.+ .++  .+++.|+.+     ..+.++|+.+..-...-     ........++.+  
T Consensus       504 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~sp  571 (694)
T 3dm0_A          504 ECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKLRSTL-----AGHTGYVSTVAVSP  571 (694)
T ss_dssp             CEEEEECSST--TSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECT
T ss_pred             CcceeeccCC--CCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcEEEEE-----cCCCCCEEEEEEeC
Confidence            4322222111  111111223333 222  356666654     45888998876544321     111112223333  


Q ss_pred             CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          253 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       253 ~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      ++.+++.||.++     .+.++|+.+..-  +..+..       ......+.+..+..+++.+. +    ..+.++|+.+
T Consensus       572 dg~~l~sg~~Dg-----~i~iwd~~~~~~--~~~~~~-------~~~v~~~~~sp~~~~l~~~~-~----~~i~iwd~~~  632 (694)
T 3dm0_A          572 DGSLCASGGKDG-----VVLLWDLAEGKK--LYSLEA-------NSVIHALCFSPNRYWLCAAT-E----HGIKIWDLES  632 (694)
T ss_dssp             TSSEEEEEETTS-----BCEEEETTTTEE--EECCBC-------SSCEEEEEECSSSSEEEEEE-T----TEEEEEETTT
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCce--EEEecC-------CCcEEEEEEcCCCcEEEEEc-C----CCEEEEECCC
Confidence            467777777543     367888877642  222211       11233334444444444443 2    3477788765


Q ss_pred             C
Q 010571          333 R  333 (507)
Q Consensus       333 ~  333 (507)
                      .
T Consensus       633 ~  633 (694)
T 3dm0_A          633 K  633 (694)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=91.85  E-value=0.86  Score=55.62  Aligned_cols=13  Identities=15%  Similarity=0.312  Sum_probs=7.1

Q ss_pred             EEEECCCCceeEe
Q 010571           56 QVFDLRSLAWSNL   68 (507)
Q Consensus        56 ~~~d~~t~~W~~~   68 (507)
                      |.+|+.++.|...
T Consensus      1252 y~~~~~~~~w~~W 1264 (3245)
T 3vkg_A         1252 YSVSIDDANWSLW 1264 (3245)
T ss_dssp             EEECTTTCSEEET
T ss_pred             EEEECCCCeeeeh
Confidence            3445556666553

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=91.84  E-value=2.4  Score=32.41  Aligned_cols=28  Identities=29%  Similarity=0.201  Sum_probs=13.5

Q ss_pred             HhhHhhhhhhhhhHHHHHHHHHHHHHhH
Q 010571          437 QGQLVAERSRCFKLEAQIAELQKMLESS  464 (507)
Q Consensus       437 ~~~~~~~~~~~~~~e~~~~e~~~~~~~~  464 (507)
                      ..+.+.+..+++.-|..+.++++...+.
T Consensus        44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~   71 (112)
T 1x79_B           44 SHQISALVLRAQASEILLEELQQGLSQA   71 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555555555544333

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.76  E-value=1.6  Score=42.65  Aligned_cols=149  Identities=13%  Similarity=0.135  Sum_probs=68.6

Q ss_pred             EEEEcCcCCCCCccCcEEEEEcCCC---cEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          154 LIIFGGEDRSRKLLNDVHFLDLETM---TWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       154 l~~~GG~~~~~~~~~~~~~~d~~t~---~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      +++.|+.+      ..+.+||+.+.   .+..............-++++... ++.+++.|+.+     ..|.+||+.+.
T Consensus       196 ~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~  264 (430)
T 2xyi_A          196 YLLSASDD------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNN  264 (430)
T ss_dssp             EEEEECTT------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCS
T ss_pred             eEEEEeCC------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence            66777653      35888998762   222110000001111122233333 44466666654     46889998765


Q ss_pred             c-EEeeeecCCCCCCCcceEEEEEC---CEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEE
Q 010571          230 E-WSQPEIKGDLVTGRAGHAGITID---ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII  305 (507)
Q Consensus       230 ~-W~~~~~~~~~p~~r~~~~~~~~~---~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~  305 (507)
                      . ...+..   .........++.++   ..+++.|+.++     .+.+||+.+..= .+..+.      .+......+..
T Consensus       265 ~~~~~~~~---~~~~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~~-~~~~~~------~h~~~v~~i~~  329 (430)
T 2xyi_A          265 NTSKPSHT---VDAHTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLKL-KLHSFE------SHKDEIFQVQW  329 (430)
T ss_dssp             CSSSCSEE---EECCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTTS-CSEEEE------CCSSCEEEEEE
T ss_pred             CCCcceeE---eecCCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCCC-CeEEee------cCCCCEEEEEE
Confidence            2 111000   00111122333342   34787877543     478888765310 011111      11122333333


Q ss_pred             -cCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          306 -EGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       306 -~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                       +.+..+++.||.+    ..+.++|+..
T Consensus       330 sp~~~~~l~s~~~d----~~i~iwd~~~  353 (430)
T 2xyi_A          330 SPHNETILASSGTD----RRLHVWDLSK  353 (430)
T ss_dssp             CSSCTTEEEEEETT----SCCEEEEGGG
T ss_pred             CCCCCCEEEEEeCC----CcEEEEeCCC
Confidence             3334577777755    3577777754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=91.65  E-value=18  Score=39.95  Aligned_cols=103  Identities=19%  Similarity=0.207  Sum_probs=53.8

Q ss_pred             CceE-EEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcE
Q 010571           53 SDVQ-VFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLC  129 (507)
Q Consensus        53 ~~~~-~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W  129 (507)
                      ..++ ++|+.++....+.  .                 .......+.+  +++.+++++..      ..++++|+.+++-
T Consensus       358 ~~l~~~~d~~~~~~~~l~--~-----------------~~~~~~~~~~SpDG~~la~~~~~------~~v~~~d~~tg~~  412 (1045)
T 1k32_A          358 GDFLGIYDYRTGKAEKFE--E-----------------NLGNVFAMGVDRNGKFAVVANDR------FEIMTVDLETGKP  412 (1045)
T ss_dssp             EEEEEEEETTTCCEEECC--C-----------------CCCSEEEEEECTTSSEEEEEETT------SEEEEEETTTCCE
T ss_pred             CceEEEEECCCCCceEec--C-----------------CccceeeeEECCCCCEEEEECCC------CeEEEEECCCCce
Confidence            4678 8898877654433  1                 1111222223  55555555432      3699999999887


Q ss_pred             EEeecCCCCCCCcccceEEEECCEEEEEcCcCC----CCCccCcEEEEEcCCCcEEEe
Q 010571          130 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR----SRKLLNDVHFLDLETMTWDAV  183 (507)
Q Consensus       130 ~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~----~~~~~~~~~~~d~~t~~W~~~  183 (507)
                      ..+...   ........+..-+++.+++++.+.    .....+.++.+|+.+.+...+
T Consensus       413 ~~~~~~---~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l  467 (1045)
T 1k32_A          413 TVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA  467 (1045)
T ss_dssp             EEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred             EEeccC---CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence            666421   111111111122455445554422    011235799999998775444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=91.58  E-value=7.8  Score=35.21  Aligned_cols=199  Identities=9%  Similarity=-0.038  Sum_probs=97.1

Q ss_pred             CCeEeeCCCC--CeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCc
Q 010571            4 GSWHLELPYD--LWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADK   78 (507)
Q Consensus         4 ~~~~~d~~~~--~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~   78 (507)
                      .+.++|+.+.  .|+.-.     +.....|++++. ++.+|+.+       .+.++.||+ ++.  |+.-...       
T Consensus        16 ~v~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~~~W~~~~~~-------   75 (276)
T 3no2_A           16 KIAIINKDTKEIVWEYPL-----EKGWECNSVAATKAGEILFSY-------SKGAKMITR-DGRELWNIAAPA-------   75 (276)
T ss_dssp             EEEEEETTTTEEEEEEEC-----CTTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSCEEEEEECCT-------
T ss_pred             EEEEEECCCCeEEEEeCC-----CccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCCEEEEEcCCC-------
Confidence            3467787544  354432     111123444443 66777732       245999999 553  5432210       


Q ss_pred             cccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCc-EEEeecCCCCCCC--cccceEEEECCEE
Q 010571           79 TEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVA--RGGHSVTLVGSRL  154 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~-W~~~~~~g~~p~~--r~~~~~~~~~~~l  154 (507)
                                 ...-+++... ++++++.....     ...++.+|+.... |+... .+..+.+  .........++.+
T Consensus        76 -----------~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~-~~~~~~~~~~~~~v~~~~~G~~  138 (276)
T 3no2_A           76 -----------GCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEF-ETGIERPHAQFRQINKNKKGNY  138 (276)
T ss_dssp             -----------TCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEE-CCSCSSGGGSCSCCEECTTSCE
T ss_pred             -----------CccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEec-cCCCCcccccccCceECCCCCE
Confidence                       1122333333 56666654321     2357888874432 33322 1111111  1112223334555


Q ss_pred             EEEcCcCCCCCccCcEEEEEcCCCc--EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--
Q 010571          155 IIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--  230 (507)
Q Consensus       155 ~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--  230 (507)
                      ++....      .+.+.+||+. ++  |+.-..  .     ..+++....++.++|++..+     +.+..||+.+++  
T Consensus       139 lv~~~~------~~~v~~~d~~-G~~~w~~~~~--~-----~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~  199 (276)
T 3no2_A          139 LVPLFA------TSEVREIAPN-GQLLNSVKLS--G-----TPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIV  199 (276)
T ss_dssp             EEEETT------TTEEEEECTT-SCEEEEEECS--S-----CCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEE
T ss_pred             EEEecC------CCEEEEECCC-CCEEEEEECC--C-----CccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEE
Confidence            554321      3469999987 44  654331  1     12345556666677776542     458999998665  


Q ss_pred             EEeeeecCCCCCCCc-ceE-EEEE-CCEEEEEe
Q 010571          231 WSQPEIKGDLVTGRA-GHA-GITI-DENWYIVG  260 (507)
Q Consensus       231 W~~~~~~~~~p~~r~-~~~-~~~~-~~~l~v~G  260 (507)
                      |+.-.  ...+..+. ..+ ++.. ++.+||..
T Consensus       200 w~~~~--~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          200 RRVNA--NDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEEG--GGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EEecC--CCCCCccccccccceEcCCCCEEEEe
Confidence            66532  11222222 223 3333 67888776

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=91.57  E-value=2.5  Score=34.56  Aligned_cols=42  Identities=24%  Similarity=0.271  Sum_probs=27.3

Q ss_pred             hhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571          445 SRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       445 ~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      ++..+.+.+|..++.+++...    ..++....+++.+..++.++.
T Consensus        70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~  115 (155)
T 2efr_A           70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY  115 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566667777777766665    556666777777776666654

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=91.52  E-value=2.2  Score=33.00  Aligned_cols=67  Identities=13%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHH
Q 010571          387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ  453 (507)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~  453 (507)
                      +......++.+..+.++.+..+-.-..+-+.+++.+++.+-.-++|+-.++.++...+...++.+..
T Consensus        16 L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~   82 (167)
T 4gkw_A           16 LKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQL   82 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3333444444444444433333333333344444444444444455555555555555444444433

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=91.51  E-value=11  Score=37.03  Aligned_cols=188  Identities=17%  Similarity=0.200  Sum_probs=97.5

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT  179 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~  179 (507)
                      ++++|+|-|.        ..|.||..+.+.....-. .+|  . --++....+++|+|-|.        ..+.||..+.+
T Consensus       158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~-gi~--~-iDAA~~~~g~~YfFkG~--------~y~rfd~~~~~  217 (460)
T 1qhu_A          158 DEGILFFQGN--------RKWFWDLTTGTKKERSWP-AVG--N-CTSALRWLGRYYCFQGN--------QFLRFNPVSGE  217 (460)
T ss_dssp             SSEEEEEETT--------EEEEEETTTTEEEEECCT-TSC--C-CSEEEEETTEEEEEETT--------EEEEECTTTCC
T ss_pred             CCeEEEEecc--------cEEEEecccceeecccCC-CCC--c-cchheeeCCceEEEECC--------EEEEEcCccCc
Confidence            6788988873        489999998866543221 122  2 34555567899999774        46667664432


Q ss_pred             ------------EEEeecCC------------C---CCCCCCCceEEEE-cCcEEEEEeCCCCCcCCCcEEEEECCCCcE
Q 010571          180 ------------WDAVEVTQ------------T---PPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       180 ------------W~~~~~~g------------~---~p~~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                                  |..++..|            .   .+.+....-++.. .++.+|+|-|       +..|+++.....+
T Consensus       218 v~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------~~yWR~~~~~~~~  290 (460)
T 1qhu_A          218 VPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------SHYWRLDTNRDGW  290 (460)
T ss_dssp             CCTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------TEEEECTTGGGCC
T ss_pred             ccCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------CEEEEEecCCCCc
Confidence                        21111100            0   0111112223333 4667999988       4566666543322


Q ss_pred             Eeeeec---CCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCC------CCCC--CCCCce
Q 010571          232 SQPEIK---GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGR------NPLA--SEGLSV  300 (507)
Q Consensus       232 ~~~~~~---~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~------~p~~--~~~~~~  300 (507)
                      ....+.   +.+|..  --++...++.+|+|=|.       .+|+|+..+. .+.++..|..      .|..  ..+.. 
T Consensus       291 ~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG~-------~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~ID-  359 (460)
T 1qhu_A          291 HSWPIAHQWPQGPST--VDAAFSWEDKLYLIQDT-------KVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVD-  359 (460)
T ss_dssp             CCEEGGGTCTTSCSS--CSEEEEETTEEEEEETT-------EEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCC-
T ss_pred             CccchhhhccCCCCC--CcEEEEECCeEEEEeCC-------EEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCccc-
Confidence            111111   223322  33555668899999652       5788886532 2222211110      1111  11122 


Q ss_pred             EEEEEcCceEEEEEcccCCCcCCeEEEEECC
Q 010571          301 CSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       301 ~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                      +++....++.+|+|-|      +..|.||..
T Consensus       360 AA~~~~~~~ktyfFkG------~~ywryd~~  384 (460)
T 1qhu_A          360 AAFVCPGSSRLHIMAG------RRLWWLDLK  384 (460)
T ss_dssp             EEECCTTCCEEEEEET------TEEEEEEGG
T ss_pred             EEEEeCCCCEEEEEEC------CEEEEEECC
Confidence            2223345567888877      568999976

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=91.37  E-value=13  Score=37.38  Aligned_cols=142  Identities=8%  Similarity=0.054  Sum_probs=67.9

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      +++.++.|+.+      ..+.+||.....-..+.   ...   ....++.+  ++..++.|+.+      ..+..||...
T Consensus       396 dg~~l~~~~~d------~~v~~~~~~~~~~~~~~---~~~---~~v~~~~~s~d~~~l~~~~~d------~~v~~w~~~~  457 (577)
T 2ymu_A          396 DGQTIASASDD------KTVKLWNRNGQLLQTLT---GHS---SSVWGVAFSPDDQTIASASDD------KTVKLWNRNG  457 (577)
T ss_dssp             TSSCEEEEETT------SEEEEECTTCCEEEEEE---CCS---SCEEEEEECTTSSEEEEEETT------SEEEEEETTS
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCCEEEEec---CCC---CCeEEEEECCCCCEEEEEcCC------CEEEEEECCC
Confidence            45566666542      24777875443333332   111   11122222  45566666543      2578888755


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCE
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DEN  255 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~  255 (507)
                      ..-..+..     ....-.+++...++.+++.|+.+     ..+.++|.....-..+.  +    ....-.++.+  +++
T Consensus       458 ~~~~~~~~-----~~~~v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~~~~~~--~----h~~~v~~l~~s~dg~  521 (577)
T 2ymu_A          458 QLLQTLTG-----HSSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLT--G----HSSSVRGVAFSPDGQ  521 (577)
T ss_dssp             CEEEEEEC-----CSSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSCEEEEEE--C----CSSCEEEEEECTTSS
T ss_pred             CEEEEEcC-----CCCCEEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCEEEEEe--C----CCCCEEEEEEcCCCC
Confidence            44433331     11112234444566677777654     35778886543333321  1    1111122233  556


Q ss_pred             EEEEeccCCCCCcceEEEEEcCcCe
Q 010571          256 WYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       256 l~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      +++.|+.++     .+.+||.....
T Consensus       522 ~l~s~~~dg-----~v~lwd~~~~~  541 (577)
T 2ymu_A          522 TIASASDDK-----TVKLWNRNGQL  541 (577)
T ss_dssp             CEEEEETTS-----EEEEECTTSCE
T ss_pred             EEEEEECcC-----EEEEEeCCCCE
Confidence            777776443     47778865443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=91.35  E-value=8.5  Score=35.22  Aligned_cols=63  Identities=11%  Similarity=0.101  Sum_probs=32.8

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCC-------cEEEeecCCCCCCCcccceEEEE--C--CEEEEEcCcCCCCCccCc
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETN-------LCGVMETSGKVPVARGGHSVTLV--G--SRLIIFGGEDRSRKLLND  169 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~-------~W~~~~~~g~~p~~r~~~~~~~~--~--~~l~~~GG~~~~~~~~~~  169 (507)
                      +.+++.|+.+.      .+.+||+.+.       .|..+..   ..........+.+  +  +.+++.|+.+      ..
T Consensus        71 ~~~l~s~~~dg------~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~  135 (351)
T 3f3f_A           71 GRIIASASYDK------TVKLWEEDPDQEECSGRRWNKLCT---LNDSKGSLYSVKFAPAHLGLKLACLGND------GI  135 (351)
T ss_dssp             CSEEEEEETTS------CEEEEEECTTSCTTSSCSEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETT------CE
T ss_pred             CCEEEEEcCCC------eEEEEecCCCcccccccCcceeee---ecccCCceeEEEEcCCCCCcEEEEecCC------Cc
Confidence            66777776532      3777777654       3444432   1111112222233  2  5566666643      35


Q ss_pred             EEEEEcCCC
Q 010571          170 VHFLDLETM  178 (507)
Q Consensus       170 ~~~~d~~t~  178 (507)
                      +.+||+.+.
T Consensus       136 v~iwd~~~~  144 (351)
T 3f3f_A          136 LRLYDALEP  144 (351)
T ss_dssp             EEEEECSST
T ss_pred             EEEecCCCh
Confidence            888888654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=91.35  E-value=12  Score=36.82  Aligned_cols=181  Identities=10%  Similarity=-0.030  Sum_probs=80.2

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCC----ceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSL----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  112 (507)
                      ...||+-|..     .+.+++||..++    +-.+.-.....    ....+     ..+-.+..|.-++ |||-.-.+..
T Consensus        95 r~~l~v~~l~-----s~~I~viD~~t~p~~p~~~k~ie~~~~----~~~~g-----~s~Ph~~~~~pdG-i~Vs~~g~~~  159 (462)
T 2ece_A           95 RRFLIVPGLR-----SSRIYIIDTKPNPREPKIIKVIEPEEV----KKVSG-----YSRLHTVHCGPDA-IYISALGNEE  159 (462)
T ss_dssp             SCEEEEEBTT-----TCCEEEEECCSCTTSCEEEEEECHHHH----HHHHC-----EEEEEEEEECSSC-EEEEEEEETT
T ss_pred             CCEEEEccCC-----CCeEEEEECCCCCCCceeeeeechhhc----ccccC-----CCcccceeECCCe-EEEEcCCCcC
Confidence            5667777663     477999998776    22221100000    00000     0122223333456 7774322222


Q ss_pred             CCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEc---------CcCCCC---CccCcEEEEEcCCC
Q 010571          113 SSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFG---------GEDRSR---KLLNDVHFLDLETM  178 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~G---------G~~~~~---~~~~~~~~~d~~t~  178 (507)
                      ......+.++|..|.+=...-..+..|.. .++-...-  ++.+|.--         |.....   .+.+.|++||+.++
T Consensus       160 g~~~g~v~vlD~~T~~v~~~~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          160 GEGPGGILMLDHYSFEPLGKWEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             SCSCCEEEEECTTTCCEEEECCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             CCCCCeEEEEECCCCeEEEEEccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence            23356799999998764433221222211 12212222  33444431         222221   34678999999886


Q ss_pred             cEEEeecCCC-CCCCCCCceEEE-E-cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeee
Q 010571          179 TWDAVEVTQT-PPAPRYDHSAAL-H-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       179 ~W~~~~~~g~-~p~~r~~~~~~~-~-~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      +-..--..|. ...||  |.... . .+.++||..-.+.....+.+++|....+.|....
T Consensus       239 k~~~tI~vg~~g~~P~--~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          239 KRIHSLTLGEENRMAL--ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             EEEEEEESCTTEEEEE--EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             cEeeEEecCCCCCccc--eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence            4322111110 00011  11111 1 2345666554222223356666555557787654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=91.28  E-value=9.4  Score=35.58  Aligned_cols=192  Identities=14%  Similarity=0.105  Sum_probs=96.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.+++.||.+     ..+.+||..++.-...-.....     .    .....+.  ...+..++.|.++-.       .
T Consensus        47 d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~~~~v-----~----~~~~~~~--~~s~s~D~~i~~w~~-------~  103 (343)
T 3lrv_A           47 DKWVCMCRCED-----GALHFTQLKDSKTITTITTPNP-----R----TGGEHPA--IISRGPCNRLLLLYP-------G  103 (343)
T ss_dssp             EEEEEEEEEET-----TEEEEEEESSSSCEEEEEEECC-----C----TTCCCCS--EEEECSTTEEEEEET-------T
T ss_pred             CCCEEEEECCC-----CcEEEEECCCCcEEEEEecCCc-----e----eeeeCCc--eEEecCCCeEEEEEc-------c
Confidence            46677777743     4588888887653222111100     0    0000011  222233566666643       2


Q ss_pred             ceEEEEECCCCcE-EEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          117 MIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       117 ~~~~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                      ..+..||..+..- .....    +....-.+++..   ++.+++.|+.+      ..+.+||+.+.+-.....   ....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~---~~~~  170 (343)
T 3lrv_A          104 NQITILDSKTNKVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNR------GTIGFQSYEDDSQYIVHS---AKSD  170 (343)
T ss_dssp             TEEEEEETTTCCEEEEEEC----CCSSCEEEEECCC---CCEEEEEETT------CCEEEEESSSSCEEEEEC---CCSS
T ss_pred             CceEEeecCCcceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCC------CcEEEEECCCCcEEEEEe---cCCC
Confidence            2467788877762 22221    111111111111   44566767753      358999998887644431   1112


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE--eeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCc
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS--QPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGC  268 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~--~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~  268 (507)
                      ....+++...++.+++.|+.+     ..+.+||+.+..-.  .+.  +  . ....-.++.+  ++..++.|+ ++    
T Consensus       171 ~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~~~~~~~~--~--~-h~~~v~~l~fs~~g~~l~s~~-~~----  235 (343)
T 3lrv_A          171 VEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPDQASSRFP--V--D-EEAKIKEVKFADNGYWMVVEC-DQ----  235 (343)
T ss_dssp             CCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTTSCCEECC--C--C-TTSCEEEEEECTTSSEEEEEE-SS----
T ss_pred             CceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCCCCccEEe--c--c-CCCCEEEEEEeCCCCEEEEEe-CC----
Confidence            223345555677677777765     46889998876532  211  1  0 1112233333  456666666 22    


Q ss_pred             ceEEEEEcCcCe
Q 010571          269 QETIVLNMTKLA  280 (507)
Q Consensus       269 ~d~~~~d~~~~~  280 (507)
                       .+.++|+.+..
T Consensus       236 -~v~iwd~~~~~  246 (343)
T 3lrv_A          236 -TVVCFDLRKDV  246 (343)
T ss_dssp             -BEEEEETTSST
T ss_pred             -eEEEEEcCCCC
Confidence             57889987653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=91.22  E-value=8.3  Score=34.88  Aligned_cols=227  Identities=9%  Similarity=0.043  Sum_probs=100.9

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCC
Q 010571           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSD  115 (507)
Q Consensus        36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  115 (507)
                      .++.+++.|+.+     ..+.+||+.++.-........                ......+...++.+++.|+.+.    
T Consensus        27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg----   81 (313)
T 3odt_A           27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYTGQ----------------GFLNSVCYDSEKELLLFGGKDT----   81 (313)
T ss_dssp             EETTEEEEEETT-----SEEEEEEESSSEEEEEEEECS----------------SCEEEEEEETTTTEEEEEETTS----
T ss_pred             cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeecCC----------------ccEEEEEECCCCCEEEEecCCC----
Confidence            445556666633     458889987765433322110                1111122222566677776532    


Q ss_pred             cceEEEEECCCCc-EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571          116 SMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       116 ~~~~~~~d~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~  194 (507)
                        .+.+++..+.. ...+.   .+........++.+++..++.|+.+      ..+..||..........   .   ...
T Consensus        82 --~i~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~---~---~~~  144 (313)
T 3odt_A           82 --MINGVPLFATSGEDPLY---TLIGHQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSLVYNLQA---H---NAS  144 (313)
T ss_dssp             --CEEEEETTCCTTSCC-C---EECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTEEEEEEEC---C---SSC
T ss_pred             --eEEEEEeeecCCCCccc---chhhcccCEEEEEecCCEEEEEeCC------CCEEEEcCCcEEEeccc---C---CCc
Confidence              26667665431 11111   1111112223333455566666643      35888883222222111   1   111


Q ss_pred             CceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEE-EECCEEEEEeccCCCCCcceEE
Q 010571          195 DHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       195 ~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~d~~  272 (507)
                      ..++.... ++..++.|+.+     ..+.+||..... ..+   . .+......+++ .-++. ++.|+.++     .+.
T Consensus       145 v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~-~~~---~-~~~~~~i~~~~~~~~~~-~~~~~~dg-----~i~  208 (313)
T 3odt_A          145 VWDAKVVSFSENKFLTASAD-----KTIKLWQNDKVI-KTF---S-GIHNDVVRHLAVVDDGH-FISCSNDG-----LIK  208 (313)
T ss_dssp             EEEEEEEETTTTEEEEEETT-----SCEEEEETTEEE-EEE---C-SSCSSCEEEEEEEETTE-EEEEETTS-----EEE
T ss_pred             eeEEEEccCCCCEEEEEECC-----CCEEEEecCceE-EEE---e-ccCcccEEEEEEcCCCe-EEEccCCC-----eEE
Confidence            12233333 34466666654     357788833211 111   1 11111112222 23556 66665433     588


Q ss_pred             EEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          273 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       273 ~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      +||+.+..-..  .+...      ......+.+..+.. ++.||.+    ..+..+|+.+.
T Consensus       209 i~d~~~~~~~~--~~~~~------~~~i~~~~~~~~~~-l~~~~~d----g~v~iwd~~~~  256 (313)
T 3odt_A          209 LVDMHTGDVLR--TYEGH------ESFVYCIKLLPNGD-IVSCGED----RTVRIWSKENG  256 (313)
T ss_dssp             EEETTTCCEEE--EEECC------SSCEEEEEECTTSC-EEEEETT----SEEEEECTTTC
T ss_pred             EEECCchhhhh--hhhcC------CceEEEEEEecCCC-EEEEecC----CEEEEEECCCC
Confidence            89987664322  11111      11223334443333 5556644    46788887654

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=91.22  E-value=3.6  Score=40.10  Aligned_cols=79  Identities=10%  Similarity=0.201  Sum_probs=37.5

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhh-hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR-CFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERAT  489 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~  489 (507)
                      -++..++.+.+.+.++.+++.|.+.+++.+...+.. .+++++..+++.+=-+.+.+-++++..+++.+.+..+++.+++
T Consensus        28 aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~e  107 (497)
T 3iox_A           28 AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELE  107 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444445555555555555555555555444322 1222332333322222233555566666666666666665443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=91.10  E-value=0.95  Score=31.99  Aligned_cols=16  Identities=6%  Similarity=-0.035  Sum_probs=6.4

Q ss_pred             HHHHHhhHhhhhhhhh
Q 010571          433 LSSVQGQLVAERSRCF  448 (507)
Q Consensus       433 ~~~~~~~~~~~~~~~~  448 (507)
                      |..++..+...+.+++
T Consensus        33 Ls~vr~~ni~~eskL~   48 (81)
T 1wt6_A           33 MEAIRTDNQNFASQLR   48 (81)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444333333

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.95  E-value=12  Score=36.01  Aligned_cols=196  Identities=13%  Similarity=0.071  Sum_probs=99.5

Q ss_pred             CCCeEeeCCC--CCeEEeccCCCCCCccccceEEEE---CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccC
Q 010571            3 SGSWHLELPY--DLWVTLPVSGARPSPRYKHAAAVF---DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDAD   77 (507)
Q Consensus         3 ~~~~~~d~~~--~~W~~~~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~   77 (507)
                      .++++|+...  ..|..+..   .+....-+++++.   .+.||+.+...  ..-..+++.+-...+|+.+......   
T Consensus        31 ~Gl~~~~~~~~g~~W~~~~~---~~~~~~v~~i~~dp~~~~~l~~g~~~g--~~g~gl~~s~D~G~tW~~~~~~~~~---  102 (394)
T 3b7f_A           31 KGAWFLASDPARRTWELRGP---VFLGHTIHHIVQDPREPERMLMAARTG--HLGPTVFRSDDGGGNWTEATRPPAF---  102 (394)
T ss_dssp             TEEEEEEECTTSCSEEEEEE---ESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCC---
T ss_pred             CceEEEECCCCCCCceECCc---cCCCCceEEEEECCCCCCeEEEEecCC--CCCccEEEeCCCCCCceECCccccC---
Confidence            4677888765  78998741   1112223444443   46788765321  0112477776667899987642110   


Q ss_pred             ccccCCccCCCCCc-----cce--eeEEE----CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCC------
Q 010571           78 KTEDSGLLEVLPPM-----SDH--CMVKW----GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPV------  140 (507)
Q Consensus        78 ~~~~~~~~~~p~~r-----~~~--~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~------  140 (507)
                              .....+     ..+  +++..    .+.||+.+.       ..-+++.+-...+|+.+......|.      
T Consensus       103 --------~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~  167 (394)
T 3b7f_A          103 --------NKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTG  167 (394)
T ss_dssp             --------CCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHC
T ss_pred             --------CCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCcccccccc
Confidence                    000111     111  22222    456776542       1237888777889998752111121      


Q ss_pred             -------CcccceEEEEC----CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCC---CCCCC-----CCCceEEEE
Q 010571          141 -------ARGGHSVTLVG----SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ---TPPAP-----RYDHSAALH  201 (507)
Q Consensus       141 -------~r~~~~~~~~~----~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g---~~p~~-----r~~~~~~~~  201 (507)
                             .......+.++    +.||+..+.       ..+++.+-...+|+.+....   .+|.+     ...+.++..
T Consensus       168 ~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~  240 (394)
T 3b7f_A          168 GEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQH  240 (394)
T ss_dssp             CC----CCCCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEEC
T ss_pred             ccccCCCCCCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEEC
Confidence                   01111223332    456665321       24777766778999875311   11211     122344443


Q ss_pred             cC--cEEEEEeCCCCCcCCCcEEEEECCCCcEEeee
Q 010571          202 AN--RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       202 ~~--~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      ..  +.||+..+       ..+++.+-...+|+.+.
T Consensus       241 ~~~~~~l~vg~~-------~gl~~s~D~G~tW~~~~  269 (394)
T 3b7f_A          241 PAAPDILYQQNH-------CGIYRMDRREGVWKRIG  269 (394)
T ss_dssp             SSSTTEEEEEET-------TEEEEEETTTTEEECGG
T ss_pred             CCCCCEEEEEcC-------CeEEEeCCCCCcceECC
Confidence            33  55666332       34888887888999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.93  E-value=1.2  Score=44.76  Aligned_cols=12  Identities=33%  Similarity=0.556  Sum_probs=4.9

Q ss_pred             EEEEECCCCcEE
Q 010571          119 VRFIDLETNLCG  130 (507)
Q Consensus       119 ~~~~d~~t~~W~  130 (507)
                      +..+|...+...
T Consensus        82 L~~L~Ls~N~l~   93 (487)
T 3oja_A           82 LRTLDLNNNYVQ   93 (487)
T ss_dssp             CCEEECCSSEEE
T ss_pred             CCEEEecCCcCC
Confidence            334444444333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=90.85  E-value=1  Score=32.54  Aligned_cols=44  Identities=11%  Similarity=0.218  Sum_probs=18.7

Q ss_pred             HHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHH
Q 010571          419 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE  462 (507)
Q Consensus       419 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~  462 (507)
                      ++..+..+.+.++.......++..++++++.++..+...++++.
T Consensus        22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~   65 (81)
T 1ic2_A           22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK   65 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333444444444444454444444444433333

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=90.63  E-value=11  Score=35.06  Aligned_cols=104  Identities=14%  Similarity=0.138  Sum_probs=55.5

Q ss_pred             CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE---CCEEEEEcccCCCCC
Q 010571           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW---GTKLLILGGHYKKSS  114 (507)
Q Consensus        38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~  114 (507)
                      +.+++.|+.+     ..+.+||+.++.-...-..                  ......++.+   ++.+++.|+.+.   
T Consensus        85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~l~s~~~dg---  138 (366)
T 3k26_A           85 HPLLAVAGSR-----GIIRIINPITMQCIKHYVG------------------HGNAINELKFHPRDPNLLLSVSKDH---  138 (366)
T ss_dssp             CEEEEEEETT-----CEEEEECTTTCCEEEEEES------------------CCSCEEEEEECSSCTTEEEEEETTS---
T ss_pred             CCEEEEecCC-----CEEEEEEchhceEeeeecC------------------CCCcEEEEEECCCCCCEEEEEeCCC---
Confidence            4677777743     4588999887653322111                  1111222222   556777776532   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                         .+.+||..+++-.....  ..........++.+  ++..++.|+.+      ..+.+||+.+.
T Consensus       139 ---~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~  193 (366)
T 3k26_A          139 ---ALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINSK  193 (366)
T ss_dssp             ---CEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCSH
T ss_pred             ---eEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCC------CCEEEEECCCC
Confidence               48899998876544321  11112222223333  34566666653      35888888764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=90.61  E-value=11  Score=35.04  Aligned_cols=143  Identities=14%  Similarity=0.132  Sum_probs=72.1

