Citrus Sinensis ID: 010573
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 507 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M5K3 | 507 | Dihydrolipoyl dehydrogena | yes | no | 0.998 | 0.998 | 0.881 | 0.0 | |
| Q9M5K2 | 507 | Dihydrolipoyl dehydrogena | no | no | 0.998 | 0.998 | 0.872 | 0.0 | |
| P31023 | 501 | Dihydrolipoyl dehydrogena | N/A | no | 0.986 | 0.998 | 0.862 | 0.0 | |
| O17953 | 495 | Dihydrolipoyl dehydrogena | yes | no | 0.921 | 0.943 | 0.582 | 1e-162 | |
| Q60HG3 | 509 | Dihydrolipoyl dehydrogena | N/A | no | 0.980 | 0.976 | 0.57 | 1e-159 | |
| P09622 | 509 | Dihydrolipoyl dehydrogena | yes | no | 0.980 | 0.976 | 0.57 | 1e-159 | |
| Q54EW8 | 488 | Dihydrolipoyl dehydrogena | yes | no | 0.887 | 0.922 | 0.612 | 1e-159 | |
| Q8CIZ7 | 509 | Dihydrolipoyl dehydrogena | yes | no | 0.996 | 0.992 | 0.561 | 1e-158 | |
| P09623 | 509 | Dihydrolipoyl dehydrogena | yes | no | 0.917 | 0.913 | 0.589 | 1e-157 | |
| Q5R4B1 | 509 | Dihydrolipoyl dehydrogena | yes | no | 0.980 | 0.976 | 0.564 | 1e-157 |
| >sp|Q9M5K3|DLDH1_ARATH Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/508 (88%), Positives = 485/508 (95%), Gaps = 2/508 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
MAMASLARRKAY L+RNLSNS + ++SFSL+RGFAS+ SDENDVV+IGGGPGGYVAA
Sbjct: 1 MAMASLARRKAYFLTRNLSNSPT-DALRFSFSLSRGFASSGSDENDVVIIGGGPGGYVAA 59
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKA+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEV
Sbjct: 60 IKASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEV 119
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DLPAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNT+VKGK+
Sbjct: 120 DLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKH 179
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
II+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSE 239
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE
Sbjct: 240 VTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGE 299
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
++ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGP
Sbjct: 300 QSILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGP 359
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGK 419
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI
Sbjct: 420 FPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEALKEAAMAT+DKPIHI
Sbjct: 480 ARVCHAHPTMSEALKEAAMATYDKPIHI 507
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 4 |
| >sp|Q9M5K2|DLDH2_ARATH Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/508 (87%), Positives = 480/508 (94%), Gaps = 2/508 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
MAMASLARRKAY L+RN+SNS + F++SFSLTRGFAS+ SD+NDVV+IGGGPGGYVAA
Sbjct: 1 MAMASLARRKAYFLTRNISNSPT-DAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGYVAA 59
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H FA+HGVK SSVEV
Sbjct: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKVSSVEV 119
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DLPAM+AQKD AV NLTRG+EGLFKKNKV YVKGYGKF+SPSEVSVDTI+G N VVKGK+
Sbjct: 120 DLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKH 179
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
II+ATGSDVKSLPGITIDEK+IVSSTGAL+L E+PKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSE 239
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFAADIVP+MDGEIRKQFQRSLEKQKMKFMLKTKVVGVD SGDGVKL +EPA GGE
Sbjct: 240 VTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGE 299
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
+T LEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct: 300 QTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAIGDVIPGP 359
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYT+PEVASVGKTEEQ+K+ GV Y VGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVGKTEEQLKKEGVSYNVGK 419
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID AEG+VKILA+KETDKILGVHIM+PNAGELIHEAVLAINYDASSEDI
Sbjct: 420 FPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDI 479
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEA+KEAAMAT+DKPIH+
Sbjct: 480 ARVCHAHPTMSEAIKEAAMATYDKPIHM 507
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|P31023|DLDH_PEA Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisum sativum GN=LPD PE=1 SV=2 | Back alignment and function description |
|---|
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/508 (86%), Positives = 476/508 (93%), Gaps = 8/508 (1%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSL-TRGFASASDENDVVVIGGGPGGYVAA 59
MAMA+LARRK Y L LS+ + +YSFSL +R FAS SDENDVV+IGGGPGGYVAA
Sbjct: 1 MAMANLARRKGYSL---LSSET----LRYSFSLRSRAFASGSDENDVVIIGGGPGGYVAA 53
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HGVK S+VE+
Sbjct: 54 IKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI 113
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF+SPSE+SVDTIEG NTVVKGK+
Sbjct: 114 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKH 173
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
IIIATGSDVKSLPG+TIDEK+IVSSTGALAL+E+PKKLVVIGAGYIGLEMGSVW R+GSE
Sbjct: 174 IIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE 233
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFA++IVP+MD EIRKQFQRSLEKQ MKF LKTKVVGVD SGDGVKLT+EP+AGGE
Sbjct: 234 VTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGE 293
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
+TI+EADVVLVSAGRTPFT+GL LDKIGVETDK+GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct: 294 QTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 353
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVE+LAGK GHVDYDKVPGVVYT+PEVASVGKTEEQVKE GVEYRVGK
Sbjct: 354 MLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGK 413
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID+AEG+VKI+AEKETDKILGVHIMAPNAGELIHEA +A+ YDASSEDI
Sbjct: 414 FPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDI 473
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEA+KEAAMAT+DKPIHI
Sbjct: 474 ARVCHAHPTMSEAIKEAAMATYDKPIHI 501
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|O17953|DLDH_CAEEL Dihydrolipoyl dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=dld-1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 570 bits (1469), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/470 (58%), Positives = 352/470 (74%), Gaps = 3/470 (0%)
Query: 33 LTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
L R +++ D D+VVIGGGPGGYVAAIKAAQLG+KT C+EK LGGTCLNVGCIPSKA
Sbjct: 20 LARNYSNTQDA-DLVVIGGGPGGYVAAIKAAQLGMKTVCVEKNATLGGTCLNVGCIPSKA 78
Query: 93 LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
LL++SH H A H FA+ G+ ++ ++LP MM K +V LT GI+ LFK NKV +V+
Sbjct: 79 LLNNSHYLHMAQHDFAARGIDCTA-SLNLPKMMEAKSNSVKQLTGGIKQLFKANKVGHVE 137
Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
G+ + P+ V +G + +NI+IA+GS+V PGITIDEK+IVSSTGAL+L +
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILIASGSEVTPFPGITIDEKQIVSSTGALSLGQ 197
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMK 271
VPKK+VVIGAG IGLE+GSVW RLG+EVT VEF + +DGE+ K FQRSL KQ K
Sbjct: 198 VPKKMVVIGAGVIGLELGSVWQRLGAEVTAVEFLGHVGGMGIDGEVSKNFQRSLTKQGFK 257
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
F+L TKV+G +G + + +E A G+K LE D +LVS GR P+T GLGL + ++ D
Sbjct: 258 FLLNTKVMGASQNGSTITVEVEGAKDGKKQTLECDTLLVSVGRRPYTEGLGLSNVQIDLD 317
Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
GR+PVNERF T +P ++AIGDVI GPMLAHKAE++G+ CVE +AG H+DY+ VP V
Sbjct: 318 NRGRVPVNERFQTKVPSIFAIGDVIEGPMLAHKAEDEGILCVEGIAGGPVHIDYNCVPSV 377
Query: 392 VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILG 451
VYTHPEVA VGK EEQ+K+ GV Y++GKFPF+ANSRAK +D EG VK+LA+K+TD++LG
Sbjct: 378 VYTHPEVAWVGKAEEQLKQEGVAYKIGKFPFVANSRAKTNNDQEGFVKVLADKQTDRMLG 437
Query: 452 VHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501
VHI+ PNAGE+I EA LA+ Y AS+ED+ARVCH HPT+SEA +EA +A +
Sbjct: 438 VHIIGPNAGEMIAEATLAMEYGASAEDVARVCHPHPTLSEAFREANLAAY 487
|
Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q60HG3|DLDH_MACFA Dihydrolipoyl dehydrogenase, mitochondrial OS=Macaca fascicularis GN=DLD PE=2 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust.
Identities = 285/500 (57%), Positives = 357/500 (71%), Gaps = 3/500 (0%)
Query: 3 MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKA 62
M S +R + R N + + S R +A + DV VIG GPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLAKRGHFNRISHGLQGLSAVPLRTYADQLIDADVTVIGSGPGGYVAAIKA 60
Query: 63 AQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121
AQLG KT C+EK LGGTCLNVGCIPSKALL++SH YH A FAS G++ S V ++L
Sbjct: 61 AQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120
Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
MM QK AV LT GI LFK+NKV +V GYGK ++V+ ++GG VV KNI+
Sbjct: 121 DKMMEQKSTAVKALTGGIAHLFKQNKVIHVNGYGKITGKNQVTATKVDGGTQVVDTKNIL 180
Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
IATGS+V PGITIDE IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RLG++VT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240
Query: 242 VVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGE 299
VEF + +D EI K FQR L+KQ KF L TKV G DG + +++E A+GG+
Sbjct: 241 AVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 300
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
++ DV+LV GR PFT LGL+++G+E D GRIPVN RF T IP +YAIGDV+ GP
Sbjct: 301 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 360
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAE++G+ CVE +AG H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGK
Sbjct: 361 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGK 420
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF ANSRAK D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y AS EDI
Sbjct: 421 FPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDI 480
Query: 480 ARVCHAHPTMSEALKEAAMA 499
ARVCHAHPT+SEA +EA +A
Sbjct: 481 ARVCHAHPTLSEAFREANLA 500
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction. Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|P09622|DLDH_HUMAN Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2 | Back alignment and function description |
|---|
Score = 562 bits (1449), Expect = e-159, Method: Compositional matrix adjust.
Identities = 285/500 (57%), Positives = 356/500 (71%), Gaps = 3/500 (0%)
Query: 3 MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKA 62
M S +R + R N + + S R +A + DV VIG GPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLAKRGHFNRISHGLQGLSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 63 AQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121
AQLG KT CIEK LGGTCLNVGCIPSKALL++SH YH A FAS G++ S V ++L
Sbjct: 61 AQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120
Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
MM QK AV LT GI LFK+NKV +V GYGK ++V+ +GG V+ KNI+
Sbjct: 121 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNIL 180
Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
IATGS+V PGITIDE IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RLG++VT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240
Query: 242 VVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGE 299
VEF + +D EI K FQR L+KQ KF L TKV G DG + +++E A+GG+
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 300
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
++ DV+LV GR PFT LGL+++G+E D GRIPVN RF T IP +YAIGDV+ GP
Sbjct: 301 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 360
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAE++G+ CVE +AG H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGK
Sbjct: 361 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGK 420
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF ANSRAK D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y AS EDI
Sbjct: 421 FPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDI 480
Query: 480 ARVCHAHPTMSEALKEAAMA 499
ARVCHAHPT+SEA +EA +A
Sbjct: 481 ARVCHAHPTLSEAFREANLA 500
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q54EW8|DLDH_DICDI Dihydrolipoyl dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=lpd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 277/452 (61%), Positives = 340/452 (75%), Gaps = 2/452 (0%)
Query: 58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
A IKA QLG+K T +EKRG LGGTCLNVGCIPSKALL++SH+Y EA + +GVK S V
Sbjct: 37 AGIKAGQLGMKVTVVEKRGKLGGTCLNVGCIPSKALLNASHLYEEATTKMSKYGVKCSGV 96
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
E+DL AMM KDK+VS LT GIEGLFKKNKV Y KG+GK P+ V V +G ++
Sbjct: 97 ELDLGAMMQYKDKSVSGLTSGIEGLFKKNKVKYDKGFGKITGPNTVEVTLNDGSVKTIET 156
Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
KNI+IATGS+V SLP + IDE+ I+SSTGALAL VPKKL+VIG G IGLE+GSVW+RLG
Sbjct: 157 KNIVIATGSEVTSLPNVNIDEESIISSTGALALKSVPKKLIVIGGGVIGLELGSVWSRLG 216
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP-A 295
SE TVVEF I DGE+ K+FQ+SLEKQ MKF L+TKV V DG V +T+E
Sbjct: 217 SETTVVEFTNRIAAGADGEVAKKFQKSLEKQHMKFHLETKVTSVVKKSDGKVTVTVEQVG 276
Query: 296 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
AGG LEAD VLVS GR P T+GLGL+ +G+ TDK GR+ V + F T +P ++AIGD
Sbjct: 277 AGGFTGTLEADAVLVSVGRRPNTSGLGLESVGIPTDKAGRVEVGDHFNTKVPSIFAIGDA 336
Query: 356 IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEY 415
I GPMLAHKAEE+G+A +E + GHV+Y +P ++YTHPEVA VGKTEE++++ G++Y
Sbjct: 337 IRGPMLAHKAEEEGIAIIEQIHNGGGHVNYGAIPSIIYTHPEVAWVGKTEEELQKEGIQY 396
Query: 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDAS 475
+G+FPF+ANSRAK DD EG VK LA K++D++LG HIM NAGELI E VLA+ Y AS
Sbjct: 397 NIGRFPFVANSRAKTNDDVEGFVKFLAAKDSDRVLGAHIMGTNAGELIGECVLAMEYGAS 456
Query: 476 SEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
EDIAR CH HPT+SEA+KEAAM +DKPIH+
Sbjct: 457 CEDIARTCHGHPTLSEAVKEAAMDAYDKPIHM 488
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q8CIZ7|DLDH_CRIGR Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus GN=DLD PE=2 SV=1 | Back alignment and function description |
|---|
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/509 (56%), Positives = 360/509 (70%), Gaps = 4/509 (0%)
Query: 3 MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKA 62
M S +R + R N + + S R +A + DV VIG GPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLAKRGHFNRISHGLQGVSSVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 63 AQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121
AQLG KT CIEK LGGTCLNVGCIPSKALL++SH YH A FAS G++ S V ++L
Sbjct: 61 AQLGFKTVCIEKNDTLGGTCLNVGCIPSKALLNNSHYYHLAHGRDFASRGIELSEVRLNL 120
Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
MM QK AV L GI LFK+NKV +V G+GK ++V+ +G + V+ KNI+
Sbjct: 121 EKMMEQKSSAVKALIGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSSQVIGTKNIL 180
Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
IATGS+V PGITIDE IVSSTGAL+L +VP+KLVVIGAG IG+E+GSVW RLG++VT
Sbjct: 181 IATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVT 240
Query: 242 VVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGE 299
VEF + +D EI K FQR L+KQ KF L TKV G DG + +++E A+GG+
Sbjct: 241 AVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTKVTGATKRSDGKIDVSVEAASGGK 300
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
++ DV+LV GR PFT LGL+++G+E D GRIPVN RF T IP +YAIGDV+ GP
Sbjct: 301 AEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 360
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAE++G+ CVE +AG H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGK
Sbjct: 361 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGK 420
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF ANSRAK D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y AS EDI
Sbjct: 421 FPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDI 480
Query: 480 ARVCHAHPTMSEALKEAAM-ATHDKPIHI 507
ARVCHAHPT+SEA +EA + A+ KPI+
Sbjct: 481 ARVCHAHPTLSEAFREANLAASFGKPINF 509
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction. Cricetulus griseus (taxid: 10029) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|P09623|DLDH_PIG Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 556 bits (1433), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/468 (58%), Positives = 344/468 (73%), Gaps = 3/468 (0%)
Query: 35 RGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALL 94
R +A + DV VIG GPGGYVAAIKAAQLG KT CIEK LGGTCLNVGCIPSKALL
Sbjct: 33 RTYADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALL 92
Query: 95 HSSHMYHEAM-HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG 153
++SH YH A FAS G++ S V ++L MM QK AV LT GI LFK+NKV V G
Sbjct: 93 NNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNG 152
Query: 154 YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEV 213
YGK ++V+ +G V+ KNI+IATGS+V PGITIDE +VSSTGAL+L +V
Sbjct: 153 YGKITGKNQVTATKADGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKV 212
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF 272
P+K+VVIGAG IG+E+GSVW RLG++VT VE + +D E+ K FQR L+KQ KF
Sbjct: 213 PEKMVVIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQKQGFKF 272
Query: 273 MLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
L TKV+G DG + +++E A+GG+ ++ DV+LV GR PFT LGL+++G+E D
Sbjct: 273 KLNTKVIGATKKSDGNIDVSIEAASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELD 332
Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG H+DY+ VP V
Sbjct: 333 PRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSV 392
Query: 392 VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILG 451
+YTHPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK D +G+VKIL +K TD++LG
Sbjct: 393 IYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLG 452
Query: 452 VHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 499
HI+ P AGE+I+EA LA+ Y AS EDIARVCHAHPT+SEA +EA +A
Sbjct: 453 AHIIGPGAGEMINEAALALEYGASCEDIARVCHAHPTLSEAFREANLA 500
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction. Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q5R4B1|DLDH_PONAB Dihydrolipoyl dehydrogenase, mitochondrial OS=Pongo abelii GN=DLD PE=2 SV=1 | Back alignment and function description |
|---|
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 282/500 (56%), Positives = 354/500 (70%), Gaps = 3/500 (0%)
Query: 3 MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKA 62
M S +R + R N + + S R +A + DV VIG GPGGYVAAIKA
Sbjct: 1 MQSWSRVYCSLAKRGHFNRISHGLQGLSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKA 60
Query: 63 AQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121
AQLG KT C+EK LGGTCLNVGCIPSKALL++SH YH A FAS G++ S V ++L
Sbjct: 61 AQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNL 120
Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
MM QK AV LT GI LFK+NKV +V GYGK ++V+ +GG V+ KNI+
Sbjct: 121 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNIL 180
Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
IATGS+V PGI IDE IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RLG++VT
Sbjct: 181 IATGSEVTPFPGIMIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVT 240
Query: 242 VVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGE 299
VEF + +D EI K FQR L+KQ KF L TKV G DG + +++E A+GG+
Sbjct: 241 AVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGK 300
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
++ DV+LV GR PFT LGL+++G+E D GRIPVN RF T IP +YAIGDV+ GP
Sbjct: 301 AEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 360
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAE++G+ CVE +AG H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGK
Sbjct: 361 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGK 420
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF ANSRAK D +G+VKIL +K TD++LG HI+ P AG +++EA LA+ Y AS EDI
Sbjct: 421 FPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGGMVNEAALALEYGASCEDI 480
Query: 480 ARVCHAHPTMSEALKEAAMA 499
ARVCHAHPT+SEA +EA +A
Sbjct: 481 ARVCHAHPTLSEAFREANLA 500