Q ss_pred             CEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCC
Q 010571           38 QKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSD  115 (507)
Q Consensus        38 ~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  115 (507)
                      +.+++.|+.+     ..+.+||..+...........                .......+.+  ++..++.|+.+     
T Consensus        54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~----------------h~~~v~~~~~~~~~~~l~s~~~d-----  107 (368)
T 3mmy_A           54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQM----------------HTGPVLDVCWSDDGSKVFTASCD-----  107 (368)
T ss_dssp             SEEEEEEETT-----SEEEEEEECTTSCEEEEEEEE----------------CSSCEEEEEECTTSSEEEEEETT-----
T ss_pred             ceEEEEECCC-----CcEEEEEcCCCCceeEEEecc----------------ccCCEEEEEECcCCCEEEEEcCC-----
Confidence            4788887743     458889988733322111110                1111222223  55566666543     


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEE---ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL---VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~---~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                       ..+.+||..+.......   ....+  -.++..   -++.+++.|+.+      ..+.+||+.+.+-...-.   .+  
T Consensus       108 -g~v~iwd~~~~~~~~~~---~~~~~--v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~---~~--  170 (368)
T 3mmy_A          108 -KTAKMWDLSSNQAIQIA---QHDAP--VKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMMVLQ---LP--  170 (368)
T ss_dssp             -SEEEEEETTTTEEEEEE---ECSSC--EEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSEEEE---CS--
T ss_pred             -CcEEEEEcCCCCceeec---cccCc--eEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEEEEe---cC--
Confidence             35889999988765543   11111  112222   245777777753      358899987765322211   11  


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ....++. .....+++.++ +     ..+.+|++....
T Consensus       171 ~~~~~~~-~~~~~~~~~~~-~-----~~i~~~~~~~~~  201 (368)
T 3mmy_A          171 ERCYCAD-VIYPMAVVATA-E-----RGLIVYQLENQP  201 (368)
T ss_dssp             SCEEEEE-EETTEEEEEEG-G-----GCEEEEECSSSC
T ss_pred             CCceEEE-ecCCeeEEEeC-C-----CcEEEEEecccc
Confidence            1112222 33443444333 2     457888887654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.59  E-value=16  Score=36.97  Aligned_cols=111  Identities=13%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             EEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          154 LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       154 l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      +++.|+.+      ..+.+||+.+.+-...-. +.......-.+++...+ +.+++.|+.+     ..+.+||+.+....
T Consensus       175 ~l~~~~~d------~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~  242 (615)
T 1pgu_A          175 RSMTVGDD------GSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSGEFL  242 (615)
T ss_dssp             EEEEEETT------TEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTCCEE
T ss_pred             EEEEEeCC------CcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCEe
Confidence            66776643      368889987765433221 11000001223344445 5577777754     46899998877654


Q ss_pred             eeeecCCCCCCCcceEEEEE-CCEEEEEeccCCCCCcceEEEEEcCcCeeE
Q 010571          233 QPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       233 ~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  282 (507)
                      ..-...... .......+.+ ++..++.|+.++     .+.+||+.+..-.
T Consensus       243 ~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~  287 (615)
T 1pgu_A          243 KYIEDDQEP-VQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKCV  287 (615)
T ss_dssp             EECCBTTBC-CCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEEE
T ss_pred             EEecccccc-cCCceEEEEEcCCCEEEEEcCCC-----cEEEEECCCCcEE
Confidence            421000001 1111122222 667777776442     4788998876544

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.49  E-value=4.7  Score=30.79  Aligned_cols=78  Identities=10%  Similarity=0.126  Sum_probs=48.5

Q ss_pred             hhhHHhhHHHHHHHHHhhHHHHh----hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh
Q 010571          388 RTDIDAIKEDKRVLELSLTEVRT----ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  463 (507)
Q Consensus       388 ~~~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~  463 (507)
                      ......|..+...|+.++.....    ....|+.+++.+....+.+.+.+.++...++.++....-.-..++.++.++-+
T Consensus         9 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~   88 (111)
T 2v66_B            9 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ   88 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence            34455566666666665554433    35557777777777777777777777777776666555555566666655544


Q ss_pred             HH
Q 010571          464 SQ  465 (507)
Q Consensus       464 ~~  465 (507)
                      +-
T Consensus        89 ai   90 (111)
T 2v66_B           89 AI   90 (111)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=90.44  E-value=2.6  Score=33.35  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=33.6

Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHHhHH-------HHHHHHHHHHHhHHHHHHHHHH
Q 010571          440 LVAERSRCFKLEAQIAELQKMLESSQ-------TIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       440 ~~~~~~~~~~~e~~~~e~~~~~~~~~-------~~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      +..-++....++..+.+.+.+|.+++       +++.++++++.+..+..+.++.
T Consensus        71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k  125 (158)
T 3tul_A           71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDK  125 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445666777777888888888777       7888888888877766665544

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=90.31  E-value=2.8  Score=41.79  Aligned_cols=26  Identities=23%  Similarity=0.396  Sum_probs=13.3

Q ss_pred             HhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010571          462 ESSQTIENEVQILRQQKSAFEQEMER  487 (507)
Q Consensus       462 ~~~~~~e~e~~~~~~~~~~~~~~~~~  487 (507)
                      ++.+++|.|+..+.++++.++-|+++
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          443 KKVEELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555543

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=90.28  E-value=1.5  Score=32.68  Aligned_cols=53  Identities=15%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES  463 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~  463 (507)
                      +..-|+..+++.++.+.+..++.++...+++.++.....++.++.+++.++++
T Consensus        31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q   83 (103)
T 4h22_A           31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555444444444444444433

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=90.18  E-value=5.3  Score=30.86  Aligned_cols=49  Identities=12%  Similarity=0.221  Sum_probs=22.9

Q ss_pred             ccchhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhH
Q 010571          385 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL  433 (507)
Q Consensus       385 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~  433 (507)
                      ..+..+.+..+++..++-..+.+.+.-..+|++.-....+++..++.|+
T Consensus        21 ~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~   69 (167)
T 4gkw_A           21 ESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAEL   69 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Confidence            3444555555555555544444444444444444444444444443333

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=90.17  E-value=3  Score=31.11  Aligned_cols=15  Identities=13%  Similarity=0.167  Sum_probs=6.0

Q ss_pred             HHHHHHHhHHHHHHH
Q 010571          470 EVQILRQQKSAFEQE  484 (507)
Q Consensus       470 e~~~~~~~~~~~~~~  484 (507)
                      ++-+.+.+..+++.+
T Consensus        68 ql~e~~dE~~Sl~~q   82 (96)
T 3q8t_A           68 QQLELDDELKSVENQ   82 (96)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333344444444433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=89.99  E-value=12  Score=34.56  Aligned_cols=145  Identities=16%  Similarity=0.142  Sum_probs=72.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.++.-...-..                  .......+.+  ++.+++.|+.+.   
T Consensus        76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~~~~------------------h~~~v~~~~~~~~~~~l~s~s~D~---  129 (319)
T 3frx_A           76 DGAYALSASWD-----KTLRLWDVATGETYQRFVG------------------HKSDVMSVDIDKKASMIISGSRDK---  129 (319)
T ss_dssp             TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC------------------CSSCEEEEEECTTSCEEEEEETTS---
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCCeeEEEcc------------------CCCcEEEEEEcCCCCEEEEEeCCC---
Confidence            44555566533     4588899988753221110                  1111222223  466777776533   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--------CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--------GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT  186 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--------~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~  186 (507)
                         .+.+||.....-..+.  +. .   .....+.+        ++.+++.||.+      ..+..+|+.+.+-...- .
T Consensus       130 ---~i~vwd~~~~~~~~~~--~h-~---~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~-~  193 (319)
T 3frx_A          130 ---TIKVWTIKGQCLATLL--GH-N---DWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEADF-I  193 (319)
T ss_dssp             ---CEEEEETTSCEEEEEC--CC-S---SCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEEEE-C
T ss_pred             ---eEEEEECCCCeEEEEe--cc-C---CcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhheee-c
Confidence               3777887654333322  11 0   01111111        22355556543      35888898776543321 1


Q ss_pred             CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcE
Q 010571          187 QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       187 g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      +.   ...-.+++...++.+++.||.+     ..+.++|+.+..-
T Consensus       194 ~h---~~~v~~~~~sp~g~~l~s~~~d-----g~i~iwd~~~~~~  230 (319)
T 3frx_A          194 GH---NSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKA  230 (319)
T ss_dssp             CC---CSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEE
T ss_pred             CC---CCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence            11   1111233444566677777765     4688999887653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=89.98  E-value=12  Score=34.67  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=52.3

Q ss_pred             cceEEEEECCCCcE-EEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCC--c-cCcEEEEEcCCCcEEEeecCCCCCC
Q 010571          116 SMIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK--L-LNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       116 ~~~~~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~--~-~~~~~~~d~~t~~W~~~~~~g~~p~  191 (507)
                      ...++++|+.++.. ..+.   . +   .....+...+.+++.+..+....  . ...++.+|  ++++..+...     
T Consensus       151 ~~~l~~~d~~~~~~~~~l~---~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-----  216 (347)
T 2gop_A          151 KTTFWIFDTESEEVIEEFE---K-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-----  216 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEE---E-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-----
T ss_pred             cceEEEEECCCCeEEeeec---C-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC-----
Confidence            35799999999887 6654   2 2   22233334444555454332111  2 44688888  7777766531     


Q ss_pred             CCCCceEEEEcCcEEEEEeCCCC---CcCCCcEEEEECCCCcEEee
Q 010571          192 PRYDHSAALHANRYLIVFGGCSH---SIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~i~GG~~~---~~~~~~i~~~d~~~~~W~~~  234 (507)
                        ...... ..++..+++.+...   ......++.+|  ++.+..+
T Consensus       217 --~~~~~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l  257 (347)
T 2gop_A          217 --VSFYAV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI  257 (347)
T ss_dssp             --ESEEEE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred             --cceeeE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence              111222 33443343433222   12345789998  6666654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.88  E-value=2.1  Score=30.53  Aligned_cols=26  Identities=15%  Similarity=0.241  Sum_probs=9.9

Q ss_pred             hHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          415 FREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       415 l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      |..+|+.+-..++-++.|+.+.++++
T Consensus        11 LE~KIq~avdtI~lLqmEieELKekN   36 (81)
T 2jee_A           11 LEAKVQQAIDTITLLQMEIEELKEKN   36 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334443333333333333333333

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=89.84  E-value=12  Score=34.42  Aligned_cols=194  Identities=14%  Similarity=0.075  Sum_probs=88.7

Q ss_pred             CCE-EEEEcCCCCCccCCceEEEEC-CCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCC
Q 010571           37 DQK-LYIVGGSRNGRFLSDVQVFDL-RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~-lyv~GG~~~~~~~~~~~~~d~-~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  114 (507)
                      ++. +++.|+.+     ..+.+||+ .++....+....              .  ...-.+++...+.+++.|+.+    
T Consensus        67 ~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~--------------~--~~~v~~l~~~~~~~l~s~~~d----  121 (342)
T 1yfq_A           67 NTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNNE--------------A--NLGICRICKYGDDKLIAASWD----  121 (342)
T ss_dssp             SSSEEEEEEETT-----SCEEEECSSSSSSEEECBSCC--------------C--CSCEEEEEEETTTEEEEEETT----
T ss_pred             CCCcEEEEEcCC-----CeEEEEEeccCCceEeccccC--------------C--CCceEEEEeCCCCEEEEEcCC----
Confidence            556 66667633     46889999 887654433200              0  111112222224455555532    


Q ss_pred             CcceEEEEECCCCc-------EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCC-Cc--EEEee
Q 010571          115 DSMIVRFIDLETNL-------CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET-MT--WDAVE  184 (507)
Q Consensus       115 ~~~~~~~~d~~t~~-------W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t-~~--W~~~~  184 (507)
                        ..+.+||+.+..       ...+.   .......-.++....+. ++.|+.+      ..+.+||+.+ ..  .....
T Consensus       122 --~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~  189 (342)
T 1yfq_A          122 --GLIEVIDPRNYGDGVIAVKNLNSN---NTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEE  189 (342)
T ss_dssp             --SEEEEECHHHHTTBCEEEEESCSS---SSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEE
T ss_pred             --CeEEEEcccccccccccccCCeee---EEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeee
Confidence              347777765400       11111   12222222233333445 5555432      3689999887 43  32222


Q ss_pred             cCCCCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCC------c-EEeeeecCCCCC---CCcceEEEEE-
Q 010571          185 VTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTN------E-WSQPEIKGDLVT---GRAGHAGITI-  252 (507)
Q Consensus       185 ~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~------~-W~~~~~~~~~p~---~r~~~~~~~~-  252 (507)
                      .    +....-.+++... ++.+++.|+.+     ..+.+++....      . -..+........   ....-.++.+ 
T Consensus       190 ~----~~~~~i~~i~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  260 (342)
T 1yfq_A          190 S----GLKYQIRDVALLPKEQEGYACSSID-----GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS  260 (342)
T ss_dssp             C----SCSSCEEEEEECSGGGCEEEEEETT-----SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred             c----CCCCceeEEEECCCCCCEEEEEecC-----CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence            1    1111122333444 55577777754     34556555443      1 111111000000   0112223333 


Q ss_pred             -CCEEEEEeccCCCCCcceEEEEEcCcCee
Q 010571          253 -DENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       253 -~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  281 (507)
                       ++.+++.|+.++     .+.+||+.+..-
T Consensus       261 ~~~~~l~~~~~dg-----~i~vwd~~~~~~  285 (342)
T 1yfq_A          261 PRHKFLYTAGSDG-----IISCWNLQTRKK  285 (342)
T ss_dssp             TTTCCEEEEETTS-----CEEEEETTTTEE
T ss_pred             CCCCEEEEecCCc-----eEEEEcCccHhH
Confidence             456677776443     478999887754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=89.76  E-value=8.5  Score=35.47  Aligned_cols=112  Identities=12%  Similarity=0.100  Sum_probs=56.7

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE----CCEEEEEcCcCCCCCccCcEEEEEc
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~----~~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                      ++++++.|+.+      ..+.+||+.++....+..   +......-.++.+    ++.+++.|+.+      ..+.++|+
T Consensus        24 ~g~~lasgs~D------~~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D------~~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSD------RSVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYD------RKVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETT------TEEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETT------SCEEEECC
T ss_pred             CCCEEEEEeCC------CeEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECC------CEEEEEEC
Confidence            45666677643      247788877765433321   1111111122333    24666777654      25888998


Q ss_pred             CCCcEEEeecCCCCCCCCCCceEEEEcC--cEEEEEeCCCCCcCCCcEEEEECCCC-cEEe
Q 010571          176 ETMTWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTN-EWSQ  233 (507)
Q Consensus       176 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~i~GG~~~~~~~~~i~~~d~~~~-~W~~  233 (507)
                      .+..|........  ....-.+++...+  +.+++.|+.+     ..+.++|+... .|..
T Consensus        89 ~~~~~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasgs~D-----~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           89 ENGTWEKSHEHAG--HDSSVNSVCWAPHDYGLILACGSSD-----GAISLLTYTGEGQWEV  142 (316)
T ss_dssp             SSSCCCEEEEECC--CSSCCCEEEECCTTTCSCEEEECSS-----SCEEEEEECSSSCEEE
T ss_pred             CCCcceEEEEccC--CCCceEEEEECCCCCCcEEEEEcCC-----CCEEEEecCCCCCcce
Confidence            8877654432111  1111123333333  4466777655     35777777664 4653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=89.58  E-value=22  Score=37.12  Aligned_cols=251  Identities=14%  Similarity=0.003  Sum_probs=120.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCE-EEEEcccCCC---
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTK-LLILGGHYKK---  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~~~---  112 (507)
                      +++.++|+-..++.....++++|+.++.........                 .+....+-. +++ ||+.......   
T Consensus       139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-----------------~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD-----------------VKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE-----------------EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC-----------------ceeccEEEe-CCCEEEEEEecCccccc
Confidence            455455433222222357999999999875542211                 112223334 554 5444322110   


Q ss_pred             ---CCCcceEEEEECCCCcE--EEeecCCCCCC--CcccceEEE-ECC-EEEEEcCcCCCCCccCcEEEEEcCCC--cEE
Q 010571          113 ---SSDSMIVRFIDLETNLC--GVMETSGKVPV--ARGGHSVTL-VGS-RLIIFGGEDRSRKLLNDVHFLDLETM--TWD  181 (507)
Q Consensus       113 ---~~~~~~~~~~d~~t~~W--~~~~~~g~~p~--~r~~~~~~~-~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~--~W~  181 (507)
                         ......++.++..+..=  ..+.   ..+.  +....+... -++ +|++......   ..+.++.+|+.+.  .|.
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~---~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVF---GAIPAQHHRYVGATVTEDDRFLLISAANST---SGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEE---SCSGGGCCSEEEEEECTTSCEEEEEEESSS---SCCEEEEEETTSTTCCCE
T ss_pred             ccccCCCcEEEEEECCCCcccceEEE---ecCCCCCeEEEEEEEcCCCCEEEEEEccCC---CCcEEEEEECCCCCCceE
Confidence               12245688888777542  1222   1121  111112222 133 4555433221   2368999998766  687


Q ss_pred             EeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC---cEEeeeecCCCCCCCcceEEEEECCEEEE
Q 010571          182 AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN---EWSQPEIKGDLVTGRAGHAGITIDENWYI  258 (507)
Q Consensus       182 ~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~---~W~~~~~~~~~p~~r~~~~~~~~~~~l~v  258 (507)
                      .+...     ...........++.+|+....+.  ....|+.+|+.+.   .|+.+..  ....  .. +....++.|++
T Consensus       275 ~l~~~-----~~~~~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~--~~~~--~~-~~s~~g~~lv~  342 (693)
T 3iuj_A          275 TVQGD-----LDADVSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIP--ERQQ--VL-TVHSGSGYLFA  342 (693)
T ss_dssp             EEECS-----SSSCEEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEEC--CCSS--CE-EEEEETTEEEE
T ss_pred             EEeCC-----CCceEEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEec--CCCC--EE-EEEEECCEEEE
Confidence            77521     11112223344666888765432  2457999998764   4777532  2111  11 33344566655


Q ss_pred             EeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEE-cCceEEEEEcccCCCcCCeEEEEECCCCCC
Q 010571          259 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII-EGEHHLVAFGGYNGKYNNEVFVMRLKPRDI  335 (507)
Q Consensus       259 ~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w  335 (507)
                      ..-.+   ....++++|+.......+.. +..      +. ...+.. .++..|++ ...+......+|.||+.+...
T Consensus       343 ~~~~~---g~~~l~~~d~~g~~~~~l~~-p~~------~~-~~~~~~~~d~~~l~~-~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          343 EYMVD---ATARVEQFDYEGKRVREVAL-PGL------GS-VSGFNGKHDDPALYF-GFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEET---TEEEEEEECTTSCEEEEECC-SSS------SE-EEECCCCTTCSCEEE-EEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEC---CeeEEEEEECCCCeeEEeec-CCC------ce-EEeeecCCCCCEEEE-EecCCCCCCEEEEEECCCCeE
Confidence            43222   24578899988766555532 111      11 111111 12233332 222223456788888866543

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=89.49  E-value=4.6  Score=30.64  Aligned_cols=30  Identities=30%  Similarity=0.440  Sum_probs=12.4

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571          447 CFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       447 ~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~  479 (507)
                      +++++.+|..+.++|+   ++..++++++++.+
T Consensus        73 vqeLqgEI~~Lnq~Lq---~a~ae~erlr~~~~  102 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQ---DASAEVERLRRENQ  102 (121)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHhhch
Confidence            4444444444444333   23334444444433

>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}

Probab=89.47  E-value=1.3  Score=37.23  Aligned_cols=11  Identities=27%  Similarity=0.117  Sum_probs=4.3

Q ss_pred             hHHHHHhhHhh
Q 010571          432 ELSSVQGQLVA  442 (507)
Q Consensus       432 e~~~~~~~~~~  442 (507)
                      ++...+.+++.
T Consensus        93 ql~akr~EL~a  103 (175)
T 3lay_A           93 QLISKRYEYNA  103 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333444433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=89.43  E-value=8.6  Score=39.09  Aligned_cols=191  Identities=10%  Similarity=-0.018  Sum_probs=94.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.+++..+..     +.+.+||+.++....+...+                 .  ...+..-+++.+++++.....  .
T Consensus       121 g~~~~~~s~~~-----~~~~l~d~~~g~~~~l~~~~-----------------~--~~~~~spDG~~la~~~~~~~~--~  174 (582)
T 3o4h_A          121 GEAVVFTGATE-----DRVALYALDGGGLRELARLP-----------------G--FGFVSDIRGDLIAGLGFFGGG--R  174 (582)
T ss_dssp             SSCEEEEEECS-----SCEEEEEEETTEEEEEEEES-----------------S--CEEEEEEETTEEEEEEEEETT--E
T ss_pred             CCeEEEEecCC-----CCceEEEccCCcEEEeecCC-----------------C--ceEEECCCCCEEEEEEEcCCC--C
Confidence            55555555432     23447899888766655321                 1  222333455555554433221  2


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      ..++++|+.++.+..+..   .+.. . ...+.- +++.++.+..+.    ...++.+|+.+++.. +.. +. .  ...
T Consensus       175 ~~i~~~d~~~g~~~~l~~---~~~~-~-~~~~~SpDG~~l~~~~~~~----~~~i~~~d~~~~~~~-~~~-~~-~--~~~  240 (582)
T 3o4h_A          175 VSLFTSNLSSGGLRVFDS---GEGS-F-SSASISPGMKVTAGLETAR----EARLVTVDPRDGSVE-DLE-LP-S--KDF  240 (582)
T ss_dssp             EEEEEEETTTCCCEEECC---SSCE-E-EEEEECTTSCEEEEEECSS----CEEEEEECTTTCCEE-ECC-CS-C--SHH
T ss_pred             eEEEEEcCCCCCceEeec---CCCc-c-ccceECCCCCEEEEccCCC----eeEEEEEcCCCCcEE-Ecc-CC-C--cCh
Confidence            459999999999887741   1111 1 112221 444433333221    246999999998887 321 11 1  000


Q ss_pred             ceEE--------EEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCC
Q 010571          196 HSAA--------LHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG  267 (507)
Q Consensus       196 ~~~~--------~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~  267 (507)
                      ...+        ...++.+++.+..+     ..+.+|++  +....      .+.......++. ++++++.++...  .
T Consensus       241 ~~~~~~~~~~~~~spdg~~~~~~~~~-----g~~~l~~~--g~~~~------~~~~~v~~~~~s-dg~~l~~~s~~~--~  304 (582)
T 3o4h_A          241 SSYRPTAITWLGYLPDGRLAVVARRE-----GRSAVFID--GERVE------APQGNHGRVVLW-RGKLVTSHTSLS--T  304 (582)
T ss_dssp             HHHCCSEEEEEEECTTSCEEEEEEET-----TEEEEEET--TEEEC------CCSSEEEEEEEE-TTEEEEEEEETT--E
T ss_pred             hhhhhccccceeEcCCCcEEEEEEcC-----CcEEEEEE--CCeec------cCCCceEEEEec-CCEEEEEEcCCC--C
Confidence            1111        34555566655443     24667776  44332      111111112223 777776655322  2


Q ss_pred             cceEEEEEcCcCeeEEe
Q 010571          268 CQETIVLNMTKLAWSIL  284 (507)
Q Consensus       268 ~~d~~~~d~~~~~W~~~  284 (507)
                      ...++.+|..+ ..+.+
T Consensus       305 p~~l~~~d~~~-~~~~l  320 (582)
T 3o4h_A          305 PPRIVSLPSGE-PLLEG  320 (582)
T ss_dssp             EEEEEEETTCC-EEECC
T ss_pred             CCeEEEEcCCC-ceEEE
Confidence            34678887765 44443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=89.24  E-value=3  Score=30.64  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010571          464 SQTIENEVQILRQQKSAFEQEMERATSV  491 (507)
Q Consensus       464 ~~~~e~e~~~~~~~~~~~~~~~~~~~~~  491 (507)
                      ..+++.....+..++..++..+.+.+++
T Consensus        58 l~eaEe~~~~L~~~K~eLE~~l~el~~r   85 (89)
T 3bas_A           58 MKQLEDKVEELLSKNYHLENEVARLKKL   85 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666655544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=89.09  E-value=15  Score=34.66  Aligned_cols=66  Identities=15%  Similarity=0.251  Sum_probs=38.9

Q ss_pred             CCEEEEEeccCC-----CCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEE
Q 010571          253 DENWYIVGGGDN-----NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV  327 (507)
Q Consensus       253 ~~~l~v~GG~~~-----~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~  327 (507)
                      ++++|+....++     ....+.++++|+.+.+-  +..++..      . .....+.+++.+||+.++      +.+.+
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~------~-p~~ia~spdg~~l~v~n~------~~v~v  329 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGR------D-ALSMTIDQQRNLMLTLDG------GNVNV  329 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECT------T-CCEEEEETTTTEEEEECS------SCEEE
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecC------C-eeEEEECCCCCEEEEeCC------CeEEE
Confidence            367888754111     11245799999988753  3333211      1 233345555667887553      77999


Q ss_pred             EECCCC
Q 010571          328 MRLKPR  333 (507)
Q Consensus       328 ~~~~~~  333 (507)
                      +|+.+.
T Consensus       330 ~D~~t~  335 (361)
T 2oiz_A          330 YDISQP  335 (361)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            998765

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=88.88  E-value=3.5  Score=37.21  Aligned_cols=75  Identities=21%  Similarity=0.292  Sum_probs=42.7

Q ss_pred             HhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhh----hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010571          409 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC----FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       409 ~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~  484 (507)
                      +++.++|+.+++.++.....|.+-    +..+..+++..    ..-+.-...+++.|.+..++..+..++..+++.++++
T Consensus        23 r~~~eql~~~i~~L~~~ap~W~~a----q~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~   98 (302)
T 3ibp_A           23 RQEQEQLQSRIQSLMQRAPVWLAA----QNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEE   98 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHChHHHHH----HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555554444332    22222333222    3334444666677777777777777888888888888


Q ss_pred             HHH
Q 010571          485 MER  487 (507)
Q Consensus       485 ~~~  487 (507)
                      .++
T Consensus        99 ier  101 (302)
T 3ibp_A           99 IER  101 (302)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=88.84  E-value=15  Score=34.08  Aligned_cols=160  Identities=11%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             EEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCC
Q 010571           34 AVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYK  111 (507)
Q Consensus        34 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~  111 (507)
                      ...++ +++.|+.+     ..+.+||+.++.+..+.....            .  ........+.+  ++.+++.|+.+.
T Consensus        21 ~~s~~-~las~~~D-----~~i~lw~~~~~~~~~~~~~~~------------~--~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X           21 DFSQG-ILATGSTD-----RKIKLVSVKYDDFTLIDVLDE------------T--AHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             EEETT-EEEEEESS-----SCEEEEECSSSCCEEEEEECT------------T--CCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCC-EEEEEcCC-----CEEEEEEecCCCeEEEEEEec------------C--CccCCEEEEEECCCCCEEEEEeCCC
Confidence            33455 66666633     458889988765544433210            0  01111222333  566777776532


Q ss_pred             CCCCcceEEEEECCCC-----cEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC--CcEEE
Q 010571          112 KSSDSMIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET--MTWDA  182 (507)
Q Consensus       112 ~~~~~~~~~~~d~~t~-----~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t--~~W~~  182 (507)
                            .+.+||....     .+..+..   +........++.+  ++..++.|+.+      ..+.++|+..  ..+..
T Consensus        81 ------~v~iw~~~~~~~~~~~~~~~~~---~~~h~~~V~~v~~sp~g~~las~s~D------~~v~iwd~~~~~~~~~~  145 (330)
T 2hes_X           81 ------TVSIWAKEESADRTFEMDLLAI---IEGHENEVKGVAWSNDGYYLATCSRD------KSVWIWETDESGEEYEC  145 (330)
T ss_dssp             ------CEEEEEC-------CCCEEEEE---EC----CEEEEEECTTSCEEEEEETT------SCEEEEECCTTCCCCEE
T ss_pred             ------cEEEEEcccCcCccccceeEEE---EcCCCCcEEEEEECCCCCEEEEEeCC------CEEEEEeccCCCCCeEE
Confidence                  3677776432     2222221   1111111122333  45666667654      2588888843  23443


Q ss_pred             eecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeee
Q 010571          183 VEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       183 ~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      +.....  ....-.++....++.+++.|+.+     ..+.++|..+..|..+.
T Consensus       146 ~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D-----~~i~iW~~~~~~~~~~~  191 (330)
T 2hes_X          146 ISVLQE--HSQDVKHVIWHPSEALLASSSYD-----DTVRIWKDYDDDWECVA  191 (330)
T ss_dssp             EEEECC--CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEE
T ss_pred             EEEecc--CCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCCeeEEE
Confidence            322111  11111122333455577777765     35777887777676543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=88.81  E-value=13  Score=33.59  Aligned_cols=226  Identities=14%  Similarity=0.087  Sum_probs=103.2

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  130 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~  130 (507)
                      +.|.++|+.+++....-....                ......++.+  +++.++.|+.+      ..+.++|..+++-.
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~----------------~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~  102 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQ----------------PGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRL  102 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCS----------------TTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEEecC----------------CCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeE
Confidence            468999999987655433221                1112223333  56677777653      24888999888644


Q ss_pred             EeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          131 VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       131 ~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      ....   ...  ....+....+.+++.|+.+      ..+..++..+.........+.   ...........++.+++.|
T Consensus       103 ~~~~---~h~--~~~~~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~  168 (318)
T 4ggc_A          103 RNMT---SHS--ARVGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSGH---SQEVCGLRWAPDGRHLASG  168 (318)
T ss_dssp             EEEE---CCS--SCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECC---SSCEEEEEECTTSSEEEEE
T ss_pred             EEec---Ccc--ceEEEeecCCCEEEEEecC------CceEeeecCCCceeEEEEcCc---cCceEEEEEcCCCCEEEEE
Confidence            3321   111  1122333445555555543      235555555443332221111   1111222333444466666


Q ss_pred             CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCC
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVK  288 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~  288 (507)
                      +.+     ..+.+||+.+..-..............-.+.+..  ++.++.+++....   ..+.++|.....-.......
T Consensus       169 ~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~i~lwd~~~~~~~~~~~~~  240 (318)
T 4ggc_A          169 GND-----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD---RHIRIWNVCSGACLSAVDAH  240 (318)
T ss_dssp             ETT-----SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT---CEEEEEETTTCCEEEEEECS
T ss_pred             ecC-----cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC---CEEEEEecccccccccccce
Confidence            654     3577888876431110000000000011111221  3344433322221   24667777666544322211


Q ss_pred             CCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          289 GRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       289 ~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                              .........+....+++.+|..   ...+.++|+.+.
T Consensus       241 --------~~v~~~~~~~~~~~~~~~sg~~---d~~i~iwd~~~~  274 (318)
T 4ggc_A          241 --------SQVCSILWSPHYKELISGHGFA---QNQLVIWKYPTM  274 (318)
T ss_dssp             --------SCEEEEEEETTTTEEEEEECTT---TCCEEEEETTTC
T ss_pred             --------eeeeeeeecccccceEEEEEcC---CCEEEEEECCCC
Confidence                    1122333444555666665543   345788887543

>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A

Probab=88.71  E-value=0.96  Score=33.16  Aligned_cols=41  Identities=12%  Similarity=0.242  Sum_probs=18.8

Q ss_pred             HHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010571          433 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS  479 (507)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~  479 (507)
                      +...-.+++..+..+.++|..+..++      +.-|+|+..|+.+++
T Consensus        45 i~~Qi~Emq~Ir~tvyeLE~~h~kmK------q~YEeEI~rLr~eLe   85 (92)
T 3vp9_A           45 MNQQLAEMQQIRNTVYERELTHRKMK------DAYEEEIKHLKLGLE   85 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence            44444444445555555554443222      234445555555444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.60  E-value=8.8  Score=31.23  Aligned_cols=27  Identities=15%  Similarity=0.303  Sum_probs=11.1

Q ss_pred             HHHHHhhccchhhHHhHHHHHhhHhhh
Q 010571          417 EKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       417 ~~~~~~~~~~~~~~~e~~~~~~~~~~~  443 (507)
                      ..+..+..++.....++.....++..+
T Consensus        44 ~~~~~l~~~~~~~~~e~~~L~~~l~~E   70 (154)
T 2ocy_A           44 EDYNTLKRELSDRDDEVKRLREDIAKE   70 (154)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            333333333334444444444444433

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=88.53  E-value=3  Score=31.08  Aligned_cols=55  Identities=20%  Similarity=0.235  Sum_probs=28.4

Q ss_pred             hHHHHHhhHhhhhhhhhhHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010571          432 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       432 e~~~~~~~~~~~~~~~~~~e~~~~e~~~~~~~~~----~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      +.....=+.+-++.+++++++.+.+++++.+...    .+......++.++..+..++.
T Consensus        24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~   82 (103)
T 4h22_A           24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK   82 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555556666666666665555544433    333344555555555555554

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=88.25  E-value=2.5  Score=43.23  Aligned_cols=8  Identities=13%  Similarity=0.410  Sum_probs=3.2

Q ss_pred             HHHHHHHh
Q 010571          481 FEQEMERA  488 (507)
Q Consensus       481 ~~~~~~~~  488 (507)
                      +.+|++++
T Consensus       572 ~~~ei~~l  579 (592)
T 1f5n_A          572 MKNEIQDL  579 (592)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33444433

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=88.13  E-value=4.2  Score=28.98  Aligned_cols=16  Identities=19%  Similarity=0.418  Sum_probs=6.7

Q ss_pred             hhHHHHHHhhccchhh
Q 010571          414 RFREKIDEVNSTHSEL  429 (507)
Q Consensus       414 ~l~~~~~~~~~~~~~~  429 (507)
                      .|+.+++++++++..+
T Consensus        24 lLqmEieELKekN~~L   39 (81)
T 2jee_A           24 LLQMEIEELKEKNNSL   39 (81)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3344444444444443

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=87.86  E-value=2.8  Score=29.60  Aligned_cols=10  Identities=10%  Similarity=0.302  Sum_probs=3.7

Q ss_pred             HhHHHHHHHH
Q 010571          476 QQKSAFEQEM  485 (507)
Q Consensus       476 ~~~~~~~~~~  485 (507)
                      .+++.+++++
T Consensus        59 ~e~~~l~~~~   68 (81)
T 1wt6_A           59 AHVRQLQERM   68 (81)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=87.86  E-value=7.4  Score=35.72  Aligned_cols=165  Identities=8%  Similarity=-0.008  Sum_probs=80.8

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEE----cccCC-
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLIL----GGHYK-  111 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~----GG~~~-  111 (507)
                      ++.||+....     ...+.+||+. ++...+.....            ..+..+....++.-++.||+.    |-... 
T Consensus        96 dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           96 QQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYA------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             TSCEEEEETT-----TTEEEEECTT-SCEEEEECEET------------TEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred             CCCEEEEECC-----CCEEEEECCC-CCEEEEEeccC------------CCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence            4567665321     2458889886 66655543211            001111122233336788885    43210 


Q ss_pred             ------CCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEe
Q 010571          112 ------KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAV  183 (507)
Q Consensus       112 ------~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~  183 (507)
                            .......++.||+.+++...+.   ....+   ..++.. ++ .||+....... ...+.+++|++........
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p---~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~  230 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHP---NGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDR  230 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSE---EEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEE
T ss_pred             cccccccccCCCeEEEEcCCCCcEEEEe---cCCCC---cceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCC
Confidence                  0112457999999888877663   11111   122222 33 57776432110 0125799999876543222


Q ss_pred             ecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          184 EVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       184 ~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                      ......+. -.-..++.-.++.||+..+       +.|++|++.......+
T Consensus       231 ~~~~~~~~-~~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~  273 (305)
T 3dr2_A          231 RHFASVPD-GLPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHI  273 (305)
T ss_dssp             EEEECCSS-SCCCSEEECTTSCEEECCS-------SEEEEECTTSCEEEEE
T ss_pred             eEEEECCC-CCCCeEEECCCCCEEEecC-------CcEEEECCCCCEEEEE
Confidence            21111111 1112345555666777542       3599999976655554

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=87.63  E-value=2.8  Score=30.65  Aligned_cols=27  Identities=11%  Similarity=0.170  Sum_probs=10.7

Q ss_pred             HHHHHHHHhhHHHHhhhhhhHHHHHHh
Q 010571          396 EDKRVLELSLTEVRTENSRFREKIDEV  422 (507)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~l~~~~~~~  422 (507)
                      ......+..+.....+..+|++.+...
T Consensus         9 ~~L~~aEeaL~~kq~~id~lke~~~q~   35 (94)
T 3jsv_C            9 QQLQQAEEALVAKQELIDKLKEEAEQH   35 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            333333344433333444444444333

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=87.61  E-value=21  Score=34.36  Aligned_cols=110  Identities=13%  Similarity=0.047  Sum_probs=58.1

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++.+++.|+.+      ..+.+||+.+..-...-   ..+.......++.+  ++.+++.|+.+      ..+.+||+.+
T Consensus       181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~  245 (437)
T 3gre_A          181 EKSLLVALTNL------SRVIIFDIRTLERLQII---ENSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRF  245 (437)
T ss_dssp             SCEEEEEEETT------SEEEEEETTTCCEEEEE---ECCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEEeCC------CeEEEEeCCCCeeeEEE---ccCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCC
Confidence            46677777643      35889999887643332   11111122233333  45677777654      3599999988


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEE----cCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALH----ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~----~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      .+....-.   .+....-.+++..    .++.+++.|+.+     ..+.+||+.++.-.
T Consensus       246 ~~~~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~  296 (437)
T 3gre_A          246 NVLIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQ  296 (437)
T ss_dssp             TEEEEEEB---CTTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEE
T ss_pred             ccEEEEEe---cCCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEE
Confidence            66543321   0111101111111    245466666543     35889998876533

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=87.58  E-value=20  Score=34.21  Aligned_cols=173  Identities=15%  Similarity=0.208  Sum_probs=92.0

Q ss_pred             cCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCC------CcEEEeecCCCCCCCcccceEEEECCEEEEEc
Q 010571           85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET------NLCGVMETSGKVPVARGGHSVTLVGSRLIIFG  158 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t------~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~G  158 (507)
                      +..|....-|+.|.+++.=|.+|=+..+..+ ..+-.+-+..      ..=+..-+ .......+..++-.+++.||+.-
T Consensus       278 ~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~P-Re~G~~yfs~~~~sp~~~vrr~i~-sey~~~AsEPCvkyYdgvLyLtT  355 (670)
T 3ju4_A          278 GLIPSVTEVHSFATIDNNGFAMGYHQGDVAP-REVGLFYFPDAFNSPSNYVRRQIP-SEYEPDASEPCIKYYDGVLYLIT  355 (670)
T ss_dssp             CSCTTCSEEEEEEECSSSCEEEEEEECSSSS-CEEEEEEETTTTTCTTCCEEEECC-GGGCTTEEEEEEEEETTEEEEEE
T ss_pred             ccccceeeeeeeeEecCCceEEEeccCCCCc-ceeeEEEecccccCCcceeeeech-hhhccccccchhhhhCCEEEEEe
Confidence            3445667789999999999999977666552 2333332221      11111110 11222233345556799999985


Q ss_pred             CcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCC----------CCCcC---CCcEE--E
Q 010571          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC----------SHSIF---FNDLH--V  223 (507)
Q Consensus       159 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~----------~~~~~---~~~i~--~  223 (507)
                      -.......-..+++-+.....|..+......  -......+.++ +.|||||--          .++.+   .....  +
T Consensus       356 Rgt~~~~~GS~L~rs~d~Gq~w~slrfp~nv--HhtnlPFakvg-D~l~mFgsERA~nEWE~G~pD~RY~a~yPRtF~~r  432 (670)
T 3ju4_A          356 RGTRGDRLGSSLHRSRDIGQTWESLRFPHNV--HHTTLPFAKVG-DDLIMFGSERAENEWEAGAPDDRYKASYPRTFYAR  432 (670)
T ss_dssp             EESCTTSCCCEEEEESSTTSSCEEEECTTCC--CSSCCCEEEET-TEEEEEEECSSTTCSSTTCCCCCSSCBCCEEEEEE
T ss_pred             cCcCCCCCcceeeeecccCCchhheeccccc--cccCCCcceeC-CEEEEEeccccccccccCCCcccccccCCceEEEE
Confidence            4433333455788888888899999742111  11112234554 459999853          12211   11222  2


Q ss_pred             EEC-----CCCcEEeeee---cCCCCCCCcceEEEEE-CCEE-EEEecc
Q 010571          224 LDL-----QTNEWSQPEI---KGDLVTGRAGHAGITI-DENW-YIVGGG  262 (507)
Q Consensus       224 ~d~-----~~~~W~~~~~---~~~~p~~r~~~~~~~~-~~~l-~v~GG~  262 (507)
                      .++     ..-.|..+..   .|.....-++..++++ ++-| |||||.
T Consensus       433 ~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgE  481 (670)
T 3ju4_A          433 LNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGE  481 (670)
T ss_dssp             EETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEB
T ss_pred             eecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCc
Confidence            232     2234555432   2445555566666666 4555 477774

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=87.53  E-value=6.9  Score=29.88  Aligned_cols=20  Identities=20%  Similarity=0.124  Sum_probs=8.4

Q ss_pred             hhhhHHHHHHHHHHHHHhHH
Q 010571          446 RCFKLEAQIAELQKMLESSQ  465 (507)
Q Consensus       446 ~~~~~e~~~~e~~~~~~~~~  465 (507)
                      +++.+..+++.-++.|+.++
T Consensus        46 qV~~L~~~~q~sE~~L~~Lq   65 (112)
T 1x79_B           46 QISALVLRAQASEILLEELQ   65 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444443

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=87.52  E-value=3  Score=40.75  Aligned_cols=38  Identities=16%  Similarity=0.311  Sum_probs=24.2

Q ss_pred             hHHHHHHHHHHH----HHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010571          449 KLEAQIAELQKM----LESSQTIENEVQILRQQKSAFEQEME  486 (507)
Q Consensus       449 ~~e~~~~e~~~~----~~~~~~~e~e~~~~~~~~~~~~~~~~  486 (507)
                      +|+..++.|+++    ++.++.|++-++.++.++++||-.+.
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555544444    45555777777777777777777653

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=87.42  E-value=1.8  Score=30.58  Aligned_cols=39  Identities=10%  Similarity=0.249  Sum_probs=20.2

Q ss_pred             hhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhh
Q 010571          410 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF  448 (507)
Q Consensus       410 ~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  448 (507)
                      ++...|+-.+.+++.+..+.++.|...+.++..+++.+.
T Consensus        26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe   64 (81)
T 3qh9_A           26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA   64 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            355555555666555555555555555544444444333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.08  E-value=2.8  Score=33.39  Aligned_cols=19  Identities=21%  Similarity=0.319  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHhHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~  484 (507)
                      .++.++.+++.+.+...++
T Consensus        86 ~lE~eL~~~r~e~~~ql~E  104 (129)
T 3tnu_B           86 ELEEALQKAKQDMARLLRE  104 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHH
Confidence            4555555555554444333

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=86.90  E-value=14  Score=36.50  Aligned_cols=188  Identities=14%  Similarity=0.081  Sum_probs=90.3

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeE------------eee
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSN------------LRL   70 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~------------~~~   70 (507)
                      +-.|.||...+....-.-.|   .+.. -++....+.+|+|-|       +..+.||+.+.+-..            ++.
T Consensus       167 ~~yw~yd~~~~~~~~~~w~g---i~~i-DAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~gyPk~is~~w~~c~~  235 (460)
T 1qhu_A          167 NRKWFWDLTTGTKKERSWPA---VGNC-TSALRWLGRYYCFQG-------NQFLRFNPVSGEVPPGYPLDVRDYFLSCPG  235 (460)
T ss_dssp             TEEEEEETTTTEEEEECCTT---SCCC-SEEEEETTEEEEEET-------TEEEEECTTTCCCCTTCCEEHHHHTSCCTT
T ss_pred             ccEEEEecccceeecccCCC---CCcc-chheeeCCceEEEEC-------CEEEEEcCccCcccCCCCcchhhcccCCCC
Confidence            34588998776544322111   2233 344445789999988       567888886653221            110


Q ss_pred             ccccccC--ccccCCccCCCC-CccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecC---CCCCCCcc
Q 010571           71 ETELDAD--KTEDSGLLEVLP-PMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS---GKVPVARG  143 (507)
Q Consensus        71 ~~~~~~~--~~~~~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~---g~~p~~r~  143 (507)
                      .+..+..  .+.+-....... ....-+++. .++++|+|-|.        ..|.||.....+......   ..+|..  
T Consensus       236 ~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~--------~yWR~~~~~~~~~p~~Is~~WpglP~~--  305 (460)
T 1qhu_A          236 RGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQGPST--  305 (460)
T ss_dssp             CCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT--------EEEECTTGGGCCCCEEGGGTCTTSCSS--
T ss_pred             CCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC--------EEEEEecCCCCcCccchhhhccCCCCC--
Confidence            0000000  000000000011 111223333 46899999773        266666544332221111   123332  


Q ss_pred             cceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEe-------e-cCCCCCCC--CCCceEEEE--cCcEEEEEeC
Q 010571          144 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAV-------E-VTQTPPAP--RYDHSAALH--ANRYLIVFGG  211 (507)
Q Consensus       144 ~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~-------~-~~g~~p~~--r~~~~~~~~--~~~~l~i~GG  211 (507)
                      --++...++.+|+|=|.        .+++|+..++ .+..       . ..| +|..  ...--++..  .++++|+|-|
T Consensus       306 IDAAf~~~~~~yfFkG~--------~yw~f~~~~g-~~~~~GyPK~I~~~lG-lp~~~~~~~IDAA~~~~~~~ktyfFkG  375 (460)
T 1qhu_A          306 VDAAFSWEDKLYLIQDT--------KVYVFLTKGG-YTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG  375 (460)
T ss_dssp             CSEEEEETTEEEEEETT--------EEEEEECSBS-CEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET
T ss_pred             CcEEEEECCeEEEEeCC--------EEEEEeCCCC-ceecCCCCeEHHHhcc-CCCccccCcccEEEEeCCCCEEEEEEC
Confidence            23344457899998653        4777875431 1111       1 012 2322  112223332  5678999988


Q ss_pred             CCCCcCCCcEEEEECCC
Q 010571          212 CSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       212 ~~~~~~~~~i~~~d~~~  228 (507)
                             +..|+||...
T Consensus       376 -------~~ywryd~~~  385 (460)
T 1qhu_A          376 -------RRLWWLDLKS  385 (460)
T ss_dssp             -------TEEEEEEGGG
T ss_pred             -------CEEEEEECCC
Confidence                   6799999864

>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*

Probab=86.78  E-value=3.7  Score=39.82  Aligned_cols=47  Identities=11%  Similarity=0.074  Sum_probs=27.1

Q ss_pred             chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhH
Q 010571          387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL  433 (507)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~  433 (507)
                      |.+++...+....+++..+.+....+....+.+..++......++..
T Consensus        86 L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~  132 (461)
T 3ghg_B           86 LLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQV  132 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             HHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCC
Confidence            44555566666666666666655555555555666555554444433

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=86.73  E-value=2.2  Score=31.21  Aligned_cols=15  Identities=7%  Similarity=0.311  Sum_probs=6.2

Q ss_pred             hhHHHHHHhhccchh
Q 010571          414 RFREKIDEVNSTHSE  428 (507)
Q Consensus       414 ~l~~~~~~~~~~~~~  428 (507)
                      .|...++..++-+..
T Consensus         6 ~L~~~L~~aEeaL~~   20 (94)
T 3jsv_C            6 DLRQQLQQAEEALVA   20 (94)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344444444444333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=86.29  E-value=7.5  Score=38.07  Aligned_cols=57  Identities=11%  Similarity=0.081  Sum_probs=28.1

Q ss_pred             chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhh
Q 010571          387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE  443 (507)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~  443 (507)
                      +...++.|+....++...-...++-...|+..+...+.++.+.+..+++...++++.
T Consensus        98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~  154 (464)
T 1m1j_B           98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELH  154 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence            445566666666666554444444444444444444444444443344444444333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.28  E-value=2.4  Score=33.83  Aligned_cols=19  Identities=26%  Similarity=0.382  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHHhHHHHHHH
Q 010571          466 TIENEVQILRQQKSAFEQE  484 (507)
Q Consensus       466 ~~e~e~~~~~~~~~~~~~~  484 (507)
                      .++.++.+++.+.+...++
T Consensus        88 ~lE~eL~~~r~em~~ql~E  106 (131)
T 3tnu_A           88 SVEEQLAQLRCEMEQQNQE  106 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555555555555444443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=86.16  E-value=26  Score=34.11  Aligned_cols=121  Identities=17%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCC---C
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYK---K  112 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~---~  112 (507)
                      +..+|+.-....... +.+.++|+.+++-...-..+                  ..-+.+..- +..+|+.--...   .
T Consensus        84 ~~~vyV~n~~~~~~~-~~VsVID~~t~~vv~~I~vG------------------~~Pgia~SpDgk~lyVan~~~~~~~~  144 (426)
T 3c75_H           84 ARRVYIQDPAHFAAI-TQQFVIDGSTGRILGMTDGG------------------FLPHPVAAEDGSFFAQASTVFERIAR  144 (426)
T ss_dssp             TTEEEEEECTTTCSS-EEEEEEETTTTEEEEEEEEC------------------SSCEEEECTTSSCEEEEEEEEEETTE
T ss_pred             CCEEEEECCCcCCCC-CeEEEEECCCCEEEEEEECC------------------CCCceEECCCCCEEEEEecccccccc
Confidence            456777654221111 68999999988654333222                  111222222 456777631100   0


Q ss_pred             CCCcceEEEEECCCCcEEE-eecCCCCC--CCcccceEEE--ECCEEEEEcCcCCCCCccCcEEEEEcCCCcEE
Q 010571          113 SSDSMIVRFIDLETNLCGV-METSGKVP--VARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWD  181 (507)
Q Consensus       113 ~~~~~~~~~~d~~t~~W~~-~~~~g~~p--~~r~~~~~~~--~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~  181 (507)
                      ....+.+.+||+.+++-.. +...+...  ....-+.+++  -+.++|+..-.     ..+.+.++|+.+++-.
T Consensus       145 G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          145 GKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeEE
Confidence            0114569999999986543 22110000  0011122222  24478876321     1457999999887643

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=86.10  E-value=2.9  Score=29.73  Aligned_cols=27  Identities=19%  Similarity=0.484  Sum_probs=11.6

Q ss_pred             hhHHHHHHhhccchhhHHhHHHHHhhH
Q 010571          414 RFREKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       414 ~l~~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      .+.+++++.+..+.++++.++..+.++
T Consensus        10 ~~~~klq~~E~rN~~Le~~v~~le~~L   36 (79)
T 3cvf_A           10 ETQQKVQDLETRNAELEHQLRAMERSL   36 (79)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444444444444444444333333

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=86.05  E-value=20  Score=32.61  Aligned_cols=195  Identities=10%  Similarity=0.066  Sum_probs=89.6

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCC--CcEEEeecCCCCCCCcccceEEEE----CCEEEEEcCcCCCCCccCcEEEE
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLV----GSRLIIFGGEDRSRKLLNDVHFL  173 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t--~~W~~~~~~g~~p~~r~~~~~~~~----~~~l~~~GG~~~~~~~~~~~~~~  173 (507)
                      ++.+++.|+.+      ..+.+||..+  ..+.....   +......-.++.+    ++.+++.|+.+      ..+.+|
T Consensus        22 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~d------g~v~vw   86 (351)
T 3f3f_A           22 YGRHVATCSSD------QHIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYD------KTVKLW   86 (351)
T ss_dssp             SSSEEEEEETT------SEEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETT------SCEEEE
T ss_pred             CCCEEEEeeCC------CeEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCC------CeEEEE
Confidence            45566666643      2366676664  34444331   1111122223333    25677777754      258888


Q ss_pred             EcCCC-------cEEEeecCCCCCCCCCCceEEEEcC--cEEEEEeCCCCCcCCCcEEEEECCCCc----EEeeee---c
Q 010571          174 DLETM-------TWDAVEVTQTPPAPRYDHSAALHAN--RYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEI---K  237 (507)
Q Consensus       174 d~~t~-------~W~~~~~~g~~p~~r~~~~~~~~~~--~~l~i~GG~~~~~~~~~i~~~d~~~~~----W~~~~~---~  237 (507)
                      |+.+.       .|..+.....  ....-.+++...+  +.+++.|+.+     ..+.+||+.+..    |.....   .
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLND--SKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             ecCCCcccccccCcceeeeecc--cCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChHHhcccccccccccc
Confidence            88664       3343332111  1111223333333  4466777654     458888876643    322110   0


Q ss_pred             CCCCCC-CcceEEEEE-----CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCce--
Q 010571          238 GDLVTG-RAGHAGITI-----DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH--  309 (507)
Q Consensus       238 ~~~p~~-r~~~~~~~~-----~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~--  309 (507)
                      ...+.. .....++.+     ++.++++|+.++     .+..++........+..+...      ......+.+..+.  
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h------~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGH------KSLIRSISWAPSIGR  228 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCCC------CSCEEEEEECCCSSC
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCCC------CcceeEEEECCCCCC
Confidence            111111 111122222     256777776442     234455555555444333221      1223333444443  


Q ss_pred             --EEEEEcccCCCcCCeEEEEECC
Q 010571          310 --HLVAFGGYNGKYNNEVFVMRLK  331 (507)
Q Consensus       310 --~l~v~GG~~~~~~~~v~~~~~~  331 (507)
                        .+++.|+.++    .+..+|+.
T Consensus       229 ~~~~l~s~~~dg----~i~iwd~~  248 (351)
T 3f3f_A          229 WYQLIATGCKDG----RIRIFKIT  248 (351)
T ss_dssp             SSEEEEEEETTS----CEEEEEEE
T ss_pred             cceEEEEEcCCC----eEEEEeCC
Confidence              5777777653    45666654

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=86.00  E-value=8.4  Score=31.05  Aligned_cols=34  Identities=12%  Similarity=0.150  Sum_probs=15.4

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAER  444 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  444 (507)
                      +...++.++..++.++.+..+.++.+++++..++
T Consensus        76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq  109 (152)
T 3a7p_A           76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGT  109 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444433

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=85.90  E-value=8.8  Score=28.39  Aligned_cols=59  Identities=22%  Similarity=0.343  Sum_probs=28.8

Q ss_pred             hHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhh
Q 010571          390 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF  448 (507)
Q Consensus       390 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  448 (507)
                      ..+.++.+...++..+.....+..+|+..+..-...-.+.++++..+..+++.+-..++
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF   64 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF   64 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555554444444455555555554444444444444445445544444333

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=85.90  E-value=1.8  Score=32.33  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=19.8

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHHhhHhh
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQGQLVA  442 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~  442 (507)
                      +...++++|+.++.+...+++++...+.+++.
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~   44 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER   44 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666777666666666666555555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=85.55  E-value=23  Score=32.89  Aligned_cols=259  Identities=10%  Similarity=0.078  Sum_probs=125.5

Q ss_pred             CCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCC
Q 010571           11 PYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLP   89 (507)
Q Consensus        11 ~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~   89 (507)
                      ....|+.+..    |....-.++... .+.+|++|- .     ..++.-.-.-.+|+.+.....              .+
T Consensus        23 ~g~~W~~~~~----~~~~~~~~v~~~~~~~~~~~G~-~-----g~i~~s~DgG~tW~~~~~~~~--------------~~   78 (327)
T 2xbg_A           23 DYNPWEAIQL----PTTATILDMSFIDRHHGWLVGV-N-----ATLMETRDGGQTWEPRTLVLD--------------HS   78 (327)
T ss_dssp             SSCCEEEEEC----SCSSCEEEEEESSSSCEEEEET-T-----TEEEEESSTTSSCEECCCCCS--------------CC
T ss_pred             CCCCceEeec----CCCCcEEEEEECCCCcEEEEcC-C-----CeEEEeCCCCCCCeECCCCCC--------------CC
Confidence            3578988863    322222333333 566787653 1     124333222358988753210              11


Q ss_pred             CccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEE-ECCEEEEEcCcCCCCCccC
Q 010571           90 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLN  168 (507)
Q Consensus        90 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~l~~~GG~~~~~~~~~  168 (507)
                      .....+++..++.+|+.|..       ..++.-+-.-.+|+.+......|..  .+.++. -++.+|+.|..       .
T Consensus        79 ~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~-------g  142 (327)
T 2xbg_A           79 DYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGS--PRLIKALGNGSAEMITNV-------G  142 (327)
T ss_dssp             CCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSC--EEEEEEEETTEEEEEETT-------C
T ss_pred             CccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCC--eEEEEEECCCCEEEEeCC-------c
Confidence            22334445557788887531       1244433235689998632112221  233333 35688877642       1


Q ss_pred             cEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECC-CCcEEeeeecCCCCCCCcce
Q 010571          169 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       169 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~  247 (507)
                      .+++-+-.-.+|+.+..    +.+...+.++...++.++++|-.      ..+++-+-. ..+|+.+..    +.+...+
T Consensus       143 ~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~~~~----~~~~~~~  208 (327)
T 2xbg_A          143 AIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEPHNR----TTSRRLH  208 (327)
T ss_dssp             CEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEEEEC----CSSSCEE
T ss_pred             cEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeECCC----CCCCccc
Confidence            24443323568999863    22233345555556656666532      234444322 568998742    2333444


Q ss_pred             EEEEE-CCEEEEEeccCCCCCcceEEEEEcC-cCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeE
Q 010571          248 AGITI-DENWYIVGGGDNNNGCQETIVLNMT-KLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEV  325 (507)
Q Consensus       248 ~~~~~-~~~l~v~GG~~~~~~~~d~~~~d~~-~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v  325 (507)
                      .++.. ++.+|+++. .+     .+++.+.. ..+|+.+...+    .+. +.....+...+...++++|+..     .+
T Consensus       209 ~~~~~~~g~~~~~~~-~G-----~~~~s~~D~G~tW~~~~~~~----~~~-~~~~~~v~~~~~~~~~~~g~~g-----~i  272 (327)
T 2xbg_A          209 NMGFTPDGRLWMIVN-GG-----KIAFSDPDNSENWGELLSPL----RRN-SVGFLDLAYRTPNEVWLAGGAG-----AL  272 (327)
T ss_dssp             EEEECTTSCEEEEET-TT-----EEEEEETTEEEEECCCBCTT----SSC-CSCEEEEEESSSSCEEEEESTT-----CE
T ss_pred             eeEECCCCCEEEEeC-Cc-----eEEEecCCCCCeeEeccCCc----ccC-CcceEEEEecCCCEEEEEeCCC-----eE
Confidence            44433 467777653 11     24444333 56898764321    111 1122233333345677777622     24


Q ss_pred             EEEECCCCCCCCCc
Q 010571          326 FVMRLKPRDIPRPK  339 (507)
Q Consensus       326 ~~~~~~~~~w~~~~  339 (507)
                      +.-.-.-..|....
T Consensus       273 ~~S~DgG~tW~~~~  286 (327)
T 2xbg_A          273 LCSQDGGQTWQQDV  286 (327)
T ss_dssp             EEESSTTSSCEECG
T ss_pred             EEeCCCCcccEEcC
Confidence            33222345776543

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=85.47  E-value=3.4  Score=29.25  Aligned_cols=10  Identities=10%  Similarity=0.777  Sum_probs=3.9

Q ss_pred             HHHHHHHHHH
Q 010571          467 IENEVQILRQ  476 (507)
Q Consensus       467 ~e~e~~~~~~  476 (507)
                      +++.++.+++
T Consensus        58 l~~ni~~lk~   67 (78)
T 3iv1_A           58 VDKNIELLKK   67 (78)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333433333

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=85.42  E-value=25  Score=33.22  Aligned_cols=112  Identities=12%  Similarity=0.010  Sum_probs=56.5

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCC--CCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEc
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP--VARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p--~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                      ++..++.|+.+.      .+.+||+.++.-..........  .......++.+  ++.+++.|+.+      ..+.++|+
T Consensus       260 ~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~  327 (380)
T 3iz6_a          260 DGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDT  327 (380)
T ss_dssp             TSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEET
T ss_pred             CCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEEC
Confidence            566777776532      3889999887644432110100  01111122333  45666666643      35999998


Q ss_pred             CCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC
Q 010571          176 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT  228 (507)
Q Consensus       176 ~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~  228 (507)
                      .+..-......-.......-.+++...++.+++.||.++     .+.++++..
T Consensus       328 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-----~i~iW~~~~  375 (380)
T 3iz6_a          328 LLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-----NLKIWAFSG  375 (380)
T ss_dssp             TTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-----CEEEEECCS
T ss_pred             CCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-----CEEEEecCC
Confidence            876654322100001111122334445666777887653     466666553

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=85.40  E-value=4.2  Score=41.56  Aligned_cols=15  Identities=13%  Similarity=0.417  Sum_probs=7.4

Q ss_pred             HHHHHHHhHHHHHHH
Q 010571          470 EVQILRQQKSAFEQE  484 (507)
Q Consensus       470 e~~~~~~~~~~~~~~  484 (507)
                      +...+++|++.|.++
T Consensus       568 ~~~~~~~ei~~l~~~  582 (592)
T 1f5n_A          568 ESRIMKNEIQDLQTK  582 (592)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            344555555555444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=85.35  E-value=38  Score=35.20  Aligned_cols=125  Identities=13%  Similarity=0.037  Sum_probs=68.7

Q ss_pred             eeeEEECCEEEEEcccCCCCCCcceEEEEECCCCc--EEEeecCCCC--CC---CcccceEEEECCEEEEEcCcCCCCCc
Q 010571           94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSGKV--PV---ARGGHSVTLVGSRLIIFGGEDRSRKL  166 (507)
Q Consensus        94 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~--p~---~r~~~~~~~~~~~l~~~GG~~~~~~~  166 (507)
                      .+-++.++.||+...       ...++.+|..|++  |+.-......  +.   .....+.++.++.||+...       
T Consensus        60 ~~P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  125 (668)
T 1kv9_A           60 ATPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (668)
T ss_dssp             CCCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             cCCEEECCEEEEECC-------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------
Confidence            344567999999865       3358999988774  8764311000  00   0011234556788877532       


Q ss_pred             cCcEEEEEcCCCc--EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc--EEee
Q 010571          167 LNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP  234 (507)
Q Consensus       167 ~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~~  234 (507)
                      ...++.||..|++  |+..... .........+.++. ++.+|+..+.........++.||+.++.  |+.-
T Consensus       126 dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          126 DGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             TSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            2469999998875  8765421 11111111222333 6656553322221233579999998875  8763

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=85.22  E-value=18  Score=31.32  Aligned_cols=155  Identities=13%  Similarity=0.090  Sum_probs=78.1

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccC
Q 010571           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHY  110 (507)
Q Consensus        33 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  110 (507)
                      ++...+.+|+|=|       ..+|+++.....+.........          .. .+..... +...  ++++|+|-|. 
T Consensus        29 i~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~w----------p~-Lp~~iDA-a~~~~~~~~iyfFkG~-   88 (207)
T 1pex_A           29 ITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFW----------PE-LPNRIDA-AYEHPSHDLIFIFRGR-   88 (207)
T ss_dssp             EEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHC----------TT-SCSSCCE-EEEETTTTEEEEEETT-
T ss_pred             EEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhc----------cC-CCCCccE-EEEeccCCcEEEEccC-
Confidence            4456899999977       4477776654333221111100          11 1122222 2223  5899999773 


Q ss_pred             CCCCCcceEEEEECCCCc---EEEeecCCCCCCCcccc-eEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEee
Q 010571          111 KKSSDSMIVRFIDLETNL---CGVMETSGKVPVARGGH-SVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  184 (507)
Q Consensus       111 ~~~~~~~~~~~~d~~t~~---W~~~~~~g~~p~~r~~~-~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~  184 (507)
                             .+|+|+-.+-.   =+.+...| +|.....- ++...  ++++|+|-|.        ..+.||..+.+-..-.
T Consensus        89 -------~~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~~~d~gy  152 (207)
T 1pex_A           89 -------KFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDY  152 (207)
T ss_dssp             -------EEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSC
T ss_pred             -------EEEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeCC--------EEEEEeCcCccccCCC
Confidence                   37777643211   11222111 33211122 22222  3699999763        5889988654321000


Q ss_pred             cC------CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          185 VT------QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       185 ~~------g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      +.      ..+| ... .++. ..++.+|+|-|       +..|+||..+..-..
T Consensus       153 Pr~i~~~~~Gip-~~i-DaAf-~~~g~~YfFkg-------~~y~rf~~~~~~v~~  197 (207)
T 1pex_A          153 PRLIEEDFPGIG-DKV-DAVY-EKNGYIYFFNG-------PIQFEYSIWSNRIVR  197 (207)
T ss_dssp             CCBHHHHSTTSC-SCC-SEEE-EETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             CccHHHcCCCCC-CCc-cEEE-EcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence            00      0122 222 2333 34778999988       678999987766543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=85.12  E-value=26  Score=33.05  Aligned_cols=181  Identities=11%  Similarity=0.021  Sum_probs=89.2

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEe
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  132 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~  132 (507)
                      ..+.++|+.++.-.......                 ......+..-++++++.|+.       +.+.+++..++.....
T Consensus       157 ~~i~iwd~~~~~~~~~~~~~-----------------~~V~~v~fspdg~~l~s~s~-------~~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          157 AIMRIIDPSDLTEKFEIETR-----------------GEVKDLHFSTDGKVVAYITG-------SSLEVISTVTGSCIAR  212 (365)
T ss_dssp             CEEEEEETTTTEEEEEEECS-----------------SCCCEEEECTTSSEEEEECS-------SCEEEEETTTCCEEEE
T ss_pred             CEEEEeECCCCcEEEEeCCC-----------------CceEEEEEccCCceEEeccc-------eeEEEEEeccCcceee
Confidence            45889999987754433211                 11111111225666666642       2367788887765543


Q ss_pred             ecCCCCCCCcccceEE--EECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEe
Q 010571          133 ETSGKVPVARGGHSVT--LVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG  210 (507)
Q Consensus       133 ~~~g~~p~~r~~~~~~--~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~G  210 (507)
                      ..   ..........+  .-++..++.++.+...  ...+..+|+...................-.+++...++.+++.|
T Consensus       213 ~~---~~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg  287 (365)
T 4h5i_A          213 KT---DFDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA  287 (365)
T ss_dssp             EC---CCCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE
T ss_pred             ee---cCCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE
Confidence            31   11111111222  2367777777665432  22356667666555433211000111111233444667788888


Q ss_pred             CCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEc
Q 010571          211 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNM  276 (507)
Q Consensus       211 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~  276 (507)
                      +.+     ..|.+||+.+..-..--    .......-.++.+  ++++++-|+.++     .+-++|+
T Consensus       288 s~D-----~~V~iwd~~~~~~~~~~----~~gH~~~V~~v~fSpdg~~laS~S~D~-----tvrvw~i  341 (365)
T 4h5i_A          288 SND-----NSIALVKLKDLSMSKIF----KQAHSFAITEVTISPDSTYVASVSAAN-----TIHIIKL  341 (365)
T ss_dssp             ETT-----SCEEEEETTTTEEEEEE----TTSSSSCEEEEEECTTSCEEEEEETTS-----EEEEEEC
T ss_pred             cCC-----CEEEEEECCCCcEEEEe----cCcccCCEEEEEECCCCCEEEEEeCCC-----eEEEEEc
Confidence            765     45889998876543210    1111111233444  567777776543     3556665

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.47  E-value=15  Score=29.86  Aligned_cols=10  Identities=0%  Similarity=0.072  Sum_probs=3.8

Q ss_pred             HHHHHhhHhh
Q 010571          433 LSSVQGQLVA  442 (507)
Q Consensus       433 ~~~~~~~~~~  442 (507)
                      +..+..+++.
T Consensus        81 ~~~ie~ElEe   90 (154)
T 2ocy_A           81 ADKLNKEVED   90 (154)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=84.40  E-value=0.34  Score=49.54  Aligned_cols=9  Identities=0%  Similarity=-0.064  Sum_probs=4.0

Q ss_pred             ceEEEEEcc
Q 010571          308 EHHLVAFGG  316 (507)
Q Consensus       308 ~~~l~v~GG  316 (507)
                      +.+.|.+++
T Consensus       253 k~F~I~~~~  261 (575)
T 2i1j_A          253 RKFIIKPID  261 (575)
T ss_dssp             TEEEEEESC
T ss_pred             CeEEEEEcc
Confidence            334444453

>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}

Probab=84.12  E-value=10  Score=27.59  Aligned_cols=14  Identities=43%  Similarity=0.520  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHhHH
Q 010571          466 TIENEVQILRQQKS  479 (507)
Q Consensus       466 ~~e~e~~~~~~~~~  479 (507)
                      +|+-|+..+.++++
T Consensus        71 elqgEI~~Lnq~Lq   84 (99)
T 3ni0_A           71 ELENEVTKLNQELE   84 (99)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444333

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=83.97  E-value=9.9  Score=28.94  Aligned_cols=7  Identities=29%  Similarity=0.425  Sum_probs=2.5