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 507 | ||||||
| 255556504 | 510 | dihydrolipoamide dehydrogenase, putative | 0.998 | 0.992 | 0.913 | 0.0 | |
| 134142802 | 511 | mitochondrial lipoamide dehydrogenase [P | 1.0 | 0.992 | 0.896 | 0.0 | |
| 211906492 | 509 | dihydrolipoamide dehydrogenase [Gossypiu | 0.998 | 0.994 | 0.915 | 0.0 | |
| 15221044 | 507 | dihydrolipoyl dehydrogenase 1 [Arabidops | 0.998 | 0.998 | 0.881 | 0.0 | |
| 224099079 | 511 | precursor of dehydrogenase dihydrolipoam | 1.0 | 0.992 | 0.898 | 0.0 | |
| 297852420 | 505 | F21D18.28 [Arabidopsis lyrata subsp. lyr | 0.994 | 0.998 | 0.885 | 0.0 | |
| 118489203 | 511 | unknown [Populus trichocarpa x Populus d | 1.0 | 0.992 | 0.898 | 0.0 | |
| 8778521 | 505 | F21D18.28 [Arabidopsis thaliana] | 0.994 | 0.998 | 0.881 | 0.0 | |
| 30684419 | 507 | dihydrolipoyl dehydrogenase 2 [Arabidops | 0.998 | 0.998 | 0.872 | 0.0 | |
| 312282677 | 507 | unnamed protein product [Thellungiella h | 0.998 | 0.998 | 0.879 | 0.0 |
| >gi|255556504|ref|XP_002519286.1| dihydrolipoamide dehydrogenase, putative [Ricinus communis] gi|223541601|gb|EEF43150.1| dihydrolipoamide dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/511 (91%), Positives = 491/511 (96%), Gaps = 5/511 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFASA-SDENDVVVIGGGPGGY 56
MAMAS ARRKAY+L+RN SNSS + +YSFSLT RGFASA SDENDVVV+GGGPGGY
Sbjct: 1 MAMASFARRKAYLLTRNFSNSSP-DALRYSFSLTSFSRGFASAGSDENDVVVVGGGPGGY 59
Query: 57 VAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116
VAAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HGVKFSS
Sbjct: 60 VAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAQHSFANHGVKFSS 119
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
VEVDLPAMM QKDKAV+NLTRGIEGLFKKNKV YVKGYGKFISPSEVSVDT++GGNTVVK
Sbjct: 120 VEVDLPAMMGQKDKAVANLTRGIEGLFKKNKVNYVKGYGKFISPSEVSVDTLDGGNTVVK 179
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
GKNIIIATGSDVKSLPGITIDEK+IVSSTGALAL+E+PKKLVVIGAGYIGLEMGSVW RL
Sbjct: 180 GKNIIIATGSDVKSLPGITIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRL 239
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
GSEVTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD SGDGVKLTLEPA+
Sbjct: 240 GSEVTVVEFAPDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLTLEPAS 299
Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
GG++TILEADVVLVSAGRTPFTAGLGLDKIGVETDK+GRIPVNE+FATN+PGV+AIGDV+
Sbjct: 300 GGDQTILEADVVLVSAGRTPFTAGLGLDKIGVETDKLGRIPVNEKFATNVPGVFAIGDVV 359
Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
PGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGVEYR
Sbjct: 360 PGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYR 419
Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASS 476
VGKFPFLANSRAKAIDDAEG+VKILAEKETDKILGVHIMAPNAGELIHEAVLA+ Y A+S
Sbjct: 420 VGKFPFLANSRAKAIDDAEGLVKILAEKETDKILGVHIMAPNAGELIHEAVLALAYGAAS 479
Query: 477 EDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
EDIARVCHAHPTMSEALKEAAMATHDKPIHI
Sbjct: 480 EDIARVCHAHPTMSEALKEAAMATHDKPIHI 510
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|134142802|gb|ABO61735.1| mitochondrial lipoamide dehydrogenase [Populus tremuloides] | Back alignment and taxonomy information |
|---|
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/511 (89%), Positives = 483/511 (94%), Gaps = 4/511 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFA-SASDENDVVVIGGGPGGY 56
MAMAS+ARRKA L+RNLSNSS+ + FK+S+SLT RGFA S S+ENDVV+IGGGPGGY
Sbjct: 1 MAMASIARRKALFLTRNLSNSSSADAFKFSYSLTKFSRGFATSGSEENDVVIIGGGPGGY 60
Query: 57 VAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116
VAAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHM+HEA HSFASHGVKFSS
Sbjct: 61 VAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAQHSFASHGVKFSS 120
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
VEVDLPAMMAQKDKAVS LTRGIEGL KKNKV YVKGYGKFISPSEVSVDT++G NTVVK
Sbjct: 121 VEVDLPAMMAQKDKAVSTLTRGIEGLLKKNKVNYVKGYGKFISPSEVSVDTVDGANTVVK 180
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
GKNIIIATGSDVKSLPGITIDE++IVSSTGALAL ++PKKLVVIGAGYIGLEMGSVW RL
Sbjct: 181 GKNIIIATGSDVKSLPGITIDEEKIVSSTGALALKKIPKKLVVIGAGYIGLEMGSVWRRL 240
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
GSEVTVVEFA DIVPSMDGE+RKQFQR LEKQKMKFMLKTKVVGVD SGDGVKLTLEPA+
Sbjct: 241 GSEVTVVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAS 300
Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
GG++T LEADVVLVSAGRTPFTAGLGLDKIGVETDK+GRI VNERFATN+ GVYAIGDVI
Sbjct: 301 GGDQTTLEADVVLVSAGRTPFTAGLGLDKIGVETDKVGRISVNERFATNVSGVYAIGDVI 360
Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
PGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGVEY
Sbjct: 361 PGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYC 420
Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASS 476
VGKFP LANSRAKAIDDAEG+VKI+AEKETDKILGVHIMAPNAGELIHEA LA+ YDASS
Sbjct: 421 VGKFPLLANSRAKAIDDAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAALALTYDASS 480
Query: 477 EDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
EDIARVCHAHPTMSEALKEAAMATHDKPIHI
Sbjct: 481 EDIARVCHAHPTMSEALKEAAMATHDKPIHI 511
|
Source: Populus tremuloides Species: Populus tremuloides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906492|gb|ACJ11739.1| dihydrolipoamide dehydrogenase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/510 (91%), Positives = 487/510 (95%), Gaps = 4/510 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFASASDENDVVVIGGGPGGYV 57
MA+ASL RRKAY+LSRNLSNS + KYSFSL+ RGFAS S+ENDVVVIGGGPGGYV
Sbjct: 1 MALASLVRRKAYLLSRNLSNSP-ADALKYSFSLSNFSRGFASGSEENDVVVIGGGPGGYV 59
Query: 58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
AAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHMYHEA HSFA HGVKFSSV
Sbjct: 60 AAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEATHSFAGHGVKFSSV 119
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
E+DLPAMMAQKDKAVSNLTRGIEGLFKKNKV YVKGYGKFISPSEVSVDTIEGG+TVVKG
Sbjct: 120 EIDLPAMMAQKDKAVSNLTRGIEGLFKKNKVNYVKGYGKFISPSEVSVDTIEGGSTVVKG 179
Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
KNIIIATGSDVKSLPGITIDEKRIVSSTGALAL EVPKKL+VIGAGYIGLEMGSVW RLG
Sbjct: 180 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALQEVPKKLIVIGAGYIGLEMGSVWGRLG 239
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
SEVTVVEFA DIVPSMD EIRKQFQRSLEKQKMKFMLKTKVVGVD SG+GVKLT+EPAAG
Sbjct: 240 SEVTVVEFAPDIVPSMDAEIRKQFQRSLEKQKMKFMLKTKVVGVDTSGNGVKLTVEPAAG 299
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
G++T LEADVVLVSAGR+PFTAGLGLDKIGVETDK+GRI VN+RFATN+ GVYAIGDVIP
Sbjct: 300 GDQTTLEADVVLVSAGRSPFTAGLGLDKIGVETDKIGRILVNDRFATNVAGVYAIGDVIP 359
Query: 358 GPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV 417
GPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGV+YRV
Sbjct: 360 GPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVDYRV 419
Query: 418 GKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSE 477
GKFPFLANSRAKAIDDAEGIVKILA+KETDKILGVHIMAPNAGELIHEAVLAINYDASSE
Sbjct: 420 GKFPFLANSRAKAIDDAEGIVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSE 479
Query: 478 DIARVCHAHPTMSEALKEAAMATHDKPIHI 507
DIARVCHAHPTMSEALKEAAMAT+DKPIHI
Sbjct: 480 DIARVCHAHPTMSEALKEAAMATYDKPIHI 509
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221044|ref|NP_175237.1| dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana] gi|30694221|ref|NP_849782.1| dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana] gi|75264759|sp|Q9M5K3.2|DLDH1_ARATH RecName: Full=Dihydrolipoyl dehydrogenase 1, mitochondrial; AltName: Full=Dihydrolipoamide dehydrogenase 1; AltName: Full=Glycine cleavage system L protein 1; AltName: Full=Pyruvate dehydrogenase complex E3 subunit 1; Short=E3-1; Short=PDC-E3 1; Flags: Precursor gi|12323085|gb|AAG51522.1|AC051631_2 lipoamide dehydrogenase, putative; 44693-46402 [Arabidopsis thaliana] gi|12704696|gb|AAF34795.3|AF228639_1 lipoamide dehydrogenase precursor [Arabidopsis thaliana] gi|332194118|gb|AEE32239.1| dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana] gi|332194119|gb|AEE32240.1| dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/508 (88%), Positives = 485/508 (95%), Gaps = 2/508 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
MAMASLARRKAY L+RNLSNS + ++SFSL+RGFAS+ SDENDVV+IGGGPGGYVAA
Sbjct: 1 MAMASLARRKAYFLTRNLSNSPT-DALRFSFSLSRGFASSGSDENDVVIIGGGPGGYVAA 59
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKA+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEV
Sbjct: 60 IKASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEV 119
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DLPAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNT+VKGK+
Sbjct: 120 DLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKH 179
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
II+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSE 239
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE
Sbjct: 240 VTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGE 299
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
++ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGP
Sbjct: 300 QSILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGP 359
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGK 419
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI
Sbjct: 420 FPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEALKEAAMAT+DKPIHI
Sbjct: 480 ARVCHAHPTMSEALKEAAMATYDKPIHI 507
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099079|ref|XP_002311367.1| precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 [Populus trichocarpa] gi|222851187|gb|EEE88734.1| precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/511 (89%), Positives = 482/511 (94%), Gaps = 4/511 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFA-SASDENDVVVIGGGPGGY 56
MAMAS+ARRKA L+RNLSNSS+ + FK+S+SLT RGFA S S+ENDVVVIGGGPGGY
Sbjct: 1 MAMASIARRKACFLTRNLSNSSSADAFKFSYSLTKFSRGFATSGSEENDVVVIGGGPGGY 60
Query: 57 VAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116
VAAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHM+HEA HSFASHGVKFSS
Sbjct: 61 VAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAQHSFASHGVKFSS 120
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
VEVDLPAMMAQKDKAVS LTRGIEGL KKNKV YVKGYGKFISPSEVSVDTI+G NTVVK
Sbjct: 121 VEVDLPAMMAQKDKAVSTLTRGIEGLLKKNKVNYVKGYGKFISPSEVSVDTIDGANTVVK 180
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
GKNIIIATGSDVKSLPGITIDE++IVSSTGALAL ++PKKLVVIGAGYIGLEMGSVW RL
Sbjct: 181 GKNIIIATGSDVKSLPGITIDEEKIVSSTGALALKKIPKKLVVIGAGYIGLEMGSVWRRL 240
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
GSEVTVVEFA DIVPSMDGE+RKQFQR LEKQKMKFMLKTKVVGVD SGDGVKLTLEPA+
Sbjct: 241 GSEVTVVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAS 300
Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
GG++T LEADVVLVSAGRTPFTAGLGLDKIGVETDK+GRIPVNERF TN+ GVYAIGDVI
Sbjct: 301 GGDQTTLEADVVLVSAGRTPFTAGLGLDKIGVETDKVGRIPVNERFVTNVSGVYAIGDVI 360
Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
PGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGVEY
Sbjct: 361 PGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYC 420
Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASS 476
VGKFP LANSRAKAIDDAEG+VKI+AEKETDKILGVHIMAPNAGELIHEA LA+ YDASS
Sbjct: 421 VGKFPLLANSRAKAIDDAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAALALTYDASS 480
Query: 477 EDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
EDIARVCHAHPTMSEALKEAAMATHDK IHI
Sbjct: 481 EDIARVCHAHPTMSEALKEAAMATHDKAIHI 511
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297852420|ref|XP_002894091.1| F21D18.28 [Arabidopsis lyrata subsp. lyrata] gi|297339933|gb|EFH70350.1| F21D18.28 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/506 (88%), Positives = 483/506 (95%), Gaps = 2/506 (0%)
Query: 3 MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAAIK 61
MASLARRKAY L+RNLSNS + ++SFSL+RGFAS+ SDENDVV+IGGGPGGYVAAIK
Sbjct: 1 MASLARRKAYFLTRNLSNSPT-DALRFSFSLSRGFASSGSDENDVVIIGGGPGGYVAAIK 59
Query: 62 AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121
AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H+FA+HG+K SSVEVDL
Sbjct: 60 AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHAFANHGIKVSSVEVDL 119
Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
PAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNTVVKGK+II
Sbjct: 120 PAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTVVKGKHII 179
Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSEVT
Sbjct: 180 VATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVT 239
Query: 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT 301
VVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE+T
Sbjct: 240 VVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQT 299
Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361
ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF +N+PGVYAIGDVIPGPML
Sbjct: 300 ILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNERFLSNVPGVYAIGDVIPGPML 359
Query: 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP 421
AHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGKFP
Sbjct: 360 AHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGKFP 419
Query: 422 FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIAR 481
F+ANSRAKAID+AEG+VKILA+KETDKILGVHIM+PNAGELIHEAVLAINYDASSEDIAR
Sbjct: 420 FMANSRAKAIDNAEGLVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDIAR 479
Query: 482 VCHAHPTMSEALKEAAMATHDKPIHI 507
VCHAHPTMSEALKEAAMAT+DKPIHI
Sbjct: 480 VCHAHPTMSEALKEAAMATYDKPIHI 505
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118489203|gb|ABK96408.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/511 (89%), Positives = 483/511 (94%), Gaps = 4/511 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLT---RGFA-SASDENDVVVIGGGPGGY 56
MAMAS+ARRKA L+RNLSNSS+ + FK+S+SLT RGFA S S+ENDVVVIGGGPGGY
Sbjct: 1 MAMASIARRKACFLTRNLSNSSSADAFKFSYSLTKFSRGFATSGSEENDVVVIGGGPGGY 60
Query: 57 VAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116
VAAIKAAQLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHM+HEA HSFASHGVKFSS
Sbjct: 61 VAAIKAAQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAQHSFASHGVKFSS 120
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
VEVDLPAMMAQKDKAVS LTRGIEGL KKNKV YVKGYGKFISPSEVSVDTI+G NTVVK
Sbjct: 121 VEVDLPAMMAQKDKAVSTLTRGIEGLLKKNKVNYVKGYGKFISPSEVSVDTIDGANTVVK 180
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
GKNIIIATGSDVKSLPGITIDE++IVSSTGALAL ++PKKLVVIGAGYIGLEMGSVW RL
Sbjct: 181 GKNIIIATGSDVKSLPGITIDEEKIVSSTGALALKKIPKKLVVIGAGYIGLEMGSVWRRL 240
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAA 296
GSEVTVVEFA DIVPSMDGE+RKQFQR LEKQKMKFMLKTKVVGVD SGDGVKLTLEPA+
Sbjct: 241 GSEVTVVEFAPDIVPSMDGEVRKQFQRMLEKQKMKFMLKTKVVGVDTSGDGVKLTLEPAS 300
Query: 297 GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
GG++T LEADVVLVSAGRTPFTAGLGLDKIGVETDK+GRIPV+ERFATN+ GVYAIGDVI
Sbjct: 301 GGDQTTLEADVVLVSAGRTPFTAGLGLDKIGVETDKVGRIPVDERFATNVSGVYAIGDVI 360
Query: 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416
PGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVK LGVEY
Sbjct: 361 PGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKALGVEYC 420
Query: 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASS 476
VGKFP LANSRAKAIDDAEG+VKI+AEKETDKILGVHIMAPNAGELIHEA LA+ YDASS
Sbjct: 421 VGKFPLLANSRAKAIDDAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAALALTYDASS 480
Query: 477 EDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
EDIARVCHAHPTMSEALKEAAMATHDK IHI
Sbjct: 481 EDIARVCHAHPTMSEALKEAAMATHDKAIHI 511
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8778521|gb|AAF79529.1|AC023673_17 F21D18.28 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/506 (88%), Positives = 483/506 (95%), Gaps = 2/506 (0%)
Query: 3 MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAAIK 61
MASLARRKAY L+RNLSNS + ++SFSL+RGFAS+ SDENDVV+IGGGPGGYVAAIK
Sbjct: 1 MASLARRKAYFLTRNLSNSPT-DALRFSFSLSRGFASSGSDENDVVIIGGGPGGYVAAIK 59
Query: 62 AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121
A+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEVDL
Sbjct: 60 ASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEVDL 119
Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
PAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNT+VKGK+II
Sbjct: 120 PAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHII 179
Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSEVT
Sbjct: 180 VATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVT 239
Query: 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT 301
VVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE++
Sbjct: 240 VVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQS 299
Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361
ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGPML
Sbjct: 300 ILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGPML 359
Query: 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP 421
AHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGKFP
Sbjct: 360 AHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGKFP 419
Query: 422 FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIAR 481
F+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIAR
Sbjct: 420 FMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIAR 479
Query: 482 VCHAHPTMSEALKEAAMATHDKPIHI 507
VCHAHPTMSEALKEAAMAT+DKPIHI
Sbjct: 480 VCHAHPTMSEALKEAAMATYDKPIHI 505
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684419|ref|NP_851005.1| dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana] gi|30684428|ref|NP_566570.3| dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana] gi|75264758|sp|Q9M5K2.1|DLDH2_ARATH RecName: Full=Dihydrolipoyl dehydrogenase 2, mitochondrial; AltName: Full=Dihydrolipoamide dehydrogenase 2; AltName: Full=Glycine cleavage system L protein 2; AltName: Full=Pyruvate dehydrogenase complex E3 subunit 2; Short=E3-2; Short=PDC-E3 2; Flags: Precursor gi|6984216|gb|AAF34796.1|AF228640_1 lipoamide dehydrogenase precursor [Arabidopsis thaliana] gi|332642404|gb|AEE75925.1| dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana] gi|332642406|gb|AEE75927.1| dihydrolipoyl dehydrogenase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/508 (87%), Positives = 480/508 (94%), Gaps = 2/508 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
MAMASLARRKAY L+RN+SNS + F++SFSLTRGFAS+ SD+NDVV+IGGGPGGYVAA
Sbjct: 1 MAMASLARRKAYFLTRNISNSPT-DAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGYVAA 59
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H FA+HGVK SSVEV
Sbjct: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKVSSVEV 119
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DLPAM+AQKD AV NLTRG+EGLFKKNKV YVKGYGKF+SPSEVSVDTI+G N VVKGK+
Sbjct: 120 DLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKH 179
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
II+ATGSDVKSLPGITIDEK+IVSSTGAL+L E+PKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSE 239
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFAADIVP+MDGEIRKQFQRSLEKQKMKFMLKTKVVGVD SGDGVKL +EPA GGE
Sbjct: 240 VTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGE 299
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
+T LEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct: 300 QTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAIGDVIPGP 359
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYT+PEVASVGKTEEQ+K+ GV Y VGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVGKTEEQLKKEGVSYNVGK 419
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID AEG+VKILA+KETDKILGVHIM+PNAGELIHEAVLAINYDASSEDI
Sbjct: 420 FPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDI 479
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEA+KEAAMAT+DKPIH+