Q ss_pred             hHHhHHH
Q 010571          429 LSKELSS  435 (507)
Q Consensus       429 ~~~e~~~  435 (507)
                      ++.++++
T Consensus        34 L~~~~~~   40 (107)
T 2no2_A           34 LEDSLER   40 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=83.96  E-value=2.4  Score=24.47  Aligned_cols=28  Identities=11%  Similarity=0.281  Sum_probs=16.0

Q ss_pred             HHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010571          461 LESSQTIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       461 ~~~~~~~e~e~~~~~~~~~~~~~~~~~~  488 (507)
                      |++.++|.+++++.+.++.++.++-+++
T Consensus         6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL   33 (37)
T 1t6f_A            6 LKENEKLHKEIEQKDNEIARLKKENKEL   33 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4445556666666666666665555444

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=83.84  E-value=7  Score=27.21  Aligned_cols=24  Identities=29%  Similarity=0.471  Sum_probs=10.3

Q ss_pred             HHHHHhhccchhhHHhHHHHHhhH
Q 010571          417 EKIDEVNSTHSELSKELSSVQGQL  440 (507)
Q Consensus       417 ~~~~~~~~~~~~~~~e~~~~~~~~  440 (507)
                      +++++.+..+.++++.++..+.++
T Consensus         7 ~kLq~~E~~N~~Le~~v~~le~~L   30 (72)
T 3cve_A            7 MKLQEVEIRNKDLEGQLSEMEQRL   30 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            344444444444444444333333

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.48  E-value=6.1  Score=31.27  Aligned_cols=38  Identities=13%  Similarity=0.242  Sum_probs=18.5

Q ss_pred             hhhHHHHHHhhccchhhHHhHHHHHhhHhhhhhhhhhH
Q 010571          413 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL  450 (507)
Q Consensus       413 ~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  450 (507)
                      +.++.++..+...+..+..++.....++..++.+..+.
T Consensus        28 e~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~a   65 (135)
T 2e7s_A           28 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKA   65 (135)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455544445555555555555555554433333

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=83.47  E-value=27  Score=33.73  Aligned_cols=152  Identities=11%  Similarity=0.061  Sum_probs=70.0

Q ss_pred             CEEEEEcCcCCCCCccCcEEEEEcCCC--------cEEEeecCCCCCCCCCCceEEEEcCcE-EEEEeCCCCCcCCCcEE
Q 010571          152 SRLIIFGGEDRSRKLLNDVHFLDLETM--------TWDAVEVTQTPPAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLH  222 (507)
Q Consensus       152 ~~l~~~GG~~~~~~~~~~~~~~d~~t~--------~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~i~GG~~~~~~~~~i~  222 (507)
                      +.+++.|+.+      ..|.+||+.+.        ....+...  ........++....++. +++.|+.+     ..+.
T Consensus       141 ~~~lat~~~d------g~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~  207 (430)
T 2xyi_A          141 ACVIATKTPS------SDVLVFDYTKHPSKPEPSGECQPDLRL--RGHQKEGYGLSWNPNLNGYLLSASDD-----HTIC  207 (430)
T ss_dssp             EEEEEEECSS------SCEEEEEGGGSCSSCCTTCCCCCSEEE--ECCSSCCCCEEECTTSTTEEEEECTT-----SCEE
T ss_pred             CcEEEEECCC------CcEEEEECCCcccccCccccCCCcEEe--cCCCCCeEEEEeCCCCCCeEEEEeCC-----CeEE
Confidence            3566666643      35888888651        11111100  01111223344444443 67777654     4588


Q ss_pred             EEECCCCc---EEeeeecCCCCCCCcceEEEEE---CCEEEEEeccCCCCCcceEEEEEcCcCe-eEEeccCCCCCCCCC
Q 010571          223 VLDLQTNE---WSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNNNGCQETIVLNMTKLA-WSILTSVKGRNPLAS  295 (507)
Q Consensus       223 ~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~d~~~~d~~~~~-W~~~~~~~~~~p~~~  295 (507)
                      +||+.+..   +.... .............+.+   ++.+++.|+.++     .+.+||+.+.. ...+..+.      .
T Consensus       208 vwd~~~~~~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-----~i~i~d~~~~~~~~~~~~~~------~  275 (430)
T 2xyi_A          208 LWDINATPKEHRVIDA-KNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-----KLMIWDTRNNNTSKPSHTVD------A  275 (430)
T ss_dssp             EEETTSCCBGGGEEEC-SEEECCCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCSCSSSCSEEEE------C
T ss_pred             EEeCCCCCCCCceecc-ceeecCCCCCEeeeEEeCCCCCEEEEEeCCC-----eEEEEECCCCCCCcceeEee------c
Confidence            89987621   21100 0001111111122333   456777776443     47889987652 11111110      0


Q ss_pred             CCCceEEEEE-cCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          296 EGLSVCSAII-EGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       296 ~~~~~~~~~~-~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      +......+.+ +.+..+++.|+.+    ..+.+||+..
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~d----g~v~vwd~~~  309 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSAD----KTVALWDLRN  309 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETT----SEEEEEETTC
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCC----CeEEEEeCCC
Confidence            1112223333 3344577778765    4577888754

>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1

Probab=83.37  E-value=5.4  Score=27.58  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=12.9

Q ss_pred             HHHHhhccchhhHHhHHHHHhhHhhhh
Q 010571          418 KIDEVNSTHSELSKELSSVQGQLVAER  444 (507)
Q Consensus       418 ~~~~~~~~~~~~~~e~~~~~~~~~~~~  444 (507)
                      .++.+..+.+++.+.+...+++++..+
T Consensus         5 ~v~~l~~E~eel~~klk~~~ee~~~~~   31 (71)
T 1uix_A            5 DVANLANEKEELNNKLKEAQEQLSRLK   31 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555444555444444443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=83.33  E-value=4.3  Score=42.58  Aligned_cols=63  Identities=8%  Similarity=0.083  Sum_probs=31.0

Q ss_pred             CCCCeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCC----ccCCceEEEECCCCce
Q 010571            2 DSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNG----RFLSDVQVFDLRSLAW   65 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~----~~~~~~~~~d~~t~~W   65 (507)
                      |...|.+|+.++.-..+....... ...-.+.+.. ++..++++....+    .....++++|+.++..
T Consensus        35 d~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~  102 (719)
T 1z68_A           35 DNNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF  102 (719)
T ss_dssp             TSCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc
Confidence            345778888877766554210000 0001222222 4444444432111    1124689999998875

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=83.25  E-value=5.4  Score=38.48  Aligned_cols=15  Identities=7%  Similarity=-0.239  Sum_probs=6.7

Q ss_pred             hhHHhhHHHHHHHHH
Q 010571          389 TDIDAIKEDKRVLEL  403 (507)
Q Consensus       389 ~~~~~l~~~~~~~~~  403 (507)
                      +++..++...+.++.
T Consensus        31 k~e~~V~~~l~~LE~   45 (409)
T 1m1j_C           31 KYRLTTDGELLEIEG   45 (409)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHhcchhHHHHHHH
Confidence            344444444444444

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=83.06  E-value=13  Score=28.16  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHh
Q 010571          464 SQTIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       464 ~~~~e~e~~~~~~~~~~~~~~~~~~  488 (507)
                      .++|+-|+..|.++++..+.+++++
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erl   97 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERL   97 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555554443

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=82.72  E-value=9.9  Score=26.44  Aligned_cols=22  Identities=14%  Similarity=0.129  Sum_probs=9.1

Q ss_pred             HHHHHhhHhhhhhhhhhHHHHH
Q 010571          433 LSSVQGQLVAERSRCFKLEAQI  454 (507)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~e~~~  454 (507)
                      +++.+..++.+++++..+++.+
T Consensus         9 Lq~~E~~N~~Le~~v~~le~~L   30 (72)
T 3cve_A            9 LQEVEIRNKDLEGQLSEMEQRL   30 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            3344444444444444444333

>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1

Probab=82.71  E-value=5.1  Score=29.61  Aligned_cols=42  Identities=29%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010571          447 CFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA  488 (507)
Q Consensus       447 ~~~~e~~~~e~~~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~  488 (507)
                      ..+++.++.++++++..++.++++...++.+-.-++.+++..
T Consensus        49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F   90 (96)
T 1t3j_A           49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENF   90 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            345666777777777778877777777777777777777654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=82.65  E-value=35  Score=32.71  Aligned_cols=70  Identities=9%  Similarity=0.070  Sum_probs=39.7

Q ss_pred             CCEEEEEecc----CCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCc-eEEEEEcccCCCcCCeEEE
Q 010571          253 DENWYIVGGG----DNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGE-HHLVAFGGYNGKYNNEVFV  327 (507)
Q Consensus       253 ~~~l~v~GG~----~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~v~~  327 (507)
                      ++++|+.-+.    ......+.++++|+.+.+-..--.+..        ....+.+..++ ..||+.-+.    .+++.+
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--------~~~~lavs~D~~~~ly~tn~~----~~~VsV  358 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--------EIDSINVSQDEKPLLYALSTG----DKTLYI  358 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--------EECEEEECSSSSCEEEEEETT----TTEEEE
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--------CcceEEECCCCCeEEEEEcCC----CCeEEE
Confidence            5689986431    122235789999999887544222211        11122233333 467775432    478999


Q ss_pred             EECCCCC
Q 010571          328 MRLKPRD  334 (507)
Q Consensus       328 ~~~~~~~  334 (507)
                      ||..+.+
T Consensus       359 iD~~t~k  365 (386)
T 3sjl_D          359 HDAESGE  365 (386)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9987664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=82.56  E-value=51  Score=34.53  Aligned_cols=60  Identities=7%  Similarity=-0.025  Sum_probs=29.9

Q ss_pred             cEEEEECCC---C---cEEeeeecCCCCCCCcceEE--EEECCEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571          220 DLHVLDLQT---N---EWSQPEIKGDLVTGRAGHAG--ITIDENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       220 ~i~~~d~~~---~---~W~~~~~~~~~p~~r~~~~~--~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      .++++|+.+   +   ....+.........-.....  ..-+++++++.- +.......++++|..+..
T Consensus       229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~-~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL-RRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE-ESSTTEEEEEEEEEETTT
T ss_pred             EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEe-CCCCCEEEEEEEECCCCc
Confidence            588999988   7   66665310000001111122  233677555432 122233468888887765

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C

Probab=82.49  E-value=7  Score=37.56  Aligned_cols=41  Identities=22%  Similarity=0.266  Sum_probs=21.1

Q ss_pred             chhhHHhhHHHHHHHHHhhHHHHhhhhhhHHHHHHhhccch
Q 010571          387 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS  427 (507)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  427 (507)
                      |-+++...+....+++..+.+....+....+.+..++....
T Consensus        29 L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~   69 (411)
T 3ghg_C           29 LSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYN   69 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence            44455555555555655555554444555555554444433

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=82.40  E-value=2  Score=32.08  Aligned_cols=9  Identities=33%  Similarity=0.586  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 010571          467 IENEVQILR  475 (507)
Q Consensus       467 ~e~e~~~~~  475 (507)
                      |++|++.|+
T Consensus        80 Lq~E~erLr   88 (100)
T 1go4_E           80 LQAECERLR   88 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=82.35  E-value=4.6  Score=28.10  Aligned_cols=27  Identities=26%  Similarity=0.397  Sum_probs=12.0

Q ss_pred             hhhhhHHHHHHhhccchhhHHhHHHHH
Q 010571          411 ENSRFREKIDEVNSTHSELSKELSSVQ  437 (507)
Q Consensus       411 ~~~~l~~~~~~~~~~~~~~~~e~~~~~  437 (507)
                      -+..|-..++++..+.+-+..|+...+
T Consensus        31 vk~DLI~rvdELt~E~e~l~~El~s~~   57 (77)
T 2w83_C           31 VKNDLIAKVDELTCEKDVLQGELEAVK   57 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344454455555544444433333333

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=82.28  E-value=23  Score=30.28  Aligned_cols=154  Identities=11%  Similarity=0.086  Sum_probs=78.1

Q ss_pred             EEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcc
Q 010571           33 AAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGG  108 (507)
Q Consensus        33 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG  108 (507)
                      ++.+++.+|+|=|       +.+|+++....  .....+....          ....| .... ++...  ++++|+|-|
T Consensus        12 i~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~----------w~glP-~~ID-Aa~~~~~~~~~yfFkG   72 (195)
T 1itv_A           12 IAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADK----------WPALP-RKLD-SVFEEPLSKKLFFFSG   72 (195)
T ss_dssp             EEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHH----------CTTSC-SSCS-EEEECTTTCCEEEEET
T ss_pred             EEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhc----------cCCCC-CCcc-EEEEECCCCeEEEEeC
Confidence            4457999999987       45777776542  1211111100          01112 2222 22222  688999977


Q ss_pred             cCCCCCCcceEEEEECCCCcEEEeecCC-CCCCC--cccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEE---
Q 010571          109 HYKKSSDSMIVRFIDLETNLCGVMETSG-KVPVA--RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA---  182 (507)
Q Consensus       109 ~~~~~~~~~~~~~~d~~t~~W~~~~~~g-~~p~~--r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~---  182 (507)
                      .        .+|+|+..+..- ...... .+|..  ....+....++++|+|-|.        ..+.||..+.+-..   
T Consensus        73 ~--------~yw~~~~~~~~~-Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyP  135 (195)
T 1itv_A           73 R--------QVWVYTGASVLG-PRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSA  135 (195)
T ss_dssp             T--------EEEEEETTEEEE-EEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGC
T ss_pred             C--------EEEEEcCCccCC-CEEeeecccCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCc
Confidence            3        478887553221 111110 12321  2222222225699999663        57889987653211   


Q ss_pred             --ee-cCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          183 --VE-VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       183 --~~-~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                        +. .=..+|.  .-.++... ++.+|+|-|       +..|.||..+..-.
T Consensus       136 r~i~~~w~Gvp~--~idaa~~~-~g~~Yffkg-------~~y~~~~~~~~~v~  178 (195)
T 1itv_A          136 SEVDRMFPGVPL--DTHDVFQF-REKAYFCQD-------RFYWRVSSRSELNQ  178 (195)
T ss_dssp             EEHHHHSTTSCS--SCSEEEEE-TTEEEEEET-------TEEEEEECCTTCCE
T ss_pred             cChhhcCCCCCC--CCCEEEEe-CCeEEEEeC-------CEEEEEECCccEEe
Confidence              10 0001222  22344444 477999988       57899998766533

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=82.18  E-value=30  Score=31.54  Aligned_cols=100  Identities=10%  Similarity=0.089  Sum_probs=52.0

Q ss_pred             ECCEEEEEcccCCCCCCcceEEEEECC-CCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcC
Q 010571           99 WGTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus        99 ~~~~iyv~GG~~~~~~~~~~~~~~d~~-t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~  176 (507)
                      .++.||+...       ...++.||+. ...|....   .  .. ...+.+.. ++.+|+. ..      ...++.||+.
T Consensus       106 ~~~~l~v~t~-------~~~l~~~d~~g~~~~~~~~---~--~~-~~~~~~~~~~g~l~vg-t~------~~~l~~~d~~  165 (330)
T 3hxj_A          106 FEDILYVTSM-------DGHLYAINTDGTEKWRFKT---K--KA-IYATPIVSEDGTIYVG-SN------DNYLYAINPD  165 (330)
T ss_dssp             ETTEEEEECT-------TSEEEEECTTSCEEEEEEC---S--SC-CCSCCEECTTSCEEEE-CT------TSEEEEECTT
T ss_pred             ECCEEEEEec-------CCEEEEEcCCCCEEEEEcC---C--Cc-eeeeeEEcCCCEEEEE-cC------CCEEEEECCC
Confidence            3888887532       2348899988 33465442   1  11 11222333 5566663 22      2469999987


Q ss_pred             CCc--EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC-CcEEe
Q 010571          177 TMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQ  233 (507)
Q Consensus       177 t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~-~~W~~  233 (507)
                       ++  |....     +.. ...+++...++.+|+..        ..++.||... ..|..
T Consensus       166 -g~~~~~~~~-----~~~-~~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~  210 (330)
T 3hxj_A          166 -GTEKWRFKT-----NDA-ITSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNF  210 (330)
T ss_dssp             -SCEEEEEEC-----SSC-CCSCCEECTTCCEEEES--------SSEEEECTTSCEEEEE
T ss_pred             -CCEeEEEec-----CCC-ceeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEE
Confidence             43  54432     111 12333443466566643        4588888432 24655

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=82.15  E-value=30  Score=31.57  Aligned_cols=204  Identities=9%  Similarity=-0.007  Sum_probs=99.0

Q ss_pred             CCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CC
Q 010571           24 RPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GT  101 (507)
Q Consensus        24 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~  101 (507)
                      +|.+...+++++. ++.||+.--     ....+++||+.+.. ......+                 . .-++++.. ++
T Consensus        28 ~p~~~~pegia~~~~g~lyv~d~-----~~~~I~~~d~~g~~-~~~~~~~-----------------~-~p~gia~~~dG   83 (306)
T 2p4o_A           28 FPVNTFLENLASAPDGTIFVTNH-----EVGEIVSITPDGNQ-QIHATVE-----------------G-KVSGLAFTSNG   83 (306)
T ss_dssp             ECTTCCEEEEEECTTSCEEEEET-----TTTEEEEECTTCCE-EEEEECS-----------------S-EEEEEEECTTS
T ss_pred             CCCCCCcceEEECCCCCEEEEeC-----CCCeEEEECCCCce-EEEEeCC-----------------C-CceeEEEcCCC
Confidence            4444555555553 566887743     13468999987642 2221111                 1 12333332 56


Q ss_pred             EEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcE
Q 010571          102 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTW  180 (507)
Q Consensus       102 ~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W  180 (507)
                      +||+......    ...++.||+.+++...+.   ..+..+.....+.. ++.+|+.--      ....++++|+.+..-
T Consensus        84 ~l~vad~~~~----~~~v~~~d~~~g~~~~~~---~~~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           84 DLVATGWNAD----SIPVVSLVKSDGTVETLL---TLPDAIFLNGITPLSDTQYLTADS------YRGAIWLIDVVQPSG  150 (306)
T ss_dssp             CEEEEEECTT----SCEEEEEECTTSCEEEEE---ECTTCSCEEEEEESSSSEEEEEET------TTTEEEEEETTTTEE
T ss_pred             cEEEEeccCC----cceEEEEcCCCCeEEEEE---eCCCccccCcccccCCCcEEEEEC------CCCeEEEEeCCCCcE
Confidence            7888653211    124888999998887665   23333332233322 446666431      134799999876432


Q ss_pred             EEe--ecCCC--CCCCC-CCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCC-CcEEeeeecCCCCCCCcceEEEEE-C
Q 010571          181 DAV--EVTQT--PPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT-NEWSQPEIKGDLVTGRAGHAGITI-D  253 (507)
Q Consensus       181 ~~~--~~~g~--~p~~r-~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~-~~W~~~~~~~~~p~~r~~~~~~~~-~  253 (507)
                      ...  .....  .+... .........++.||+.--.     .+.|++|++.. +.............|   ..+++- +
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~-----~~~I~~~~~~~~g~~~~~~~~~~~~~P---~gi~vd~d  222 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFVEQTNI---DDFAFDVE  222 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEEESCCC---SSEEEBTT
T ss_pred             eEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC-----CCEEEEEEeCCCCCCCccEEEeccCCC---CCeEECCC
Confidence            111  11000  11111 1112223345568876432     36799999865 222111100111111   122222 5


Q ss_pred             CEEEEEeccCCCCCcceEEEEEcC
Q 010571          254 ENWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~d~~~~d~~  277 (507)
                      +++|+.-..     .+.+.+||+.
T Consensus       223 G~l~va~~~-----~~~V~~~~~~  241 (306)
T 2p4o_A          223 GNLYGATHI-----YNSVVRIAPD  241 (306)
T ss_dssp             CCEEEECBT-----TCCEEEECTT
T ss_pred             CCEEEEeCC-----CCeEEEECCC
Confidence            678877432     2358889886

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=81.81  E-value=7.5  Score=27.61  Aligned_cols=31  Identities=10%  Similarity=0.171  Sum_probs=15.0

Q ss_pred             chhhHHhHHHHHhhHhhhhhhhhhHHHHHHH
Q 010571          426 HSELSKELSSVQGQLVAERSRCFKLEAQIAE  456 (507)
Q Consensus       426 ~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~e  456 (507)
                      .++....++..+..++.+++++..+++.+++
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~   38 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEE   38 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3334444555555555555555555554443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=81.56  E-value=33  Score=31.68  Aligned_cols=106  Identities=14%  Similarity=0.122  Sum_probs=57.1

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      ++.+++.|+.+.      .+.+||+.++.-....   .......-.+++.. ++.+++.|+.+      ..+.+||+.+.
T Consensus       138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~---~~~~~~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~  202 (343)
T 3lrv_A          138 NTEYFIWADNRG------TIGFQSYEDDSQYIVH---SAKSDVEYSSGVLHKDSLLLALYSPD------GILDVYNLSSP  202 (343)
T ss_dssp             -CCEEEEEETTC------CEEEEESSSSCEEEEE---CCCSSCCCCEEEECTTSCEEEEECTT------SCEEEEESSCT
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCcEEEEE---ecCCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCC
Confidence            456667676432      3889999888764433   11111112222222 45777777754      35999999877


Q ss_pred             cEE--EeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          179 TWD--AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       179 ~W~--~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      +-.  .+.  +  .....-.++....++..++.|+ +     +.+.+||+.+..
T Consensus       203 ~~~~~~~~--~--~h~~~v~~l~fs~~g~~l~s~~-~-----~~v~iwd~~~~~  246 (343)
T 3lrv_A          203 DQASSRFP--V--DEEAKIKEVKFADNGYWMVVEC-D-----QTVVCFDLRKDV  246 (343)
T ss_dssp             TSCCEECC--C--CTTSCEEEEEECTTSSEEEEEE-S-----SBEEEEETTSST
T ss_pred             CCCccEEe--c--cCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEEcCCCC
Confidence            643  221  1  0111112233335555666666 2     268899987653

>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}

Probab=81.06  E-value=4.1  Score=30.26  Aligned_cols=7  Identities=14%  Similarity=0.425  Sum_probs=2.6

Q ss_pred             HhhHHHH
Q 010571          392 DAIKEDK  398 (507)
Q Consensus       392 ~~l~~~~  398 (507)
                      +.|+++.
T Consensus        38 eeLQ~Ei   44 (107)
T 2k48_A           38 QELQENI   44 (107)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3333333

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=80.86  E-value=39  Score=32.07  Aligned_cols=70  Identities=9%  Similarity=0.067  Sum_probs=38.7

Q ss_pred             CCEEEEEeccCC----CCCcceEEEEEcCcCee-EEeccCCCCCCCCCCCCceEEEEEcCce-EEEEEcccCCCcCCeEE
Q 010571          253 DENWYIVGGGDN----NNGCQETIVLNMTKLAW-SILTSVKGRNPLASEGLSVCSAIIEGEH-HLVAFGGYNGKYNNEVF  326 (507)
Q Consensus       253 ~~~l~v~GG~~~----~~~~~d~~~~d~~~~~W-~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~v~  326 (507)
                      ++++|+......    ....++++++|..+.+- ..++ .+.        ......+.+++. .+|+..+.    .+++.
T Consensus       278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~--------~p~~i~~s~Dg~~~l~v~~~~----~~~V~  344 (373)
T 2mad_H          278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGH--------DVDAISVAQDGGPDLYALSAG----TEVLH  344 (373)
T ss_pred             CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCC--------CcCeEEECCCCCeEEEEEcCC----CCeEE
Confidence            357888653211    11346899999988765 3332 211        112233444444 56664422    37899


Q ss_pred             EEECCCCCC
Q 010571          327 VMRLKPRDI  335 (507)
Q Consensus       327 ~~~~~~~~w  335 (507)
                      ++|+.+.+-
T Consensus       345 ViD~~t~~v  353 (373)
T 2mad_H          345 IYDAGAGDQ  353 (373)
T ss_pred             EEECCCCCE
Confidence            999876543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=80.78  E-value=30  Score=35.92  Aligned_cols=108  Identities=10%  Similarity=0.011  Sum_probs=54.0

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCC---CccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSR---KLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~---~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                      .++++|+.+++-..+......  .......+.+  +++.++++..+...   .....++.+|+.+++-..+..... ...
T Consensus        38 ~i~~~d~~~g~~~~~~~~~~~--~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~  114 (723)
T 1xfd_A           38 TVRLWNVETNTSTVLIEGKKI--ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNA  114 (723)
T ss_dssp             CEEEBCGGGCCCEEEECTTTT--TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSC
T ss_pred             CEEEEECCCCcEEEEeccccc--cccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccc
Confidence            488888888866555421111  0001122233  45545554432211   124679999999887655542111 001


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeee
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                      . ....+...++..++++..      +.++++|+.++....+.
T Consensus       115 ~-~~~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A          115 K-LQYAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             C-CSBCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEE
T ss_pred             c-ccccEECCCCCEEEEEEC------CeEEEEECCCCceEEEe
Confidence            1 112223334434444442      47889988877665543

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=80.52  E-value=33  Score=33.63  Aligned_cols=156  Identities=7%  Similarity=-0.035  Sum_probs=78.2

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEccc
Q 010571           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGH  109 (507)
Q Consensus        32 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  109 (507)
                      +++.+.+.+|+|-|       .-+|+++.....+...+-...          +...| .... ++...  ++++|+|=|.
T Consensus       267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~----------Wp~LP-~~iD-Aa~~~~~~g~~~fFKg~  327 (450)
T 1su3_A          267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVF----------WPQLP-NGLE-AAYEFADRDEVRFFKGN  327 (450)
T ss_dssp             EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGT----------CTTSC-SSCC-EEEEEGGGTEEEEEETT
T ss_pred             eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHh----------ccCCC-CCee-EEEEEcCCCeEEEEeCC
Confidence            44557999999988       345666654433322211111          11122 2222 22222  6899999763


Q ss_pred             CCCCCCcceEEEEECCCC---cEEEee-cCCCCCC-CcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEE-
Q 010571          110 YKKSSDSMIVRFIDLETN---LCGVME-TSGKVPV-ARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWD-  181 (507)
Q Consensus       110 ~~~~~~~~~~~~~d~~t~---~W~~~~-~~g~~p~-~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~-  181 (507)
                              .+|+|+..+.   -=+.+. .. ..|. +..--++...  ++++|+|-|.        ..|.||..+.+-. 
T Consensus       328 --------~~W~~~~~~~~~gyP~~i~~~~-g~P~~~~~IDAA~~~~~~~k~yfFkG~--------~yw~yd~~~~~~~~  390 (450)
T 1su3_A          328 --------KYWAVQGQNVLHGYPKDIYSSF-GFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDP  390 (450)
T ss_dssp             --------EEEEEETTEECTTCSEEHHHHH-CCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECS
T ss_pred             --------EEEEecCCcccCCCceeeehhh-cCCCCCCccceEEEEcCCCeEEEEeCC--------EEEEEeCCCccccC
Confidence                    3778764321   001111 01 1222 1111233333  5799999763        5888987653321 


Q ss_pred             ----Eeec-CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          182 ----AVEV-TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       182 ----~~~~-~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                          .+.. -...| .... ++. ..++++|+|-|       +..|+||..+..-..
T Consensus       391 gYPk~I~~~fpgip-~~iD-AA~-~~~g~~YFFkg-------~~ywr~d~~~~~v~~  437 (450)
T 1su3_A          391 GYPKMIAHDFPGIG-HKVD-AVF-MKDGFFYFFHG-------TRQYKFDPKTKRILT  437 (450)
T ss_dssp             SCSEEHHHHSTTSC-SCCS-EEE-EETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             CCCcchhhcCCCCC-CCcc-EEE-EcCCeEEEEeC-------CEEEEEECCcceEec
Confidence                1110 00122 1222 333 34678999988       678999988776554

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=80.41  E-value=2.6  Score=31.01  Aligned_cols=10  Identities=10%  Similarity=0.169  Sum_probs=3.7

Q ss_pred             HHHHHHHhHH
Q 010571          470 EVQILRQQKS  479 (507)
Q Consensus       470 e~~~~~~~~~  479 (507)
                      ++.++.++++
T Consensus        64 ~l~~~e~eLe   73 (89)
T 2lw1_A           64 DMAAAEQELE   73 (89)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	507
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	1e-14
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-08
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	8e-08
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-08

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 1e-14
 Identities = 45/289 (15%), Positives = 74/289 (25%), Gaps = 31/289 (10%)

Query: 13  DLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLET 72
             W+ L        PR   A  V    LY VGG  N    +            +N     
Sbjct: 29  GTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC 85

Query: 73  ELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 132
                               +   V      +   G          V   + E +     
Sbjct: 86  APM-------------SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD---EW 129

Query: 133 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP 192
                +   R G  V ++   L   GG D + + LN       E   W  +    T    
Sbjct: 130 HLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITAMNTI--- 185

Query: 193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 252
               +     +  +   GG       N +   D++T  W+       +   R+       
Sbjct: 186 -RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA---PMKHRRSALGITVH 241

Query: 253 DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC 301
               Y++GG D +         +     WS +T +         G+ V 
Sbjct: 242 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVGVA 286

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 5/120 (4%)

Query: 150 VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVF 209
           VG  +   GG  R    L+ +   +    TW  +        PR   +  +       V 
Sbjct: 3   VGRLIYTAGGYFRQS--LSYLEAYNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVG 57

Query: 210 GGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQ 269
           G  +      D   LD      +Q      +   R       ID + Y VGG        
Sbjct: 58  GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHN 117

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 8e-08
 Identities = 13/68 (19%), Positives = 22/68 (32%)

Query: 1   MDSGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDL 60
                  +E       T          R      V   ++Y++GG     FL  V+ +D 
Sbjct: 206 GQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 265

Query: 61  RSLAWSNL 68
            +  WS +
Sbjct: 266 DTDTWSEV 273

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 35/314 (11%), Positives = 75/314 (23%), Gaps = 40/314 (12%)

Query: 25  PSPRYKHAAAVFDQKLYIVGGSRNGRFLSD------VQVFDLRSLAWSNLRLETELDADK 78
           P      A      ++ +    RN  F            +D  +   S+           
Sbjct: 18  PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------- 68

Query: 79  TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGK 137
                       ++ H M   G  +   G        D+      D  ++    +     
Sbjct: 69  ----------VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW--IPGPDM 116

Query: 138 VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 197
                   S T+   R+   GG         +       + TW ++   +  P    D  
Sbjct: 117 QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 176

Query: 198 AALHANRYLIVFGGCSHSIFF-----NDLHVLDLQTNEWSQPE-------IKGDLVTGRA 245
               ++ +  +FG    S+F               + +            +  D + G A
Sbjct: 177 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 236

Query: 246 GHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAII 305
                   +     G  D  +    T    +T        +    +       +  ++++
Sbjct: 237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 296

Query: 306 EGEHHLVAFGGYNG 319
             +      GG   
Sbjct: 297 LPDGSTFITGGQRR 310

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	507
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.97
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.08
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.89
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	96.58
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.36
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.3
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	95.76
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.72
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.51
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.5
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	95.15
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	95.09
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	94.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	94.82
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	93.92
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	93.88
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	93.61
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	93.34
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	93.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	93.23
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	92.84
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	92.83
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	92.76
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	92.45
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.42
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.32
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	92.31
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	92.28
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	92.19
d1tbga_	340	beta1-subunit of the signal-transducing G protein	91.82
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	91.35
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	90.73
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	89.88
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	89.65
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	88.92
d1v0ea1	516	Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34	88.8
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	87.04
d1tbga_	340	beta1-subunit of the signal-transducing G protein	86.47
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	86.11
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	86.04
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	86.01
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.73
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.53
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	82.01
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	81.57
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	81.22
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	81.07
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	80.84

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-38  Score=301.46  Aligned_cols=264  Identities=19%  Similarity=0.229  Sum_probs=232.7

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCC----CccCCceEEEECCCCceeEeeeccccccCc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRN----GRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~----~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~   78 (507)
                      +++++||+.+++|++++   ++|.||.+|++++++++|||+||...    ...++++++||+.+++|..++.++      
T Consensus        19 ~~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p------   89 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS------   89 (288)
T ss_dssp             CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCS------
T ss_pred             ceEEEEECCCCeEEECC---CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccccccc------
Confidence            57889999999999998   79999999999999999999999642    356789999999999999987654      


Q ss_pred             cccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEc
Q 010571           79 TEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFG  158 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~G  158 (507)
                                .+|.+|+++.++++||++||...... .+.++.||+.+..|....   .+|.+|.+++++.+.+.+|++|
T Consensus        90 ----------~~r~~~~~~~~~~~i~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~~~~~G  155 (288)
T d1zgka1          90 ----------VPRNRIGVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVG  155 (288)
T ss_dssp             ----------SCCBTCEEEEETTEEEEECCEETTEE-CCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEC
T ss_pred             ----------ceecceeccccceeeEEecceecccc-cceeeeeccccCcccccc---ccccccccceeeeeeecceEec
Confidence                      48999999999999999999876554 678999999999999887   7889999999999999999999


Q ss_pred             CcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecC
Q 010571          159 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG  238 (507)
Q Consensus       159 G~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~  238 (507)
                      |.+... ..++++.||+.+++|....   ..+.++..++++.+. +.++++||......+++.+.||+.+++|..+   .
T Consensus       156 G~~~~~-~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~---~  227 (288)
T d1zgka1         156 GFDGTN-RLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLH-NCIYAAGGYDGQDQLNSVERYDVETETWTFV---A  227 (288)
T ss_dssp             CBCSSC-BCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTEEEEC---C
T ss_pred             Cccccc-ccceEEEeecccccccccc---cccccccccccccee-eeEEEecCccccccccceeeeeecceeeecc---c
Confidence            987554 4778999999999999886   566778888888875 5599999998888899999999999999996   5


Q ss_pred             CCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceE
Q 010571          239 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVC  301 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~  301 (507)
                      ++|.+|..|++++++++|||+||.+.....+++++||+.+++|+.++.+    |.+|.+|+++
T Consensus       228 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----p~~R~~~~~~  286 (288)
T d1zgka1         228 PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM----TSGRSGVGVA  286 (288)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC----SSCCBSCEEE
T ss_pred             CccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCC----CCCcEeEEEE
Confidence            7889999999999999999999998877788999999999999999887    4566676543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=300.76  Aligned_cols=276  Identities=19%  Similarity=0.278  Sum_probs=236.1