Sbjct: 480 ARVCHAHPTMSEAIKEAAMATYDKPIHM 507
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312282677|dbj|BAJ34204.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/508 (87%), Positives = 484/508 (95%), Gaps = 2/508 (0%)
Query: 1 MAMASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASA-SDENDVVVIGGGPGGYVAA 59
MAMASLARRKAY L+RN+SNS + ++SFSL+RGFAS+ SDENDVVVIGGGPGGYVAA
Sbjct: 1 MAMASLARRKAYFLTRNVSNSPT-DALRFSFSLSRGFASSGSDENDVVVIGGGPGGYVAA 59
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H+FA+HG+K +SVEV
Sbjct: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHAFANHGIKLTSVEV 119
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DLPAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKF+SP+EVSVDTI+GGNTVVKGK+
Sbjct: 120 DLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFLSPNEVSVDTIDGGNTVVKGKH 179
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
II+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLG+E
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGAE 239
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD SGDGVKLT+EPA GG+
Sbjct: 240 VTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDASGDGVKLTVEPAEGGD 299
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
+T LEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF TN+ GVYAIGDVIPGP
Sbjct: 300 QTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERFLTNVSGVYAIGDVIPGP 359
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKDGVSYRVGK 419
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID+AEG+VKILA+KETDKILGVHIM+PNAGELIHEAVLAINYDASSEDI
Sbjct: 420 FPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDI 479
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEALKEAAMAT+DKPIHI
Sbjct: 480 ARVCHAHPTMSEALKEAAMATYDKPIHI 507
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 507 | ||||||
| TAIR|locus:2023782 | 507 | mtLPD1 "mitochondrial lipoamid | 0.998 | 0.998 | 0.846 | 6.3e-227 | |
| TAIR|locus:2089030 | 507 | mtLPD2 "lipoamide dehydrogenas | 0.998 | 0.998 | 0.838 | 7.4e-224 | |
| UNIPROTKB|P31023 | 501 | LPD "Dihydrolipoyl dehydrogena | 0.986 | 0.998 | 0.834 | 6.7e-223 | |
| UNIPROTKB|Q9SPB1 | 523 | flbr "Dihydrolipoyl dehydrogen | 0.980 | 0.950 | 0.841 | 1.8e-220 | |
| DICTYBASE|DDB_G0291648 | 488 | lpd "glycine cleavage system L | 0.887 | 0.922 | 0.612 | 1.7e-146 | |
| WB|WBGene00010794 | 495 | dld-1 [Caenorhabditis elegans | 0.921 | 0.943 | 0.559 | 6.3e-140 | |
| UNIPROTKB|P09622 | 509 | DLD "Dihydrolipoyl dehydrogena | 0.871 | 0.868 | 0.597 | 1e-139 | |
| UNIPROTKB|F1N206 | 509 | DLD "Dihydrolipoyl dehydrogena | 0.871 | 0.868 | 0.595 | 2.7e-139 | |
| UNIPROTKB|F1SAF0 | 509 | DLD "Dihydrolipoyl dehydrogena | 0.871 | 0.868 | 0.593 | 5.6e-139 | |
| UNIPROTKB|F1PAR0 | 509 | DLD "Dihydrolipoyl dehydrogena | 0.871 | 0.868 | 0.593 | 1.5e-138 |
| TAIR|locus:2023782 mtLPD1 "mitochondrial lipoamide dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2190 (776.0 bits), Expect = 6.3e-227, P = 6.3e-227
Identities = 430/508 (84%), Positives = 465/508 (91%)
Query: 1 MAMASLARRKAYVXXXXXXXXXXXXVFKYSFSLTRGFASA-SDENDXXXXXXXXXXXXAA 59
MAMASLARRKAY + ++SFSL+RGFAS+ SDEND AA
Sbjct: 1 MAMASLARRKAYFLTRNLSNSPTDAL-RFSFSLSRGFASSGSDENDVVIIGGGPGGYVAA 59
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKA+QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEV
Sbjct: 60 IKASQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEV 119
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DLPAM+AQKD AV NLTRGIEGLFKKNKVTYVKGYGKFISP+EVSV+TI+GGNT+VKGK+
Sbjct: 120 DLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKH 179
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
II+ATGSDVKSLPGITIDEK+IVSSTGAL+L+EVPKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSE 239
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFA DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV VD S DGVKLT+EPA GGE
Sbjct: 240 VTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGE 299
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
++ILEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGP
Sbjct: 300 QSILEADVVLVSAGRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGP 359
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGK 419
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI
Sbjct: 420 FPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEALKEAAMAT+DKPIHI
Sbjct: 480 ARVCHAHPTMSEALKEAAMATYDKPIHI 507
|
|
| TAIR|locus:2089030 mtLPD2 "lipoamide dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2161 (765.8 bits), Expect = 7.4e-224, P = 7.4e-224
Identities = 426/508 (83%), Positives = 459/508 (90%)
Query: 1 MAMASLARRKAYVXXXXXXXXXXXXVFKYSFSLTRGFASA-SDENDXXXXXXXXXXXXAA 59
MAMASLARRKAY F++SFSLTRGFAS+ SD+ND AA
Sbjct: 1 MAMASLARRKAYFLTRNISNSPTDA-FRFSFSLTRGFASSGSDDNDVVIIGGGPGGYVAA 59
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA H FA+HGVK SSVEV
Sbjct: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHVFANHGVKVSSVEV 119
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DLPAM+AQKD AV NLTRG+EGLFKKNKV YVKGYGKF+SPSEVSVDTI+G N VVKGK+
Sbjct: 120 DLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKH 179
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
II+ATGSDVKSLPGITIDEK+IVSSTGAL+L E+PKKL+VIGAGYIGLEMGSVW RLGSE
Sbjct: 180 IIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSE 239
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFAADIVP+MDGEIRKQFQRSLEKQKMKFMLKTKVVGVD SGDGVKL +EPA GGE
Sbjct: 240 VTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGE 299
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
+T LEADVVLVSAGRTPFT+GL L+KIGVETDK GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct: 300 QTTLEADVVLVSAGRTPFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAIGDVIPGP 359
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYT+PEVASVGKTEEQ+K+ GV Y VGK
Sbjct: 360 MLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVGKTEEQLKKEGVSYNVGK 419
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID AEG+VKILA+KETDKILGVHIM+PNAGELIHEAVLAINYDASSEDI
Sbjct: 420 FPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDI 479
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEA+KEAAMAT+DKPIH+
Sbjct: 480 ARVCHAHPTMSEAIKEAAMATYDKPIHM 507
|
|
| UNIPROTKB|P31023 LPD "Dihydrolipoyl dehydrogenase, mitochondrial" [Pisum sativum (taxid:3888)] | Back alignment and assigned GO terms |
|---|
Score = 2152 (762.6 bits), Expect = 6.7e-223, P = 6.7e-223
Identities = 424/508 (83%), Positives = 459/508 (90%)
Query: 1 MAMASLARRKAYVXXXXXXXXXXXXVFKYSFSL-TRGFASASDENDXXXXXXXXXXXXAA 59
MAMA+LARRK Y +YSFSL +R FAS SDEND AA
Sbjct: 1 MAMANLARRKGY-------SLLSSETLRYSFSLRSRAFASGSDENDVVIIGGGPGGYVAA 53
Query: 60 IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119
IKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HGVK S+VE+
Sbjct: 54 IKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEI 113
Query: 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKN 179
DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF+SPSE+SVDTIEG NTVVKGK+
Sbjct: 114 DLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKH 173
Query: 180 IIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE 239
IIIATGSDVKSLPG+TIDEK+IVSSTGALAL+E+PKKLVVIGAGYIGLEMGSVW R+GSE
Sbjct: 174 IIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE 233
Query: 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE 299
VTVVEFA++IVP+MD EIRKQFQRSLEKQ MKF LKTKVVGVD SGDGVKLT+EP+AGGE
Sbjct: 234 VTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGE 293
Query: 300 KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
+TI+EADVVLVSAGRTPFT+GL LDKIGVETDK+GRI VNERF+TN+ GVYAIGDVIPGP
Sbjct: 294 QTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 353
Query: 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419
MLAHKAEEDGVACVE+LAGK GHVDYDKVPGVVYT+PEVASVGKTEEQVKE GVEYRVGK
Sbjct: 354 MLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGK 413
Query: 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDI 479
FPF+ANSRAKAID+AEG+VKI+AEKETDKILGVHIMAPNAGELIHEA +A+ YDASSEDI
Sbjct: 414 FPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDI 473
Query: 480 ARVCHAHPTMSEALKEAAMATHDKPIHI 507
ARVCHAHPTMSEA+KEAAMAT+DKPIHI
Sbjct: 474 ARVCHAHPTMSEAIKEAAMATYDKPIHI 501
|
|
| UNIPROTKB|Q9SPB1 flbr "Dihydrolipoyl dehydrogenase" [Vigna unguiculata (taxid:3917)] | Back alignment and assigned GO terms |
|---|
Score = 2129 (754.5 bits), Expect = 1.8e-220, P = 1.8e-220
Identities = 424/504 (84%), Positives = 449/504 (89%)
Query: 1 MAMASLARRKAYVXXXXXXXXXXXXVFKYSFSLTRGFASASDENDXXXXXXXXXXXXAAI 60
MAMASLARRKAY VF S RGFAS SDEND AAI
Sbjct: 1 MAMASLARRKAYAVVSSSRSS----VFLTSL---RGFASGSDENDVVVIGGGPGGYVAAI 53
Query: 61 KAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120
KA+QLGLKTTCIEKRG LGGTCLNVGCIPSKALLHSSHMYHEA HSFA+HG+K SSVEVD
Sbjct: 54 KASQLGLKTTCIEKRGTLGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGIKLSSVEVD 113
Query: 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNI 180
L MMAQKDKAVSNLT+GIEGLFKKNKV YVKGYGKF+SPSEVSVDTI+GGNTVVKGK+I
Sbjct: 114 LAGMMAQKDKAVSNLTKGIEGLFKKNKVNYVKGYGKFVSPSEVSVDTIDGGNTVVKGKHI 173
Query: 181 IIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEV 240
IIATGSDVKSLPG+TIDEK+IVSSTGALAL E+PKKLVVIGAGYIGLEMGSVW RLGSEV
Sbjct: 174 IIATGSDVKSLPGVTIDEKKIVSSTGALALTEIPKKLVVIGAGYIGLEMGSVWGRLGSEV 233
Query: 241 TVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK 300
TVVEFA+DIVP+MD E+RKQFQRSLEKQ MKF LKTKVVGVD SGDGVKLTLEPAAGG++
Sbjct: 234 TVVEFASDIVPTMDAEVRKQFQRSLEKQGMKFQLKTKVVGVDTSGDGVKLTLEPAAGGDQ 293
Query: 301 TILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360
TILE DVVLVSAGRTPFTAGLGLDKIGVETDK+ RI VNERF TN+ GVYAIGDVIPGPM
Sbjct: 294 TILETDVVLVSAGRTPFTAGLGLDKIGVETDKIRRILVNERFTTNVSGVYAIGDVIPGPM 353
Query: 361 LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF 420
LAHKAEEDGVACVEF+AGK GHVDYDKVPGVVYT PEVA VGKTEEQVK LGVEYRVGKF
Sbjct: 354 LAHKAEEDGVACVEFIAGKVGHVDYDKVPGVVYTTPEVAYVGKTEEQVKALGVEYRVGKF 413
Query: 421 PFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIA 480
PF+ANSRAKAID+AEG+VKILAEKETDKILGVHIMAPNAGELIHEA +A+ YDASSEDIA
Sbjct: 414 PFMANSRAKAIDNAEGLVKILAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIA 473
Query: 481 RVCHAHPTMSEALKEAAMATHDKP 504
RVCHAHPTMSEA+KEAAMAT+DKP
Sbjct: 474 RVCHAHPTMSEAVKEAAMATYDKP 497
|
|
| DICTYBASE|DDB_G0291648 lpd "glycine cleavage system L-protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1431 (508.8 bits), Expect = 1.7e-146, P = 1.7e-146
Identities = 277/452 (61%), Positives = 340/452 (75%)
Query: 58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117
A IKA QLG+K T +EKRG LGGTCLNVGCIPSKALL++SH+Y EA + +GVK S V
Sbjct: 37 AGIKAGQLGMKVTVVEKRGKLGGTCLNVGCIPSKALLNASHLYEEATTKMSKYGVKCSGV 96
Query: 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKG 177
E+DL AMM KDK+VS LT GIEGLFKKNKV Y KG+GK P+ V V +G ++
Sbjct: 97 ELDLGAMMQYKDKSVSGLTSGIEGLFKKNKVKYDKGFGKITGPNTVEVTLNDGSVKTIET 156
Query: 178 KNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG 237
KNI+IATGS+V SLP + IDE+ I+SSTGALAL VPKKL+VIG G IGLE+GSVW+RLG
Sbjct: 157 KNIVIATGSEVTSLPNVNIDEESIISSTGALALKSVPKKLIVIGGGVIGLELGSVWSRLG 216
Query: 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPA- 295
SE TVVEF I DGE+ K+FQ+SLEKQ MKF L+TKV V DG V +T+E
Sbjct: 217 SETTVVEFTNRIAAGADGEVAKKFQKSLEKQHMKFHLETKVTSVVKKSDGKVTVTVEQVG 276
Query: 296 AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
AGG LEAD VLVS GR P T+GLGL+ +G+ TDK GR+ V + F T +P ++AIGD
Sbjct: 277 AGGFTGTLEADAVLVSVGRRPNTSGLGLESVGIPTDKAGRVEVGDHFNTKVPSIFAIGDA 336
Query: 356 IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEY 415
I GPMLAHKAEE+G+A +E + GHV+Y +P ++YTHPEVA VGKTEE++++ G++Y
Sbjct: 337 IRGPMLAHKAEEEGIAIIEQIHNGGGHVNYGAIPSIIYTHPEVAWVGKTEEELQKEGIQY 396
Query: 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDAS 475
+G+FPF+ANSRAK DD EG VK LA K++D++LG HIM NAGELI E VLA+ Y AS
Sbjct: 397 NIGRFPFVANSRAKTNDDVEGFVKFLAAKDSDRVLGAHIMGTNAGELIGECVLAMEYGAS 456
Query: 476 SEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
EDIAR CH HPT+SEA+KEAAM +DKPIH+
Sbjct: 457 CEDIARTCHGHPTLSEAVKEAAMDAYDKPIHM 488
|
|
| WB|WBGene00010794 dld-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
Identities = 263/470 (55%), Positives = 340/470 (72%)
Query: 33 LTRGFASASDENDXXXXXXXXXXXXAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
L R +++ D D AAIKAAQLG+KT C+EK LGGTCLNVGCIPSKA
Sbjct: 20 LARNYSNTQDA-DLVVIGGGPGGYVAAIKAAQLGMKTVCVEKNATLGGTCLNVGCIPSKA 78
Query: 93 LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
LL++SH H A H FA+ G+ ++ ++LP MM K +V LT GI+ LFK NKV +V+
Sbjct: 79 LLNNSHYLHMAQHDFAARGIDCTA-SLNLPKMMEAKSNSVKQLTGGIKQLFKANKVGHVE 137
Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
G+ + P+ V +G + +NI+IA+GS+V PGITIDEK+IVSSTGAL+L +
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILIASGSEVTPFPGITIDEKQIVSSTGALSLGQ 197
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMK 271
VPKK+VVIGAG IGLE+GSVW RLG+EVT VEF + +DGE+ K FQRSL KQ K
Sbjct: 198 VPKKMVVIGAGVIGLELGSVWQRLGAEVTAVEFLGHVGGMGIDGEVSKNFQRSLTKQGFK 257
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
F+L TKV+G +G + + +E A G+K LE D +LVS GR P+T GLGL + ++ D
Sbjct: 258 FLLNTKVMGASQNGSTITVEVEGAKDGKKQTLECDTLLVSVGRRPYTEGLGLSNVQIDLD 317
Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
GR+PVNERF T +P ++AIGDVI GPMLAHKAE++G+ CVE +AG H+DY+ VP V
Sbjct: 318 NRGRVPVNERFQTKVPSIFAIGDVIEGPMLAHKAEDEGILCVEGIAGGPVHIDYNCVPSV 377
Query: 392 VYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILG 451
VYTHPEVA VGK EEQ+K+ GV Y++GKFPF+ANSRAK +D EG VK+LA+K+TD++LG
Sbjct: 378 VYTHPEVAWVGKAEEQLKQEGVAYKIGKFPFVANSRAKTNNDQEGFVKVLADKQTDRMLG 437
Query: 452 VHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501
VHI+ PNAGE+I EA LA+ Y AS+ED+ARVCH HPT+SEA +EA +A +
Sbjct: 438 VHIIGPNAGEMIAEATLAMEYGASAEDVARVCHPHPTLSEAFREANLAAY 487
|
|
| UNIPROTKB|P09622 DLD "Dihydrolipoyl dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
Identities = 266/445 (59%), Positives = 331/445 (74%)
Query: 58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
AAIKAAQLG KT CIEK LGGTCLNVGCIPSKALL++SH YH A FAS G++ S
Sbjct: 56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE 115
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
V ++L MM QK AV LT GI LFK+NKV +V GYGK ++V+ +GG V+
Sbjct: 116 VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVID 175
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
KNI+IATGS+V PGITIDE IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct: 176 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 235
Query: 237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
G++VT VEF + +D EI K FQR L+KQ KF L TKV G DG + +++E
Sbjct: 236 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA 295
Query: 295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
A+GG+ ++ DV+LV GR PFT LGL+++G+E D GRIPVN RF T IP +YAIGD
Sbjct: 296 ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 355
Query: 355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
V+ GPMLAHKAE++G+ CVE +AG H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct: 356 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 415
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDA 474
Y+VGKFPF ANSRAK D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y A
Sbjct: 416 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGA 475
Query: 475 SSEDIARVCHAHPTMSEALKEAAMA 499
S EDIARVCHAHPT+SEA +EA +A
Sbjct: 476 SCEDIARVCHAHPTLSEAFREANLA 500
|
|
| UNIPROTKB|F1N206 DLD "Dihydrolipoyl dehydrogenase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1363 (484.9 bits), Expect = 2.7e-139, P = 2.7e-139
Identities = 265/445 (59%), Positives = 330/445 (74%)
Query: 58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
AAIKAAQLG KT C+EK LGGTCLNVGCIPSKALL++SH YH A FAS G++ S
Sbjct: 56 AAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHFYHLAHGKDFASRGIEMSE 115
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
V ++L MM QK AV LT GI LFK+NKV +V GYGK ++V+ +G V+
Sbjct: 116 VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGSTQVID 175
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
KNI+IATGS+V PGITIDE IVSSTGAL+L +VP+KLVVIGAG IG+E+GSVW RL
Sbjct: 176 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRL 235
Query: 237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
G++VT VEF + +D EI K FQR L+KQ KF L TKV G DG + +++E
Sbjct: 236 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEA 295
Query: 295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
A+GG+ ++ DV+LV GR PFT LGL+++G+E D GRIPVN RF T IP +YAIGD
Sbjct: 296 ASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDTRGRIPVNTRFQTKIPNIYAIGD 355
Query: 355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
V+ GPMLAHKAE++G+ CVE +AG H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct: 356 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 415
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDA 474
Y+VGKFPF ANSRAK D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y A
Sbjct: 416 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGA 475
Query: 475 SSEDIARVCHAHPTMSEALKEAAMA 499
S EDIARVCHAHPT+SEA +EA +A
Sbjct: 476 SCEDIARVCHAHPTLSEAFREANLA 500
|
|
| UNIPROTKB|F1SAF0 DLD "Dihydrolipoyl dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
Identities = 264/445 (59%), Positives = 330/445 (74%)
Query: 58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
AAIKAAQLG KT CIEK LGGTCLNVGCIPSKALL++SH YH A FAS G++ S
Sbjct: 56 AAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE 115
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
V ++L MM QK AV LT GI LFK+NKV V GYGK ++V+ +G V+
Sbjct: 116 VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVIN 175
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
KNI+IATGS+V PGITIDE +VSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct: 176 TKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 235
Query: 237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
G++VT VEF + +D E+ K FQR L+KQ KF L TKV+G DG + +++E
Sbjct: 236 GADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFKLNTKVIGATKKSDGNIDVSIEA 295
Query: 295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
A+GG+ ++ DV+LV GR PFT LGL+++G+E D GRIPVN RF T IP +YAIGD
Sbjct: 296 ASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 355
Query: 355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
V+ GPMLAHKAE++G+ CVE +AG H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct: 356 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 415
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDA 474
Y+VGKFPF ANSRAK D +G+VKIL +K TD++LG HI+ P AGE+I+EA LA+ Y A
Sbjct: 416 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHIIGPGAGEMINEAALALEYGA 475
Query: 475 SSEDIARVCHAHPTMSEALKEAAMA 499
S EDIARVCHAHPT+SEA +EA +A
Sbjct: 476 SCEDIARVCHAHPTLSEAFREANLA 500
|
|
| UNIPROTKB|F1PAR0 DLD "Dihydrolipoyl dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1356 (482.4 bits), Expect = 1.5e-138, P = 1.5e-138
Identities = 264/445 (59%), Positives = 329/445 (73%)
Query: 58 AAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSS 116
AAIKAAQLG KT C+EK LGGTCLNVGCIPSKALL++SH YH A FAS G++ S
Sbjct: 56 AAIKAAQLGFKTVCVEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE 115
Query: 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVK 176
V ++L MM QK AV LT GI LFK+NKV +V GYGK ++V+ +G V+
Sbjct: 116 VRLNLEKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTAKKADGSTQVID 175
Query: 177 GKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL 236
KNI+IATGS+V PGITIDE IVSSTGAL+L +VP+K+VVIGAG IG+E+GSVW RL
Sbjct: 176 TKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRL 235
Query: 237 GSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEP 294