Q ss_pred             ECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCC--
Q 010571           36 FDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS--  113 (507)
Q Consensus        36 ~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--  113 (507)
                      +|+.||||||... ..++++++||+.+++|..++.+                |.+|.+|++++++++||++||.....  
T Consensus         3 ~g~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~~----------------p~~R~~~~~~~~~~~iyv~GG~~~~~~~   65 (288)
T d1zgka1           3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADL----------------QVPRSGLAGCVVGGLLYAVGGRNNSPDG   65 (288)
T ss_dssp             CCCCEEEECCBSS-SBCCCEEEEETTTTEEEECCCC----------------SSCCBSCEEEEETTEEEEECCEEEETTE
T ss_pred             cCCEEEEECCcCC-CCCceEEEEECCCCeEEECCCC----------------CCccceeEEEEECCEEEEEeCcccCCCC
Confidence            4788999999865 4678999999999999998755                44899999999999999999975332  


Q ss_pred             -CCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          114 -SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       114 -~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                       ...+++++||+.+++|..++   ++|.+|.+|+++.+++++|++||..... ..++++.||+.+..|....   ..+.+
T Consensus        66 ~~~~~~~~~yd~~~~~w~~~~---~~p~~r~~~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~  138 (288)
T d1zgka1          66 NTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVA---PMLTR  138 (288)
T ss_dssp             EEECCCEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECC---CCSSC
T ss_pred             ccccchhhhcccccccccccc---cccceecceeccccceeeEEecceeccc-ccceeeeeccccCcccccc---ccccc
Confidence             24678999999999999987   8999999999999999999999986544 5788999999999998876   67788


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEE
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI  272 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~  272 (507)
                      |..|+++.+ ++.++++||.......++++.||+.++.|...   ...+.++..|+++.+++.++++||.+.....++.+
T Consensus       139 r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~  214 (288)
T d1zgka1         139 RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE  214 (288)
T ss_dssp             CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEE
T ss_pred             cccceeeee-eecceEecCcccccccceEEEeeccccccccc---cccccccccccccceeeeEEEecCcccccccccee
Confidence            999999888 55599999998888889999999999999986   56777889999999999999999988877788999


Q ss_pred             EEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCC-cCCeEEEEECCCCCCCCCcccCChhhh
Q 010571          273 VLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAAA  347 (507)
Q Consensus       273 ~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~v~~~~~~~~~w~~~~~~~~~~~~  347 (507)
                      .||+.+.+|..++++    |.+|.+++++  +++  +.|||+||.++. ..+++++||+.++.|+.+..++.++..
T Consensus       215 ~~~~~~~~~~~~~~~----p~~r~~~~~~--~~~--~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~  282 (288)
T d1zgka1         215 RYDVETETWTFVAPM----KHRRSALGIT--VHQ--GRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSG  282 (288)
T ss_dssp             EEETTTTEEEECCCC----SSCCBSCEEE--EET--TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS
T ss_pred             eeeecceeeecccCc----cCcccceEEE--EEC--CEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEe
Confidence            999999999998765    4455555444  444  489999998754 678899999999999999888777643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.97  E-value=2e-29  Score=249.18  Aligned_cols=287  Identities=14%  Similarity=0.149  Sum_probs=202.9

Q ss_pred             CCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCcc------CCceEEEECCCCceeEeeeccccccCccccCC
Q 010571           10 LPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRF------LSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus        10 ~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~------~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      |..+.|+..+   ++|..|..++++..+++||+|||..+...      ...+++||+.+++|..++.+..          
T Consensus         6 p~~g~W~~~~---~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~----------   72 (387)
T d1k3ia3           6 PGLGRWGPTI---DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT----------   72 (387)
T ss_dssp             TTSCEEEEEE---ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC----------
T ss_pred             CCCCccCCcC---CCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC----------
Confidence            4578899877   57877776766666999999999765332      2347899999999998876642          


Q ss_pred             ccCCCCCccceeeEE-ECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcC
Q 010571           84 LLEVLPPMSDHCMVK-WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGED  161 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~  161 (507)
                          +..+..++++. .+++||++||...     +++++||+.+++|....   .||.+|.+|+++.+ ++++|++||..
T Consensus        73 ----~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3          73 ----KHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             ----SCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             ----CcccceeEEEEecCCcEEEeecCCC-----cceeEecCccCcccccc---cccccccccceeeecCCceeeecccc
Confidence                12233333333 3789999998653     35899999999999887   89999999999887 56999999998


Q ss_pred             CCCCccCcEEEEEcCCCcEEEeecCCCC----------------------------------------------------
Q 010571          162 RSRKLLNDVHFLDLETMTWDAVEVTQTP----------------------------------------------------  189 (507)
Q Consensus       162 ~~~~~~~~~~~~d~~t~~W~~~~~~g~~----------------------------------------------------  189 (507)
                      ......++++.||+.+++|..++.....                                                    
T Consensus       141 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~  220 (387)
T d1k3ia3         141 SGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK  220 (387)
T ss_dssp             CSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE
T ss_pred             ccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccc
Confidence            8777889999999999999987532111                                                    


Q ss_pred             --------CCCCCCceEEE-EcCcEEEEEeCCCCCc---CCCcEEEEE-----CCCCcEEeeeecCCCCCCCcceEEEEE
Q 010571          190 --------PAPRYDHSAAL-HANRYLIVFGGCSHSI---FFNDLHVLD-----LQTNEWSQPEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       190 --------p~~r~~~~~~~-~~~~~l~i~GG~~~~~---~~~~i~~~d-----~~~~~W~~~~~~~~~p~~r~~~~~~~~  252 (507)
                              +..+.++++.. ..++++|+|||.....   .......++     .....|..   ...+|.+|..|+++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~r~~~~~~~~  297 (387)
T d1k3ia3         221 RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA---SNGLYFARTFHTSVVL  297 (387)
T ss_dssp             CEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC---TTCCSSCCBSCEEEEC
T ss_pred             cccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceee---ccccccccccceeeec
Confidence                    11111111111 1346789999975432   122233333     23345555   3779999999999888


Q ss_pred             -CCEEEEEeccCCC------CCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccC-C---Cc
Q 010571          253 -DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-G---KY  321 (507)
Q Consensus       253 -~~~l~v~GG~~~~------~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~-~---~~  321 (507)
                       +++|||+||....      .....+++||+.+++|+.++++    |.+|.+|+.+.  +..+..|||+||.. +   ..
T Consensus       298 ~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~----~~~R~~Hs~a~--l~~dG~v~v~GG~~~~~~~~~  371 (387)
T d1k3ia3         298 PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN----SIVRVYHSISL--LLPDGRVFNGGGGLCGDCTTN  371 (387)
T ss_dssp             TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC----SSCCCTTEEEE--ECTTSCEEEEECCCCTTCSCC
T ss_pred             cCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC----CCcccceEEEE--ECCCCEEEEEeCCCcCCCCcc
Confidence             6799999996432      2245689999999999999877    45677776543  32333799999953 2   24


Q ss_pred             CCeEEEEEC
Q 010571          322 NNEVFVMRL  330 (507)
Q Consensus       322 ~~~v~~~~~  330 (507)
                      ..++.+|+|
T Consensus       372 ~~~~e~y~P  380 (387)
T d1k3ia3         372 HFDAQIFTP  380 (387)
T ss_dssp             CCEEEEEEC
T ss_pred             cceEEEEcc
Confidence            677899997

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.94  E-value=5e-25  Score=217.20  Aligned_cols=245  Identities=13%  Similarity=0.137  Sum_probs=176.0

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCC
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      +++|||.+++|..++.. ..|..++.++.+++ ++.||++||..    .+.+.+||+.+++|..++.++           
T Consensus        54 ~~~yd~~t~~w~~~~~~-~~~~~~~~~~~~~~~~g~i~v~Gg~~----~~~~~~yd~~~~~w~~~~~~~-----------  117 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVT-VTKHDMFCPGISMDGNGQIVVTGGND----AKKTSLYDSSSDSWIPGPDMQ-----------  117 (387)
T ss_dssp             EEEECTTTCCBCCCEEE-ECSCCCSSCEEEECTTSCEEEECSSS----TTCEEEEEGGGTEEEECCCCS-----------
T ss_pred             EEEEECCCCcEeecCCC-CCCcccceeEEEEecCCcEEEeecCC----CcceeEecCccCccccccccc-----------
Confidence            56899999999987631 23444555555544 77899999855    357899999999999887664           


Q ss_pred             ccCCCCCccceeeEEE-CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCC------------------------
Q 010571           84 LLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKV------------------------  138 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~------------------------  138 (507)
                           .+|.+|+++.+ +++||++||........++++.||+.+++|..++.....                        
T Consensus       118 -----~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (387)
T d1k3ia3         118 -----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK  192 (387)
T ss_dssp             -----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG
T ss_pred             -----ccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCC
Confidence                 48999999887 679999999887777788999999999999987532100                        


Q ss_pred             ------------------------------------CCCcccceEEE--ECCEEEEEcCcCCCCC--ccCcEEEEEc---
Q 010571          139 ------------------------------------PVARGGHSVTL--VGSRLIIFGGEDRSRK--LLNDVHFLDL---  175 (507)
Q Consensus       139 ------------------------------------p~~r~~~~~~~--~~~~l~~~GG~~~~~~--~~~~~~~~d~---  175 (507)
                                                          +.++.++++..  .++++|++||......  .......++.   
T Consensus       193 G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~  272 (387)
T d1k3ia3         193 GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP  272 (387)
T ss_dssp             GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST
T ss_pred             CCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeeccccccc
Confidence                                                00111111111  2568999999754322  1222333332   


Q ss_pred             --CCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCC------CcCCCcEEEEECCCCcEEeeeecCCCCCCCcce
Q 010571          176 --ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH------SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH  247 (507)
Q Consensus       176 --~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~------~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~  247 (507)
                        ....|..+   +.+|.+|..|+++++.+++|||+||...      ...++.+++||+.+++|+.+   +++|.+|..|
T Consensus       273 ~~~~~~~~~~---~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~---~~~~~~R~~H  346 (387)
T d1k3ia3         273 GTSPNTVFAS---NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ---NPNSIVRVYH  346 (387)
T ss_dssp             TSCCEEEECT---TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC---CCCSSCCCTT
T ss_pred             ccCCCceeec---cccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC---CCCCCcccce
Confidence              22344433   4789999999999998878999999752      24556789999999999997   6789999999


Q ss_pred             EEEEE--CCEEEEEeccCCCC---CcceEEEEEc
Q 010571          248 AGITI--DENWYIVGGGDNNN---GCQETIVLNM  276 (507)
Q Consensus       248 ~~~~~--~~~l~v~GG~~~~~---~~~d~~~~d~  276 (507)
                      +++++  +++|||+||.....   ...++++|+|
T Consensus       347 s~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~P  380 (387)
T d1k3ia3         347 SISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP  380 (387)
T ss_dssp             EEEEECTTSCEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCcCCCCcccceEEEEcc
Confidence            88877  78999999953222   3457899986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.08  E-value=0.08  Score=47.41  Aligned_cols=196  Identities=14%  Similarity=0.072  Sum_probs=92.2

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++++++.|+.+.      .+.+||+.+.......   .++.....-.++.+  ++..++.+|.+..    ..+.+++..+
T Consensus        69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~---~~~~~~~~v~~v~~s~d~~~l~~~~~~~~----~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVHG------NVRIWDTTQTTHILKT---TIPVFSGPVKDISWDSESKRIAAVGEGRE----RFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETTS------EEEEEESSSTTCCEEE---EEECSSSCEEEEEECTTSCEEEEEECCSS----CSEEEEETTT
T ss_pred             CCCeEeccccCc------eEeeeeeecccccccc---ccccccCcccccccccccccccccccccc----cccccccccc
Confidence            666777777532      4888888877643222   11111111122233  3455555554322    2366677766


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEE-c-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--C
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALH-A-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--D  253 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~-~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~  253 (507)
                      .+-...     +......-..+.+ . +..+++.|+.+     ..+.+||..+..-....  .   .....-.++.+  +
T Consensus       136 ~~~~~~-----l~~h~~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~~~~~~--~---~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         136 GTSNGN-----LTGQARAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFKFKSTF--G---EHTKFVHSVRYNPD  200 (311)
T ss_dssp             CCBCBC-----CCCCSSCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBEEEEEE--C---CCSSCEEEEEECTT
T ss_pred             cccccc-----ccccccccccccccccceeeecccccc-----ccccccccccccccccc--c---cccccccccccCcc
Confidence            542211     1111111122223 2 34456667654     35888998876544321  1   11111123333  4


Q ss_pred             CEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          254 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      +.+++.|+.++     .+.+||..+..-...-...... ...+......+.+..+...++.||.+    ..+.++|+.+.
T Consensus       201 ~~~l~~~~~d~-----~v~~~d~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~s~~~~~l~tgs~D----g~v~iwd~~t~  270 (311)
T d1nr0a1         201 GSLFASTGGDG-----TIVLYNGVDGTKTGVFEDDSLK-NVAHSGSVFGLTWSPDGTKIASASAD----KTIKIWNVATL  270 (311)
T ss_dssp             SSEEEEEETTS-----CEEEEETTTCCEEEECBCTTSS-SCSSSSCEEEEEECTTSSEEEEEETT----SEEEEEETTTT
T ss_pred             ccccccccccc-----cccccccccccccccccccccc-cccccccccccccCCCCCEEEEEeCC----CeEEEEECCCC
Confidence            56777776443     3778888766533221111111 11111223333444333456667754    35788887654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.91  E-value=0.088  Score=48.29  Aligned_cols=151  Identities=11%  Similarity=0.173  Sum_probs=78.9

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccc-eeeEEE-CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSD-HCMVKW-GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~  114 (507)
                      ++.++++|+.+     ..+.+||..++++..+.....                .... .+++.. ++++++.||.+.   
T Consensus        18 dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~g----------------H~~~V~~l~fsp~~~~l~s~s~D~---   73 (371)
T d1k8kc_          18 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKE----------------HNGQVTGVDWAPDSNRIVTCGTDR---   73 (371)
T ss_dssp             TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEEC----------------CSSCEEEEEEETTTTEEEEEETTS---
T ss_pred             CCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecC----------------CCCCEEEEEECCCCCEEEEEECCC---
Confidence            55666677632     458899999998887765431                1111 122222 555666666432   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                         .+.++|+.++.|.....   .........++.+  ++..++.|+.+.    .-.++.++.....+........   .
T Consensus        74 ---~i~vWd~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~~~~---~  140 (371)
T d1k8kc_          74 ---NAYVWTLKGRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHIKKP---I  140 (371)
T ss_dssp             ---CEEEEEEETTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEECTT---C
T ss_pred             ---eEEEEeecccccccccc---cccccccccccccccccccceeecccC----cceeeeeecccccccccccccc---c
Confidence               38888999999887652   2222222333333  445566665432    1235555555555554442111   1


Q ss_pred             CCC-ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          193 RYD-HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       193 r~~-~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                      +.. .++...+++.+++.|+.++     .+.+||+...
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~-----~v~v~~~~~~  173 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDF-----KCRIFSAYIK  173 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTS-----CEEEEECCCT
T ss_pred             ccccccccccccccceeccccCc-----EEEEEeeccC
Confidence            111 1223334555677776653     4666776543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.89  E-value=0.11  Score=45.24  Aligned_cols=256  Identities=12%  Similarity=0.041  Sum_probs=126.8

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      .+-++|+.+.+...--..+     ...+++++.  |..||+.++.     .+.+.+||+.++.-...-..          
T Consensus        13 ~v~v~D~~t~~~~~~i~~g-----~~p~~va~spdG~~l~v~~~~-----~~~i~v~d~~t~~~~~~~~~----------   72 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVG-----SNPMGAVISPDGTKVYVANAH-----SNDVSIIDTATNNVIATVPA----------   72 (301)
T ss_dssp             EEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEEGG-----GTEEEEEETTTTEEEEEEEC----------
T ss_pred             EEEEEECCCCeEEEEEECC-----CCceEEEEeCCCCEEEEEECC-----CCEEEEEECCCCceeeeeec----------
Confidence            3568899988776433212     122344444  4568877652     34689999998764332211          


Q ss_pred             CCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEE
Q 010571           82 SGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIF  157 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~  157 (507)
                              ...-+.++..  ++.+++.+..      ...+..++..+++......   .  ......++.. ++ .+++.
T Consensus        73 --------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          73 --------GSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVK---T--GKSPLGLALSPDGKKLYVT  133 (301)
T ss_dssp             --------SSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEE---C--SSSEEEEEECTTSSEEEEE
T ss_pred             --------cccccccccccccccccccccc------cceeeecccccceeeeecc---c--cccceEEEeecCCCeeeee
Confidence                    1112333332  3445554432      2347788888886554431   1  1111222222 33 55554


Q ss_pred             cCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeee
Q 010571          158 GGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI  236 (507)
Q Consensus       158 GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~  236 (507)
                      +..      ...+..++..+.........     ......++... +..+++.+...     ..+..++...........
T Consensus       134 ~~~------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  197 (301)
T d1l0qa2         134 NNG------DKTVSVINTVTKAVINTVSV-----GRSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVK  197 (301)
T ss_dssp             ETT------TTEEEEEETTTTEEEEEEEC-----CSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEE
T ss_pred             ecc------ccceeeeeccccceeeeccc-----CCCceEEEeeccccceeeecccc-----cccccccccceeeeeccc
Confidence            432      23577888887765544321     11112233333 34455544321     346666666665544321


Q ss_pred             cCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEE
Q 010571          237 KGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAF  314 (507)
Q Consensus       237 ~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~  314 (507)
                      .+.     ..+..+..  ++.+|+.+...   ..+.++++|+.+..-...  ++..      ..-...++.+++.+|||.
T Consensus       198 ~~~-----~~~~~~~~~~g~~~~v~~~~~---~~~~v~v~D~~t~~~~~~--~~~~------~~~~~va~spdg~~l~va  261 (301)
T d1l0qa2         198 VEA-----APSGIAVNPEGTKAYVTNVDK---YFNTVSMIDTGTNKITAR--IPVG------PDPAGIAVTPDGKKVYVA  261 (301)
T ss_dssp             CSS-----EEEEEEECTTSSEEEEEEECS---SCCEEEEEETTTTEEEEE--EECC------SSEEEEEECTTSSEEEEE
T ss_pred             ccC-----Ccceeeccccccccccccccc---eeeeeeeeecCCCeEEEE--EcCC------CCEEEEEEeCCCCEEEEE
Confidence            111     11122222  33555543321   234588999888754321  1110      111233344555678887


Q ss_pred             cccCCCcCCeEEEEECCCCC
Q 010571          315 GGYNGKYNNEVFVMRLKPRD  334 (507)
Q Consensus       315 GG~~~~~~~~v~~~~~~~~~  334 (507)
                      ++.+    +.+.++|+.+.+
T Consensus       262 ~~~~----~~i~v~D~~t~~  277 (301)
T d1l0qa2         262 LSFC----NTVSVIDTATNT  277 (301)
T ss_dssp             ETTT----TEEEEEETTTTE
T ss_pred             ECCC----CeEEEEECCCCe
Confidence            7643    578889987653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.58  E-value=0.23  Score=44.21  Aligned_cols=193  Identities=13%  Similarity=0.106  Sum_probs=96.4

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+.+...........                ......++.+  ++..++.+|..... 
T Consensus        69 ~g~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~----------------~~~~v~~v~~s~d~~~l~~~~~~~~~-  126 (311)
T d1nr0a1          69 SGYYCASGDVH-----GNVRIWDTTQTTHILKTTIPV----------------FSGPVKDISWDSESKRIAAVGEGRER-  126 (311)
T ss_dssp             TSSEEEEEETT-----SEEEEEESSSTTCCEEEEEEC----------------SSSCEEEEEECTTSCEEEEEECCSSC-
T ss_pred             CCCeEeccccC-----ceEeeeeeecccccccccccc----------------ccCccccccccccccccccccccccc-
Confidence            55566667643     458889988876543222211                0111122222  45666666643322 


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPA  191 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~  191 (507)
                         .+.+++..+.+-..     .+........++.+   +..+++.|+.+      ..+.+||..+.+-.....  .  .
T Consensus       127 ---~~~v~~~~~~~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d------~~i~i~d~~~~~~~~~~~--~--~  188 (311)
T d1nr0a1         127 ---FGHVFLFDTGTSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDD------NTVAIFEGPPFKFKSTFG--E--H  188 (311)
T ss_dssp             ---SEEEEETTTCCBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETT------SCEEEEETTTBEEEEEEC--C--C
T ss_pred             ---cccccccccccccc-----cccccccccccccccccceeeecccccc------cccccccccccccccccc--c--c
Confidence               26667776653211     11111111222333   23466667653      258889988765444321  1  1


Q ss_pred             CCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcce----EEEEE--CCEEEEEeccCCC
Q 010571          192 PRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH----AGITI--DENWYIVGGGDNN  265 (507)
Q Consensus       192 ~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~----~~~~~--~~~l~v~GG~~~~  265 (507)
                      ...-.++....++.+++.|+.+     +.+.+||+.+..-...-  ........+|    .++.+  +++.++.||.++ 
T Consensus       189 ~~~i~~v~~~p~~~~l~~~~~d-----~~v~~~d~~~~~~~~~~--~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-  260 (311)
T d1nr0a1         189 TKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKTGVF--EDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-  260 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEC--BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-
T ss_pred             cccccccccCcccccccccccc-----ccccccccccccccccc--cccccccccccccccccccCCCCCEEEEEeCCC-
Confidence            1112233444455567777654     45888998776543321  1111111222    23334  457777777543 


Q ss_pred             CCcceEEEEEcCcCee
Q 010571          266 NGCQETIVLNMTKLAW  281 (507)
Q Consensus       266 ~~~~d~~~~d~~~~~W  281 (507)
                          .+.+||..+.+-
T Consensus       261 ----~v~iwd~~t~~~  272 (311)
T d1nr0a1         261 ----TIKIWNVATLKV  272 (311)
T ss_dssp             ----EEEEEETTTTEE
T ss_pred             ----eEEEEECCCCcE
Confidence                478899888764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.32  Score=43.44  Aligned_cols=185  Identities=17%  Similarity=0.081  Sum_probs=91.7

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  114 (507)
                      ++.+++.|+.+     ..+.+||+...+.........                .......+.+  ++.+++.|+..    
T Consensus       108 dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~s~~~d----  162 (337)
T d1gxra_         108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTS----------------SAPACYALAISPDSKVCFSCCSD----  162 (337)
T ss_dssp             TSSEEEEEESS-----SEEEEEECCCC--EEEEEEEC----------------SSSCEEEEEECTTSSEEEEEETT----
T ss_pred             CCCEEEEeecc-----ccccccccccccccccccccc----------------ccccccccccccccccccccccc----
Confidence            44555666633     357888887766554443221                1111122222  45555555532    


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                        ..+..+|..+++-....   ....  ....++.+  ++..++.|+.+      +.+..||+.+.+-.....   ..  
T Consensus       163 --~~i~~~~~~~~~~~~~~---~~~~--~~v~~l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~---~~--  224 (337)
T d1gxra_         163 --GNIAVWDLHNQTLVRQF---QGHT--DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---FT--  224 (337)
T ss_dssp             --SCEEEEETTTTEEEEEE---CCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---CS--
T ss_pred             --ccccccccccccccccc---cccc--ccccccccccccccccccccc------ccccccccccceeecccc---cc--
Confidence              23888898887644433   1111  11122222  44566666543      358889988765322221   11  


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcce
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQE  270 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d  270 (507)
                      ..-.+++...++.+++.|+.+     ..+.+||+.+..-....  .  .  ......+.+  +++.++.|+.++     .
T Consensus       225 ~~i~~l~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~--~--~--~~~i~~v~~s~~g~~l~s~s~Dg-----~  288 (337)
T d1gxra_         225 SQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLH--L--H--ESCVLSLKFAYCGKWFVSTGKDN-----L  288 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEEC--C--C--SSCEEEEEECTTSSEEEEEETTS-----E
T ss_pred             cceEEEEEcccccccceeccc-----ccccccccccccccccc--c--c--ccccceEEECCCCCEEEEEeCCC-----e
Confidence            111233333455566666654     45888998876644321  1  1  111122333  556777776442     4


Q ss_pred             EEEEEcCcCe
Q 010571          271 TIVLNMTKLA  280 (507)
Q Consensus       271 ~~~~d~~~~~  280 (507)
                      +.+||..+..
T Consensus       289 i~iwd~~~~~  298 (337)
T d1gxra_         289 LNAWRTPYGA  298 (337)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCC
Confidence            7788876653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.30  E-value=0.22  Score=44.05  Aligned_cols=276  Identities=13%  Similarity=0.005  Sum_probs=125.3

Q ss_pred             CCCCeEeeCCCCCeE-EeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCc
Q 010571            2 DSGSWHLELPYDLWV-TLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADK   78 (507)
Q Consensus         2 ~~~~~~~d~~~~~W~-~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~   78 (507)
                      |+-+.++|+.+.+=. .++...   ....-+++++.  |..||+.|+.     ...+.+||..+++....-.....    
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~---~~~~~~~i~~spDg~~l~v~~~~-----~~~v~v~D~~t~~~~~~~~~~~~----   77 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECCBT----
T ss_pred             CCEEEEEECCCCeEEEEEECCC---CCCCccEEEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEecCCC----
Confidence            344668898876543 333211   11222344443  4568887653     24699999999876543322210    


Q ss_pred             cccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCC-----CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-
Q 010571           79 TEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-  150 (507)
Q Consensus        79 ~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~-----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-  150 (507)
                              .......+.++..  ++.+|+.+.......     ....+..+|..+..-.....   .+  ...+.++.- 
T Consensus        78 --------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~--~~~~~~~~s~  144 (337)
T d1pbyb_          78 --------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE---AP--RQITMLAWAR  144 (337)
T ss_dssp             --------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE---CC--SSCCCEEECT
T ss_pred             --------cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc---cc--CCceEEEEcC
Confidence                    0001111122222  445555543211111     23457888888876444331   11  111222322 


Q ss_pred             CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc----eE--EEEcCc---EEEEEeCCCCC-----
Q 010571          151 GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH----SA--ALHANR---YLIVFGGCSHS-----  215 (507)
Q Consensus       151 ~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~----~~--~~~~~~---~l~i~GG~~~~-----  215 (507)
                      ++ .+|+.++         +...+|+.+.+-......+..+......    .+  ......   ...........     
T Consensus       145 dg~~l~~~~~---------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (337)
T d1pbyb_         145 DGSKLYGLGR---------DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT  215 (337)
T ss_dssp             TSSCEEEESS---------SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred             CCCEEEEEcC---------CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeec
Confidence            33 5555432         4667787766533332221111110000    00  000011   11122222111     


Q ss_pred             cCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCC
Q 010571          216 IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLAS  295 (507)
Q Consensus       216 ~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~  295 (507)
                      .....+..++..++.+.....   .+.......+....+..+++++      .+.+.++|+.+.........+.      
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~i~v~d~~~~~~~~~~~~~~------  280 (337)
T d1pbyb_         216 AYRTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNASIKRVPLPH------  280 (337)
T ss_dssp             GEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTEEEEEEECSS------
T ss_pred             ccCccEEEEEcCCCcEEEEEe---cCCCcceEEEEecccceEEEEc------cccEEEEECCCCcEEEEEcCCC------
Confidence            112347788888877665432   2223333333333333333333      1368899999887655333221      


Q ss_pred             CCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          296 EGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       296 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                        ...+....+++..||+ |+.    .+.+.+||..+.
T Consensus       281 --~~~~~~~s~dG~~l~v-~~~----~~~i~v~D~~t~  311 (337)
T d1pbyb_         281 --SYYSVNVSTDGSTVWL-GGA----LGDLAAYDAETL  311 (337)
T ss_dssp             --CCCEEEECTTSCEEEE-ESB----SSEEEEEETTTC
T ss_pred             --CEEEEEECCCCCEEEE-EeC----CCcEEEEECCCC
Confidence              1123334455566666 554    356899998764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.61  Score=42.06  Aligned_cols=199  Identities=14%  Similarity=0.087  Sum_probs=88.9

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETM  178 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~  178 (507)
                      ++++++.|+.+.      .+.++|..++.......   ..... -.++... ++..++.|+.      ...+..+|..+.
T Consensus       132 ~~~~l~s~~~dg------~v~i~~~~~~~~~~~~~---~h~~~-v~~~~~~~~~~~~~~~~~------~~~i~~~d~~~~  195 (388)
T d1erja_         132 DGKFLATGAEDR------LIRIWDIENRKIVMILQ---GHEQD-IYSLDYFPSGDKLVSGSG------DRTVRIWDLRTG  195 (388)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEEC---CCSSC-EEEEEECTTSSEEEEEET------TSEEEEEETTTT
T ss_pred             CCCcceeccccc------ccccccccccccccccc---ccccc-cccccccccccccccccc------ceeeeeeecccc
Confidence            566677776432      38889988887655431   11111 1111222 3344555543      235888888776


Q ss_pred             cEEEeecCCCCCCCCCCceEEEE-cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecC-CC-CCCCcceEEEEE--C
Q 010571          179 TWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG-DL-VTGRAGHAGITI--D  253 (507)
Q Consensus       179 ~W~~~~~~g~~p~~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~-~~-p~~r~~~~~~~~--~  253 (507)
                      .-......     .....++... .++.+++.|+.+     +.+.++|..+.......... .. ......-.++.+  +
T Consensus       196 ~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~  265 (388)
T d1erja_         196 QCSLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD  265 (388)
T ss_dssp             EEEEEEEC-----SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred             cccccccc-----ccccccccccCCCCCeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence            55444321     1111122222 344567777654     45888998877654421111 11 111111122333  4


Q ss_pred             CEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCC----CCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEE
Q 010571          254 ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRN----PLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR  329 (507)
Q Consensus       254 ~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~  329 (507)
                      +..++.|+.++     .+.+||+.+..-......+...    ....+......+.+..+..+++.|+.+    ..+.++|
T Consensus       266 ~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d----g~i~vwd  336 (388)
T d1erja_         266 GQSVVSGSLDR-----SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD----RGVLFWD  336 (388)
T ss_dssp             SSEEEEEETTS-----EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT----SEEEEEE
T ss_pred             CCEEEEEECCC-----cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC----CEEEEEE
Confidence            56667766443     4667776554322111110000    000011122333343334456667654    4588888


Q ss_pred             CCCC
Q 010571          330 LKPR  333 (507)
Q Consensus       330 ~~~~  333 (507)
                      +.+.
T Consensus       337 ~~~~  340 (388)
T d1erja_         337 KKSG  340 (388)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            7654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=95.76  E-value=0.13  Score=45.90  Aligned_cols=56  Identities=13%  Similarity=0.110  Sum_probs=33.9

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCcee
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWS   66 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~   66 (507)
                      +.+.+||+.+++=..-.   .+|....-++++..  |..+|+.+..+     +.+.+||+.++.=.
T Consensus        18 ~~v~v~D~~t~~~~~t~---~~~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~~   75 (346)
T d1jmxb_          18 NNLHVVDVASDTVYKSC---VMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNT   75 (346)
T ss_dssp             TEEEEEETTTTEEEEEE---ECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEE---EcCCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCeee
Confidence            44568899888644321   13333333455544  45678776532     56899999987544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.58  Score=40.88  Aligned_cols=157  Identities=15%  Similarity=0.128  Sum_probs=78.8

Q ss_pred             eeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEE
Q 010571           94 HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL  173 (507)
Q Consensus        94 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~  173 (507)
                      ......++..++.|+.+.      .+.+||+.+.+-.....   ..  .....++...+.+++.|+.+      ..+.+|
T Consensus       180 ~~~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~---~~--~~~v~~~~~~~~~l~s~s~d------~~i~iw  242 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLT---GH--QSLTSGMELKDNILVSGNAD------STVKIW  242 (342)
T ss_dssp             EEEEEECSSEEEEEETTS------CEEEEETTTCCEEEEEC---CC--CSCEEEEEEETTEEEEEETT------SCEEEE
T ss_pred             cccccCCCCEEEEEeCCC------eEEEeecccceeeeEec---cc--ccceeEEecCCCEEEEEcCC------CEEEEE
Confidence            344455676777776542      38889988876443321   11  11122333444556666643      358999


Q ss_pred             EcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-eeecCCCCCCCcceEEEEE
Q 010571          174 DLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGRAGHAGITI  252 (507)
Q Consensus       174 d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r~~~~~~~~  252 (507)
                      |+.+.+-...-.  ..........+....++ +++.|+.+     ..|.+||+.+++... +.. ...+.....-.++.+
T Consensus       243 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~s~s~D-----g~i~iwd~~tg~~i~~~~~-~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         243 DIKTGQCLQTLQ--GPNKHQSAVTCLQFNKN-FVITSSDD-----GTVKLWDLKTGEFIRNLVT-LESGGSGGVVWRIRA  313 (342)
T ss_dssp             ETTTCCEEEEEC--STTSCSSCEEEEEECSS-EEEEEETT-----SEEEEEETTTCCEEEEEEE-CTTGGGTCEEEEEEE
T ss_pred             eccccccccccc--ccceeeeceeecccCCC-eeEEEcCC-----CEEEEEECCCCCEEEEEec-ccCCCCCCCEEEEEE
Confidence            988766544331  11111222233334444 66777754     358899998876543 211 111111111122333


Q ss_pred             -CC-EEEEEeccCCCCCcceEEEEEcC
Q 010571          253 -DE-NWYIVGGGDNNNGCQETIVLNMT  277 (507)
Q Consensus       253 -~~-~l~v~GG~~~~~~~~d~~~~d~~  277 (507)
                       .+ .+++.|+.++. ....++++|.+
T Consensus       314 s~~~~~la~g~~dGt-~~~~l~~~Df~  339 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGT-EETKLLVLDFD  339 (342)
T ss_dssp             CSSEEEEEEECSSSS-SCCEEEEEECC
T ss_pred             CCCCCEEEEEeCCCC-CeeEEEEEeCC
Confidence             33 45566654433 22346777754

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.6  Score=40.77  Aligned_cols=197  Identities=15%  Similarity=0.198  Sum_probs=107.4

Q ss_pred             EEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcC
Q 010571           97 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE  176 (507)
Q Consensus        97 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~  176 (507)
                      .......++.|+..      ..+..+|+....-....     ............++..++.|+.+      ..+..||+.
T Consensus       143 ~~~~~~~~~~~~~d------~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~~~d------g~i~~~d~~  205 (342)
T d2ovrb2         143 VQYDGRRVVSGAYD------FMVKVWDPETETCLHTL-----QGHTNRVYSLQFDGIHVVSGSLD------TSIRVWDVE  205 (342)
T ss_dssp             EEECSSCEEEEETT------SCEEEEEGGGTEEEEEE-----CCCSSCEEEEEECSSEEEEEETT------SCEEEEETT
T ss_pred             eccccceeeeecCC------CeEEEeecccceeeEEE-----cCcccccccccCCCCEEEEEeCC------CeEEEeecc
Confidence            33444455555532      23677777665433221     11112223344566666777654      258899988