G++VT VEF + +D EI K FQR L+KQ KF L TKV G DG + + +E
Sbjct: 236 GADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVFIEG 295
Query: 295 AAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
A+GG+ ++ DV+LV GR PFT LGL+++G+E D GRIPVN RF T IP +YAIGD
Sbjct: 296 ASGGKAEVITCDVLLVCIGRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGD 355
Query: 355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE 414
V+ GPMLAHKAE++G+ CVE +AG H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E
Sbjct: 356 VVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIE 415
Query: 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDA 474
Y+VGKFPF ANSRAK D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y A
Sbjct: 416 YKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGA 475
Query: 475 SSEDIARVCHAHPTMSEALKEAAMA 499
S EDIARVCHAHPT+SEA +EA +A
Sbjct: 476 SCEDIARVCHAHPTLSEAFREANLA 500
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q6GHY9 | DLDH_STAAR | 1, ., 8, ., 1, ., 4 | 0.4482 | 0.9033 | 0.9786 | yes | no |
| Q9HN74 | DLDH_HALSA | 1, ., 8, ., 1, ., 4 | 0.4039 | 0.8836 | 0.9451 | yes | no |
| P52992 | DLDH_CUPNH | 1, ., 8, ., 1, ., 4 | 0.5010 | 0.9171 | 0.9810 | yes | no |
| O18480 | DLDH_MANSE | 1, ., 8, ., 1, ., 4 | 0.5541 | 0.9309 | 0.9496 | N/A | no |
| P0A9P3 | DLDH_SHIFL | 1, ., 8, ., 1, ., 4 | 0.4329 | 0.8915 | 0.9535 | yes | no |
| Q9KPF6 | DLDH_VIBCH | 1, ., 8, ., 1, ., 4 | 0.4329 | 0.8777 | 0.9368 | yes | no |
| O50286 | DLDH_VIBPA | 1, ., 8, ., 1, ., 4 | 0.4461 | 0.8777 | 0.9368 | yes | no |
| O00087 | DLDH_SCHPO | 1, ., 8, ., 1, ., 4 | 0.5741 | 0.9270 | 0.9197 | yes | no |
| P09623 | DLDH_PIG | 1, ., 8, ., 1, ., 4 | 0.5897 | 0.9171 | 0.9135 | yes | no |
| P09622 | DLDH_HUMAN | 1, ., 8, ., 1, ., 4 | 0.57 | 0.9802 | 0.9764 | yes | no |
| P99084 | DLDH_STAAN | 1, ., 8, ., 1, ., 4 | 0.4482 | 0.9033 | 0.9786 | yes | no |
| P09624 | DLDH_YEAST | 1, ., 8, ., 1, ., 4 | 0.5582 | 0.9428 | 0.9579 | yes | no |
| Q5UWH2 | DLDH3_HALMA | 1, ., 8, ., 1, ., 4 | 0.4230 | 0.9072 | 0.9643 | yes | no |
| P0A0E6 | DLDH_STAAM | 1, ., 8, ., 1, ., 4 | 0.4482 | 0.9033 | 0.9786 | yes | no |
| P0A0E7 | DLDH_STAAW | 1, ., 8, ., 1, ., 4 | 0.4482 | 0.9033 | 0.9786 | yes | no |
| Q9PJI3 | DLDH_CHLMU | 1, ., 8, ., 1, ., 4 | 0.4086 | 0.8934 | 0.9741 | yes | no |
| Q9Z773 | DLDH_CHLPN | 1, ., 8, ., 1, ., 4 | 0.3905 | 0.8974 | 0.9869 | yes | no |
| Q54EW8 | DLDH_DICDI | 1, ., 8, ., 1, ., 4 | 0.6128 | 0.8875 | 0.9221 | yes | no |
| O84561 | DLDH_CHLTR | 1, ., 8, ., 1, ., 4 | 0.4120 | 0.8915 | 0.9720 | yes | no |
| P0A0E8 | DLDH_STAAU | 1, ., 8, ., 1, ., 4 | 0.4482 | 0.9033 | 0.9786 | yes | no |
| O08749 | DLDH_MOUSE | 1, ., 8, ., 1, ., 4 | 0.5786 | 0.9329 | 0.9292 | yes | no |
| P49819 | DLDH_CANFA | 1, ., 8, ., 1, ., 4 | 0.5897 | 0.9171 | 0.9135 | yes | no |
| Q8CIZ7 | DLDH_CRIGR | 1, ., 8, ., 1, ., 4 | 0.5618 | 0.9960 | 0.9921 | yes | no |
| Q9M5K3 | DLDH1_ARATH | 1, ., 8, ., 1, ., 4 | 0.8818 | 0.9980 | 0.9980 | yes | no |
| Q9M5K2 | DLDH2_ARATH | 1, ., 8, ., 1, ., 4 | 0.8720 | 0.9980 | 0.9980 | no | no |
| O17953 | DLDH_CAEEL | 1, ., 8, ., 1, ., 4 | 0.5829 | 0.9211 | 0.9434 | yes | no |
| Q60HG3 | DLDH_MACFA | 1, ., 8, ., 1, ., 4 | 0.57 | 0.9802 | 0.9764 | N/A | no |
| Q04933 | DLDH_TRYBB | 1, ., 8, ., 1, ., 4 | 0.5748 | 0.8875 | 0.9394 | N/A | no |
| P43784 | DLDH_HAEIN | 1, ., 8, ., 1, ., 4 | 0.4351 | 0.8895 | 0.9435 | yes | no |
| P31046 | DLDH3_PSEPU | 1, ., 8, ., 1, ., 4 | 0.5538 | 0.8915 | 0.9699 | yes | no |
| Q6P6R2 | DLDH_RAT | 1, ., 8, ., 1, ., 4 | 0.5849 | 0.9329 | 0.9292 | yes | no |
| P18925 | DLDH_AZOVI | 1, ., 8, ., 1, ., 4 | 0.4799 | 0.9171 | 0.9748 | yes | no |
| P31023 | DLDH_PEA | 1, ., 8, ., 1, ., 4 | 0.8622 | 0.9861 | 0.9980 | N/A | no |
| P90597 | DLDH_TRYCR | 1, ., 8, ., 1, ., 4 | 0.5805 | 0.8856 | 0.9412 | N/A | no |
| Q9HUY1 | DLDH3_PSEAE | 1, ., 8, ., 1, ., 4 | 0.5140 | 0.9072 | 0.9850 | yes | no |
| Q6GAB8 | DLDH_STAAS | 1, ., 8, ., 1, ., 4 | 0.4482 | 0.9033 | 0.9786 | yes | no |
| Q5R4B1 | DLDH_PONAB | 1, ., 8, ., 1, ., 4 | 0.564 | 0.9802 | 0.9764 | yes | no |
| Q811C4 | DLDH_MESAU | 1, ., 8, ., 1, ., 4 | 0.5917 | 0.9072 | 0.9603 | N/A | no |
| Q5HGY8 | DLDH_STAAC | 1, ., 8, ., 1, ., 4 | 0.4482 | 0.9033 | 0.9786 | yes | no |
| P21880 | DLDH1_BACSU | 1, ., 8, ., 1, ., 4 | 0.4399 | 0.9053 | 0.9765 | yes | no |
| P95596 | DLDH_RHOCA | 1, ., 8, ., 1, ., 4 | 0.5518 | 0.8599 | 0.9603 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| mtLPD1 | mtLPD1 (mitochondrial lipoamide dehydrogenase 1); ATP binding / dihydrolipoyl dehydrogenase; Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light. ; Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components- pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (507 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GDCST | aminomethyltransferase, putative; aminomethyltransferase, putative; FUNCTIONS IN- aminomethyltr [...] (408 aa) | • | • | • | • | 0.997 | |||||
| AT4G26910 | 2-oxoacid dehydrogenase family protein; 2-oxoacid dehydrogenase family protein; FUNCTIONS IN- d [...] (464 aa) | • | • | • | • | • | • | • | 0.992 | ||
| AT5G55070 | 2-oxoacid dehydrogenase family protein; 2-oxoacid dehydrogenase family protein; FUNCTIONS IN- d [...] (464 aa) | • | • | • | • | • | • | • | 0.992 | ||
| AT3G13930 | dihydrolipoamide S-acetyltransferase, putative; dihydrolipoamide S-acetyltransferase, putative; [...] (539 aa) | • | • | • | • | • | • | • | 0.991 | ||
| AT1G54220 | dihydrolipoamide S-acetyltransferase, putative; dihydrolipoamide S-acetyltransferase, putative; [...] (539 aa) | • | • | • | • | • | • | • | 0.990 | ||
| AtGLDP2 | AtGLDP2 (Arabidopsis thaliana glycine decarboxylase P-protein 2); ATP binding / glycine dehydro [...] (1044 aa) | • | • | • | • | 0.987 | |||||
| AtGLDP1 | AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogen [...] (1037 aa) | • | • | • | • | 0.987 | |||||
| AT5G65750 | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / al [...] (1025 aa) | • | • | • | • | • | 0.985 | ||||
| AT3G55410 | 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / al [...] (1017 aa) | • | • | • | • | • | 0.984 | ||||
| BCE2 | BCE2; acetyltransferase/ alpha-ketoacid dehydrogenase/ dihydrolipoamide branched chain acyltran [...] (483 aa) | • | • | • | • | • | • | • | 0.984 | ||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 507 | |||
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 0.0 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 0.0 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 0.0 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 0.0 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 0.0 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 0.0 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 0.0 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 1e-170 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 1e-132 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 1e-122 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 1e-122 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 1e-117 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 1e-110 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 1e-84 | |
| PTZ00153 | 659 | PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi | 7e-79 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 7e-76 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 1e-75 | |
| PRK13748 | 561 | PRK13748, PRK13748, putative mercuric reductase; P | 7e-71 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 2e-70 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 2e-70 | |
| PRK14727 | 479 | PRK14727, PRK14727, putative mercuric reductase; P | 2e-69 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 6e-68 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 1e-63 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 2e-62 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 8e-62 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 3e-59 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 8e-58 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 2e-54 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 8e-51 | |
| pfam02852 | 110 | pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu | 2e-48 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 1e-44 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 1e-43 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 5e-41 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 8e-24 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 1e-21 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 8e-21 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 1e-20 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 6e-19 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 2e-15 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 3e-15 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 2e-14 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 3e-14 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 6e-14 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 3e-13 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 4e-13 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 4e-13 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 9e-13 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 2e-12 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 1e-11 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 2e-11 | |
| TIGR03143 | 555 | TIGR03143, AhpF_homolog, putative alkyl hydroperox | 3e-10 | |
| pfam12831 | 415 | pfam12831, FAD_oxidored, FAD dependent oxidoreduct | 3e-10 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 9e-10 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 3e-09 | |
| pfam01134 | 391 | pfam01134, GIDA, Glucose inhibited division protei | 4e-09 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 3e-08 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 5e-08 | |
| PRK15317 | 517 | PRK15317, PRK15317, alkyl hydroperoxide reductase | 2e-07 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 3e-07 | |
| TIGR01318 | 467 | TIGR01318, gltD_gamma_fam, glutamate synthase smal | 4e-07 | |
| COG1233 | 487 | COG1233, COG1233, Phytoene dehydrogenase and relat | 5e-07 | |
| pfam00890 | 401 | pfam00890, FAD_binding_2, FAD binding domain | 8e-07 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 3e-06 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 5e-06 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 8e-06 | |
| COG1053 | 562 | COG1053, SdhA, Succinate dehydrogenase/fumarate re | 8e-06 | |
| COG0644 | 396 | COG0644, FixC, Dehydrogenases (flavoproteins) [Ene | 1e-05 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 1e-05 | |
| pfam03486 | 405 | pfam03486, HI0933_like, HI0933-like protein | 1e-05 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 2e-05 | |
| PRK04176 | 257 | PRK04176, PRK04176, ribulose-1,5-biphosphate synth | 2e-05 | |
| PRK07843 | 557 | PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrog | 7e-05 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 7e-05 | |
| PRK12775 | 1006 | PRK12775, PRK12775, putative trifunctional 2-polyp | 8e-05 | |
| TIGR00275 | 400 | TIGR00275, TIGR00275, flavoprotein, HI0933 family | 9e-05 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 1e-04 | |
| PRK12843 | 578 | PRK12843, PRK12843, putative FAD-binding dehydroge | 1e-04 | |
| COG1148 | 622 | COG1148, HdrA, Heterodisulfide reductase, subunit | 1e-04 | |
| pfam13450 | 66 | pfam13450, NAD_binding_8, NAD(P)-binding Rossmann- | 2e-04 | |
| PRK12842 | 574 | PRK12842, PRK12842, putative succinate dehydrogena | 2e-04 | |
| PRK06134 | 581 | PRK06134, PRK06134, putative FAD-binding dehydroge | 2e-04 | |
| COG2081 | 408 | COG2081, COG2081, Predicted flavoproteins [General | 3e-04 | |
| COG1635 | 262 | COG1635, THI4, Ribulose 1,5-bisphosphate synthetas | 3e-04 | |
| PRK12844 | 557 | PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrog | 4e-04 | |
| PRK12835 | 584 | PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrog | 5e-04 | |
| TIGR03997 | 645 | TIGR03997, mycofact_OYE_2, mycofactocin system Fad | 6e-04 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 7e-04 | |
| TIGR02734 | 502 | TIGR02734, crtI_fam, phytoene desaturase | 0.001 | |
| PRK07121 | 492 | PRK07121, PRK07121, hypothetical protein; Validate | 0.001 | |
| PRK05329 | 422 | PRK05329, PRK05329, anaerobic glycerol-3-phosphate | 0.001 | |
| PRK12839 | 572 | PRK12839, PRK12839, hypothetical protein; Provisio | 0.001 | |
| PRK15317 | 517 | PRK15317, PRK15317, alkyl hydroperoxide reductase | 0.002 | |
| PRK12809 | 639 | PRK12809, PRK12809, putative oxidoreductase Fe-S b | 0.002 | |
| TIGR00031 | 377 | TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mu | 0.002 | |
| COG0654 | 387 | COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox | 0.003 | |
| pfam01946 | 229 | pfam01946, Thi4, Thi4 family | 0.004 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 629 bits (1624), Expect = 0.0
Identities = 254/475 (53%), Positives = 335/475 (70%), Gaps = 9/475 (1%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALL 94
S + DVVVIG GPGGYVAAI+AAQLGLK CIE + ALGGTCLNVGCIPSKALL
Sbjct: 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALL 61
Query: 95 HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
SS + A H FA HG+ V++D+ M+A+KDK V +T GIEGLFKKNK+T +KG
Sbjct: 62 ASSEEFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR 121
Query: 155 GKFISPSEVS--VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
G F+ ++ + TV+ K++IIATGS+ + LPG+ D K I+ +TGAL E
Sbjct: 122 GSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALNFTE 181
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
VPKKL VIGAG IGLE+GSVW RLG+EVT++E + + D ++ K+ ++ KQ +
Sbjct: 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDI 241
Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
L K+ + G GV + A G +T LE D ++VS GR P T GLGL+ +G++ D+
Sbjct: 242 HLGVKIGEIKTGGKGVSVAYTDADGEAQT-LEVDKLIVSIGRVPNTDGLGLEAVGLKLDE 300
Query: 333 MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV 392
G IPV++ TN+P VYAIGDV+ GPMLAHKAEE+GVA E +AG+ GH+DY+ +P V+
Sbjct: 301 RGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI 360
Query: 393 YTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGV 452
YT PE+A VGKTE+Q+K GVEY+ GKFPF+AN RA A+ + +G VKI+A+ +TD+ILGV
Sbjct: 361 YTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGV 420
Query: 453 HIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
H++ PNA ELI EAV+A+ + ASSEDIAR+CHAHPT+SE EAA+A +P+H
Sbjct: 421 HVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDKRPLHF 475
|
Length = 475 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 592 bits (1528), Expect = 0.0
Identities = 249/464 (53%), Positives = 321/464 (69%), Gaps = 8/464 (1%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DV+VIGGGPGGYVAAI+AAQLGLK +EK LGGTCLNVGCIP+KALLHS+ +Y E
Sbjct: 3 DVIVIGGGPGGYVAAIRAAQLGLKVALVEKE-YLGGTCLNVGCIPTKALLHSAEVYDEIK 61
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
H G++ +V VD M +K+K V L G+ GL KKNKVT +KG KF+ P VS
Sbjct: 62 H-AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDPGTVS 120
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPG-ITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
V E G ++ KNIIIATGS +SLPG D K +++STGAL L EVP+ LV+IG G
Sbjct: 121 VTG-ENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPESLVIIGGG 179
Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
IG+E S++A LGS+VTV+E I+P D E+ K Q++L+K+ +K + TKV V+
Sbjct: 180 VIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVKILTNTKVTAVEK 239
Query: 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
+ D V + GGE L + VLV+ GR P T GLGL+K+GVE D+ GRI V+E
Sbjct: 240 NDDQVTYENK---GGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMR 296
Query: 344 TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVG 402
TN+PG+YAIGDVI GPMLAH A +G+ E +AGK H+DYD VP V+YT PEVASVG
Sbjct: 297 TNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAHIDYDAVPSVIYTDPEVASVG 356
Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
TEEQ KE G + ++GKFPF AN +A A+ + +G VKI+A+K+T +ILG HI+ P+A EL
Sbjct: 357 LTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATEL 416
Query: 463 IHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506
I EA LA+ + + E++AR H HPT+SEA+KEAA+A KPIH
Sbjct: 417 ISEAALAMELEGTVEELARTIHPHPTLSEAIKEAALAALGKPIH 460
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 584 bits (1507), Expect = 0.0
Identities = 237/468 (50%), Positives = 313/468 (66%), Gaps = 6/468 (1%)
Query: 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 99
+ E DV+VIG GPGGYVAAI+AAQLGLK +EK LGGTCLN GCIPSKALLH++
Sbjct: 1 FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK-EKLGGTCLNRGCIPSKALLHAAER 59
Query: 100 YHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS 159
EA HS G+K +V +D + K+ V+ LT G+EGL KKNKV ++G K +
Sbjct: 60 ADEARHS-EDFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVD 118
Query: 160 PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVV 219
P+ V V T E G KNII+ATGS + LPGI ID + I +S AL L+EVPK LVV
Sbjct: 119 PNTVRVMT-EDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTSDEALNLDEVPKSLVV 177
Query: 220 IGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279
IG GYIG+E S +A LG+EVT+VE I+P D EI K +R+L+K+ +K K
Sbjct: 178 IGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAK 237
Query: 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339
V+ + DGV +TLE GG++ LEAD VLV+ GR P T LGL+++GV+TD+ G I V+
Sbjct: 238 KVEQTDDGVTVTLE--DGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDR-GFIEVD 294
Query: 340 ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVA 399
E+ TN+P +YAIGD++ GPMLAHKA +G+ E +AG +DY +P V YTHPEVA
Sbjct: 295 EQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVA 354
Query: 400 SVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
SVG TE + KE G + +V KFPF N +A A+ + +G VK++ +K+ ++LG H++ A
Sbjct: 355 SVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARA 414
Query: 460 GELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
ELI EA LAIN++A+ ED+A H HPT+SEAL EAA+A KP+H
Sbjct: 415 SELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALAAAGKPLHA 462
|
Length = 462 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 583 bits (1504), Expect = 0.0
Identities = 239/454 (52%), Positives = 304/454 (66%), Gaps = 6/454 (1%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DVVVIG GP GYVAAI+AAQLGLK +EK LGGTCLNVGCIPSKALLH++ + EA
Sbjct: 6 DVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEAR 65
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
H+ +G+ ++D ++A+KDK V LT G+EGL KKN V ++G +F+ P V
Sbjct: 66 HAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVE 125
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
V + NIIIATGS + PG ID RI+ S+ AL L E+PK LV++G GY
Sbjct: 126 VTG--EDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGY 183
Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
IGLE SV+A LGS+VTVVE I+P D EI K+ + LEK +K +L TKV V+
Sbjct: 184 IGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKK 243
Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
DGV +TLE GE +EAD VLV+ GR P T GLGL+ GVE D G I V+++ T
Sbjct: 244 DDGVLVTLE---DGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT 300
Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGK 403
N+PG+YAIGDVI GPMLAH A +G E +AG +DY +P VV+T PE+ASVG
Sbjct: 301 NVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGL 360
Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
TEE+ KE G++Y+VGKFPF AN RA + + +G VK++ +KET +ILG HI+ P A ELI
Sbjct: 361 TEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELI 420
Query: 464 HEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497
+E LAI A++ED+A HAHPT+SEALKEAA
Sbjct: 421 NEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454
|
Length = 454 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 579 bits (1495), Expect = 0.0
Identities = 260/464 (56%), Positives = 333/464 (71%), Gaps = 3/464 (0%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DVV+IGGGPGGY AAI+A QLGLK C+E R LGGTCLNVGC+PSKALLH+S +Y A
Sbjct: 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAAS 64
Query: 105 -HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
FA G++ ++L MM QKD++V LT+G+E LF+KNKV ++KG+G+ +V
Sbjct: 65 GGEFAHLGIEVKP-TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKV 123
Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
V +G T ++ K+I+IATGS+ LPG+TID +RI+ STGAL+L EVPK LVVIGAG
Sbjct: 124 VVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAG 183
Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
IGLE+GSVW RLG++VTVVE+ I P D E K Q++L KQ MKF L +KV G
Sbjct: 184 VIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATA 243
Query: 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
DGV LTLEPAAGG L+AD VLV+ GR P+T GLGL+ +G+ETDK G + N+
Sbjct: 244 GADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGML-ANDHHR 302
Query: 344 TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGK 403
T++PGV+ IGDV GPMLAHKAE++ VAC+E +AGK G V+Y +PGV+YT PEVA+VGK
Sbjct: 303 TSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGK 362
Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
TEEQ+K G Y+VGKFPF ANSRAK + EG KILA+ TD++LGVH++ P+ E+I
Sbjct: 363 TEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMI 422
Query: 464 HEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
E +A+ + AS+EDIA CH HPT SEAL++AAM +
Sbjct: 423 GEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGWAMQA 466
|
Length = 466 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 571 bits (1475), Expect = 0.0
Identities = 211/467 (45%), Positives = 287/467 (61%), Gaps = 3/467 (0%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
+ VVV+G GP GY AA +AA LGL+T C+E+ LGG CLNVGCIPSKALLH + +
Sbjct: 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVI 61
Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
EA + A HG+ F ++D+ M A+K+K V LT G+ G+ K KVT V G GKF
Sbjct: 62 EEA-KALAEHGIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGG 120
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
+ + V +G TV++ N IIA GS LP I D+ RI ST AL L EVPK+L+V+
Sbjct: 121 NTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALELKEVPKRLLVM 180
Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
G G IGLEMG+V+ RLGSEV VVE ++P+ D +I K F + ++KQ ML+TKV
Sbjct: 181 GGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA 239
Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
V+ DG+ +T+E + D VLV+ GR P L +K GVE D+ G I V++
Sbjct: 240 VEAKEDGIYVTMEGKKAPAEPQ-RYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDK 298
Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
+ TN+P ++AIGD++ PMLAHK +G E +AGK + D +P + YT PEVA
Sbjct: 299 QCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAW 358
Query: 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG 460
VG TE++ KE G+EY FP+ A+ RA A D A+G+ K++ +KET ++LG I+ NAG
Sbjct: 359 VGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAG 418
Query: 461 ELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
EL+ E LAI +EDIA HAHPT+ E++ AA A +
Sbjct: 419 ELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGSITDL 465
|
Length = 471 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 557 bits (1439), Expect = 0.0
Identities = 205/466 (43%), Positives = 282/466 (60%), Gaps = 13/466 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DV+VIG GP GYVAA +AA+LG K IEK G LGGTCLNVGCIPSKAL+ ++ +HEA
Sbjct: 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAK 63
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGI-EGLFKKNKVTYVKGYGKFISPSEV 163
H G+ ++D +MA+ + G+ EGL KK K+ +KG +F+ P
Sbjct: 64 H-AEEFGIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--- 119
Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT-IDEKRIVSSTGALALNEVPKKLVVIGA 222
+T+E ++ KNI+IATGS V +PG+ I R+++S A L+++PK L VIG
Sbjct: 120 --NTVEVNGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFELDKLPKSLAVIGG 177
Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
G IGLE+G +RLG +VTV E I+P D E+ KQ Q+ L K+ K L KV V+
Sbjct: 178 GVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVE 236
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
SGD LE GG+ +EAD VLV+ GR P T GLGL+ G+E D+ GR V+E
Sbjct: 237 KSGDEKVEELE--KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT 294
Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASV 401
T++PG+YA GDV P L H+A ++G E AG G V Y +P VV+T P++ASV
Sbjct: 295 QTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASV 354
Query: 402 GKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGE 461
G TEE++K G++Y VG+ PF A RA+ + +G VK+ A+K+T ++LG HI+ P+A
Sbjct: 355 GLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEH 414
Query: 462 LIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
LIH A+ + ED+ R+ HPT+SE L+ A K IH
Sbjct: 415 LIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFSKLIHG 460
|
Length = 460 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 489 bits (1262), Expect = e-170
Identities = 210/473 (44%), Positives = 291/473 (61%), Gaps = 12/473 (2%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE 102
E D+V+IGGGPGGYVAAI+A QLGLKT +EK G LGGTCL+ GCIPSKALLHS+ ++
Sbjct: 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK-GKLGGTCLHKGCIPSKALLHSAEVFQT 62
Query: 103 AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
A + + G+ S +D + +KD V LT+G+ L KK K+ G G+ + PS
Sbjct: 63 AKKA-SPFGISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSI 121
Query: 163 -------VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPK 215
VSV+T G N ++ +N++IATGS LPG+ D + ++SS AL+L +PK
Sbjct: 122 FSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDEALSLETLPK 181
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
LV++G G IGLE S+ A G EVTVVE A I+P+ D E+ K+ R L+K ++ +
Sbjct: 182 SLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTG 241
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
KV+G+ L DG + + GE+ LEAD VLVS GR P T G+GL+ ++ + G
Sbjct: 242 AKVLGLTLKKDG-GVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEG-GF 299
Query: 336 IPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH-VDYDKVPGVVYT 394
I +++ T +YAIGDVI P LAH A +G E +AGK DY +P YT
Sbjct: 300 IQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYT 359
Query: 395 HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHI 454
PEVASVG TEE+ KE G + +VGKFPF AN +A +++G VK++A+++T ILGV
Sbjct: 360 DPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQA 419
Query: 455 MAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
+ P+ ELI E LA+ A ++A H HPT+SEA++EAA+A +HI
Sbjct: 420 VGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAADGHALHI 472
|
Length = 472 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 391 bits (1006), Expect = e-132
Identities = 190/455 (41%), Positives = 264/455 (58%), Gaps = 6/455 (1%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DVVV+G GPGGYVAAI+AAQLGLKT +EK+ GG CLNVGCIPSKALL ++ + H
Sbjct: 6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFT 64
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
+ G+ V D A + K +G+ L KKNK+T + GYG F + +
Sbjct: 65 KEAKTFGIS-GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLE 123
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
VD +GG V N IIATGS + LPG ++ E +V+ + E+PK +V+ GAG
Sbjct: 124 VDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSE-NVVTYEEQILSRELPKSIVIAGAGA 182
Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
IG+E V G +VT+VEF +P+ D E+ K+ + +K +K + TKV +D +
Sbjct: 183 IGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDN 242
Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
G V +T+ G + LEAD VL + G P G GL+K GV G I +++ T
Sbjct: 243 GSKVTVTVSKKDGKAQE-LEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT 301
Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH--VDYDKVPGVVYTHPEVASVG 402
N+P +YAIGDV LAH AE GV E +AG DY +P + P+VAS G
Sbjct: 302 NVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFG 361
Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
TEEQ +E G + +V KFPF AN +A + D G VK++A+ + ++LG H++ P+ EL
Sbjct: 362 LTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSEL 421
Query: 463 IHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497
+ E LA +D ++E++AR H HPT+SEALKEA
Sbjct: 422 LPELTLAQKWDLTAEELARNVHTHPTLSEALKEAF 456
|
Length = 466 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 365 bits (940), Expect = e-122
Identities = 160/462 (34%), Positives = 240/462 (51%), Gaps = 16/462 (3%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D +VIG G G A +AA LG+K IE RG LGGTC+N GC+P+K L+ S+ H A
Sbjct: 7 DAIVIGAGQAGPPLAARAAGLGMKVALIE-RGLLGGTCVNTGCVPTKTLIASARAAHLAR 65
Query: 105 HSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSE 162
+ A +GV V VD A+MA+K + + G E + V +G+ +F SP+
Sbjct: 66 RA-AEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNT 124
Query: 163 VSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
V V G ++ K I I TG+ + +PG+ DE +++ +L+E+P+ LV+I
Sbjct: 125 VRV-----GGETLRAKRIFINTGARAAIPPIPGL--DEVGYLTNETIFSLDELPEHLVII 177
Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
G GYIGLE ++ R GSEVTV+E ++P D ++ + LE++ + L + +
Sbjct: 178 GGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIR 237
Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
V+ GDG+ + L+ G + + +LV+ GR P T LGL+ GVETD G I V++
Sbjct: 238 VERDGDGIAVGLDCNGGAPE--ITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDD 295
Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHVDYDKVPGVVYTHPEVA 399
+ T PG+YA GD H A D L G V VP YT P +A
Sbjct: 296 QLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLA 355
Query: 400 SVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
VG TE + ++ G VG P RA + +G +K++ + +TD+ILG I+ +
Sbjct: 356 RVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHG 415
Query: 460 GELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501
E+IHE + A+ A ++R H HPT+SE + A A
Sbjct: 416 DEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALR 457
|
Length = 463 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 365 bits (938), Expect = e-122
Identities = 176/464 (37%), Positives = 262/464 (56%), Gaps = 12/464 (2%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
+VVIGGGP GYVAAI AAQ G T I++ LGGTCLN GC+P+K+LL S+ ++ +
Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLIDE-ADLGGTCLNEGCMPTKSLLESAEVHDKVKK 61
Query: 106 SFASH-GVKFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
A+H G+ S+ +D M A+K + V+ L +GI+ L KKNK+ ++G F +
Sbjct: 62 --ANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHR 119
Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
V V+ VV + IIA GS+ LP D K I++S A++L +P L+++G
Sbjct: 120 VRVEY-GDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSIPSSLLIVGG 178
Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
G IG E S+++RLG++VT+VE A ++P D +I + LE +K + G++
Sbjct: 179 GVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
E G + A+ VLVS GR P L L+K GV+ G I VNE
Sbjct: 239 SYKKQALFEYE----GSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHM 293
Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVG 402
TN+P +YA GDVI G LAH A +G +G+ V+Y VP +YT PE+ASVG
Sbjct: 294 QTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVG 353
Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
TE+Q +E + R+G+FPF AN +A I + G VK++ E + +I+G+ I+ P A EL
Sbjct: 354 LTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATEL 413
Query: 463 IHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506
I + + I+ + +++ + AHPT+SEA+ EA + +H
Sbjct: 414 IGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVGHAVH 457
|
Length = 458 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 352 bits (905), Expect = e-117
Identities = 176/459 (38%), Positives = 260/459 (56%), Gaps = 14/459 (3%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D+V+IG G + AAIKAA+LG +E RG LGGTC+NVGC+PSK LL ++ + H A
Sbjct: 2 DLVIIGSGAAAFAAAIKAAELGASVAMVE-RGPLGGTCVNVGCVPSKMLLRAAEVAHYAR 60
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKNKVTYVKGYGKFISPSEV 163
G ++V VD ++ K + V L E + V Y++G +F P V
Sbjct: 61 KPP--FGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTV 118
Query: 164 SVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIG 221
VD G V K +IATG+ + +PG+ E ++S ALAL+ +P+ L VIG
Sbjct: 119 KVD---LGREVRGAKRFLIATGARPAIPPIPGL--KEAGYLTSEEALALDRIPESLAVIG 173
Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281
G IG+E+ +ARLGSEVT+++ + ++P + EI + +L ++ ++ + +V V
Sbjct: 174 GGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAV 233
Query: 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
+ G G +T+E G + +EAD +LV+ GR P T GLGL+K GV+ D+ G I V+E
Sbjct: 234 SVRGGGKIITVE--KPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET 291
Query: 342 FATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
T+ PG+YA GDV G L + A ++G VA L G + +D +P VV+T P VAS
Sbjct: 292 LRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVAS 351
Query: 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG 460
VG TE + ++ G+E P RA+ D G +K++AE T K+LGV ++AP A
Sbjct: 352 VGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAA 411
Query: 461 ELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 499
E+I+EA LAI + +D+ H PTM+E LK AA
Sbjct: 412 EVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQT 450
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (860), Expect = e-110
Identities = 153/472 (32%), Positives = 243/472 (51%), Gaps = 44/472 (9%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D+VVIG GP G AA++AA+LG + IE+ +GG C + G IPSKAL + +
Sbjct: 7 DLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAV-LRLIGF 65
Query: 105 HS---FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS 161
+ ++S+ VK + + ++A+ D ++ G +++N+V ++G +F+ P
Sbjct: 66 NQNPLYSSYRVK---LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH 122
Query: 162 EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIG 221
V V+ +G + I+IATGS P + D RI S L+L+ +P+ L++ G
Sbjct: 123 TVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILSLDHLPRSLIIYG 182
Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281
AG IG E S++A LG +VT++ ++ +D EI L + +V V
Sbjct: 183 AGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKV 242
Query: 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
+ DGV + L+ G+K ++AD +L + GRT T GL L+ G+E D G++ VNE
Sbjct: 243 EGGDDGVIVHLK---SGKK--IKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNEN 297
Query: 342 FATNIPGVYAIGDVIPGPMLAHKAEEDG--VACVEFLAGKHGHVDYDKVPGVVYTHPEVA 399
+ T +P +YA+GDVI P LA + + G A ++ +P +YT PE++
Sbjct: 298 YQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLIED--IPTGIYTIPEIS 355
Query: 400 SVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
SVGKTE+++ V Y VG+ F +RA+ D G++KIL +ET +ILGVH A
Sbjct: 356 SVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERA 415
Query: 460 GELIH--EAVLA------------INYDASSEDIARVCHAHPTMSEALKEAA 497
E+IH +A++ NY PTM+EA + AA
Sbjct: 416 TEIIHIGQAIMEQKGTIEYFVNTTFNY--------------PTMAEAYRVAA 453
|
Length = 461 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 268 bits (688), Expect = 1e-84
Identities = 148/464 (31%), Positives = 223/464 (48%), Gaps = 42/464 (9%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D++VIGGG GG +A +AA G K IE + LGGTC+NVGC+P K + + + EA
Sbjct: 6 DLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQ-IAEAF 63
Query: 105 HSFASHGVKFSSVEV--DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
H +A G F E D ++A +D + L + N V ++G+ +F+
Sbjct: 64 HDYAP-GYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAH- 121
Query: 163 VSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGI--TIDEKRIVSSTGALALNEVPKKLV 218
T+E +I+IATG + +PG I S G AL E+PK++
Sbjct: 122 ----TVEVNGERYTADHILIATGGRPSIPDIPGAEYGIT------SDGFFALEELPKRVA 171
Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
V+GAGYI +E V LGSE + + D +IR+ +EK+ ++
Sbjct: 172 VVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVP 231
Query: 279 VGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
V+ + DG + LTLE GE L D ++ + GR P T GLGL+ GV+ ++ G I
Sbjct: 232 KAVEKNADGSLTLTLE---DGE--TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYII 286
Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTH 395
V+E TN+PG+YA+GDV L A G E L +DY +P VV++H
Sbjct: 287 VDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSH 346
Query: 396 PEVASVGKTEEQVKELGVE-----YRVGKFPF---LANSRAKAIDDAEGIVKILAEKETD 447
P + +VG TEE+ +E E YR P L R ++K++ + +
Sbjct: 347 PPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPC------LMKLVVVGKEE 400
Query: 448 KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 491
K++G+H + A E+I +AI A+ D HPT +E
Sbjct: 401 KVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444
|
Length = 450 |
| >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (662), Expect = 7e-79
Identities = 172/575 (29%), Positives = 257/575 (44%), Gaps = 101/575 (17%)
Query: 15 SRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIE- 73
S + + +S +E DV +IG G GG+ AAI A + GLK
Sbjct: 98 SLRANGFATSQSMNFS----------DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTG 147
Query: 74 KRGALGGTCLNVGCIPSKALLHSS----------HMYHEAMHSFASHGVKFSSVE----- 118
++GGTC+NVGCIPSKALL+++ +Y +++ A K VE
Sbjct: 148 DDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKNGKNDPVERNQLV 207
Query: 119 -----VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVD--TIEG- 170
+D+ + + L GIE K K + + I VD TI+
Sbjct: 208 ADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE 267
Query: 171 --GNTVVKGKNIIIATGSDVKSLP-GITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGL 227
G K KNIIIATGS ++P I +D+K + +S A+ L + + ++G G IGL
Sbjct: 268 KSGKEF-KVKNIIIATGS-TPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGL 325
Query: 228 EMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGD 286
E ++ LGSEV E++ ++P +D ++ K F+R K K ++ L T + V
Sbjct: 326 EFMDIYTALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG 385
Query: 287 GVKLTL---EPAAGGEKTILEA---------DVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
+ + E G + D LV+ GR P T LGLDK+ ++ K G
Sbjct: 386 NQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQM-KRG 444
Query: 335 RIPVNERFATN------IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH------ 382
+ V+E ++ IGD MLAH A + V+++ GK
Sbjct: 445 FVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINV 504
Query: 383 -------VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP--FLANSRAKA--- 430
+ Y +P V YT PE+A +G TE++ KEL VG + ANS+
Sbjct: 505 ENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENN 564
Query: 431 -------------------IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAIN 471
+D+ EG+VKI+ K+T +ILG+ I+ A LIHE VLAIN
Sbjct: 565 ISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAIN 624
Query: 472 YDASSEDIARVCHAHPTMSEAL-----KEAAMATH 501
S +D+A + H+HPT+SE L A + TH
Sbjct: 625 LKLSVKDLAHMVHSHPTISEVLDAAFKAIAGVRTH 659
|
Length = 659 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 245 bits (626), Expect = 7e-76
Identities = 139/458 (30%), Positives = 221/458 (48%), Gaps = 39/458 (8%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL-GGTCLNVGCIPSKALLHSSHMYHEA 103
D++VIG G G A K A G K +E+ A+ GGTC+N+GCIP+K LL +
Sbjct: 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVA------- 57
Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