Q ss_pred             CCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEE
Q 010571          177 TMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW  256 (507)
Q Consensus       177 t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l  256 (507)
                      +.+-..... +    ......++...++ +++.|+.+     ..+.+||+....-...-. + .........+...++.+
T Consensus       206 ~~~~~~~~~-~----~~~~v~~~~~~~~-~l~s~s~d-----~~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  272 (342)
T d2ovrb2         206 TGNCIHTLT-G----HQSLTSGMELKDN-ILVSGNAD-----STVKIWDIKTGQCLQTLQ-G-PNKHQSAVTCLQFNKNF  272 (342)
T ss_dssp             TCCEEEEEC-C----CCSCEEEEEEETT-EEEEEETT-----SCEEEEETTTCCEEEEEC-S-TTSCSSCEEEEEECSSE
T ss_pred             cceeeeEec-c----cccceeEEecCCC-EEEEEcCC-----CEEEEEeccccccccccc-c-cceeeeceeecccCCCe
Confidence            776544331 1    1111223344455 66666654     468899987765443211 1 11222333445567788


Q ss_pred             EEEeccCCCCCcceEEEEEcCcCeeEE-eccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          257 YIVGGGDNNNGCQETIVLNMTKLAWSI-LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~~~W~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      ++.|+.++     .+.++|+.+..... +.....    ..+......+...++..+++.|+.++.....++.+|...
T Consensus       273 ~~s~s~Dg-----~i~iwd~~tg~~i~~~~~~~~----~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         273 VITSSDDG-----TVKLWDLKTGEFIRNLVTLES----GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEETTS-----EEEEEETTTCCEEEEEEECTT----GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             eEEEcCCC-----EEEEEECCCCCEEEEEecccC----CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            88887543     47899998876432 222211    111222444455566678888988887777788888753

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.51  E-value=1.2  Score=43.12  Aligned_cols=132  Identities=15%  Similarity=0.079  Sum_probs=77.2

Q ss_pred             cceEEEECCEEEEEcCCCCCccCCceEEEECCCC--ceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEc
Q 010571           30 KHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILG  107 (507)
Q Consensus        30 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~G  107 (507)
                      ..+-+++++.||+-..      ...++.+|..|+  .|+.-+.....        ..............+..+++||+..
T Consensus        59 ~stPiv~~g~vyv~t~------~~~v~AlDa~tG~~lW~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~  124 (560)
T d1kv9a2          59 EATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKV--------KARTSCCDAVNRGVALWGDKVYVGT  124 (560)
T ss_dssp             CCCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGG--------GGGGCTTCSCCCCCEEEBTEEEEEC
T ss_pred             EeCCEEECCEEEEECC------CCeEEEEeCCCCCEEEEECCCCCcc--------ccccccccccccCcceeCCeEEEEe
Confidence            3555778999998755      357999999998  48754322110        0011122233445667788888864


Q ss_pred             ccCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEe
Q 010571          108 GHYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAV  183 (507)
Q Consensus       108 G~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~  183 (507)
                      .       ...++.+|..|++  |+.... +..+......+-+++++.+++- +..........+..||..|++  |+.-
T Consensus       125 ~-------~g~l~Alda~tG~~~w~~~~~-~~~~~~~~~~~p~v~~~~vivg-~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         125 L-------DGRLIALDAKTGKAIWSQQTT-DPAKPYSITGAPRVVKGKVIIG-NGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             T-------TSEEEEEETTTCCEEEEEECS-CTTSSCBCCSCCEEETTEEEEC-CBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             C-------CCEEEEEECCCCcEEeccCcc-CcccceeeeeeeeeecCccccc-ccceeccccceEEEEECCCceEEeeee
Confidence            3       2348899988874  655431 1222222233445567777653 332222234579999999875  7765


Q ss_pred             e
Q 010571          184 E  184 (507)
Q Consensus       184 ~  184 (507)
                      .
T Consensus       196 t  196 (560)
T d1kv9a2         196 T  196 (560)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.50  E-value=0.82  Score=41.32  Aligned_cols=230  Identities=12%  Similarity=0.069  Sum_probs=109.4

Q ss_pred             CeEeeCCCCCeEEeccCCCCC-CccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            5 SWHLELPYDLWVTLPVSGARP-SPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      +-+||...+.+..+..   +. ....=.+++.. ++.+++.||.+     ..+.++|+.++.|........         
T Consensus        31 i~iw~~~~~~~~~~~~---l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~---------   93 (371)
T d1k8kc_          31 VHIYEKSGNKWVQVHE---LKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILR---------   93 (371)
T ss_dssp             EEEEEEETTEEEEEEE---EECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECCC---------
T ss_pred             EEEEECCCCCEEEEEE---ecCCCCCEEEEEECCCCCEEEEEECC-----CeEEEEeeccccccccccccc---------
Confidence            4577877787776652   11 11111233333 45555666633     358899999999887655431         


Q ss_pred             CccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEc
Q 010571           83 GLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFG  158 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~G  158 (507)
                             .......+.+  +++.++.|+.+.    .-.++.++.....+.....   ....+....++.+  ++.+++.|
T Consensus        94 -------~~~~v~~i~~~p~~~~l~~~s~d~----~i~i~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          94 -------INRAARCVRWAPNEKKFAVGSGSR----VISICYFEQENDWWVCKHI---KKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             -------CSSCEEEEEECTTSSEEEEEETTS----SEEEEEEETTTTEEEEEEE---CTTCCSCEEEEEECTTSSEEEEE
T ss_pred             -------ccccccccccccccccceeecccC----cceeeeeeccccccccccc---ccccccccccccccccccceecc
Confidence                   1222223333  555566665332    2346666666665654432   1112222223333  44666677


Q ss_pred             CcCCCCCccCcEEEEEcCCCcEEEeec---------CCCC-----CCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEE
Q 010571          159 GEDRSRKLLNDVHFLDLETMTWDAVEV---------TQTP-----PAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       159 G~~~~~~~~~~~~~~d~~t~~W~~~~~---------~g~~-----p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~  224 (507)
                      +.+.      .+..||...........         .+..     ...-.-++++...++..++.|+.+     ..+.++
T Consensus       160 s~D~------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----~~i~iw  228 (371)
T d1k8kc_         160 SCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLA  228 (371)
T ss_dssp             ETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEE
T ss_pred             ccCc------EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-----CcceEE
Confidence            6542      46667665432211100         0000     001111223333444466667654     457888


Q ss_pred             ECCCCcEEe-eeecCCCCCCCcceEEE-EECCEEEEEeccCCCCCcceEEEEEcCcCeeEEec
Q 010571          225 DLQTNEWSQ-PEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT  285 (507)
Q Consensus       225 d~~~~~W~~-~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~  285 (507)
                      |+.+..=.. +.. ...|    -.+++ .-++.+++ +|.++   ...++.++.....|....
T Consensus       229 d~~~~~~~~~~~~-~~~~----v~s~~fs~d~~~la-~g~d~---~~~~~~~~~~~~~~~~~~  282 (371)
T d1k8kc_         229 DADKKMAVATLAS-ETLP----LLAVTFITESSLVA-AGHDC---FPVLFTYDSAAGKLSFGG  282 (371)
T ss_dssp             EGGGTTEEEEEEC-SSCC----EEEEEEEETTEEEE-EETTS---SCEEEEEETTTTEEEECC
T ss_pred             eeecccceeeeec-cccc----ceeeeecCCCCEEE-EEcCC---ceEEEEeeCCCceEEEee
Confidence            876654222 110 1111    11222 23566555 45432   234677887777776543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.99  Score=39.99  Aligned_cols=187  Identities=16%  Similarity=0.087  Sum_probs=90.7

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      ++..++.|+.+      ..+.+||....+.....   .++..........+  ++.+++.|+.+      ..+..+|+.+
T Consensus       108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEA------STLSIWDLAAPTPRIKA---ELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEE---EEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTT
T ss_pred             CCCEEEEeecc------ccccccccccccccccc---ccccccccccccccccccccccccccc------cccccccccc
Confidence            56666777643      24888888776655443   11111111122223  34455555432      3588899887


Q ss_pred             CcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE-CCEE
Q 010571          178 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENW  256 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l  256 (507)
                      .+-......    ......+++...++..++.|+.+     ..+.+||+.+..-....   ..+  ..-.+++.. ++..
T Consensus       173 ~~~~~~~~~----~~~~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~---~~~--~~i~~l~~~~~~~~  238 (337)
T d1gxra_         173 QTLVRQFQG----HTDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQH---DFT--SQIFSLGYCPTGEW  238 (337)
T ss_dssp             TEEEEEECC----CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEE---ECS--SCEEEEEECTTSSE
T ss_pred             ccccccccc----ccccccccccccccccccccccc-----ccccccccccceeeccc---ccc--cceEEEEEcccccc
Confidence            764443311    11111223333445466667654     45888998776532211   011  111122222 4567


Q ss_pred             EEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          257 YIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       257 ~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      ++.|+.++     .+.++|+.+..-.....-         ......+.+..++.+++.||.+    ..+..+|....
T Consensus       239 l~~~~~d~-----~i~i~d~~~~~~~~~~~~---------~~~i~~v~~s~~g~~l~s~s~D----g~i~iwd~~~~  297 (337)
T d1gxra_         239 LAVGMESS-----NVEVLHVNKPDKYQLHLH---------ESCVLSLKFAYCGKWFVSTGKD----NLLNAWRTPYG  297 (337)
T ss_dssp             EEEEETTS-----CEEEEETTSSCEEEECCC---------SSCEEEEEECTTSSEEEEEETT----SEEEEEETTTC
T ss_pred             cceecccc-----cccccccccccccccccc---------ccccceEEECCCCCEEEEEeCC----CeEEEEECCCC
Confidence            77776443     477888877654332111         1122233333333455666654    45777776543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.09  E-value=0.98  Score=39.63  Aligned_cols=206  Identities=10%  Similarity=-0.031  Sum_probs=103.9

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCc
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL   84 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~   84 (507)
                      .|.||+.++.-....    +|. +.+..+..-++.+++...       +.++.||+.+++++.+.....           
T Consensus        42 I~r~d~~~g~~~~~~----~~~-~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~~~~l~~~~~-----------   98 (295)
T d2ghsa1          42 LHELHLASGRKTVHA----LPF-MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELES-----------   98 (295)
T ss_dssp             EEEEETTTTEEEEEE----CSS-CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSST-----------
T ss_pred             EEEEECCCCeEEEEE----CCC-CcEEEEEecCCCEEEEEe-------CccEEeecccceeeEEeeeec-----------
Confidence            567777777655443    222 222222233666766432       459999999999988765331           


Q ss_pred             cCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCC
Q 010571           85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDR  162 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~  162 (507)
                       ..+..|.....+.-++.||+.--.....  ...-..|....++...+..  .+.  ... ..+..  ++.+|+..-   
T Consensus        99 -~~~~~~~nd~~vd~~G~iw~~~~~~~~~--~~~g~l~~~~~g~~~~~~~--~~~--~~N-g~~~s~d~~~l~~~dt---  167 (295)
T d2ghsa1          99 -DLPGNRSNDGRMHPSGALWIGTMGRKAE--TGAGSIYHVAKGKVTKLFA--DIS--IPN-SICFSPDGTTGYFVDT---  167 (295)
T ss_dssp             -TCTTEEEEEEEECTTSCEEEEEEETTCC--TTCEEEEEEETTEEEEEEE--EES--SEE-EEEECTTSCEEEEEET---
T ss_pred             -CCCcccceeeEECCCCCEEEEecccccc--ccceeEeeecCCcEEEEee--ccC--Ccc-eeeecCCCceEEEeec---
Confidence             2222344444444467777754332222  2223344445565555432  111  111 12222  335666532   


Q ss_pred             CCCccCcEEEEEcCCC-------cEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeee
Q 010571          163 SRKLLNDVHFLDLETM-------TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       163 ~~~~~~~~~~~d~~t~-------~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                         ..+.++.|++...       ........+..   -.-.++++-.++.||+..-..     ..|.+||+.......+.
T Consensus       168 ---~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~---g~pdG~~vD~~GnlWva~~~~-----g~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         168 ---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGE-----GAVDRYDTDGNHIARYE  236 (295)
T ss_dssp             ---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETT-----TEEEEECTTCCEEEEEE
T ss_pred             ---ccceeeEeeecccccccccceEEEeccCccc---ccccceEEcCCCCEEeeeeCC-----CceEEecCCCcEeeEec
Confidence               2456888876421       22222221111   111345555666788763111     46999999877777653


Q ss_pred             ecCCCCCCCcceEEEEEC----CEEEEEec
Q 010571          236 IKGDLVTGRAGHAGITID----ENWYIVGG  261 (507)
Q Consensus       236 ~~~~~p~~r~~~~~~~~~----~~l~v~GG  261 (507)
                          +|.++  .++++++    +.|||...
T Consensus       237 ----lP~~~--~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         237 ----VPGKQ--TTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             ----CSCSB--EEEEEEESTTSCEEEEEEB
T ss_pred             ----CCCCc--eEEEEEeCCCCCEEEEEEC
Confidence                34332  3555553    35777644

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.86  E-value=1  Score=38.76  Aligned_cols=110  Identities=23%  Similarity=0.212  Sum_probs=60.5

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCc
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE  230 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~  230 (507)
                      ++.+++.|+.+      ..+..||+.+.+.........   ...-.+++...++..++.|+.+     ..+.+||+.++.
T Consensus       147 ~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~  212 (299)
T d1nr0a2         147 DKQFVAVGGQD------SKVHVYKLSGASVSEVKTIVH---PAEITSVAFSNNGAFLVATDQS-----RKVIPYSVANNF  212 (299)
T ss_dssp             TSCEEEEEETT------SEEEEEEEETTEEEEEEEEEC---SSCEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTT
T ss_pred             ccccccccccc------ccccccccccccccccccccc---cccccccccccccccccccccc-----cccccccccccc
Confidence            45667777653      358899988777655442211   1111233333455466666654     358899988766


Q ss_pred             EEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCee
Q 010571          231 WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       231 W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  281 (507)
                      .....  .........-.++.+  ++.+++.||.++     .+.+||+.+...
T Consensus       213 ~~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~~~~~  258 (299)
T d1nr0a2         213 ELAHT--NSWTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMNKPSD  258 (299)
T ss_dssp             EESCC--CCCCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCTTS
T ss_pred             ccccc--ccccccccccccccccccccceEEEcCCC-----EEEEEECCCCCc
Confidence            54421  112222222233333  567777887553     378888876643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=94.82  E-value=1  Score=38.56  Aligned_cols=225  Identities=16%  Similarity=0.085  Sum_probs=110.1

Q ss_pred             EEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCc
Q 010571           39 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDS  116 (507)
Q Consensus        39 ~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  116 (507)
                      ++||.+..     .+.+.++|+.+++....-..+                  ..-+.++..  +.+||+.++.      .
T Consensus         3 ~~yV~~~~-----~~~v~v~D~~t~~~~~~i~~g------------------~~p~~va~spdG~~l~v~~~~------~   53 (301)
T d1l0qa2           3 FAYIANSE-----SDNISVIDVTSNKVTATIPVG------------------SNPMGAVISPDGTKVYVANAH------S   53 (301)
T ss_dssp             EEEEEETT-----TTEEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSSEEEEEEGG------G
T ss_pred             EEEEEECC-----CCEEEEEECCCCeEEEEEECC------------------CCceEEEEeCCCCEEEEEECC------C
Confidence            57777652     245899999999765533322                  111233332  4568877653      2


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEE-CC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~  194 (507)
                      +.+.+||+.+++-....     +....-+.++.. ++ .+++.+..      ...+..++..+.+....-..     ...
T Consensus        54 ~~i~v~d~~t~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-----~~~  117 (301)
T d1l0qa2          54 NDVSIIDTATNNVIATV-----PAGSSPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVKT-----GKS  117 (301)
T ss_dssp             TEEEEEETTTTEEEEEE-----ECSSSEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEEC-----SSS
T ss_pred             CEEEEEECCCCceeeee-----eccccccccccccccccccccccc------cceeeecccccceeeeeccc-----ccc
Confidence            35999999988654332     111112233332 23 45554432      23577888887765444321     112


Q ss_pred             CceEEEEcCc-EEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE-CC-EEEEEeccCCCCCcceE
Q 010571          195 DHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DE-NWYIVGGGDNNNGCQET  271 (507)
Q Consensus       195 ~~~~~~~~~~-~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~d~  271 (507)
                      .+.++...++ .+++.+..+     ..+..++..+........  ...   ..+..+.. ++ .+++.+. .    ....
T Consensus       118 ~~~~~~~~dg~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~-~----~~~~  182 (301)
T d1l0qa2         118 PLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKAVINTVS--VGR---SPKGIAVTPDGTKVYVANF-D----SMSI  182 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEE--CCS---SEEEEEECTTSSEEEEEET-T----TTEE
T ss_pred             ceEEEeecCCCeeeeeeccc-----cceeeeeccccceeeecc--cCC---CceEEEeeccccceeeecc-c----cccc
Confidence            2334444344 444444332     457788887776554311  111   11122222 33 4454433 2    1235


Q ss_pred             EEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          272 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       272 ~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      .+++..............        .........++..+++.+..  ...+.++++|+.+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~v~~~~--~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         183 SVIDTVTNSVIDTVKVEA--------APSGIAVNPEGTKAYVTNVD--KYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEETTTTEEEEEEECSS--------EEEEEEECTTSSEEEEEEEC--SSCCEEEEEETTTT
T ss_pred             ccccccceeeeecccccC--------Ccceeecccccccccccccc--ceeeeeeeeecCCC
Confidence            566666655544322211        11222334445566665432  22456888888654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.96  E-value=0.82  Score=40.46  Aligned_cols=142  Identities=12%  Similarity=0.005  Sum_probs=76.1

Q ss_pred             eEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          118 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       118 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      .++++|..++...++.   .  ..+.  .++.+  +++.++++|.+..    ..++++|..++.-..+..     ....-
T Consensus        25 ~v~v~d~~~~~~~~~~---~--~~~v--~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~-----~~~~v   88 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVP---E--PLRI--RYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEE-----NLGNV   88 (360)
T ss_dssp             EEEEECTTSSBEEECS---C--CSCE--EEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCC-----CCCSE
T ss_pred             eEEEEECCCCcEEEcc---C--CCCE--EEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeC-----CCceE
Confidence            4777777777766552   1  1222  22333  5666655554322    248899999988776541     12222


Q ss_pred             ceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCC-----CCcce
Q 010571          196 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN-----NGCQE  270 (507)
Q Consensus       196 ~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----~~~~d  270 (507)
                      ..++...++..+++++..     ..++.++..+.....+..   .........+..-+++.+++.+....     .....
T Consensus        89 ~~~~~spdg~~l~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          89 FAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             EEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             Eeeeecccccccceeccc-----cccccccccccceeeeee---cccccccchhhccceeeeeeeccccccceeeccccc
Confidence            344455566566666654     468899998877655422   11111111222235566655543222     12335


Q ss_pred             EEEEEcCcCeeEE
Q 010571          271 TIVLNMTKLAWSI  283 (507)
Q Consensus       271 ~~~~d~~~~~W~~  283 (507)
                      ++++|+.+..=..
T Consensus       161 ~~v~d~~~~~~~~  173 (360)
T d1k32a3         161 IHVYDMEGRKIFA  173 (360)
T ss_dssp             EEEEETTTTEEEE
T ss_pred             eeeeccccCceee
Confidence            7788888765433

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.92  E-value=1.1  Score=39.79  Aligned_cols=196  Identities=10%  Similarity=-0.030  Sum_probs=95.8

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCC
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSG   83 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~   83 (507)
                      .+.|||..........    +....-++++.. ++.||+..-.. ......+..++..+...........          
T Consensus        63 I~ri~p~g~~~~~~~~----~~~~~p~gla~~~dG~l~va~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~----------  127 (319)
T d2dg1a1          63 IFKINPETKEIKRPFV----SHKANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQDIIEDLS----------  127 (319)
T ss_dssp             EEEECTTTCCEEEEEE----CSSSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEEEECSSS----------
T ss_pred             EEEEECCCCeEEEEEe----CCCCCeeEEEECCCCCEEEEecCC-CccceeEEEEcCCCceeeeeccCCC----------
Confidence            3456665554433321    111223444443 56788763211 1223457888888776655443211          


Q ss_pred             ccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcC
Q 010571           84 LLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGED  161 (507)
Q Consensus        84 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~  161 (507)
                          ...+..-.++.-++.||+..-..........++.+++.......+..  .+..+   ..++.-  ++.||+.--  
T Consensus       128 ----~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--~~~~p---nGia~s~dg~~lyvad~--  196 (319)
T d2dg1a1         128 ----TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVA---NGIALSTDEKVLWVTET--  196 (319)
T ss_dssp             ----SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSE---EEEEECTTSSEEEEEEG--
T ss_pred             ----cccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee--cccee---eeeeeccccceEEEecc--
Confidence                11222223333367788753222222235579999998887776542  11111   112221  346777632  


Q ss_pred             CCCCccCcEEEEEcCCCc---EEEeec-CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeee
Q 010571          162 RSRKLLNDVHFLDLETMT---WDAVEV-TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPE  235 (507)
Q Consensus       162 ~~~~~~~~~~~~d~~t~~---W~~~~~-~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~  235 (507)
                          ..+.++.|++....   ...... .........-..+++-.++.|||..-..     +.|.+||+....-..+.
T Consensus       197 ----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~-----g~V~~~~p~G~~l~~i~  265 (319)
T d2dg1a1         197 ----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLVFNKRGYPIGQIL  265 (319)
T ss_dssp             ----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEEECTTSCEEEEEE
T ss_pred             ----cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC-----CEEEEECCCCcEEEEEe
Confidence                35579999875431   111100 0001101111245665667788864321     56999998755454443

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.92  Score=36.99  Aligned_cols=153  Identities=11%  Similarity=0.054  Sum_probs=82.6

Q ss_pred             eeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecC---CCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCc
Q 010571           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS---GKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        95 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~---g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~  169 (507)
                      +++.+++.+|+|=|.        .+|.++.....+......   ..+|... . ++...  ++.+|+|-|.        .
T Consensus        13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~~I-D-AAf~~~~~~~~yffkg~--------~   74 (192)
T d1pexa_          13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNRI-D-AAYEHPSHDLIFIFRGR--------K   74 (192)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSSC-C-EEEEETTTTEEEEEETT--------E
T ss_pred             EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCCcc-c-ceEEEcCCCEEEEEcCC--------E
Confidence            566789999999663        267776555444433221   1233322 1 22222  5688888764        4


Q ss_pred             EEEEEcCCCcEE---EeecCCCCCCCCCCc-eEEEE-cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-----eeec-C
Q 010571          170 VHFLDLETMTWD---AVEVTQTPPAPRYDH-SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK-G  238 (507)
Q Consensus       170 ~~~~d~~t~~W~---~~~~~g~~p~~r~~~-~~~~~-~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~-~  238 (507)
                      +++|+-.+...-   .+...+ .|.+...- ++... .++++|+|-|       +..|.||..++.-..     +... +
T Consensus        75 ~w~y~~~~~~~gyPk~i~~~~-~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~  146 (192)
T d1pexa_          75 FWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP  146 (192)
T ss_dssp             EEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred             EEEEcCCcccCCCCeEeeeee-cCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCC
Confidence            677765443321   121111 12221112 23333 4578999988       678999987654321     1100 1


Q ss_pred             CCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeE
Q 010571          239 DLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       239 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  282 (507)
                      .+|  -.-.++...++.+|+|-|.       ..|.||..+.+-.
T Consensus       147 gvp--~~vdAa~~~~g~~YfF~g~-------~y~r~~~~~~~v~  181 (192)
T d1pexa_         147 GIG--DKVDAVYEKNGYIYFFNGP-------IQFEYSIWSNRIV  181 (192)
T ss_dssp             TSC--SCCSEEEEETTEEEEEETT-------EEEEEETTTTEEE
T ss_pred             CCC--CCceEEEEeCCEEEEEECC-------EEEEEeCCcCeEc
Confidence            122  2223555668999999662       5788888776543

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=1.3  Score=35.96  Aligned_cols=157  Identities=12%  Similarity=0.053  Sum_probs=80.1

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE-ECCEEEEEcccC
Q 010571           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHY  110 (507)
Q Consensus        32 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  110 (507)
                      +++.+++.+|+|=|       .-+|.++.....+...+.....          ...| .....+... .++++|+|-|. 
T Consensus        13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w----------~~lp-~~IDAAf~~~~~~~~yffkg~-   73 (192)
T d1pexa_          13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFW----------PELP-NRIDAAYEHPSHDLIFIFRGR-   73 (192)
T ss_dssp             EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHC----------TTSC-SSCCEEEEETTTTEEEEEETT-
T ss_pred             EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhhC----------cCCC-CcccceEEEcCCCEEEEEcCC-
Confidence            45667999999977       3456665544333322211110          1112 122222222 26888988764 


Q ss_pred             CCCCCcceEEEEECCCCcE---EEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEee
Q 010571          111 KKSSDSMIVRFIDLETNLC---GVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE  184 (507)
Q Consensus       111 ~~~~~~~~~~~~d~~t~~W---~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~  184 (507)
                             .+|+|+..+...   +.+... ..|......-++..   ++++|+|-|.        ..+.||..+..-..-.
T Consensus        74 -------~~w~y~~~~~~~gyPk~i~~~-~~~~~~~~idaA~~~~~~~~~y~Fkg~--------~y~~y~~~~~~~~~~~  137 (192)
T d1pexa_          74 -------KFWALNGYDILEGYPKKISEL-GLPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHIMDKDY  137 (192)
T ss_dssp             -------EEEEESTTCCCTTCSEESTTT-TCCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTEECSSC
T ss_pred             -------EEEEEcCCcccCCCCeEeeee-ecCCCCCCccEEEEECCCCEEEEEeCC--------EEEEEcCccccccCCC
Confidence                   378887554332   122211 12222222223332   4689998663        4788887654321111


Q ss_pred             cC------CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          185 VT------QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       185 ~~------g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      +.      ..+| ... .++. ..++++|+|-|       +..++||..+.+-..
T Consensus       138 pk~I~~~w~gvp-~~v-dAa~-~~~g~~YfF~g-------~~y~r~~~~~~~v~~  182 (192)
T d1pexa_         138 PRLIEEDFPGIG-DKV-DAVY-EKNGYIYFFNG-------PIQFEYSIWSNRIVR  182 (192)
T ss_dssp             CCBHHHHSTTSC-SCC-SEEE-EETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred             cEEHhhcCCCCC-CCc-eEEE-EeCCEEEEEEC-------CEEEEEeCCcCeEcc
Confidence            00      1122 222 2333 45778999988       678999987766544

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=1.1  Score=36.54  Aligned_cols=158  Identities=8%  Similarity=-0.018  Sum_probs=80.0

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEccc
Q 010571           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGH  109 (507)
Q Consensus        32 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  109 (507)
                      +++.+++.+|+|-|       .-+|.++..............          ....|.+. . ++...  ++++|+|-|.
T Consensus        16 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~----------w~glp~~I-D-AAf~~~~~~~~yfFkG~   76 (195)
T d1su3a2          16 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVF----------WPQLPNGL-E-AAYEFADRDEVRFFKGN   76 (195)
T ss_dssp             EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGT----------CTTSCSSC-C-EEEEEGGGTEEEEEETT
T ss_pred             EEEEcCCeEEEEeC-------CEEEEeeCCCCccCccchHhh----------CcCCCCcc-c-ceEEecCCcEEEEECCc
Confidence            55667999999987       234555544333322111111          01122211 2 22223  5899999774


Q ss_pred             CCCCCCcceEEEEECCCCc---EEEeecCCCCCCCcccceEE-EE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEE-
Q 010571          110 YKKSSDSMIVRFIDLETNL---CGVMETSGKVPVARGGHSVT-LV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDA-  182 (507)
Q Consensus       110 ~~~~~~~~~~~~~d~~t~~---W~~~~~~g~~p~~r~~~~~~-~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~-  182 (507)
                              .+++|+-.+..   -..+...-.+|......-++ ..  ++++|+|-|.        ..+.||..+.+-.. 
T Consensus        77 --------~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~--------~y~ry~~~~~~vd~g  140 (195)
T d1su3a2          77 --------KYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPG  140 (195)
T ss_dssp             --------EEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSS
T ss_pred             --------EEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC--------EEEEEeccCccccCC
Confidence                    38888743211   11111000123222222223 23  4699999774        57889887653211 


Q ss_pred             ----eec-CCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEee
Q 010571          183 ----VEV-TQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP  234 (507)
Q Consensus       183 ----~~~-~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~  234 (507)
                          +.. =..+|. ... ++. ..++++|+|-|       +..++||..+..-..+
T Consensus       141 yPk~I~~~w~Gvp~-~iD-AAf-~~~g~~YfFkg-------~~y~r~~~~~~~v~~~  187 (195)
T d1su3a2         141 YPKMIAHDFPGIGH-KVD-AVF-MKDGFFYFFHG-------TRQYKFDPKTKRILTL  187 (195)
T ss_dssp             CSEEHHHHSTTSCS-CCS-EEE-EETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred             cccccccccCCCCC-Ccc-EEE-EECCeEEEEEC-------CEEEEEeCCcCEEEec
Confidence                110 012232 222 333 34778999988       6789999887766554

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=1.4  Score=35.96  Aligned_cols=152  Identities=12%  Similarity=0.066  Sum_probs=78.6

Q ss_pred             eeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEE----eecC-CCCCCCcccceEEEE--CCEEEEEcCcCCCCCcc
Q 010571           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV----METS-GKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLL  167 (507)
Q Consensus        95 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~----~~~~-g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~  167 (507)
                      +++.+++.+|+|-|.        .+|+|+........    +... ..+|... . ++...  ++++|+|-|.       
T Consensus        11 Av~~~~G~~y~Fkg~--------~ywr~~~~~~~~~~~P~~I~~~w~glp~~I-D-AAf~~~~~~k~yfFkg~-------   73 (195)
T d1itva_          11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRKL-D-SVFEEPLSKKLFFFSGR-------   73 (195)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSSC-S-EEEECTTTCCEEEEETT-------
T ss_pred             eEEEeCCEEEEEECC--------EEEEEeCCCCCcCCCcEEeeeecCCCCCCc-c-EEEEECCCCEEEEEecC-------
Confidence            466789999999763        26677644332211    1100 1233221 1 22222  4688888653       


Q ss_pred             CcEEEEEcCCCcE-EEeecCCCCCCCCC-CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe--eeec-CCCC-
Q 010571          168 NDVHFLDLETMTW-DAVEVTQTPPAPRY-DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ--PEIK-GDLV-  241 (507)
Q Consensus       168 ~~~~~~d~~t~~W-~~~~~~g~~p~~r~-~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~--~~~~-~~~p-  241 (507)
                       .+++|+-....- ..+...| +|.... --++....++++|+|=|       +..|+||..++.-..  +... ..+| 
T Consensus        74 -~~~~y~~~~~~~Pk~i~~~g-~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~v~~gyPk~i~~~w~g  144 (195)
T d1itva_          74 -QVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPG  144 (195)
T ss_dssp             -EEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred             -EEEEEcCccccCCEEhhhcC-CCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCcccccCCCccchhhhcCC
Confidence             467776322111 1112112 222212 22344445678999987       578999988764332  1100 0111 


Q ss_pred             CCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          242 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       242 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      .|-.-.++...++.+|+|-|.       ..|.||..+.
T Consensus       145 vp~~idaAf~~~~~~Yffkg~-------~y~r~~~~~~  175 (195)
T d1itva_         145 VPLDTHDVFQFREKAYFCQDR-------FYWRVSSRSE  175 (195)
T ss_dssp             SCSSCSEEEEETTEEEEEETT-------EEEEEECCTT
T ss_pred             CCCCCcEEEEeCCcEEEEECC-------EEEEEcCCce
Confidence            222344667778999998663       4677776544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=93.23  E-value=2.5  Score=37.17  Aligned_cols=225  Identities=8%  Similarity=0.041  Sum_probs=106.2

Q ss_pred             CeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccC
Q 010571            5 SWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS   82 (507)
Q Consensus         5 ~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~   82 (507)
                      .+.||+.+..+..+.........-.-+++++.  ++.||+..+      .+.+.++|+.......+.....         
T Consensus        48 I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~------~~~i~~~~~~g~~~~~~~~~~~---------  112 (314)
T d1pjxa_          48 ILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM------RLGLLVVQTDGTFEEIAKKDSE---------  112 (314)
T ss_dssp             EEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET------TTEEEEEETTSCEEECCSBCTT---------
T ss_pred             EEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC------CCeEEEEeCCCcEEEEEecccc---------
Confidence            67889988888776531111111122344444  456777654      2458899988765443332211         


Q ss_pred             CccCCCCCccceeeEEECCEEEEEc--ccCC-------CCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-
Q 010571           83 GLLEVLPPMSDHCMVKWGTKLLILG--GHYK-------KSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-  152 (507)
Q Consensus        83 ~~~~~p~~r~~~~~~~~~~~iyv~G--G~~~-------~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-  152 (507)
                         ..+.....-.++.-++.||+.-  +...       .......++.+++.. +...+..  .+..+ .+.+....++ 
T Consensus       113 ---g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~--~~~~p-NGi~~~~d~d~  185 (314)
T d1pjxa_         113 ---GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT--AFQFP-NGIAVRHMNDG  185 (314)
T ss_dssp             ---SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE--EESSE-EEEEEEECTTS
T ss_pred             ---ccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC--Cccee-eeeEECCCCCc
Confidence               0111111112223367888862  2111       111244688888754 4554432  12111 1111111222 


Q ss_pred             ---EEEEEcCcCCCCCccCcEEEEEcCCCc---EEEeecCCCCCCCCC--CceEEEEcCcEEEEEeCCCCCcCCCcEEEE
Q 010571          153 ---RLIIFGGEDRSRKLLNDVHFLDLETMT---WDAVEVTQTPPAPRY--DHSAALHANRYLIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       153 ---~l~~~GG~~~~~~~~~~~~~~d~~t~~---W~~~~~~g~~p~~r~--~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~  224 (507)
                         .||+..-      ..+.++.||+....   +..+-.  ..+....  --.+++-.++.|||....     .+.|++|
T Consensus       186 ~~~~lyv~d~------~~~~i~~~d~~~~g~~~~~~~~~--~~~~~~~~~pdGiavD~~GnlyVa~~~-----~g~I~~~  252 (314)
T d1pjxa_         186 RPYQLIVAET------PTKKLWSYDIKGPAKIENKKVWG--HIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVF  252 (314)
T ss_dssp             CEEEEEEEET------TTTEEEEEEEEETTEEEEEEEEE--ECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEE
T ss_pred             ceeEEEEEee------cccceEEeeccCccccceeeEEE--EccccccccceeeEEecCCcEEEEEcC-----CCEEEEE
Confidence               4666532      24579998864332   222211  1111111  113455556678886422     2579999