A + F V MA K+ S L + + V F+S +
Sbjct: 58 ----AEKNLSFEQV-------MATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVI 106
Query: 164 SV----DTIEGGNTVVKGKNIIIATG--SDVKSLPGITIDEKRIVSSTGALALNEVPKKL 217
V + IE + + I+I TG S+V +PG+ D K + STG +L +P++L
Sbjct: 107 EVQAGDEKIE-----LTAETIVINTGAVSNVLPIPGLA-DSKHVYDSTGIQSLETLPERL 160
Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277
+IG G IGLE ++ +LGS+VTV++ A+ I+P + + ++ +E+ + F+L
Sbjct: 161 GIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAH 220
Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
V GD V + E E D +L + GR P T LGL+ +E + G I
Sbjct: 221 TTEVKNDGDQVLVVTE----DETYRF--DALLYATGRKPNTEPLGLENTDIELTERGAIK 274
Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTH 395
V++ T++PGV+A+GDV GP + + +D +L G + D VP ++
Sbjct: 275 VDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFIT 334
Query: 396 PEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIM 455
P ++ VG TE++ KE G+ Y V + A RA +D G K++ ET +ILG +
Sbjct: 335 PPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLF 394
Query: 456 APNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+ E+I+ +A++ + HPTM+E L
Sbjct: 395 GEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENL 432
|
Length = 438 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 246 bits (628), Expect = 1e-75
Identities = 145/456 (31%), Positives = 239/456 (52%), Gaps = 11/456 (2%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
+ VIG G AA+KA + G + T IE RG +GGTC+N+GC+PSK ++ ++H+ H
Sbjct: 9 IAVIGSGGSAMAAALKATERGARVTLIE-RGTIGGTCVNIGCVPSKIMIRAAHIAHLRRE 67
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKNK-VTYVKGYGKFISPSEV 163
S G+ + VD A++AQ+ V L + + ++N +T + G +F+ +
Sbjct: 68 SPFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTL 127
Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
+V +GG V I TG+ P + E ++ST AL L+ +P++L+VIGA
Sbjct: 128 TVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELDHIPERLLVIGAS 187
Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
+ LE+ +ARLGS VTV+ + ++ D + + + + ++ ++ + +T+ VD
Sbjct: 188 VVALELAQAFARLGSRVTVLA-RSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDY 246
Query: 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
+G + LE AG L A+ +LV+ GRTP T L L+ IGVET++ G I ++E
Sbjct: 247 NGR--EFILETNAG----TLRAEQLLVATGRTPNTENLNLESIGVETER-GAIRIDEHLQ 299
Query: 344 TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGK 403
T + G+YA GD P + A G + G +D +P V++T P+VA+VG
Sbjct: 300 TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGL 359
Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
+E + + G + RA D G +K++AE+ + ++LGV ++A AGELI
Sbjct: 360 SEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELI 419
Query: 464 HEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 499
AV+A+ + +IA + TM E LK A
Sbjct: 420 QTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQT 455
|
Length = 468 |
| >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 7e-71
Identities = 146/465 (31%), Positives = 228/465 (49%), Gaps = 22/465 (4%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
V VIG G AA+KA + G + T IE RG +GGTC+NVGC+PSK ++ ++H+
Sbjct: 96 ERPLHVAVIGSGGAAMAAALKAVEQGARVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIA 154
Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFI 158
H S G+ + +D ++AQ+ V L EG+ N +T + G +F
Sbjct: 155 HLRRESPFDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFK 214
Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKK 216
+ V +GG VV +IATG+ V +PG+ E +ST AL + +P++
Sbjct: 215 DDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK--ETPYWTSTEALVSDTIPER 272
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE----FAADIVPSMDGEIRKQFQRSLEKQKMKF 272
L VIG+ + LE+ +ARLGS+VT++ F + D I + + + ++
Sbjct: 273 LAVIGSSVVALELAQAFARLGSKVTILARSTLFFRE-----DPAIGEAVTAAFRAEGIEV 327
Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
+ T+ V + + L G L AD +LV+ GR P T L LD GV +
Sbjct: 328 LEHTQASQV--AHVDGEFVLTTGHGE----LRADKLLVATGRAPNTRSLALDAAGVTVNA 381
Query: 333 MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV 392
G I +++ T++P +YA GD P + A G + G +D +P VV
Sbjct: 382 QGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVV 441
Query: 393 YTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGV 452
+T P+VA+VG +E + G+E RA A D G +K++ E+ + +++GV
Sbjct: 442 FTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGV 501
Query: 453 HIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497
+AP AGELI A LAI + +++A + TM E LK AA
Sbjct: 502 QAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAA 546
|
Length = 561 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 2e-70
Identities = 112/319 (35%), Positives = 155/319 (48%), Gaps = 39/319 (12%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DVV+IGGGP G AAI+ A+LGLK IE+ GGTC N GC+P K LL + A+
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIER---EGGTCYNRGCLPKKLLLEVAEGLELAI 57
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
+A ++ G+E L V +G +
Sbjct: 58 G-------------------LALPEEVYKE--FGVEVLLGTEVVDIDRGEKTVVLKDVE- 95
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRIVS-STGALALNEVPKKLVVIG 221
+ +IIATG+ + PG+ + R V S L L E+PK++VV+G
Sbjct: 96 ------TGREITYDKLIIATGARPRIPGIPGVEVATLRGVIDSDEILELLELPKRVVVVG 149
Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281
GYIGLE+ + A+LG EVTVVE ++ D EI LEK + + VV V
Sbjct: 150 GGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLEKLEKLLLGVTVLLVVVVV 209
Query: 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
GDG + ++ G+ L+ADVVLV+ GR P T L++ GVE D+ G I V+E
Sbjct: 210 VKVGDGKVVEVK---LGDGEELDADVVLVAIGRRPNTE--LLEQAGVELDERGYIVVDEY 264
Query: 342 FATNIPGVYAIGDVIPGPM 360
T++PG+YA GDV G
Sbjct: 265 LRTSVPGIYAAGDVAEGKP 283
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 230 bits (590), Expect = 2e-70
Identities = 140/460 (30%), Positives = 229/460 (49%), Gaps = 25/460 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D+++IG G G + + A + +EK G GGTCLNVGCIP+K ++++ +
Sbjct: 3 DLIIIGTGSGNSILDERFA--DKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIR 59
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIE---GLFKKNKVTYVKGYGKFISPS 161
+ A GV V P ++++ + + G E G N + +G+ +FI P
Sbjct: 60 EA-ARLGVDAELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPN-IDVYRGHARFIGPK 117
Query: 162 EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIG 221
+ G + ++IA GS P I R +S + L E+P+ LV++G
Sbjct: 118 TLRT----GDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELPESLVIVG 173
Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281
G+I E V++ LG VTVV + ++ +D +I ++F L ++ L VVGV
Sbjct: 174 GGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTE-LASKRWDVRLGRNVVGV 232
Query: 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
G GV L L G + +EADV+LV+ GR P L GV+ D+ GR+ V+E
Sbjct: 233 SQDGSGVTLRL---DDG--STVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEY 287
Query: 342 FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH----VDYDKVPGVVYTHPE 397
T+ GV+A+GDV L H A + L H D+ VP V+THP+
Sbjct: 288 QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLL--HPDDLIASDHRFVPAAVFTHPQ 345
Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
+ASVG TE + + G++ V + + A++D G VK++A+++T ++LG HI+ P
Sbjct: 346 IASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGP 405
Query: 458 NAGELIHEAVLAINYDASSEDIARVCH-AHPTMSEALKEA 496
A LI + A+++ + ++AR + HP + E ++ A
Sbjct: 406 QASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENA 445
|
Length = 451 |
| >gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 2e-69
Identities = 143/455 (31%), Positives = 230/455 (50%), Gaps = 12/455 (2%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
V +IG G + AAIKAA+ G + T IE +GG C+NVGC+PSK L+ ++ + H+
Sbjct: 19 VAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQ-QR 77
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKN-KVTYVKGYGKFISPSEV 163
S GV+ + +D ++ Q+ V L + + N +T +KGY +F + +
Sbjct: 78 SNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTL 137
Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT-IDEKRIVSSTGALALNEVPKKLVVIGA 222
V +GG V+ +IATGS ++P I + + +ST AL +E+P L VIG+
Sbjct: 138 VVRLHDGGERVLAADRCLIATGS-TPTIPPIPGLMDTPYWTSTEALFSDELPASLTVIGS 196
Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
+ E+ +ARLGS VT++ + ++ D + + EK+ ++ + T+ V+
Sbjct: 197 SVVAAEIAQAYARLGSRVTILA-RSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVE 255
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
+G LT G + A+ +L+S GR T L L+ +GV TD G I VN
Sbjct: 256 HDDNGFVLTT-----GHGELR-AEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAM 309
Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVG 402
T+ P +YA GD P + A G + G + +D +P V++T P+VA+VG
Sbjct: 310 ETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVG 369
Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
+E + G+E RA A + +G +K++AE+ T K++G I+A GEL
Sbjct: 370 LSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGEL 429
Query: 463 IHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497
I A LAI+ + E++A + TM E LK A
Sbjct: 430 IQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCA 464
|
Length = 479 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 6e-68
Identities = 148/471 (31%), Positives = 231/471 (49%), Gaps = 29/471 (6%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
+V+IGGGPGGY AA+ AAQLG T IE+ G LGG + C+PSK L+ ++ E
Sbjct: 4 IVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATA----EVRT 58
Query: 106 SFASH---GVKFSS---VEVDLPAMMAQKDKAVSNLTRG----IEGLFKKNKVTYVKGYG 155
G++F VDLPA+ A+ V L I ++ V + G G
Sbjct: 59 ELRRAAELGIRFIDDGEARVDLPAVNAR----VKALAAAQSADIRARLEREGVRVIAGRG 114
Query: 156 KFIS----PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN 211
+ I P V V T +GG + ++IATG+ + LP D +RI++ L+
Sbjct: 115 RLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWRQLYDLD 174
Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
E+P+ L+V+G+G G E S + LG +VT+V ++P D + + + ++ M
Sbjct: 175 ELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMT 234
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
+ +++ V+ +GDGV +TL + +E L++ G P TAGLGL++ GVE
Sbjct: 235 VLKRSRAESVERTGDGVVVTLT-----DGRTVEGSHALMAVGSVPNTAGLGLEEAGVELT 289
Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG-VACVEFLAGKHGHVDYDKVPG 390
G I V+ T++PG+YA GD LA A G +A L + V
Sbjct: 290 PSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVAS 349
Query: 391 VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKIL 450
V+T PE+A+VG ++ + V R P N RAK +G VK+ T ++
Sbjct: 350 NVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVI 409
Query: 451 GVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501
G ++AP A ELI LA+ + +D+A+ +P++S ++ EAA
Sbjct: 410 GGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARRLM 460
|
Length = 466 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 1e-63
Identities = 143/454 (31%), Positives = 232/454 (51%), Gaps = 16/454 (3%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D +VIGGG GG +A +AA+ G K +E + LGGTC+NVGC+P K + ++S + E M
Sbjct: 4 DYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDL-AERM 61
Query: 105 HSFASHGVKFSSV-EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
H A +G + + P + ++D V L + +KNKV + G+ +F V
Sbjct: 62 HDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTV 121
Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
V+ +I+IATG I E S G AL E+PK++V++GAG
Sbjct: 122 EVN-----GRDYTAPHILIATGGKPSFPENIPGAELGT-DSDGFFALEELPKRVVIVGAG 175
Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
YI +E+ V LGSE +V ++ S D I + EK+ + +K V V+
Sbjct: 176 YIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEK 235
Query: 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343
+ +G KL + G K+I + D ++ + GR P T GLGL+ +G++ ++ G+I V+E
Sbjct: 236 TVEG-KLVIHFEDG--KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQN 292
Query: 344 TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTHPEVASV 401
TN+PG+YA+GDV+ L A G E L +DY+ VP VV++HP + ++
Sbjct: 293 TNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTI 352
Query: 402 GKTEEQ-VKELGVE-YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
G TE++ +++ G E +V F A + + +K++ + +K++G+H +
Sbjct: 353 GLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGV 412
Query: 460 GELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
E++ +AI A+ D HPT SE L
Sbjct: 413 DEMLQGFAVAIKMGATKADFDNTVAIHPTSSEEL 446
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 210 bits (535), Expect = 2e-62
Identities = 126/456 (27%), Positives = 216/456 (47%), Gaps = 24/456 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D+ VIG G GG AA AA LG K I + +GGTC+ GC+P K ++++S + E
Sbjct: 4 DLFVIGAGSGGVRAARLAAALGAKVA-IAEEFRVGGTCVIRGCVPKKLMVYASQ-FAEHF 61
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
A +G D ++A KD+ ++ L+ + G + + P+ V
Sbjct: 62 EDAAGYGWTVGKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGPNTVE 121
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVK--SLPG----ITIDEKRIVSSTGALALNEVPKKLV 218
V T + I+IA G +LPG IT +E A L +PK ++
Sbjct: 122 VLASGKTYT---AEKILIAVGGRPPKPALPGHELGITSNE--------AFHLPTLPKSIL 170
Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
+ G GYI +E ++ LG + T++ +I+ D ++R+ +LE++ ++ + + +
Sbjct: 171 IAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEERGIRILPEDSI 230
Query: 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338
+ DG +L + E + ADVVL + GR+P T GLGL+ GV + +G I V
Sbjct: 231 TSISKDDDG-RLKATLSKHEE---IVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286
Query: 339 NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEF-LAGKHGHVDYDKVPGVVYTHPE 397
+E T+ P +YA+GDV L A + E D+D + V++ P
Sbjct: 287 DEYSRTSTPSIYAVGDVTDRINLTPVAIHEATCFAETEFGNNPTSFDHDLIATAVFSQPP 346
Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
+ +VG TEE+ + + V + F + + ++K++ + + DK+LG H++ P
Sbjct: 347 IGTVGLTEEEARRKFGDIEVYRAEFRPMKATFSGRQEKTLMKLVVDAKDDKVLGAHMVGP 406
Query: 458 NAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+A E+I +A+ A+ +D HPT +E L
Sbjct: 407 DAAEIIQGLAIALKMGATKDDFDSTVAVHPTSAEEL 442
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 8e-62
Identities = 138/462 (29%), Positives = 233/462 (50%), Gaps = 21/462 (4%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D+++IG G G +I + K I ++G GGTCLNVGCIP+K ++++ +
Sbjct: 4 DLIIIGTGSGN---SIPDPRFADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIG 60
Query: 105 HSFASHGVKFSSVEVDLPAMMAQK-DKAVSNLTRGIEGLFKKNK---VTYVKGYGKFISP 160
S A G+ V P ++++ + + G E + ++ + G+ +F+ P
Sbjct: 61 ES-ARLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGP 119
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
+ E + G I+IA GS P I R ++ + L E+P+ LV++
Sbjct: 120 RTLRTGDGE----EITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIV 175
Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
G GYI E V++ LG+ VT+V + ++ +D +I +F + K+K L V
Sbjct: 176 GGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTE-IAKKKWDIRLGRNVTA 234
Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
V+ GDGV LTL+ + + + ADV+LV+ GR P L + GVE D+ GRI V+E
Sbjct: 235 VEQDGDGVTLTLD-----DGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE 289
Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEV 398
T+ GV+A+GDV L H A + L + +D VP V+THP++
Sbjct: 290 YGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQI 349
Query: 399 ASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458
A+VG TE++ +E G + V + + A++D G K++A+++T K+LG HI+ P
Sbjct: 350 ATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQ 409
Query: 459 AGELIHEAVLAINYDASSEDIARVCH-AHPTMSEALKEAAMA 499
A LI + A+ + + ++AR + HP + E ++ A +
Sbjct: 410 ASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLG 451
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 3e-59
Identities = 133/455 (29%), Positives = 223/455 (49%), Gaps = 32/455 (7%)
Query: 47 VVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL-GGTCLNVGCIPSKALLHSSHMYHEAMH 105
V+IG G G A+ A+ G + IE+ A+ GGTC+N+GCIP+K L+H +
Sbjct: 7 VIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ------ 60
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNL-TRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
D + +K++ V+ L + L + + G +FI+ +
Sbjct: 61 ------------HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLR 108
Query: 165 VDTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
V GN + G+ I I TG+ V +PGIT + STG L L E+P L ++G
Sbjct: 109 VHR-PEGNLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTGLLNLKELPGHLGILGG 166
Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
GYIG+E S++A GS+VT++E A+ +P D +I L Q + +L V +
Sbjct: 167 GYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERIS 226
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
+ V++ E A L D +L+++GR P TA L + G+ ++ G I V++
Sbjct: 227 HHENQVQVHSEHAQ------LAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL 280
Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEED-GVACVEFLA-GKHGHVDYDKVPGVVYTHPEVAS 400
T ++A+GDV G + + +D + E L GK D VP V+ P ++
Sbjct: 281 HTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSR 340
Query: 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG 460
VG TEEQ +E G + +V P A RA+ ++D G++K + + +T +ILG ++ ++
Sbjct: 341 VGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSH 400
Query: 461 ELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495
E+I+ + ++ + HP+MSE+L +
Sbjct: 401 EMINIVKMVMDAGLPYSILRDQIFTHPSMSESLND 435
|
Length = 441 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 8e-58
Identities = 127/465 (27%), Positives = 216/465 (46%), Gaps = 24/465 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHS 96
D++VIGGG GG AA +AA G K ++ R +GGTC+NVGCIP K + +
Sbjct: 4 DLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQA 63
Query: 97 SHMYHEAMHSFASHGVKF-SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG 155
+ + S +G K +V+ D ++ + +L G ++ KV Y Y
Sbjct: 64 ALLGQALKDSRN-YGWKVEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYENAYA 122
Query: 156 KFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPK 215
+F+ + +G + + +IATG + PGI ++ ++S +L P
Sbjct: 123 EFVDKHRIKATNKKGKEKIYSAERFLIATGERPR-YPGIPGAKELCITSDDLFSLPYCPG 181
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
K +V+GA Y+ LE A +G +VTV+ + ++ D + + +E+ +KF +
Sbjct: 182 KTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDCANKVGEHMEEHGVKFKRQ 240
Query: 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEA-DVVLVSAGRTPFTAGLGLDKIGVETDK-M 333
+ V+ V + I E D VL++ GR T L L+ +GV+ +K
Sbjct: 241 FVPIKVEQIEAKVLVE---FTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKT 297
Query: 334 GRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGV 391
G+IP +E TN+P +YA+GD++ P L A + G + L G DY+ VP
Sbjct: 298 GKIPADEEEQTNVPYIYAVGDILEDKPELTPVAIQAGRLLAQRLFKGSTVICDYENVPTT 357
Query: 392 VYTHPEVASVGKTEEQVKEL----GVEYRVGKFPFLANSRAKAIDDAEGIVKILA-EKET 446
V+T E + G +EE+ E VE F L + + + K++ +KE
Sbjct: 358 VFTPLEYGACGLSEEKAVEKFGEENVEVFHSYFWPLEWTIPSRDNHNKCYAKLVCNKKEN 417
Query: 447 DKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 491
++++G H++ PNAGE+ A+ + +D+ HP +E
Sbjct: 418 ERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAE 462
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 2e-54
Identities = 139/468 (29%), Positives = 225/468 (48%), Gaps = 38/468 (8%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIE---------KRGALGGTCLNVGCIPSKALLH 95
D+ VIG G GG AA +A G K E G +GGTC+ GC+P K L++
Sbjct: 27 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVY 86
Query: 96 SSHMYHEAMHSFASHGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
+ + ++G + + V+ + ++ +K + L + L V +G
Sbjct: 87 GA-TFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGE 145
Query: 155 GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPG----ITIDEKRIVSSTGAL 208