Q ss_pred             ECCCCcEEe-eeecCCCCCCCcceEEEEEC---CEEEEEeccCCCCCcceEEEEE
Q 010571          225 DLQTNEWSQ-PEIKGDLVTGRAGHAGITID---ENWYIVGGGDNNNGCQETIVLN  275 (507)
Q Consensus       225 d~~~~~W~~-~~~~~~~p~~r~~~~~~~~~---~~l~v~GG~~~~~~~~d~~~~d  275 (507)
                      |+.+..... +.    .|.  ...+.++++   +.|||....+     +.++.++
T Consensus       253 dp~~g~~~~~i~----~p~--~~~t~~afg~d~~~lyVt~~~~-----g~i~~~~  296 (314)
T d1pjxa_         253 GPDGGQPKMRIR----CPF--EKPSNLHFKPQTKTIFVTEHEN-----NAVWKFE  296 (314)
T ss_dssp             CTTCBSCSEEEE----CSS--SCEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred             eCCCCEEEEEEE----CCC--CCEEEEEEeCCCCEEEEEECCC-----CcEEEEE
Confidence            998765322 21    222  223445553   2577764322     2566666

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.84  E-value=0.29  Score=42.62  Aligned_cols=135  Identities=12%  Similarity=0.124  Sum_probs=66.6

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEE
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG  130 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~  130 (507)
                      ..+.+||+.++....+.....                 .....++.+  ++..++.|+.+.      .+.+||..++...
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d~------~i~~~~~~~~~~~  214 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVH-----------------PAEITSVAFSNNGAFLVATDQSR------KVIPYSVANNFEL  214 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEEC-----------------SSCEEEEEECTTSSEEEEEETTS------CEEEEEGGGTTEE
T ss_pred             ccccccccccccccccccccc-----------------ccccccccccccccccccccccc------ccccccccccccc
Confidence            357788887776655443321                 111222222  445555555422      3889998877544


Q ss_pred             EeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEE-EcCcEEE
Q 010571          131 VMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLI  207 (507)
Q Consensus       131 ~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~~l~  207 (507)
                      ....  ..........++.+  ++.+++.||.+      +.+.+||+.+...........  .......++. .+++ .+
T Consensus       215 ~~~~--~~~~h~~~v~~l~~s~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l  283 (299)
T d1nr0a2         215 AHTN--SWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHPIIIKGA--HAMSSVNSVIWLNET-TI  283 (299)
T ss_dssp             SCCC--CCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCCEEETTS--STTSCEEEEEEEETT-EE
T ss_pred             cccc--cccccccccccccccccccceEEEcCC------CEEEEEECCCCCcceEEEecC--CCCCcEEEEEECCCC-EE
Confidence            3221  11111122222233  45677777754      358899988765443332211  1111222233 3344 66


Q ss_pred             EEeCCCCCcCCCcEEEEEC
Q 010571          208 VFGGCSHSIFFNDLHVLDL  226 (507)
Q Consensus       208 i~GG~~~~~~~~~i~~~d~  226 (507)
                      +.||.+     ..|.++|+
T Consensus       284 ~s~s~D-----~~i~iWdl  297 (299)
T d1nr0a2         284 VSAGQD-----SNIKFWNV  297 (299)
T ss_dssp             EEEETT-----SCEEEEEC
T ss_pred             EEEeCC-----CEEEEEec
Confidence            677754     24666664

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.83  E-value=2.8  Score=36.67  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEc-CcEEEEEeCCCCCcCCCcEEEEECCCCcE
Q 010571          153 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       153 ~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~~l~i~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      .+++.||.+      +.+..||..+.+-...... .......-.+++... .+.+++.||.+     ..+.+||+.++..
T Consensus       173 ~~~~~~~~d------~~v~~~d~~~~~~~~~~~~-~~~~~~~v~~v~~~pd~~~~l~s~~~d-----~~i~iwd~~~~~~  240 (325)
T d1pgua1         173 MRSMTVGDD------GSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSGEF  240 (325)
T ss_dssp             CEEEEEETT------TEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTCCE
T ss_pred             ceEEEeecc------cccccccccccccceeccc-ccCCCCccEEeeeccccceeccccccc-----cceeeeeeccccc
Confidence            455666643      2577888766543332211 111111111222222 34567777755     4588999988775


Q ss_pred             EeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCee
Q 010571          232 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW  281 (507)
Q Consensus       232 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W  281 (507)
                      ...-.....+.....++....++..++.|+.++     .+.++|+.+.+-
T Consensus       241 ~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-----~i~iwd~~~~~~  285 (325)
T d1pgua1         241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKC  285 (325)
T ss_dssp             EEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEE
T ss_pred             cccccccccccccceeeeeccCCCEEEEEeCCC-----eEEEEECCCCCE
Confidence            442111111221122233334567777777543     477889887754

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=2.7  Score=36.36  Aligned_cols=143  Identities=11%  Similarity=0.086  Sum_probs=73.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      .+..++.|+.+     ..+.+||..++.....-..                  ......++..+++.++.|+.+      
T Consensus       212 ~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~------------------h~~~v~~~~~~~~~l~~~~~d------  262 (355)
T d1nexb2         212 ERKRCISASMD-----TTIRIWDLENGELMYTLQG------------------HTALVGLLRLSDKFLVSAAAD------  262 (355)
T ss_dssp             TTTEEEEEETT-----SCEEEEETTTCCEEEEECC------------------CSSCCCEEEECSSEEEEECTT------
T ss_pred             cceeeeccccc-----ceEEeeecccccccccccc------------------ccccccccccccceeeeeecc------
Confidence            44455555533     4578899887754332211                  111223455566677777643      


Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~  196 (507)
                      ..+.+||..+..-.....    ........+...++++++.|+ +      +.+.+||+.+++......    .......
T Consensus       263 g~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~g~-d------~~i~vwd~~tg~~~~~~~----~~~~~~V  327 (355)
T d1nexb2         263 GSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS-E------NQFNIYNLRSGKLVHANI----LKDADQI  327 (355)
T ss_dssp             SEEEEEETTTCCEEEEEE----CTTCCCCCEEEECSSEEEEEE-T------TEEEEEETTTCCBCCSCT----TTTCSEE
T ss_pred             cccccccccccceecccc----cCCceEEEEEcCCCCEEEEEe-C------CEEEEEECCCCCEEEEEe----cCCCCCE
Confidence            248888988765332211    112222233445666655543 2      358999998876432211    1111112


Q ss_pred             eEEEEcCcEEEEEeCCCCCcCCCcEEEEEC
Q 010571          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDL  226 (507)
Q Consensus       197 ~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~  226 (507)
                      ..+.+.++.+++.|+.++.   --+|++|.
T Consensus       328 ~~v~~~~~~~~~~~s~dg~---~~l~~~df  354 (355)
T d1nexb2         328 WSVNFKGKTLVAAVEKDGQ---SFLEILDF  354 (355)
T ss_dssp             EEEEEETTEEEEEEESSSC---EEEEEEEC
T ss_pred             EEEEEcCCeEEEEEECCCc---EEEEEEeC
Confidence            2333445556666665442   23677775

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.45  E-value=3  Score=36.07  Aligned_cols=93  Identities=11%  Similarity=0.082  Sum_probs=52.5

Q ss_pred             cEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceE
Q 010571          169 DVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA  248 (507)
Q Consensus       169 ~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~  248 (507)
                      .+..+|+.+.+......   .. .....++....++..++.|+.+     ..+.+||..++....... +    ......
T Consensus       182 ~i~~~d~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~-~----h~~~v~  247 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILS---GH-TDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMYTLQ-G----HTALVG  247 (355)
T ss_dssp             CEEEEETTTTEEEEEEC---CC-SSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTCCEEEEEC-C----CSSCCC
T ss_pred             eeeeeecccccceeeee---cc-ccccccccccccceeeeccccc-----ceEEeeeccccccccccc-c----cccccc
Confidence            58888988776554432   11 1222233334444466666654     357889988776544211 1    111223


Q ss_pred             EEEECCEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571          249 GITIDENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       249 ~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      ++.++++.++.|+.++     .+.++|+.+..
T Consensus       248 ~~~~~~~~l~~~~~dg-----~i~iwd~~~~~  274 (355)
T d1nexb2         248 LLRLSDKFLVSAAADG-----SIRGWDANDYS  274 (355)
T ss_dssp             EEEECSSEEEEECTTS-----EEEEEETTTCC
T ss_pred             ccccccceeeeeeccc-----ccccccccccc
Confidence            4556777888887543     47788887664

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.42  E-value=0.87  Score=40.28  Aligned_cols=144  Identities=13%  Similarity=0.087  Sum_probs=76.7

Q ss_pred             CceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEe
Q 010571           53 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM  132 (507)
Q Consensus        53 ~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~  132 (507)
                      ..++++|..++...+++..                  .+..+.+..-+++.++++|....    ..++++|..++.-..+
T Consensus        24 g~v~v~d~~~~~~~~~~~~------------------~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKVPEP------------------LRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             TEEEEECTTSSBEEECSCC------------------SCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEEC
T ss_pred             CeEEEEECCCCcEEEccCC------------------CCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEe
Confidence            3678888888776665311                  33333322336776666554322    2489999999887765


Q ss_pred             ecCCCCCCCcccceEEEE-CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeC
Q 010571          133 ETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  211 (507)
Q Consensus       133 ~~~g~~p~~r~~~~~~~~-~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG  211 (507)
                      .   ..+..  -.+++.- +++.+++++.      ...++.++..+.....+...   . ......++...++..+++++
T Consensus        82 ~---~~~~~--v~~~~~spdg~~l~~~~~------~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~spdg~~la~~~  146 (360)
T d1k32a3          82 E---ENLGN--VFAMGVDRNGKFAVVAND------RFEIMTVDLETGKPTVIERS---R-EAMITDFTISDNSRFIAYGF  146 (360)
T ss_dssp             C---CCCCS--EEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEEC---S-SSCCCCEEECTTSCEEEEEE
T ss_pred             e---CCCce--EEeeeecccccccceecc------ccccccccccccceeeeeec---c-cccccchhhccceeeeeeec
Confidence            4   11111  1122222 4455555543      23588899988876555421   1 12222344445555555544


Q ss_pred             CCCC-----cCCCcEEEEECCCCcEEe
Q 010571          212 CSHS-----IFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       212 ~~~~-----~~~~~i~~~d~~~~~W~~  233 (507)
                      ....     .....++++|+.+..-..
T Consensus       147 ~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3         147 PLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             cccccceeeccccceeeeccccCceee
Confidence            3221     222357888888765443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.32  E-value=3.2  Score=36.07  Aligned_cols=202  Identities=11%  Similarity=-0.018  Sum_probs=99.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCCCc
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS  116 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~  116 (507)
                      ++.||.+--     ....+++||+.++.-...+..                  ...+..+..-++.|++...        
T Consensus        29 ~~~l~wvDi-----~~~~I~r~d~~~g~~~~~~~~------------------~~~~~i~~~~dg~l~va~~--------   77 (295)
T d2ghsa1          29 SGTAWWFNI-----LERELHELHLASGRKTVHALP------------------FMGSALAKISDSKQLIASD--------   77 (295)
T ss_dssp             TTEEEEEEG-----GGTEEEEEETTTTEEEEEECS------------------SCEEEEEEEETTEEEEEET--------
T ss_pred             CCEEEEEEC-----CCCEEEEEECCCCeEEEEECC------------------CCcEEEEEecCCCEEEEEe--------
Confidence            567776522     335699999999876544421                  1222333334777777532        


Q ss_pred             ceEEEEECCCCcEEEeecC-CCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          117 MIVRFIDLETNLCGVMETS-GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~-g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      +.+..||+.+++++.+... ...+..|.....+.-++.+|+-.-....  ..+.-..|.+..++.+.+..  ...  . .
T Consensus        78 ~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~--~~~--~-~  150 (295)
T d2ghsa1          78 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFA--DIS--I-P  150 (295)
T ss_dssp             TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEE--EES--S-E
T ss_pred             CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccc--cccceeEeeecCCcEEEEee--ccC--C-c
Confidence            2499999999999887631 1112222222222225566664322211  12334445445566555542  111  1 1


Q ss_pred             ceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCc--EEe-eeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcc
Q 010571          196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQ-PEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       196 ~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~--W~~-~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~  269 (507)
                      ...+...+ +.+|+..-.     .+.|++|++....  ... .......+......-...+  +++||+..-..     .
T Consensus       151 Ng~~~s~d~~~l~~~dt~-----~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-----g  220 (295)
T d2ghsa1         151 NSICFSPDGTTGYFVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-----G  220 (295)
T ss_dssp             EEEEECTTSCEEEEEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-----T
T ss_pred             ceeeecCCCceEEEeecc-----cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-----C
Confidence            12333333 445654332     3668888864321  110 0000011112222333444  56788762111     1


Q ss_pred             eEEEEEcCcCeeEEecc
Q 010571          270 ETIVLNMTKLAWSILTS  286 (507)
Q Consensus       270 d~~~~d~~~~~W~~~~~  286 (507)
                      .+.+||+.......+..
T Consensus       221 ~V~~~dp~G~~~~~i~l  237 (295)
T d2ghsa1         221 AVDRYDTDGNHIARYEV  237 (295)
T ss_dssp             EEEEECTTCCEEEEEEC
T ss_pred             ceEEecCCCcEeeEecC
Confidence            58999998877776643

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=92.31  E-value=2.9  Score=35.66  Aligned_cols=184  Identities=16%  Similarity=0.223  Sum_probs=98.9

Q ss_pred             CCCeEEeccCCCCCCccccceEEEECCEEEEEcCCCCCccCCc--eEEEECCC---Cce--eEeeeccccccCccccCCc
Q 010571           12 YDLWVTLPVSGARPSPRYKHAAAVFDQKLYIVGGSRNGRFLSD--VQVFDLRS---LAW--SNLRLETELDADKTEDSGL   84 (507)
Q Consensus        12 ~~~W~~~~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~--~~~~d~~t---~~W--~~~~~~~~~~~~~~~~~~~   84 (507)
                      ..-|.+-. .+.+|.--.-|+.+++++.-|.+|=-+++.....  ++.|.-.-   +..  +.+|..-.           
T Consensus       265 ~spw~~t~-l~~i~~vte~hsfa~idn~~~avgyhn~dv~pr~lg~lyf~daf~sp~~fvrr~i~~~y~-----------  332 (516)
T d1v0ea1         265 KSPWRKTD-LGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYE-----------  332 (516)
T ss_dssp             TSCCEEEE-CCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGC-----------
T ss_pred             CCCceecc-ccccceeeeeeeEEEEcCCceEEEeccCCcCcceeeEEEcccccCCccceeeeccchhhc-----------
Confidence            56675443 3467878889999999888888875333322222  22222111   112  22222111           


Q ss_pred             cCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCC--
Q 010571           85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR--  162 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~--  162 (507)
                          +...-.|+-.+++-||+.--..-....-+++.+-.-...+|..+...  --.-......+.+++.||+||-.-.  
T Consensus       333 ----~nasepcvk~y~gvlyl~trgt~~t~~gssl~~s~d~gq~w~~lrfp--~nvhhsnlpfakvgd~l~ifgsera~~  406 (516)
T d1v0ea1         333 ----PDASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFP--HNVHHTTLPFAKVGDDLIMFGSERAEN  406 (516)
T ss_dssp             ----TTEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECT--TCCCSSCCCEEEETTEEEEEEECSSTT
T ss_pred             ----CCCCCchhhhcCCEEEEEeccccCCCCCccceeccccccChhhccCC--ccccccCCChhhcCCeEEEeccccccc
Confidence                12334456667999998753332233344566655566789999631  1122334456789999999986421  


Q ss_pred             -------CCCc---cCcEEE--EE-----cCCCcEEEeec---CCCCCCCCCCceEEEEcCcEE-EEEeCCC
Q 010571          163 -------SRKL---LNDVHF--LD-----LETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCS  213 (507)
Q Consensus       163 -------~~~~---~~~~~~--~d-----~~t~~W~~~~~---~g~~p~~r~~~~~~~~~~~~l-~i~GG~~  213 (507)
                             +.++   .....+  .+     ++.-+|..+.-   .|.+...-.+...+++.++.| |||||-+
T Consensus       407 ewe~gapd~ry~~syprtf~~rvnvn~ws~ddvew~nitdqiyqg~ivns~vgvgsv~vkd~~lyyifgged  478 (516)
T d1v0ea1         407 EWEAGAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGED  478 (516)
T ss_dssp             CSSTTCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECCBCCSSSCCCSEEEEEEEETTEEEEEEEECC
T ss_pred             ccccCCCccccccCCCceEEEEEccccccccceEEEeeehhhhcCceeeccccceeEEEeCCEEEEEecCcc
Confidence                   1111   111222  23     34456766642   233344444445566677765 6999964

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.28  E-value=3.6  Score=36.53  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecC-CCCCCC-cccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEc
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS-GKVPVA-RGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDL  175 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~-g~~p~~-r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~  175 (507)
                      ++.+++.|+.+.      .+.+||..+......... ...... .....++.+  ++..++.|+.+      +.+.+||+
T Consensus       216 ~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------~~i~iwd~  283 (388)
T d1erja_         216 DGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD------RSVKLWNL  283 (388)
T ss_dssp             TCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT------SEEEEEEC
T ss_pred             CCCeEEEEcCCC------eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC------CcEEEEec
Confidence            456677776432      388899888765443211 011111 111122223  34556666643      35777887


Q ss_pred             CCCcEEEeecCCC--------CCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          176 ETMTWDAVEVTQT--------PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       176 ~t~~W~~~~~~g~--------~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      .+..-........        ......-.+++...++.+++.|+.+     +.|.+||+.+..-.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~vwd~~~~~~~  343 (388)
T d1erja_         284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFWDKKSGNPL  343 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEEETTTCCEE
T ss_pred             cCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEE
Confidence            6543222110000        0001111222333455566677654     46889998876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.19  E-value=3.5  Score=36.22  Aligned_cols=253  Identities=13%  Similarity=0.063  Sum_probs=121.0

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~  115 (507)
                      ++.||+..-     ....++++|+.++.........                 ...-+.++.. +++||+..-...  ..
T Consensus        50 ~G~Ly~~D~-----~~g~I~ri~p~g~~~~~~~~~~-----------------~~~p~gla~~~dG~l~va~~~~~--~~  105 (319)
T d2dg1a1          50 QGQLFLLDV-----FEGNIFKINPETKEIKRPFVSH-----------------KANPAAIKIHKDGRLFVCYLGDF--KS  105 (319)
T ss_dssp             TSCEEEEET-----TTCEEEEECTTTCCEEEEEECS-----------------SSSEEEEEECTTSCEEEEECTTS--SS
T ss_pred             CCCEEEEEC-----CCCEEEEEECCCCeEEEEEeCC-----------------CCCeeEEEECCCCCEEEEecCCC--cc
Confidence            456887732     2346899999887654433221                 1112333332 678888642211  11


Q ss_pred             cceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD  195 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~  195 (507)
                      ...+..++..+......... ..+..+..-.++.-++.+|+-.-..........++++++.......+..  ....|   
T Consensus       106 ~~~i~~~~~~~~~~~~~~~~-~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--~~~~p---  179 (319)
T d2dg1a1         106 TGGIFAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVA---  179 (319)
T ss_dssp             CCEEEEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSE---
T ss_pred             ceeEEEEcCCCceeeeeccC-CCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee--cccee---
Confidence            34588888888776655421 1111222222222356777643222122234568999988777766542  11111   


Q ss_pred             ceEEEEcC-cEEEEEeCCCCCcCCCcEEEEECCCCc---EEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcc
Q 010571          196 HSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQ  269 (507)
Q Consensus       196 ~~~~~~~~-~~l~i~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~  269 (507)
                      ..++.-.+ +.||+.--     ..+.|++|++....   .....................+  +++|||..-..     .
T Consensus       180 nGia~s~dg~~lyvad~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~-----g  249 (319)
T d2dg1a1         180 NGIALSTDEKVLWVTET-----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----G  249 (319)
T ss_dssp             EEEEECTTSSEEEEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----T
T ss_pred             eeeeeccccceEEEecc-----cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC-----C
Confidence            23333333 46787643     23679999875431   1110000000111112233344  56788874321     2


Q ss_pred             eEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcc-cCCCcCCeEEEEECC
Q 010571          270 ETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGG-YNGKYNNEVFVMRLK  331 (507)
Q Consensus       270 d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG-~~~~~~~~v~~~~~~  331 (507)
                      .+.+||++...-..|. +|...+... ....+.+..++...+|+.-. ........+|..+..
T Consensus       250 ~V~~~~p~G~~l~~i~-~P~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         250 RVLVFNKRGYPIGQIL-IPGRDEGHM-LRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             EEEEECTTSCEEEEEE-CTTGGGTCS-CBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             EEEEECCCCcEEEEEe-CCCcCCCcC-ceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence            5889998765555553 333211111 11223333444455665432 112223456666653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.82  E-value=3.5  Score=35.48  Aligned_cols=137  Identities=14%  Similarity=0.126  Sum_probs=68.1

Q ss_pred             CEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcE
Q 010571          152 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       152 ~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      +.+++.|+.+      ..+..||+.+.+-...-. +.   ...-.+++...++.+++.|+.+     ..+.++|+.....
T Consensus       196 ~~~~~~~~~d------~~v~i~d~~~~~~~~~~~-~h---~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~  260 (340)
T d1tbga_         196 TRLFVSGACD------ASAKLWDVREGMCRQTFT-GH---ESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQE  260 (340)
T ss_dssp             SSEEEEEETT------TEEEEEETTTTEEEEEEC-CC---SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred             cceeEEeecC------ceEEEEECCCCcEEEEEe-CC---CCCeEEEEECCCCCEEEEEeCC-----CeEEEEeeccccc
Confidence            3555555543      358888987765433211 10   1111223334455577777654     3578888877665


Q ss_pred             EeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010571          232 SQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH  309 (507)
Q Consensus       232 ~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~  309 (507)
                      .....   ..........+.+  ++.+++.|+.++     .+.+||+.+..-  +..+.+.      ......+.+..+.
T Consensus       261 ~~~~~---~~~~~~~i~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~~--~~~~~~H------~~~V~~l~~s~d~  324 (340)
T d1tbga_         261 LMTYS---HDNIICGITSVSFSKSGRLLLAGYDDF-----NCNVWDALKADR--AGVLAGH------DNRVSCLGVTDDG  324 (340)
T ss_dssp             EEEEC---CTTCCSCEEEEEECSSSCEEEEEETTS-----CEEEEETTTCCE--EEEECCC------SSCEEEEEECTTS
T ss_pred             ccccc---cccccCceEEEEECCCCCEEEEEECCC-----EEEEEECCCCcE--EEEEcCC------CCCEEEEEEeCCC
Confidence            44211   1122222233334  456777776543     478899876543  3233211      1123333444443


Q ss_pred             EEEEEcccCC
Q 010571          310 HLVAFGGYNG  319 (507)
Q Consensus       310 ~l~v~GG~~~  319 (507)
                      .+++.||.++
T Consensus       325 ~~l~s~s~Dg  334 (340)
T d1tbga_         325 MAVATGSWDS  334 (340)
T ss_dssp             SCEEEEETTS
T ss_pred             CEEEEEccCC
Confidence            4556677654

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=3  Score=33.80  Aligned_cols=153  Identities=8%  Similarity=-0.010  Sum_probs=82.5

Q ss_pred             eeEEECCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCC---CCCCCcccceEEEE--CCEEEEEcCcCCCCCccCc
Q 010571           95 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSG---KVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLND  169 (507)
Q Consensus        95 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g---~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~  169 (507)
                      +++.+++.+|+|-|..        +|.++.............   .+|...  -++...  ++++|+|-|.        .
T Consensus        16 Av~~~~G~~y~Fkg~~--------~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG~--------~   77 (195)
T d1su3a2          16 AITTIRGEVMFFKDRF--------YMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKGN--------K   77 (195)
T ss_dssp             EEEEETTEEEEEETTE--------EEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEETT--------E
T ss_pred             EEEEcCCeEEEEeCCE--------EEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECCc--------E
Confidence            5667899999997742        566655554443332221   233322  233333  5789988774        5


Q ss_pred             EEEEEcCCCc---EEEeec-CCCCCCCCCCc-eEEEE-cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe-----eeec-
Q 010571          170 VHFLDLETMT---WDAVEV-TQTPPAPRYDH-SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-----PEIK-  237 (507)
Q Consensus       170 ~~~~d~~t~~---W~~~~~-~g~~p~~r~~~-~~~~~-~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~-----~~~~-  237 (507)
                      .++|+-.+..   -..+.. -| +|.....- ++... .++++|+|-|       +..|+||..+..-..     +... 
T Consensus        78 y~~y~~~~~~~g~p~~i~~~~G-~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~w  149 (195)
T d1su3a2          78 YWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDF  149 (195)
T ss_dssp             EEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHS
T ss_pred             EEEEcCCccccCCCccchhhcC-CCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCccccccccc
Confidence            7777643211   111110 01 12221112 22233 4578999988       678999988764321     1100 


Q ss_pred             CCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeE
Q 010571          238 GDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS  282 (507)
Q Consensus       238 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~  282 (507)
                      +.+|  ..-.++...++++|+|-|.       ..|.||..+.+-.
T Consensus       150 ~Gvp--~~iDAAf~~~g~~YfFkg~-------~y~r~~~~~~~v~  185 (195)
T d1su3a2         150 PGIG--HKVDAVFMKDGFFYFFHGT-------RQYKFDPKTKRIL  185 (195)
T ss_dssp             TTSC--SCCSEEEEETTEEEEEETT-------EEEEEETTTTEEE
T ss_pred             CCCC--CCccEEEEECCeEEEEECC-------EEEEEeCCcCEEE
Confidence            1122  2223555668899999663       5788888776543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.11  E-value=6.9  Score=37.52  Aligned_cols=133  Identities=16%  Similarity=0.136  Sum_probs=77.7

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG  108 (507)
                      .+-+++++.||+-..      .+.++.+|..|+.  |+.-+.....        ..............+..++++|+...
T Consensus        71 stPiv~~g~vyv~t~------~~~v~AlDa~TG~~~W~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~v~~~t~  136 (573)
T d1kb0a2          71 ATPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRS--------TGFKGCCDVVNRGVALWKGKVYVGAW  136 (573)
T ss_dssp             CCCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGG--------GGGGSSSCSCCCCCEEETTEEEEECT
T ss_pred             ECCEEECCEEEEECC------CCeEEEEeCCCCCeEEEeCCCCCcc--------cccccccccccccceEECCcEEEEec
Confidence            344678999998754      3569999999984  8754332210        00011122334456777898887632


Q ss_pred             cCCCCCCcceEEEEECCCCc--EEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCc--EEEee
Q 010571          109 HYKKSSDSMIVRFIDLETNL--CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE  184 (507)
Q Consensus       109 ~~~~~~~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~--W~~~~  184 (507)
                             ...++.+|..|++  |+.....+.........+.+++++.+|+ |+..........|..||..|++  |+.-.
T Consensus       137 -------~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         137 -------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             -------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             -------ccceeeeccccccceecccCccCCcceEEeecceEEEeccEEE-eeccccccccceEEEEecCCccceeeeee
Confidence                   2248889998885  7654321111111222334566777765 4443333335679999999976  87654


Q ss_pred             c
Q 010571          185 V  185 (507)
Q Consensus       185 ~  185 (507)
                      .
T Consensus       209 ~  209 (573)
T d1kb0a2         209 V  209 (573)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.73  E-value=4.1  Score=34.22  Aligned_cols=240  Identities=8%  Similarity=0.015  Sum_probs=114.7

Q ss_pred             CCCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccc
Q 010571            3 SGSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE   80 (507)
Q Consensus         3 ~~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~   80 (507)
                      .+.|.+|+....-.+|...   +. .. ...+..  |..|.+............+++++..++....+......      
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~---~~-~~-~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~------   89 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSN---LG-VI-NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK------   89 (281)
T ss_dssp             TEEEEEETTTCCEEEEECS---SS-EE-EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE------
T ss_pred             CcEEEEECCCCCEEEEecC---CC-cc-cCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC------
Confidence            4689999998888888631   11 11 111122  55666554333333345799999999988877543310      


Q ss_pred             cCCccCCCCCccceeeEEE--CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECC-EEEEE
Q 010571           81 DSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIF  157 (507)
Q Consensus        81 ~~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~l~~~  157 (507)
                            ....+........  +++.+++.-..........+...+..........      ..... ....-.+ .++.+
T Consensus        90 ------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~  156 (281)
T d1k32a2          90 ------STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN------LGPAT-HILFADGRRVIGR  156 (281)
T ss_dssp             ------EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC------SCSCS-EEEEETTEEEEEE
T ss_pred             ------ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec------CCccc-eeeecCCCeEEEe
Confidence                  0112223333333  4444444333222222445666776666544432      11111 2233333 44444


Q ss_pred             cCcCCCCC-----ccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          158 GGEDRSRK-----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       158 GG~~~~~~-----~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      ........     ..............-....   ..  .......... .+.++......+   ..+|+.+|+.+..-+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~d~~g~~~~  227 (281)
T d1k32a2         157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV---DM--STHVSSPVIV-GHRIYFITDIDG---FGQIYSTDLDGKDLR  227 (281)
T ss_dssp             SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE---CC--SSCCEEEEEE-TTEEEEEECTTS---SCEEEEEETTSCSCE
T ss_pred             eccccceeeeeccCCcceeeeeccccceeecc---CC--ccccceeeee-ccccceeccccc---ccceEEEeCCCCceE
Confidence            43322110     0112222222222222222   11  1112222333 343444433222   357999999988877


Q ss_pred             eeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCeeEEecc
Q 010571          233 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS  286 (507)
Q Consensus       233 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~W~~~~~  286 (507)
                      .+.....     ........+++-+++.-      -.++|++|+.++.-++|+.
T Consensus       228 ~lt~~~~-----~~~~~~SpDG~~I~f~~------~~~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         228 KHTSFTD-----YYPRHLNTDGRRILFSK------GGSIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             ECCCCCS-----SCEEEEEESSSCEEEEE------TTEEEEECTTTCCEEECCC
T ss_pred             EeecCCC-----cccccCcCCCCEEEEEe------CCEEEEEECCCCCEEEecc
Confidence            7642111     11123445554333311      1269999999999988864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=4.6  Score=33.52  Aligned_cols=191  Identities=13%  Similarity=0.157  Sum_probs=92.4

Q ss_pred             EECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcccCCCCC
Q 010571           35 VFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS  114 (507)
Q Consensus        35 ~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  114 (507)
                      ..++.+++.|+.+     ..+.++|+.+++-...-..                  ......++..++++++.||.+.   
T Consensus        22 ~~d~~~l~sgs~D-----g~i~vWd~~~~~~~~~l~~------------------H~~~V~~v~~~~~~l~s~s~D~---   75 (293)
T d1p22a2          22 QYDDQKIVSGLRD-----NTIKIWDKNTLECKRILTG------------------HTGSVLCLQYDERVIITGSSDS---   75 (293)
T ss_dssp             ECCSSEEEEEESS-----SCEEEEESSSCCEEEEECC------------------CSSCEEEEECCSSEEEEEETTS---
T ss_pred             EEcCCEEEEEeCC-----CeEEEEECCCCcEEEEEec------------------CCCCEeeeecccceeecccccc---
Confidence            3466777777744     4578899987764332211                  1112234455777777777533   


Q ss_pred             CcceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCC
Q 010571          115 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY  194 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~  194 (507)
                         .+..++..++........    ............+.+...++       ...+..+|..+..-.....  .......
T Consensus        76 ---~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~  139 (293)
T d1p22a2          76 ---TVRVWDVNTGEMLNTLIH----HCEAVLHLRFNNGMMVTCSK-------DRSIAVWDMASPTDITLRR--VLVGHRA  139 (293)
T ss_dssp             ---CEEEEESSSCCEEEEECC----CCSCEEEEECCTTEEEEEET-------TSCEEEEECSSSSCCEEEE--EECCCSS
T ss_pred             ---cccccccccccccccccc----cccccccccccccceeeccc-------ccceeEeeccccccccccc--ccccccc
Confidence               378888888876665421    11111112222333333332       2245666665433111110  0111111


Q ss_pred             CceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEE
Q 010571          195 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVL  274 (507)
Q Consensus       195 ~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~  274 (507)
                      ...........++ .++.+     ..+..+|+.+..-...-. +    .......+..++..++.|+.++     .+.+|
T Consensus       140 ~v~~~~~~~~~~~-~~s~d-----~~i~~~d~~~~~~~~~~~-~----~~~~v~~~~~~~~~l~~~~~dg-----~i~i~  203 (293)
T d1p22a2         140 AVNVVDFDDKYIV-SASGD-----RTIKVWNTSTCEFVRTLN-G----HKRGIACLQYRDRLVVSGSSDN-----TIRLW  203 (293)
T ss_dssp             CEEEEEEETTEEE-EEETT-----SEEEEEETTTCCEEEEEE-C----CSSCEEEEEEETTEEEEEETTS-----CEEEE
T ss_pred             ccccceecccccc-cccCC-----CceeeecCCCCcEEEEEc-c----cccccccccCCCCeEEEecCCC-----EEEEE
Confidence            1222333344344 33332     458888888766433211 1    1111223344555666666443     36788


Q ss_pred             EcCcCeeEE
Q 010571          275 NMTKLAWSI  283 (507)
Q Consensus       275 d~~~~~W~~  283 (507)
                      |+.+..-..
T Consensus       204 d~~~~~~~~  212 (293)
T d1p22a2         204 DIECGACLR  212 (293)
T ss_dssp             ETTTCCEEE
T ss_pred             ecccceeee
Confidence            887765443

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=4.2  Score=32.91  Aligned_cols=155  Identities=12%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             eEEEECCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEE-ECCEEEEEcccC
Q 010571           32 AAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHY  110 (507)
Q Consensus        32 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  110 (507)
                      +++.+++.+|+|-|       ..+|+|+........-|....        ..+...| .....+... .++++|+|-|. 
T Consensus        11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~--------~~w~glp-~~IDAAf~~~~~~k~yfFkg~-   73 (195)
T d1itva_          11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIA--------DKWPALP-RKLDSVFEEPLSKKLFFFSGR-   73 (195)
T ss_dssp             EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHH--------HHCTTSC-SSCSEEEECTTTCCEEEEETT-
T ss_pred             eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEee--------eecCCCC-CCccEEEEECCCCEEEEEecC-
Confidence            35567999999987       446677654333322221110        0011112 222222222 25789998653 


Q ss_pred             CCCCCcceEEEEECCCCcE-EEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecC-
Q 010571          111 KKSSDSMIVRFIDLETNLC-GVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT-  186 (507)
Q Consensus       111 ~~~~~~~~~~~~d~~t~~W-~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~-  186 (507)
                             .+|+|+-.+-.. +.+...| +|.......++..  ++++|+|=|.        ..+.||..+.+-..-.++ 
T Consensus        74 -------~~~~y~~~~~~~Pk~i~~~g-~p~~~~~idaa~~~~~g~~Y~FkG~--------~y~ryd~~~~~v~~gyPk~  137 (195)
T d1itva_          74 -------QVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASE  137 (195)
T ss_dssp             -------EEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEE
T ss_pred             -------EEEEEcCccccCCEEhhhcC-CCCCchheeeEEEcCCCeEEEEecc--------EEEEEeCCcccccCCCccc
Confidence                   378887433211 1222112 2322222223333  5699999653        588998876532211110 


Q ss_pred             -----CCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCC
Q 010571          187 -----QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN  229 (507)
Q Consensus       187 -----g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~  229 (507)
                           ..+|..  -.++... ++.+|+|-|       +..|+||..+.
T Consensus       138 i~~~w~gvp~~--idaAf~~-~~~~Yffkg-------~~y~r~~~~~~  175 (195)
T d1itva_         138 VDRMFPGVPLD--THDVFQF-REKAYFCQD-------RFYWRVSSRSE  175 (195)
T ss_dssp             HHHHSTTSCSS--CSEEEEE-TTEEEEEET-------TEEEEEECCTT
T ss_pred             hhhhcCCCCCC--CcEEEEe-CCcEEEEEC-------CEEEEEcCCce
Confidence                 112322  3345555 455888887       56788886554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.92  E-value=6.1  Score=33.61  Aligned_cols=238  Identities=9%  Similarity=0.098  Sum_probs=115.6

Q ss_pred             ceEEEE-CCEEEEEcCCCCCccCCceEEEECCCCceeE-eeeccccccCccccCCccCCCCCccceeeEEEC--CEEEE-
Q 010571           31 HAAAVF-DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSN-LRLETELDADKTEDSGLLEVLPPMSDHCMVKWG--TKLLI-  105 (507)
Q Consensus        31 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~-~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~--~~iyv-  105 (507)
                      +.+++. ++.|||.-.     ..+.|.+||+. +.+.. .+....            .......-+..+...  +.+++ 
T Consensus        26 ~gvavd~dg~i~VaD~-----~n~rI~v~d~~-G~~~~~~~~~~~------------~~~~~~~p~~~~~~~~~~~~~~~   87 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADT-----NNHRIQIFDKE-GRFKFQFGECGK------------RDSQLLYPNRVAVVRNSGDIIVT   87 (279)
T ss_dssp             EEEEECTTCCEEEEEG-----GGTEEEEECTT-SCEEEEECCBSS------------STTCBSSEEEEEEETTTTEEEEE
T ss_pred             cEEEEcCCCCEEEEEC-----CCCEEEEEeCC-CCEEEEecccCC------------Cccccccccccccccccccccee
Confidence            344443 577998843     23668999976 44433 222211            001111222333332  33333 


Q ss_pred             EcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEe
Q 010571          106 LGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAV  183 (507)
Q Consensus       106 ~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~  183 (507)
                      ..+.      ...+..++.....+.....    +.. .......+  ++.+|+....      ...+.+|++....-...
T Consensus        88 ~~~~------~~~i~~~~~~g~~~~~~~~----~~~-~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~  150 (279)
T d1q7fa_          88 ERSP------THQIQIYNQYGQFVRKFGA----TIL-QHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKF  150 (279)
T ss_dssp             ECGG------GCEEEEECTTSCEEEEECT----TTC-SCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEE
T ss_pred             ccCC------ccccccccccccceeecCC----Ccc-cccceeccccCCcEEEEeec------cceeeEeccCCceeecc
Confidence            2221      2357788877666665531    111 12223333  3577776542      34588888765443333


Q ss_pred             ecCCCCCCCCCCceEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEec
Q 010571          184 EVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGG  261 (507)
Q Consensus       184 ~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG  261 (507)
                      ..   .......+.++.-.++.+|+.....     +.+++||+.......+...+....|    ..+.+  +++|||...
T Consensus       151 g~---~~~~~~~~~i~~d~~g~i~v~d~~~-----~~V~~~d~~G~~~~~~g~~g~~~~P----~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         151 GC---SKHLEFPNGVVVNDKQEIFISDNRA-----HCVKVFNYEGQYLRQIGGEGITNYP----IGVGINSNGEILIADN  218 (279)
T ss_dssp             EC---TTTCSSEEEEEECSSSEEEEEEGGG-----TEEEEEETTCCEEEEESCTTTSCSE----EEEEECTTCCEEEEEC
T ss_pred             cc---cccccccceeeeccceeEEeeeccc-----cceeeeecCCceeeeecccccccCC----cccccccCCeEEEEEC
Confidence            21   1222223344444566788876543     5789999877666555322222222    23334  567888754


Q ss_pred             cCCCCCcceEEEEEcCcCeeE-EeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCC
Q 010571          262 GDNNNGCQETIVLNMTKLAWS-ILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP  332 (507)
Q Consensus       262 ~~~~~~~~d~~~~d~~~~~W~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~  332 (507)
                      .++.    .+.+|+++- ++. .+.. +..     .. ....+.+..+..|||..+     .+.|.+|+...
T Consensus       219 ~~~~----~v~~f~~~G-~~~~~~~~-~~~-----~~-~p~~vav~~dG~l~V~~~-----n~~v~~fr~~~  273 (279)
T d1q7fa_         219 HNNF----NLTIFTQDG-QLISALES-KVK-----HA-QCFDVALMDDGSVVLASK-----DYRLYIYRYVQ  273 (279)
T ss_dssp             SSSC----EEEEECTTS-CEEEEEEE-SSC-----CS-CEEEEEEETTTEEEEEET-----TTEEEEEECSC
T ss_pred             CCCc----EEEEECCCC-CEEEEEeC-CCC-----CC-CEeEEEEeCCCcEEEEeC-----CCeEEEEEeee
Confidence            3221    367787653 332 1211 110     01 122233444456777543     35577776543

>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Sialidases
family: Endo-alpha-sialidase
domain: Endo-alpha-sialidase
species: Bacteriophage K1F [TaxId: 344021]

Probab=88.80  E-value=6.3  Score=33.58  Aligned_cols=119  Identities=13%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             cCCCCCccceeeEEECCEEEEEcccCCCCCCcceEEEEECCC-----CcEEEeecCCCCCCC----cccceEEEECCEEE
Q 010571           85 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET-----NLCGVMETSGKVPVA----RGGHSVTLVGSRLI  155 (507)
Q Consensus        85 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t-----~~W~~~~~~g~~p~~----r~~~~~~~~~~~l~  155 (507)
                      ...|.-.--|+.+.+++.-|.+|-+..+-. ...+-+|-+..     +.+-..    ..|.+    .+..+.-.+++-||
T Consensus       274 ~~i~~vte~hsfa~idn~~~avgyhn~dv~-pr~lg~lyf~daf~sp~~fvrr----~i~~~y~~nasepcvk~y~gvly  348 (516)
T d1v0ea1         274 GLIPSVTEVHSFATIDNNGFAMGYHQGDVA-PREVGLFYFPDAFNSPSNYVRR----QIPSEYEPDASEPCIKYYDGVLY  348 (516)
T ss_dssp             CSCTTCSEEEEEEECSSSCEEEEEEECSSS-SCEEEEEEETTTTTCTTCCEEE----ECCGGGCTTEEEEEEEEETTEEE
T ss_pred             cccceeeeeeeEEEEcCCceEEEeccCCcC-cceeeEEEcccccCCccceeee----ccchhhcCCCCCchhhhcCCEEE
Confidence            344556678999999999888887665544 22333322211     111111    12221    22234445688888


Q ss_pred             EEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcEEEEEeC
Q 010571          156 IFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG  211 (507)
Q Consensus       156 ~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG  211 (507)
                      +.--..-....-.++++-.-....|..+.....  .-......+.+++. |+|||.
T Consensus       349 l~trgt~~t~~gssl~~s~d~gq~w~~lrfp~n--vhhsnlpfakvgd~-l~ifgs  401 (516)
T d1v0ea1         349 LITRGTRGDRLGSSLHRSRDIGQTWESLRFPHN--VHHTTLPFAKVGDD-LIMFGS  401 (516)
T ss_dssp             EEEEESCTTSCCCEEEEESSTTSSCEEEECTTC--CCSSCCCEEEETTE-EEEEEE
T ss_pred             EEeccccCCCCCccceeccccccChhhccCCcc--ccccCCChhhcCCe-EEEecc
Confidence            874333333334566666555678999974211  11222335667555 999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.04  E-value=8.7  Score=33.21  Aligned_cols=112  Identities=12%  Similarity=-0.000  Sum_probs=57.7

Q ss_pred             CEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCCCCCCcccceEEEE---CCEEEEEcCcCCCCCccCcEEEEEcCC
Q 010571          101 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLET  177 (507)
Q Consensus       101 ~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~l~~~GG~~~~~~~~~~~~~~d~~t  177 (507)
                      +.+++.||.+      ..+..||..+..-.....  ........-.++.+   .+.+++.||.+      ..+.+||+.+
T Consensus       172 ~~~~~~~~~d------~~v~~~d~~~~~~~~~~~--~~~~~~~~v~~v~~~pd~~~~l~s~~~d------~~i~iwd~~~  237 (325)
T d1pgua1         172 PMRSMTVGDD------GSVVFYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKS  237 (325)
T ss_dssp             SCEEEEEETT------TEEEEEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTT
T ss_pred             cceEEEeecc------cccccccccccccceecc--cccCCCCccEEeeeccccceeccccccc------cceeeeeecc
Confidence            4456666643      247778877654333221  11111111223333   24677777654      3588999988


Q ss_pred             CcEEEeecCCCCCCCCCCceE-EEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEEe
Q 010571          178 MTWDAVEVTQTPPAPRYDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ  233 (507)
Q Consensus       178 ~~W~~~~~~g~~p~~r~~~~~-~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~  233 (507)
                      ++....-. +. ..+...... ....++.+++.|+.+     ..+.+||+.+++-..
T Consensus       238 ~~~~~~l~-~~-~~~v~~~~~s~~~~dg~~l~s~s~D-----~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         238 GEFLKYIE-DD-QEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             CCEEEECC-BT-TBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEEE
T ss_pred             cccccccc-cc-ccccccceeeeeccCCCEEEEEeCC-----CeEEEEECCCCCEEE
Confidence            77543321 11 112222121 223455567777755     458889998876443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.47  E-value=8.7  Score=32.67  Aligned_cols=107  Identities=14%  Similarity=0.112  Sum_probs=55.4

Q ss_pred             cCcEEEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcC
Q 010571          202 ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKL  279 (507)
Q Consensus       202 ~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~  279 (507)
                      ....+++.|+.+     ..+.+||+.+..-...-     ......-.++.+  ++.+++.|+.++     .+.++|+...
T Consensus       194 ~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~-----~~h~~~i~~v~~~p~~~~l~s~s~d~-----~i~~~~~~~~  258 (340)
T d1tbga_         194 PDTRLFVSGACD-----ASAKLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDA-----TCRLFDLRAD  258 (340)
T ss_dssp             TTSSEEEEEETT-----TEEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTT
T ss_pred             cccceeEEeecC-----ceEEEEECCCCcEEEEE-----eCCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeeccc
Confidence            344466666544     35788888776543311     111111222333  456777776543     3678888776


Q ss_pred             eeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCC
Q 010571          280 AWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR  333 (507)
Q Consensus       280 ~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~  333 (507)
                      .........      ........+.+..+..+++.|+.+    ..+.+||+.+.
T Consensus       259 ~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~g~~d----g~i~iwd~~~~  302 (340)
T d1tbga_         259 QELMTYSHD------NIICGITSVSFSKSGRLLLAGYDD----FNCNVWDALKA  302 (340)
T ss_dssp             EEEEEECCT------TCCSCEEEEEECSSSCEEEEEETT----SCEEEEETTTC
T ss_pred             ccccccccc------cccCceEEEEECCCCCEEEEEECC----CEEEEEECCCC
Confidence            544322211      112223344444444566777755    45788887543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.11  E-value=9.1  Score=32.55  Aligned_cols=96  Identities=22%  Similarity=0.133  Sum_probs=55.9

Q ss_pred             ceEEEEECCCCcEEEeecCCCCCCCcccceEEEECCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCc
Q 010571          117 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH  196 (507)
Q Consensus       117 ~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~  196 (507)
                      ..+..+|..++.+....   ..|.......+....+..+++++       .+.+.++|+.+.+.......     +....
T Consensus       219 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~v~d~~~~~~~~~~~~-----~~~~~  283 (337)
T d1pbyb_         219 TGLLTMDLETGEMAMRE---VRIMDVFYFSTAVNPAKTRAFGA-------YNVLESFDLEKNASIKRVPL-----PHSYY  283 (337)
T ss_dssp             EEEEEEETTTCCEEEEE---EEECSSCEEEEEECTTSSEEEEE-------ESEEEEEETTTTEEEEEEEC-----SSCCC
T ss_pred             ccEEEEEcCCCcEEEEE---ecCCCcceEEEEecccceEEEEc-------cccEEEEECCCCcEEEEEcC-----CCCEE
Confidence            45888898888876654   23333333333333333333332       24689999998876655432     22234


Q ss_pred             eEEEEcCcEEEEEeCCCCCcCCCcEEEEECCCCcEE
Q 010571          197 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWS  232 (507)
Q Consensus       197 ~~~~~~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W~  232 (507)
                      +++...++..+++|+.+     +.|.+||..+.+-.
T Consensus       284 ~~~~s~dG~~l~v~~~~-----~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         284 SVNVSTDGSTVWLGGAL-----GDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEECTTSCEEEEESBS-----SEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEEeCC-----CcEEEEECCCCcEE
Confidence            55555555444456543     56999999886533

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=86.04  E-value=12  Score=33.99  Aligned_cols=183  Identities=14%  Similarity=0.053  Sum_probs=92.6

Q ss_pred             CCeEeeCCCCCeEEeccCCCCCCccccceEEEE--CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCcccc
Q 010571            4 GSWHLELPYDLWVTLPVSGARPSPRYKHAAAVF--DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTED   81 (507)
Q Consensus         4 ~~~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~   81 (507)
                      -+.++|+.+.+=...-..|     ..-|++++.  |..+|+. +.+     ..+.++|+.++.-.......         
T Consensus        43 ~v~v~D~~t~~v~~~~~~g-----~~~~~v~fSpDG~~l~~~-s~d-----g~v~~~d~~t~~~~~~~~i~---------  102 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTG-----YAVHISRLSASGRYLFVI-GRD-----GKVNMIDLWMKEPTTVAEIK---------  102 (432)
T ss_dssp             EEEEEETTTCCEEEEEECS-----SCEEEEEECTTSCEEEEE-ETT-----SEEEEEETTSSSCCEEEEEE---------
T ss_pred             EEEEEECCCCcEEEEEeCC-----CCeeEEEECCCCCEEEEE-cCC-----CCEEEEEeeCCCceEEEEEe---------
Confidence            4567888777766443222     233444444  5566654 322     45889999887654433221         


Q ss_pred             CCccCCCCCccceeeEEE-------CCEEEEEcccCCCCCCcceEEEEECCCCcEEEeecCCC--------CCCCcccce
Q 010571           82 SGLLEVLPPMSDHCMVKW-------GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK--------VPVARGGHS  146 (507)
Q Consensus        82 ~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~--------~p~~r~~~~  146 (507)
                              ...+|.-.+.       +..||+.+..      ...+.++|..+++-........        .+.++....
T Consensus       103 --------~~~~~~~~~~s~~~SpDG~~l~vs~~~------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (432)
T d1qksa2         103 --------IGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI  168 (432)
T ss_dssp             --------CCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred             --------cCCCCCCeEEecccCCCCCEEEEEcCC------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEE
Confidence                    0111211111       3457776543      2348889999887665432110        011221111


Q ss_pred             EEEECC-EEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCCCCCceEEEEcCcE-EEEEeCCCCCcCCCcEEEE
Q 010571          147 VTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRY-LIVFGGCSHSIFFNDLHVL  224 (507)
Q Consensus       147 ~~~~~~-~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~~-l~i~GG~~~~~~~~~i~~~  224 (507)
                      ++.-++ .+++-..      ..+.+..+|..+.+-..+..   .+....-+.++...++. +++.+..     .+.+..+
T Consensus       169 ~~s~dg~~~~vs~~------~~~~i~~~d~~~~~~~~~~~---i~~g~~~~~~~~spdg~~~~va~~~-----~~~v~v~  234 (432)
T d1qksa2         169 LASHYRPEFIVNVK------ETGKILLVDYTDLNNLKTTE---ISAERFLHDGGLDGSHRYFITAANA-----RNKLVVI  234 (432)
T ss_dssp             EECSSSSEEEEEET------TTTEEEEEETTCSSEEEEEE---EECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEE
T ss_pred             EECCCCCEEEEEEc------cCCeEEEEEccCCCcceEEE---EcccCccccceECCCCCEEEEeccc-----cceEEEe
Confidence            111233 3443322      13468888887765443331   22234445566666654 4444332     2668888


Q ss_pred             ECCCCcEEee
Q 010571          225 DLQTNEWSQP  234 (507)
Q Consensus       225 d~~~~~W~~~  234 (507)
                      |..+......
T Consensus       235 d~~~~~~~~~  244 (432)
T d1qksa2         235 DTKEGKLVAI  244 (432)
T ss_dssp             ETTTTEEEEE
T ss_pred             ecccceEEEE
Confidence            8887766553

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.01  E-value=8.5  Score=32.11  Aligned_cols=60  Identities=12%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             EEEEeCCCCCcCCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEE--CCEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571          206 LIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       206 l~i~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      +++.|+.+     ..+..+|+.++.....-. +    ....-..+.+  ++.+++.||.++     .+.+||+.+..
T Consensus       219 ~~~~~~~d-----~~i~~~~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~  280 (317)
T d1vyhc1         219 FLLSGSRD-----KTIKMWDVSTGMCLMTLV-G----HDNWVRGVLFHSGGKFILSCADDK-----TLRVWDYKNKR  280 (317)
T ss_dssp             EEEEEETT-----SEEEEEETTTTEEEEEEE-C----CSSCEEEEEECSSSSCEEEEETTT-----EEEEECCTTSC
T ss_pred             eeEeccCC-----CEEEEEECCCCcEEEEEe-C----CCCCEEEEEECCCCCEEEEEECCC-----eEEEEECCCCc
Confidence            45555543     457888888776433211 1    1111122222  456777776443     47788876653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.73  E-value=14  Score=35.21  Aligned_cols=129  Identities=12%  Similarity=0.141  Sum_probs=70.2

Q ss_pred             ceEEEECCEEEEEcCCCCCccCCceEEEECCCCc--eeEeeeccccccCccccCCccCCCCCccceeeEEECCEEEEEcc
Q 010571           31 HAAAVFDQKLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG  108 (507)
Q Consensus        31 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~iyv~GG  108 (507)
                      .+-+++++.||+...      ...++.+|..|++  |+.-+..+..          ..+......-+.+..+++||+.-.
T Consensus        62 stPiv~~g~vy~~t~------~~~v~AlDa~TG~~lW~~~~~~~~~----------~~~~~~~~~rg~a~~~~~i~~~t~  125 (582)
T d1flga_          62 SQAIVSDGVIYVTAS------YSRLFALDAKTGKRLWTYNHRLPDD----------IRPCCDVVNRGAAIYGDKVFFGTL  125 (582)
T ss_dssp             CCCEEETTEEEEEET------TTEEEEEESSSCCEEEEEECCCCTT----------CCCSSCSCCCCCEEETTEEEEEET
T ss_pred             cCCEEECCEEEEeCC------CCeEEEEeCCCCCeEEEEcCCCCCc----------cccccccccCCceEeCCceEEecC
Confidence            345678999998765      3579999999984  8754332210          000011122345667888887421


Q ss_pred             cCCCCCCcceEEEEECCCC--cEEEeecCCCCCC--CcccceEEEEC---CEEEEEcCcCC-CCCccCcEEEEEcCCCc-
Q 010571          109 HYKKSSDSMIVRFIDLETN--LCGVMETSGKVPV--ARGGHSVTLVG---SRLIIFGGEDR-SRKLLNDVHFLDLETMT-  179 (507)
Q Consensus       109 ~~~~~~~~~~~~~~d~~t~--~W~~~~~~g~~p~--~r~~~~~~~~~---~~l~~~GG~~~-~~~~~~~~~~~d~~t~~-  179 (507)
                             ...++.+|..|+  .|+....  ....  ...+...+..+   ..++++.|... .......+..||..|++ 
T Consensus       126 -------~~~l~alda~tG~~~W~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~  196 (582)
T d1flga_         126 -------DASVVALNKNTGKVVWKKKFA--DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             -------TTEEEEEESSSCCEEEEEECS--CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             -------CCeEEEecccccceeeeeccc--CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcE
Confidence                   235889999988  5765431  1111  11222222222   23344444322 21234568999998875 


Q ss_pred             -EEEee
Q 010571          180 -WDAVE  184 (507)
Q Consensus       180 -W~~~~  184 (507)
                       |+...
T Consensus       197 ~W~~~~  202 (582)
T d1flga_         197 IWMRPF  202 (582)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence             76544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=84.53  E-value=17  Score=34.40  Aligned_cols=125  Identities=14%  Similarity=0.071  Sum_probs=71.3

Q ss_pred             ceeeEEECCEEEEEcccCCCCCCcceEEEEECCCC--cEEEeecCC-----CCCCCcccceEEEECCEEEEEcCcCCCCC
Q 010571           93 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSG-----KVPVARGGHSVTLVGSRLIIFGGEDRSRK  165 (507)
Q Consensus        93 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~t~--~W~~~~~~g-----~~p~~r~~~~~~~~~~~l~~~GG~~~~~~  165 (507)
                      ..+-+++++.||+...       ...++.+|..|+  .|+......     ...........+..++.||+...      
T Consensus        59 ~stPiv~~g~vyv~t~-------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------  125 (560)
T d1kv9a2          59 EATPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------  125 (560)
T ss_dssp             CCCCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------
T ss_pred             EeCCEEECCEEEEECC-------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC------
Confidence            3455788999998764       346899999988  487532100     01111222345566788777542      


Q ss_pred             ccCcEEEEEcCCCc--EEEeecCCCCCCCCCCceEEEEcCcEEEEEeCCC-CCcCCCcEEEEECCCCc--EEee
Q 010571          166 LLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNE--WSQP  234 (507)
Q Consensus       166 ~~~~~~~~d~~t~~--W~~~~~~g~~p~~r~~~~~~~~~~~~l~i~GG~~-~~~~~~~i~~~d~~~~~--W~~~  234 (507)
                       -..++.+|..+++  |.....  .........+...+.++ .+|+|+.. .......+..||..++.  |+.-
T Consensus       126 -~g~l~Alda~tG~~~w~~~~~--~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         126 -DGRLIALDAKTGKAIWSQQTT--DPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             -TSEEEEEETTTCCEEEEEECS--CTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             -CCEEEEEECCCCcEEeccCcc--CcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeee
Confidence             2359999988875  655432  22222222223334466 44455433 22334569999999885  7763

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.01  E-value=2.4  Score=30.56  Aligned_cols=16  Identities=6%  Similarity=0.235  Sum_probs=6.1

Q ss_pred             HHHHHHHhHHHHHHHH
Q 010571          470 EVQILRQQKSAFEQEM  485 (507)
Q Consensus       470 e~~~~~~~~~~~~~~~  485 (507)
                      ++..+.+++..+++++
T Consensus        80 ~i~~l~~q~~~l~~~l   95 (107)
T d1fxka_          80 REKTIERQEERVMKKL   95 (107)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=81.57  E-value=13  Score=30.75  Aligned_cols=249  Identities=10%  Similarity=0.045  Sum_probs=116.3

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-CCEEEEEcccCCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKSSD  115 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~  115 (507)
                      |+.|.+...       .++|++|+.++.-+++....                 .....-...- +.+|.+....... ..
T Consensus        12 G~~v~f~~~-------~dl~~~d~~~g~~~~Lt~~~-----------------~~~~~p~~SPDG~~iaf~~~~~~~-~~   66 (281)
T d1k32a2          12 GDRIIFVCC-------DDLWEHDLKSGSTRKIVSNL-----------------GVINNARFFPDGRKIAIRVMRGSS-LN   66 (281)
T ss_dssp             TTEEEEEET-------TEEEEEETTTCCEEEEECSS-----------------SEEEEEEECTTSSEEEEEEEESTT-CC
T ss_pred             CCEEEEEeC-------CcEEEEECCCCCEEEEecCC-----------------CcccCEEECCCCCEEEEEEeeCCC-CC
Confidence            666554432       36999999998877765432                 1111111122 4556555433322 22


Q ss_pred             cceEEEEECCCCcEEEeecCCCCC-CCcccceEEEE--CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeecCCCCCCC
Q 010571          116 SMIVRFIDLETNLCGVMETSGKVP-VARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAP  192 (507)
Q Consensus       116 ~~~~~~~d~~t~~W~~~~~~g~~p-~~r~~~~~~~~--~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~~g~~p~~  192 (507)
                      ..++++++..++....+...+... ..+........  +++.+++.-..........+...+...........      .
T Consensus        67 ~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  140 (281)
T d1k32a2          67 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL------G  140 (281)
T ss_dssp             EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS------C
T ss_pred             ceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC------C
Confidence            457999999999988875321110 11122222222  44444443333222234446666766655544321      1


Q ss_pred             CCCceEEEEcCcEEEEEeCCCCCc------CCCcEEEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCC
Q 010571          193 RYDHSAALHANRYLIVFGGCSHSI------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN  266 (507)
Q Consensus       193 r~~~~~~~~~~~~l~i~GG~~~~~------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~  266 (507)
                      .. .......+..++.+.......      ..............-....     ............++.++.....   .
T Consensus       141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~  211 (281)
T d1k32a2         141 PA-THILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-----DMSTHVSSPVIVGHRIYFITDI---D  211 (281)
T ss_dssp             SC-SEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-----CCSSCCEEEEEETTEEEEEECT---T
T ss_pred             cc-ceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeecc-----CCccccceeeeeccccceeccc---c
Confidence            11 122333344344443322111      0111222222222222211     1111222223345555554332   2


Q ss_pred             CcceEEEEEcCcCeeEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcccCCCcCCeEEEEECCCCCCCCCcc
Q 010571          267 GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKI  340 (507)
Q Consensus       267 ~~~d~~~~d~~~~~W~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~v~~~~~~~~~w~~~~~  340 (507)
                      ...++|++|+.+..-++|.....        ........++...+|..+       .++|.+|+.+..-..+.+
T Consensus       212 ~~~~l~~~d~~g~~~~~lt~~~~--------~~~~~~SpDG~~I~f~~~-------~~l~~~d~~~g~~~~i~~  270 (281)
T d1k32a2         212 GFGQIYSTDLDGKDLRKHTSFTD--------YYPRHLNTDGRRILFSKG-------GSIYIFNPDTEKIEKIEI  270 (281)
T ss_dssp             SSCEEEEEETTSCSCEECCCCCS--------SCEEEEEESSSCEEEEET-------TEEEEECTTTCCEEECCC
T ss_pred             cccceEEEeCCCCceEEeecCCC--------cccccCcCCCCEEEEEeC-------CEEEEEECCCCCEEEecc
Confidence            34579999999988777654321        112223344443333333       369999998776655443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=81.22  E-value=15  Score=31.21  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=39.6

Q ss_pred             CCEEEEEcCCCCCccCCceEEEECCCCceeEeeeccccccCccccCCccCCCCCccceeeEEE-C-CEEEEEcccCCCCC
Q 010571           37 DQKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-G-TKLLILGGHYKKSS  114 (507)
Q Consensus        37 ~~~lyv~GG~~~~~~~~~~~~~d~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~  114 (507)
                      +++++++|+..     +.+.+||+.+++-...-..+.                ...-.+++.. + ..+|+.+..     
T Consensus         7 ~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~~~----------------~~~p~~l~~spDG~~l~v~~~~-----   60 (346)
T d1jmxb_           7 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPD----------------KFGPGTAMMAPDNRTAYVLNNH-----   60 (346)
T ss_dssp             TCEEEEEEETT-----TEEEEEETTTTEEEEEEECSS----------------CCSSCEEEECTTSSEEEEEETT-----
T ss_pred             CCcEEEEEcCC-----CEEEEEECCCCCEEEEEEcCC----------------CCCcceEEECCCCCEEEEEECC-----
Confidence            56777777743     579999999986543222211                1111233332 3 567777643     


Q ss_pred             CcceEEEEECCCCcEE
Q 010571          115 DSMIVRFIDLETNLCG  130 (507)
Q Consensus       115 ~~~~~~~~d~~t~~W~  130 (507)
                       .+.+.+||+.+++=.
T Consensus        61 -~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_          61 -YGDIYGIDLDTCKNT   75 (346)
T ss_dssp             -TTEEEEEETTTTEEE
T ss_pred             -CCcEEEEeCccCeee
Confidence             235899999987543

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.07  E-value=12  Score=29.94  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=55.2

Q ss_pred             CCEEEEEcCcCCCCCccCcEEEEEcCCCcEEEeec--C--CCCCCCCCCceEEEE-----cCcEEEEEeCCCCCcCCCcE
Q 010571          151 GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV--T--QTPPAPRYDHSAALH-----ANRYLIVFGGCSHSIFFNDL  221 (507)
Q Consensus       151 ~~~l~~~GG~~~~~~~~~~~~~~d~~t~~W~~~~~--~--g~~p~~r~~~~~~~~-----~~~~l~i~GG~~~~~~~~~i  221 (507)
                      ++++|+|-|.        .+++|+-.+....-+..  .  ..+|. .. -++...     .++.+|+|-|       +..
T Consensus        59 ~~~~yfFkG~--------~yw~y~~~~~~~gyPk~i~~~~~glp~-~i-DAA~~~~~~~~~~~~~yfFkg-------~~y  121 (192)
T d1qhua1          59 HTSVYLIKGD--------KVWVYTSEKNEKVYPKSLQDEFPGIPF-PL-DAAVECHRGECQDEGILFFQG-------NRK  121 (192)
T ss_dssp             TTEEEEEETT--------EEEEECC-------CEEHHHHSTTCCS-SC-CEEEEECBBTBSSSEEEEEET-------TEE
T ss_pred             CCcEEEEeCC--------EEEEEeCCccccCCCcChHHhCCCCCC-Cc-eEEEEccccccCCCeEEEEeC-------CeE
Confidence            5689999764        47777644333211111  0  02221 12 233332     4678999988       568


Q ss_pred             EEEECCCCcEEeeeecCCCCCCCcceEEEEECCEEEEEeccCCCCCcceEEEEEcCcCe
Q 010571          222 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA  280 (507)
Q Consensus       222 ~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~d~~~~d~~~~~  280 (507)
                      |.||..+..=..- .-+.+  +.. .+++..++.+|+|-|.       ..|.||..+.+
T Consensus       122 w~yd~~~~~~~~~-~w~gi--p~~-daA~~~~g~~YfFkg~-------~y~r~~~~~~~  169 (192)
T d1qhua1         122 WFWDLTTGTKKER-SWPAV--GNC-TSALRWLGRYYCFQGN-------QFLRFNPVSGE  169 (192)
T ss_dssp             EEEETTTTEEEEE-CCTTS--CCC-SEEEEETTEEEEEETT-------EEEEECTTTCC
T ss_pred             EEEeCCCCCcccc-cccCc--CCc-ceeEEeCCcEEEEECC-------EEEEEcCCcce
Confidence            9999887642211 00112  222 3555678999999662       57888877654

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.84  E-value=12  Score=30.03  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=55.3

Q ss_pred             CCEEEEEcccCCCCCCcceEEEEECCCCcE---EEeecCCCCCCCcccceEEE-E--CCEEEEEcCcCCCCCccCcEEEE
Q 010571          100 GTKLLILGGHYKKSSDSMIVRFIDLETNLC---GVMETSGKVPVARGGHSVTL-V--GSRLIIFGGEDRSRKLLNDVHFL  173 (507)
Q Consensus       100 ~~~iyv~GG~~~~~~~~~~~~~~d~~t~~W---~~~~~~g~~p~~r~~~~~~~-~--~~~l~~~GG~~~~~~~~~~~~~~  173 (507)
                      ++++|+|-|.        .+|+|+-.+...   +.+...| +|......-++. .  ++++|+|-|.        ..+.|
T Consensus        69 ~~~~yffkg~--------~~~~y~~~~~~~gyPk~i~~~g-~p~~~~~iDAA~~~~~~g~~YfFkg~--------~y~ry  131 (200)
T d1gena_          69 EEKAVFFAGN--------EYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRY  131 (200)
T ss_dssp             TTEEEEEETT--------EEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEETT--------EEEEE
T ss_pred             CCeEEEecCc--------eEEEEcCcccccCCCceehhcC-CCCCccceeeEEEECCCCeEEEEeCc--------EEEEe
Confidence            6788888763        377776432111   1111111 232222222333 2  4689999773        58889


Q ss_pred             EcCCCcEEE-----eec-CCCCCCCCCCceEEEE-cCcEEEEEeCCCCCcCCCcEEEEECCCCcE
Q 010571          174 DLETMTWDA-----VEV-TQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEW  231 (507)
Q Consensus       174 d~~t~~W~~-----~~~-~g~~p~~r~~~~~~~~-~~~~l~i~GG~~~~~~~~~i~~~d~~~~~W  231 (507)
                      |..+.+-..     +.. =..+|. + -.++... .++++|+|-|       +..+.||..+...
T Consensus       132 d~~~~~vd~~yPk~I~~~w~gvp~-~-idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~~  187 (200)
T d1gena_         132 NEVKKKMDPGFPKLIADAWNAIPD-N-LDAVVDLQGGGHSYFFKG-------AYYLKLENQSLKS  187 (200)
T ss_dssp             ETTTTEECSSCCEEHHHHSSSCCS-S-CSEEEECTTTCEEEEEET-------TEEEEEETTEEEE
T ss_pred             ccccceeccCcceehhhccCCCCC-C-ccEEEEecCCCEEEEEEC-------CEEEEEECCceEE
Confidence            987654211     110 012332 2 2334443 4678999988       5678888665443