GK + P+EV V ++G K+I+IATGS + ++PG IT DE AL
Sbjct: 146 GKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITSDE--------AL 197
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
+L E+PK+ VV+G GYI +E S+W +G+ V + + D E+R R+LE +
Sbjct: 198 SLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGR 257
Query: 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV 328
+ +T + + + G+K+ + G E ADVVL + GR P T L L+ +GV
Sbjct: 258 GINLHPRTNLTQLTKTEGGIKVITD--HGEE---FVADVVLFATGRAPNTKRLNLEAVGV 312
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGV--ACVEFLAGKHGHVDYD 386
E DK G + V+E TNIP ++AIGDV L A +G A F G+ DY+
Sbjct: 313 ELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVF-GGQPTKPDYE 371
Query: 387 KVPGVVYTHPEVASVGKTEEQVKELG---VEYRVGKFPFLANSRAKAIDDAEGIVKILAE 443
V V+ P ++ VG +EE+ E + F + N+ + + ++K++ +
Sbjct: 372 NVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKT--VMKLIVD 429
Query: 444 KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 491
ETDK+LG + P+A E++ +A+ A+ HP+ +E
Sbjct: 430 AETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAE 477
|
Length = 499 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 180 bits (457), Expect = 8e-51
Identities = 147/476 (30%), Positives = 226/476 (47%), Gaps = 40/476 (8%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCI---------EKRGALGGTCLNVGCIPSKALLH 95
D+VVIG G GG A AA L K + ALGGTC+NVGC+P K L+
Sbjct: 5 DLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQTHHGPPFYAALGGTCVNVGCVPKK-LMV 63
Query: 96 SSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVK 152
+ Y + + A G +F SSV+ + A++A K+KAV ++ + EG+F + +T+
Sbjct: 64 TGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFL 123
Query: 153 GYGKFISPSEVSVDTIEGGNTVVK----GKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
G+G + V V + VK ++I++ATGS + GI E +SS A
Sbjct: 124 GWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS-WPQMLGIPGIE-HCISSNEAF 181
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSV---WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL 265
L+E P++++ +G G+I +E + + G +VT+ I+ D +RK+ + L
Sbjct: 182 YLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL 241
Query: 266 EKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLD 324
+ M V L+ DG K +T E L+ DVV+++ GR P T L LD
Sbjct: 242 RANGINIMTNENPAKVTLNADGSKHVTFESGK-----TLDVDVVMMAIGRVPRTQTLQLD 296
Query: 325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE-FLAGKHGHV 383
K+GVE K G I V+E TN+P +YAIGDV ML A +G A V+ K
Sbjct: 297 KVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKT 356
Query: 384 DYDKVPGVVYTHPEVASVGKTEEQVK---ELGVEYRVGKFPFLAN---SRAKAIDDAEGI 437
D+ +V V++ P + + G EE E Y P + N S+ K +
Sbjct: 357 DHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKF-----V 411
Query: 438 VKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
KI+ +LGVH++ ++ E+I + + +A D HPT +E L
Sbjct: 412 AKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEEL 467
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 2e-48
Identities = 67/110 (60%), Positives = 82/110 (74%)
Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
VP VV+T PE+ASVG TEE+ K+ G E +VGKFPF AN RA A + +G VK++A+ ET
Sbjct: 1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETG 60
Query: 448 KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497
+ILG HI+ PNAGELI EA LAI A+ ED+A HAHPT+SEAL EAA
Sbjct: 61 RILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEAA 110
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 1e-44
Identities = 135/461 (29%), Positives = 218/461 (47%), Gaps = 29/461 (6%)
Query: 45 DVVVIGGGPGG---------YVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLH 95
D+ IG G GG + A+ +L T + G +GGTC+ GC+P K L++
Sbjct: 81 DLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVY 140
Query: 96 SSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG 155
+S HE S + + D ++A K+ + LT + + K VT ++G G
Sbjct: 141 ASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRG 200
Query: 156 KFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEV 213
K + P V VD + +NI+IA G + +PGI + + S AL L
Sbjct: 201 KIVDPHTVDVD-----GKLYTARNILIAVGGRPFIPDIPGI----EHAIDSDAALDLPSK 251
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
P+K+ ++G GYI LE ++ L S+V V ++ D E+R + + ++F
Sbjct: 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFH 311
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
+ + S DG L+L+ G T+ V+ + GR P T LGL+++GV+ DK
Sbjct: 312 TEESPQAIIKSADGS-LSLKTNKG---TVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKN 367
Query: 334 GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVV 392
G I V+E T++P ++A+GDV L A +G A + L G DY VP V
Sbjct: 368 GAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAV 427
Query: 393 YTHPEVASVGKTEEQ-VKELG-VEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKIL 450
++ P + VG TEEQ ++E G V+ F L + + D +K++ +T+K+L
Sbjct: 428 FSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRV--FMKLIVCAKTNKVL 485
Query: 451 GVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 491
GVH+ +A E+I +A+ + D HPT +E
Sbjct: 486 GVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAE 526
|
Length = 558 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (410), Expect = 1e-43
Identities = 124/514 (24%), Positives = 222/514 (43%), Gaps = 79/514 (15%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D++VIGGG GG AA +AA+ K +E + LGGTC+NVGC+P K + +++ + H+ +
Sbjct: 50 DLIVIGGGSGGMAAARRAARNKAKVALVE-KDYLGGTCVNVGCVPKKIMFNAASI-HDIL 107
Query: 105 HSFASHGVKFSSVEV-DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
+ +G F + +LP ++ ++DK + L KK+ V Y +G G +S ++V
Sbjct: 108 ENSRHYG--FDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQV 165
Query: 164 SVDTI------------------------EGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199
+ + V++GKNI+IA G+ P + E
Sbjct: 166 LIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNK-PIFPDVKGKEF 224
Query: 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRK 259
I SS + E K++ + G+GYI +E+ +V RLG+E + ++ D I
Sbjct: 225 TI-SSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIIN 282
Query: 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319
+ + ++K + + T ++ K + G K D V+ GR+P T
Sbjct: 283 ELENDMKKNNINII--THANVEEIEKVKEKNLTIYLSDGRKYE-HFDYVIYCVGRSPNTE 339
Query: 320 GLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI------------------PGPML 361
L L + ++T K G I V++ T++ +YA+GD P L
Sbjct: 340 DLNLKALNIKTPK-GYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYL 398
Query: 362 AHKAEEDGVACVEF----------------LAGKHGHV-DYDKVPGVVYTHPEVASVGKT 404
K G + L G +Y +P V+++HP + ++G +
Sbjct: 399 KKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLS 458
Query: 405 EEQ-VKELGVE----YRVGKFP--FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
E++ + G E Y +F F + + +K++ + + I G+HI+
Sbjct: 459 EQEAIDIYGKENVKIYE-SRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGL 517
Query: 458 NAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 491
NA E++ +A+ +A+ D HPT +E
Sbjct: 518 NADEILQGFAVALKMNATKADFDETIPIHPTAAE 551
|
Length = 561 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 5e-41
Identities = 138/488 (28%), Positives = 215/488 (44%), Gaps = 61/488 (12%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHS 96
D+VVIGGG GG AA +AA G K + + LGGTC+NVGC+P K + ++
Sbjct: 7 DLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYA 66
Query: 97 SHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGL-------FKKNKVT 149
+++ H +G K SS K V+ + I L + +KV
Sbjct: 67 ANIGSIFHHDSQMYGWKTSSSF--------NWGKLVTTVQNHIRSLNFSYRTGLRSSKVE 118
Query: 150 YVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATG---SDVKSLPGITIDEKRIVSSTG 206
Y+ G K VS T+ K I+IATG S + +PG ++ ++S
Sbjct: 119 YINGLAKLKDEHTVSYGDNSQEETIT-AKYILIATGGRPSIPEDVPGA---KEYSITSDD 174
Query: 207 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--SMDGEIRKQFQRS 264
+L++ P K +++GA YIGLE LG +VTV A +P D + ++
Sbjct: 175 IFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTV---AVRSIPLRGFDRQCSEKVVEY 231
Query: 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLD 324
+++Q F VV +++ K+ + + G T D VL + GR P GL L+
Sbjct: 232 MKEQGTLF--LEGVVPINIEKMDDKIKVLFSDG---TTELFDTVLYATGRKPDIKGLNLN 286
Query: 325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFL-AGKHGH 382
IGV +K +I TNIP ++A+GDV+ G P L A + G+ L +
Sbjct: 287 AIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEF 345
Query: 383 VDYDKVPGVVYTHPEVASVGKTEEQVKEL----GVEYRVGKFPFL---ANSRAKAIDDAE 435
+DY +P ++T E + G + E +E + +F L A R K +
Sbjct: 346 IDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARK 405
Query: 436 G----------IVKILAEKETD-KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCH 484
+ K++ K D K++G H + PNAGE+ LA+ A D +
Sbjct: 406 DEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIG 465
Query: 485 AHPTMSEA 492
HPT +E
Sbjct: 466 IHPTDAEV 473
|
Length = 499 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 8e-24
Identities = 106/445 (23%), Positives = 175/445 (39%), Gaps = 68/445 (15%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
+V++GGG G AA +L L A T + +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLL---------AAEITLIGR----------EPKYSYY--R 39
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
S V ++ + ++A GI+ + +VT + K
Sbjct: 40 CPLSLYVGGGIASLEDLRYPPRFNRA-----TGID-VRTGTEVTSIDPENK--------- 84
Query: 166 DTIEGGNTVVKGKNIIIATGSDVKSLPGIT---IDEKRIVSSTGAL-ALNEVPKKLVVIG 221
+ + ++ +++ATG+ + P + R+ AL E PK +VV+G
Sbjct: 85 -VVLLDDGEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVG 143
Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-DGEIRKQFQRSLEKQKMKFMLKTKVVG 280
AG IGLE A+ G +VT++E A + + D E+ ++ LEK ++ +L TKVVG
Sbjct: 144 AGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVG 203
Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
V+ G G L +E G + ++AD+V++ G P L D + G + V+E
Sbjct: 204 VE--GKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDE 260
Query: 341 RFAT-NIPGVYAIGDV--------IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV 391
R T P VYA GDV G +A A +A ++ +
Sbjct: 261 RGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG---RIAAENIAGALRIPGLL 317
Query: 392 VYTHPEV-----ASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKE 445
+V AS G TE KE G++ + + RA AE + +K++ + +
Sbjct: 318 GTVISDVGDLCAASTGLTEG--KERGIDVVLV-VSGGKDPRAHLYPGAELVGIKLVGDAD 374
Query: 446 TDKILGVHIMAPNAGELIHEAVLAI 470
T +ILG + I LAI
Sbjct: 375 TGRILGG--QELEVLKRIGALALAI 397
|
Length = 415 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-21
Identities = 75/330 (22%), Positives = 136/330 (41%), Gaps = 49/330 (14%)
Query: 180 IIIATGSDVKSLPGITIDEKRI--------VSSTGALALNEVPKKLVVIGAGYIGLEMGS 231
+I++ G+ I+ + + + +V+IG GYIG+EM
Sbjct: 95 LILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAE 154
Query: 232 VWARLGSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290
G VT++ + I+ D E+ + + L+K ++ L +V ++
Sbjct: 155 ALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVF 214
Query: 291 TLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350
T + +AD+V+++ G P + G++ + G I VNE+F T++P +Y
Sbjct: 215 T-------SGGVYQADMVILATGIKPNSELA--KDSGLKLGETGAIWVNEKFQTSVPNIY 265
Query: 351 AIGDV-------------IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHP- 396
A GDV +P LA A + G E +AG GV+ T+
Sbjct: 266 AAGDVAESHNIITKKPAWVP---LAWGANKMGRIAGENIAGNDIE-----FKGVLGTNIT 317
Query: 397 -----EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKIL 450
+AS G TE + K+L ++Y+ A + A + +K++ EK+T +IL
Sbjct: 318 KFFDLTIASTGVTENEAKKLNIDYKTVFVK--AKTHANYYPGNSPLHLKLIYEKDTRRIL 375
Query: 451 GVHIMAPN-AGELIHEAVLAINYDASSEDI 479
G + A + I AI + +D+
Sbjct: 376 GAQAVGKEGADKRIDVLAAAIMAGLTVKDL 405
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 8e-21
Identities = 35/78 (44%), Positives = 50/78 (64%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
++VV+G GYIGLE S A+LGS+VTVVE ++ D EI K Q LEK ++ +L
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60
Query: 276 TKVVGVDLSGDGVKLTLE 293
T V ++ +GDGV + L+
Sbjct: 61 TTVEEIEGNGDGVVVKLK 78
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 75/316 (23%), Positives = 121/316 (38%), Gaps = 51/316 (16%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DV++IGGGP G AAI AA+ GLK I + G GG +
Sbjct: 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG---------------------QLT 43
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
+ + P +M Q + G+E + + V V+ G
Sbjct: 44 KTTDVENYPGFPGGILGPELMEQMKEQAEKF--GVEIVEDE--VEKVELEGGPF------ 93
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN---EVPKKLVVIG 221
++ + K +IIATG+ G+ +E+ A K +VVIG
Sbjct: 94 --KVKTDKGTYEAKAVIIATGA-GARKLGVPGEEEFEGKGVSYCATCDGFFKGKDVVVIG 150
Query: 222 AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQ-RSLEKQKMKFMLKTKVVG 280
G +E +++ +VT+ + + + R + K++ + T V
Sbjct: 151 GGDSAVEEALYLSKIAKKVTL------VHRRDEFRAEEILVERLKKNVKIEVLTNTVVKE 204
Query: 281 VDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339
+ +GV L GE+ L D V ++ G P T L K D+ G I V+
Sbjct: 205 ILGDDVEGVVLKNVK---GEEKELPVDGVFIAIGHLPNT---ELLKGLGVLDENGYIVVD 258
Query: 340 ERFATNIPGVYAIGDV 355
E T++PG++A GDV
Sbjct: 259 EEMETSVPGIFAAGDV 274
|
Length = 305 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 6e-19
Identities = 82/324 (25%), Positives = 127/324 (39%), Gaps = 64/324 (19%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DV++IG GP G AAI AA+ LK IE G GG + + E M
Sbjct: 1 DVIIIGAGPAGLTAAIYAARANLKPLLIEG-GEPGGQLTTTTEVENYPGFPEGISGPELM 59
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
VKF + + + + K + V
Sbjct: 60 EKMKEQAVKFGAEII----------------YEEVIKVDKSGRPFKVYT----------- 92
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK---RIVSST----GALALNEVPKKL 217
G K +IIATG+ + L GI +++ R VS G N K++
Sbjct: 93 -----GDGKEYTAKAVIIATGASARKL-GIPGEDEFWGRGVSYCATCDGPFFKN---KEV 143
Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
V+G G +E R+ +VT+V +F A+ + ++K K++F+
Sbjct: 144 AVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAE--KILLDRLKK-------NPKIEFL 194
Query: 274 LKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
+ V + GD + ++ GE+ LE D V ++ G P T L K +E D
Sbjct: 195 WNSTVKEIV--GDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELL---KGLLELD 249
Query: 332 KMGRIPVNERFATNIPGVYAIGDV 355
+ G I +E T++PGV+A GDV
Sbjct: 250 ENGYIVTDEGMRTSVPGVFAAGDV 273
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 83/274 (30%), Positives = 121/274 (44%), Gaps = 37/274 (13%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFM 273
K +V+IGAG+IGLE LG V +++ I+P S D EI + L + ++
Sbjct: 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELH 209
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
L V + D V+ +K EADVV+V+ G P T L+ G++T K
Sbjct: 210 LNEFVKSLI-GEDKVE-----GVVTDKGEYEADVVIVATGVKPNTE--FLEDTGLKTLKN 261
Query: 334 GRIPVNERFATNIPGVYAIGD-------VIPGPM---LAHKAEEDGVACVEFLAGKHGHV 383
G I V+E T+I +YA GD V + LA A + G E LAG+H
Sbjct: 262 GAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH--- 318
Query: 384 DYDKVPGVVYTHP------EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI 437
G + + E A G TEE+ K+LG++Y+ F N +
Sbjct: 319 --VSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKT-VFIKDKNHTNYYPGQEDLY 375
Query: 438 VKILAEKETDKILGVHIMAPNAGELIHEAVLAIN 471
VK++ E +T ILG I+ AVL I+
Sbjct: 376 VKLIYEADTKVILGGQIIGKKG------AVLRID 403
|
Length = 444 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 3e-15
Identities = 98/332 (29%), Positives = 139/332 (41%), Gaps = 67/332 (20%)
Query: 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 99
A D DV+V+GGGP G AAI AA+ G++T + +R GG L+ I +
Sbjct: 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER--FGGQVLDTMGIEN--------- 256
Query: 100 YHEAMHSFASHGVKFSSV-EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
F SV E + P + A + V + L + +K+ G I
Sbjct: 257 --------------FISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLI 302
Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRIVSST------GALAL 210
EV + G V+K + +I+ATG+ +++ PG DE R G L
Sbjct: 303 ---EV---ELANG-AVLKARTVILATGARWRNMNVPGE--DEYRNKGVAYCPHCDGPLFK 353
Query: 211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA----ADIVPSMDGEIRKQFQRSLE 266
K++ VIG G G+E A + VT++EFA AD V Q L
Sbjct: 354 G---KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAV----------LQDKLR 400
Query: 267 KQKMKFMLKTKVVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL 323
+ T ++ GDG K L GE+ LE + V V G P T L
Sbjct: 401 SLP-NVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL-- 457
Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
K VE ++ G I V+ R TN+PGV+A GD
Sbjct: 458 -KGAVELNRRGEIIVDARGETNVPGVFAAGDC 488
|
Length = 520 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-14
Identities = 82/389 (21%), Positives = 134/389 (34%), Gaps = 103/389 (26%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
V VIG GP G AA A+ G T E+ GG N+ IP
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI--IP---------------- 583
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG---KFISPSE 162
+ +PA + Q D + +VK +G +F +
Sbjct: 584 ------------QFRIPAELIQHD------------------IEFVKAHGVKFEFGCSPD 613
Query: 163 VSVDTIEGGNTVVKG-KNIIIATGSDVKSLPGITIDEKRIVSSTGALA-LNEVP------ 214
++V+ ++ +G +++A G+D + + ++ + L
Sbjct: 614 LTVEQLKN-----EGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLG 668
Query: 215 KKLVVIGAGYIGLEMGSVWARLG--SEVTVV------EFAADIVPSMDGEIRKQFQRSLE 266
K +VV+G G ++ R+ +VTVV E A R++++ +LE
Sbjct: 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAW---------REEYEEALE 719
Query: 267 KQKMKFMLKTKVVGVDLSGDGVKLTLE--------------PAAGGEKTILEADVVLVSA 312
++F D G LT P GE LEAD V+ +
Sbjct: 720 -DGVEFKELLNPESFDADG---TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAI 775
Query: 313 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVAC 372
G T L G+ DK G V+ T++ VY IGDV GP A D
Sbjct: 776 GEQVDTELL--KANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRA 833
Query: 373 VEFLAGKHGHVDYDKVPGVVYTHPEVASV 401
+ + + G + + + E A +
Sbjct: 834 ADAILSREGIRSHQND--KYWNNVEPAEI 860
|
Length = 1019 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 92/334 (27%), Positives = 150/334 (44%), Gaps = 64/334 (19%)
Query: 37 FASASDEN----DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
A+++ E DV+V+GGGP G AAI AA+ GL+T + +R +GG + I +
Sbjct: 202 EAASALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIEN-- 257
Query: 93 LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
L+ + + G + ++ +L + Q + R + + ++ + V
Sbjct: 258 LISVPY----------TTGSQLAA---NLEEHIKQYPIDLMENQR-AKKIETEDGLIVV- 302
Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
T+E G V+K K++I+ATG+ + L G+ +++ I +
Sbjct: 303 --------------TLESGE-VLKAKSVIVATGARWRKL-GVPGEKEYIGKGVAYCPHCD 346
Query: 213 VP----KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA----ADIVPSMDGEIRKQFQRS 264
P K + VIG G G+E A + VTV+EFA AD V K +S
Sbjct: 347 GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKV-----LQDKL--KS 399
Query: 265 LEKQKMKFMLKTKVVGVDLSGDGVKLT---LEPAAGGEKTILEADVVLVSAGRTPFTAGL 321
L + +T + GDG K+T + GE+ L+ D V V G P T L
Sbjct: 400 LPNVDILTSAQTTEI----VGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL 455
Query: 322 GLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
K VE ++ G I ++ER T++PG++A GDV
Sbjct: 456 ---KDAVELNRRGEIVIDERGRTSVPGIFAAGDV 486
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 6e-14
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 22/156 (14%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFM 273
++++V+G G IG E+ R G VT+V+ AA ++ S M E+ + Q L + + +
Sbjct: 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLL 201
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGV 328
LK+++ G++ + G++ TL G +E D V+ +AG P T AGL +++ G
Sbjct: 202 LKSQLQGLEKTDSGIRATL---DSGRS--IEVDAVIAAAGLRPNTALARRAGLAVNR-G- 254
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDV--IPGPMLA 362
I V+ T+ P +YA+GD I G +L
Sbjct: 255 -------IVVDSYLQTSAPDIYALGDCAEINGQVLP 283
|
Length = 377 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 91/345 (26%), Positives = 141/345 (40%), Gaps = 74/345 (21%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DV++IG GP G AI+A + GL IEK G + ++S + Y M
Sbjct: 1 DVIIIGAGPCGLACAIEAQKAGLSYLIIEK-----------GNL-----VNSIYRYPTNM 44
Query: 105 HSFASHGVKFSSVEV----DLPAMMAQKDKAVSNLT----RGIEGLFKKN-----KVTYV 151
F FS+ E +P +++ K N R + FK N +V V
Sbjct: 45 T-F------FSTSERLEIGGIP-FISENPKPTRNEALEYYRRVAERFKLNIRLYEEVLKV 96
Query: 152 KGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVKSLPGITIDEKRIVSSTGALA 209
K G F + + KN+I+ATG D+ +L + ++ VS A
Sbjct: 97 KKTDGGF---------EVTTEKGTYQAKNVIVATGYYDIPNLLNVPGEDLPKVSHYYKEA 147
Query: 210 LNEVPKKLVVIGAGYIGLEMGSVWA-----RLGSEVTVVEFAADIVPSMDGEIRKQFQRS 264
+K+VV+G +V A R G+EVT+V ++ S+ +R +
Sbjct: 148 HPYFGQKVVVVGGSN-----SAVDAALELYRKGAEVTMVHRGDEVSSSVKYWVRPDIENR 202
Query: 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP---FTAGL 321
+++ +K ++V + +TLE GE + D V G P F
Sbjct: 203 IKEGSIKAYFNSRVKEITED----SVTLE-TPDGEVHTIPNDFVFALTGYRPDFEF---- 253
Query: 322 GLDKIGVETDKMGRIPV--NERFATNIPGVYAIGDVIPGPMLAHK 364
L+ +GVE D+ IPV E TN+PG+Y G VI M +K
Sbjct: 254 -LESLGVELDEDTGIPVYNPETMETNVPGLYLAG-VIAAGMDTNK 296
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 4e-13
Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 11/142 (7%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274
K +V+GAGYI LE+ G T++ + I MD ++ + L+K+++ + L
Sbjct: 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRL 208
Query: 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
++ ++ G ++T + +G + D+++ G P + + + ++ D G
Sbjct: 209 NEEIDAIN----GNEVTFK--SGKVEHY---DMIIEGVGTHPNSKFI--ESSNIKLDDKG 257
Query: 335 RIPVNERFATNIPGVYAIGDVI 356
IPVN++F TN+P +YAIGD+I
Sbjct: 258 FIPVNDKFETNVPNIYAIGDII 279
|
Length = 438 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 93/360 (25%), Positives = 144/360 (40%), Gaps = 81/360 (22%)
Query: 127 QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---ISPSEVSVDTIEGGNTVVKGKNIIIA 183
+K +++ +++N +T G + I + V T + G TV K +IIA
Sbjct: 53 AGEKTAEDISLNRNDWYEENGITLYTG--EKVIQIDRANKVV-TTDAGRTVSYDK-LIIA 108
Query: 184 TGSDV-------KSLPGI----TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSV 232
TGS LPG+ TID+ L KK VVIG G +GLE
Sbjct: 109 TGSYPFILPIPGSDLPGVFVYRTIDD-----VEAMLDCARNKKKAVVIGGGLLGLEAARG 163
Query: 233 WARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT 291
LG EVTVV A ++ +D + +R LE +K +L+ ++ G+
Sbjct: 164 LKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNT--EEIVGEDKVEG 221
Query: 292 LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGR-IPVNERFATNIPGV 349
+ A G T + AD+V+++ G P D++ E + R I VN+ T+ P +
Sbjct: 222 VRFADG---TEIPADLVVMAVGIRPN------DELAKEAGLAVNRGIVVNDYMQTSDPDI 272
Query: 350 YAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV---YTHPEVAS---VGK 403
YA+G+ C E KV G+V Y +V + G
Sbjct: 273 YAVGE-----------------CAEH---------RGKVYGLVAPLYEQAKVLADHLCGG 306
Query: 404 TEE---------QVKELGVE-YRVGKFPFLANSRAKAIDDA-EGIVKILAEKETDKILGV 452
E ++K GV+ + G F + + D GI K L K+ DKI+G
Sbjct: 307 EAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKD-DKIVGA 365
|
Length = 793 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 9e-13
Identities = 79/298 (26%), Positives = 128/298 (42%), Gaps = 62/298 (20%)
Query: 180 IIIATGSDVKSLPGITIDEK-----RIVSSTGAL-ALNEVPKKLVVIGAGYIGLEMGSVW 233
+I+ATGS LP D+K R + A+ A+ + KK VIG G +GLE
Sbjct: 100 LILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGL 159
Query: 234 ARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
LG +V+V+ A ++ +D + QR LE++ + F+L+ V++ G +
Sbjct: 160 QNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDT--VEIVGATKADRI 217
Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET--DKMGRIPVNERFATNIPGVY 350
G + LEAD+++++AG P D++ V I VN+ T+ P +Y
Sbjct: 218 RFKDG---SSLEADLIVMAAGIRP------NDELAVSAGIKVNRGIIVNDSMQTSDPDIY 268
Query: 351 AIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASV----GKTEE 406
A+G+ AE +G +G V P Y +V + + EE
Sbjct: 269 AVGEC---------AEHNGRV--------YGLV----APL--YEQAKVLADHICGVECEE 305
Query: 407 --------QVKELGVEYRVGKF-PFLANSRAKAI---DDAEGIVKILAEKETDKILGV 452
++K LGV+ V R +I D+ +GI K L + DK+LG
Sbjct: 306 YEGSDLSAKLKLLGVD--VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSD-DKLLGA 360
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 83/370 (22%), Positives = 144/370 (38%), Gaps = 93/370 (25%)
Query: 46 VVVIGGGPGGYVAAIKAAQ--LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA 103
+V++GGG GG AA + A+ ++ T +++ H++
Sbjct: 6 IVILGGGFGGLSAAKRLARKLPDVEITLVDR--------------------RDYHLFTPL 45
Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGL-FKKNKVTYVKGYGKFISPSE 162
++ A+ + S + + L A++ + V + + + KVT E
Sbjct: 46 LYEVATGTLSESEIAIPLRALLRKSGN-VQFVQGEVTDIDRDAKKVTLADL-------GE 97
Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGI-----------TIDE-----KRIVSSTG 206
+S D + ++A GS + GI T+++ + ++ +
Sbjct: 98 ISYDYL------------VVALGS-ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFE 144
Query: 207 ALALNEVPKKL---VVIGAGYIGLEM-GSVWARLGS------------EVTVVEFAADIV 250
+ E + L V++G G G+E+ G + RL V +VE I+
Sbjct: 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204
Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310
P ++ K +R+LEK ++ +L T V V DGV L GE+ I AD V+
Sbjct: 205 PMFPPKLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTL-----KDGEEEI-PADTVVW 256
Query: 311 SAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDV------IPGPMLAH 363
+AG L D G+ETD+ GR+ VN P ++A GD P P A
Sbjct: 257 AAGVRASP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQ 314
Query: 364 KAEEDGVACV 373
A + G
Sbjct: 315 AAHQQGEYAA 324
|
Length = 405 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 85/362 (23%), Positives = 126/362 (34%), Gaps = 101/362 (27%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
S + V VIG GP G A A+ G T EK+ GG N+ IP
Sbjct: 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI--IP----------- 581
Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KF-- 157
E + A QKD + VK +G +F
Sbjct: 582 -----------------EFRISAESIQKD------------------IELVKFHGVEFKY 606
Query: 158 -ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALA------- 209
SP +++V ++ K +I+A G+ + +R++ S L
Sbjct: 607 GCSP-DLTVAELKNQGY----KYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPT 661
Query: 210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-------VPSMDGEIRKQFQ 262
+N + K +VV+G G ++ AR V VE + +P+ E+ + +
Sbjct: 662 INPLGKHVVVVGGGNTAMDA----ARAALRVPGVEKVTVVYRRTKRYMPASREELEEALE 717
Query: 263 RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE--------------PAAGGEKTILEADVV 308
+ K +L S + LT E P GE L AD V
Sbjct: 718 ---DGVDFKELLSP------ESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTV 768
Query: 309 LVSAGRTPFTAGLGLDKIGVETDKMGRIPVN-ERFATNIPGVYAIGDVIPGPMLAHKAEE 367
+ + G T L K G+ D+ G VN TNI V+ IGD GP +A
Sbjct: 769 IAAVGEQVDTDLL--QKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIA 826
Query: 368 DG 369
DG
Sbjct: 827 DG 828
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 13/175 (7%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--VPSMDGEIRKQFQRSLEKQKM-- 270
KK+VV+GAG ++ LG+E + + I P+ EI + R +E ++
Sbjct: 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVT 232
Query: 271 --KFMLKTKVVGVDLS------GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG 322
+ + + +V GV+L+ D G + +LEAD V+ + G P T
Sbjct: 233 PVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP-TPPFA 291
Query: 323 LDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377
+ +G+E ++ G I V+E+ T+ GV+A GDV+ GP KA + G+ + +
Sbjct: 292 KECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIH 346
|
Length = 352 |
| >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 84/343 (24%), Positives = 122/343 (35%), Gaps = 94/343 (27%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D+++IGGGP G A I A + L T IEK GG
Sbjct: 6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQ----------------------- 41
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFISPSEV 163
+ +S V+ P ++ + R + +G KF+ +
Sbjct: 42 -------ITITSEVVNYPGILNTTGPELMQEMR-----------QQAQDFGVKFLQAEVL 83
Query: 164 SVD------TIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRIVSS---------TG 206
VD TI+ K ++IATG+ + L PG R V+ TG
Sbjct: 84 DVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTG 143
Query: 207 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ 262
+ VIG G+ E R S+VTV+ +F + + +
Sbjct: 144 --------MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIA---------E 186
Query: 263 RSLEKQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADV------VLVSAGR 314
+ K++ T++ +GD GE T +A V V G
Sbjct: 187 KVKNHPKIEVKFNTELKEA--TGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY 244
Query: 315 TPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357
P + L K VE DK G IP NE TN+PGVYA GD+ P
Sbjct: 245 APSSE---LFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRP 284
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 |
| >gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
DVVV+GGGP G AAI AA+LG K +E+RG LGG
Sbjct: 1 DVVVVGGGPAGVAAAIAAARLGAKVLLVERRGWLGGM 37
|
This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 9e-10
Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 17/183 (9%)
Query: 180 IIIATGSDVKSLPGITIDEKRIVS---STGALALNEVPKK---LVVIGAGYIGLEMGSVW 233
+ IATG+ + LP + +R + + A L EV + +V++GAG IGLE+ +
Sbjct: 104 LFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASA 163
Query: 234 ARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTL 292
+ +VTV+E AA ++ +++ +Q ++ +L + V + G+ V+LTL
Sbjct: 164 TQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHV-VDGEKVELTL 222
Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352
+ GE ADVV+ G L + ++T I ++E T P ++A
Sbjct: 223 QS---GETLQ--ADVVIYGIG-ISANDQLAREA-NLDTA--NGIVIDEACRTCDPAIFAG 273
Query: 353 GDV 355
GDV
Sbjct: 274 GDV 276
|
Length = 396 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 19/162 (11%)
Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
K +VVIG G ++ RLG+EV + + E + E K
Sbjct: 270 YAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEE--EGVKFH 327
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPA---------------AGGEKTILEADVVLVSAGRTP 316
F+ + + D G+ + G + LEAD V+V+ G
Sbjct: 328 FLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGS 387
Query: 317 FTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
+ + ++T + G I V+E T+IPGV+A GD+I G
Sbjct: 388 --NPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILG 427
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA- 103
DV+VIGGG G AA+ AA++G K I T + C PS + H+ E
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLI---THNTDTIAELSCNPSIGGIAKGHLVREID 57
Query: 104 -----MHSFA-SHGVKFSSV-EVDLPAMMA---QKDKA--VSNLTRGIEGLFKKNKVTYV 151
M A G++F + PA+ A Q D+ +T +E +T +
Sbjct: 58 ALGGLMGKAADKTGIQFRMLNTSKGPAVRALRAQVDRDLYSKEMTETLENH---PNLTLI 114
Query: 152 KGYGKFISPSEVSVDTIEG-GNTVVKGKNIIIATGSDVKSLPGI 194
+G + P V + K K +++ATG+ + I
Sbjct: 115 QGEVTDLIPENGKVKGVVTEDGEEYKAKAVVLATGTFLNGKIHI 158
|
Length = 391 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-08
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FATNIPGVYA 351
EP G E +L AD+VL++ G T AGL L + GVE D+ GR+ + + T+ P V+A
Sbjct: 378 EPVEGSEF-VLPADLVLLAMGFTGPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFA 435
Query: 352 IGDVIPGPMLAHKAEEDG----VACVEFLAGK 379
GD+ G L A +G A +L G
Sbjct: 436 AGDMRRGQSLVVWAIAEGRQAARAIDAYLMGS 467
|
Length = 471 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 45/212 (21%), Positives = 74/212 (34%), Gaps = 30/212 (14%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA 103
DV +IG G G AA Q G+ EKR +GGT P L +
Sbjct: 10 DVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT-WRYNRYPGLRLDSPKWLLG-- 66
Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNL-----TRGIEGLFKKNKVTYVKGYGKFI 158
F + KD L I + + + ++
Sbjct: 67 -FPFLP-----FRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRW- 119
Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSD----VKSLPGITIDEKRIVSS---TGALALN 211
+V T +GG + +++ATG + G+ + RI+ S L
Sbjct: 120 -----TVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDL- 173
Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 243
K+++VIGAG +++ A +G+ VT+
Sbjct: 174 -RGKRVLVIGAGASAVDIAPELAEVGASVTLS 204
|
Length = 443 |
| >gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-07
Identities = 52/152 (34%), Positives = 68/152 (44%), Gaps = 29/152 (19%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA----ADIVPSMDGEIRKQFQRSLEKQK- 269
K++ VIG G G+E A + VTV+EFA AD V Q L
Sbjct: 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQV----------LQDKLRSLPN 401
Query: 270 ---MKFMLKTKVVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL 323
+ T+V GDG K LT + GE+ LE + V V G P T L
Sbjct: 402 VTIITNAQTTEVT-----GDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL-- 454
Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
K VE ++ G I V+ R AT++PGV+A GD
Sbjct: 455 -KGTVELNRRGEIIVDARGATSVPGVFAAGDC 485
|
Length = 517 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA----ADIVPSMDGEIRKQFQRSLEKQKM 270
K+ V+G G +GLE LG E V+EFA A+ + M GE Q +R +E +
Sbjct: 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGE---QLRRKIESMGV 202
Query: 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI---- 326
+ + + G + T+ A G E LE D ++ S G P DK+
Sbjct: 203 RVHTSKNTLEIVQEGVEARKTMRFADGSE---LEVDFIVFSTGIRP------QDKLATQC 253
Query: 327 GVETDKMGRIPVNERFATNIPGVYAIGD 354
G+ G I +N+ T+ P +YAIG+
Sbjct: 254 GLAVAPRGGIVINDSCQTSDPDIYAIGE 281
|
Length = 847 |
| >gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 86/350 (24%), Positives = 139/350 (39%), Gaps = 65/350 (18%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPS----KALLHSSHMYH 101
V VIG GP G A A+ G++ ++ +GG L G IPS KA+L
Sbjct: 144 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGL-LTFG-IPSFKLDKAVLSRRREIF 201
Query: 102 EAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
AM G++F + EV +D ++ +L + +F TY G P
Sbjct: 202 TAM------GIEFHLNCEVG-------RDISLDDLLEDYDAVFL-GVGTYRSMRGGL--P 245
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
E V++ +IA + LP E+ ++ G K++VV+
Sbjct: 246 GE-------DAPGVLQALPFLIANTRQLMGLP--ESPEEPLIDVEG--------KRVVVL 288
Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
G G ++ RLG+ + D +M G R++ + E + ++F+ + V
Sbjct: 289 GGGDTAMDCVRTAIRLGAASVTCAYRRDEA-NMPGS-RREVANARE-EGVEFLFNVQPVY 345
Query: 281 VDLSGD----GVKLTL----EPAAGGEKT---------ILEADVVLVSAGRTPFTAGLGL 323
++ D GV L EP A G + +L ADVV+++ G P L
Sbjct: 346 IECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW-L 404
Query: 324 DKIGVETDKMGRIPVNE----RFATNIPGVYAIGDVIPGPMLAHKAEEDG 369
G+ D GRI + + T P ++A GD + G L A +G
Sbjct: 405 AGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEG 454
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467 |
| >gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
DVVVIG G G AA A+ GLK T +EK +GG
Sbjct: 5 DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40
|
Length = 487 |
| >gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
DVVVIG G G AA++AA+ GLK +EK GG
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGA 37
|
This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 46/175 (26%)
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSE-VTVV---------------EFAADIVPSMDG- 255
V K++VVIG G ++ RLG+E VT+V E A + +G
Sbjct: 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKE-----EGV 326
Query: 256 EIR--KQFQRSLEKQK----MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309
E L + ++F ++ ++ D SG P G E T L AD+V+
Sbjct: 327 EFEWLAAPVEILGDEGRVTGVEF-VRMELGEPDASGRRR----VPIEGSEFT-LPADLVI 380
Query: 310 VSAGRTPF------TAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
+ G+TP T GL L++ G I +E T++PGV+A GD++ G
Sbjct: 381 KAIGQTPNPLILSTTPGLELNRWG------TIIADDETGRTSLPGVFAGGDIVTG 429
|
Length = 457 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 43/174 (24%)
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVV------EFAADIVPSMDGEIRKQFQRSLE 266
V KK+ V+G G + ++ RLG+EV +V E A R + +
Sbjct: 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA----------RVEEVHHAK 329
Query: 267 KQKMKFMLKT-----------KVVGVDLSGDGVKLTL-EPAAGG---------EKTILEA 305
++ + F L T V G+ +K+ L EP A G + +LE
Sbjct: 330 EEGVIFDLLTNPVEILGDENGWVKGMKC----IKMELGEPDASGRRRPVEIEGSEFVLEV 385
Query: 306 DVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDVIPG 358
D V++S G +P K G++ +K G I +E T+ GV+A GD + G
Sbjct: 386 DTVIMSLGTSPNPLISSTTK-GLKINKRGCIVADEETGLTSKEGVFAGGDAVTG 438
|
Length = 464 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 20/157 (12%)
Query: 207 ALALNEVPKKLVVIGAGYIGLEM-GSVWARLGS-----EVTVVEFAADIVPSMDGEIRKQ 260
+ K+L V+G G G+E+ ++ RL +VT++ A ++P ++R+
Sbjct: 138 SADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLLPGFPAKVRRL 196
Query: 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320
R L ++ ++ V + L + L AD +L + G
Sbjct: 197 VLRLLARRGIEVHEGAPVTRG--PDGALIL-------ADGRTLPADAILWATGARAPPW- 246
Query: 321 LGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDVI 356
L + G+ D+ G + V+ + + P V+A GD
Sbjct: 247 --LAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCA 281
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
E DVVVIGGG G AAI+AA+ GLK + K G
Sbjct: 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44
|
Length = 562 |
| >gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79
E DVV++G GP G AA + A+ GL +EK G
Sbjct: 1 MMEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPG 39
|
Length = 396 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYA 351
G EKT AD V+++ G L + G++ DK GRI V+E T+IPGV+A
Sbjct: 363 VGVIGTEKTD-AADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFA 421
Query: 352 IGDVIPGPMLAHKAEEDGVACVEF 375
GD + G L A +G +
Sbjct: 422 GGDAVRGAALVVWAIAEGREAAKA 445
|
Length = 457 |
| >gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79
DV+VIGGG G +AAI AA+ G + I+K LG
Sbjct: 2 DVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLG 36
|
Length = 405 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 55/203 (27%), Positives = 83/203 (40%), Gaps = 48/203 (23%)
Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE---------- 239
SLP +++E++ + VV+G G G+E + A +
Sbjct: 161 SLPTTSVEERKRLLHF------------VVVGGGPTGVEFAAELADFFRDDVRNLNPELV 208
Query: 240 ----VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA 295
VTV+E ++++ S D +RK QR L + + KT V V V L
Sbjct: 209 EECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEV--LDKEVVLK---- 262
Query: 296 AGGEKTILEADVVLVSAG--RTPFTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYAI 352
GE ++ +V+ S G P T L +DK GRI V++ IP V+A+
Sbjct: 263 -DGE--VIPTGLVVWSTGVGPGPLTKQLKVDK-----TSRGRISVDDHLRVKPIPNVFAL 314
Query: 353 GDV-----IPGPMLAHKAEEDGV 370
GD P P LA A + GV
Sbjct: 315 GDCAANEERPLPTLAQVASQQGV 337
|
Length = 424 |
| >gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
E DV ++G GP G AA A+ GLK E++ + GG
Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62
|
Length = 257 |
| >gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
A E DVVV+G G G VAA+ AA GL T +EK GG+
Sbjct: 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45
|
Length = 557 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLG-SEVTVV-EFAADIVPSMDGEIRKQFQRSLEKQKM 270
+ K++VVIG G ++ RLG EVT+V + +P+ D EI + + E ++
Sbjct: 266 LGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALR---EGVEI 322
Query: 271 KFMLKTKVVGVDLSGDGVKLTLEPAAG------------GEKTILEADVVLVSAGRTPFT 318
++ + D +G + GE+ LEAD+V+++ G+ +
Sbjct: 323 NWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDS 382
Query: 319 AGLGLDKIGVETDKMGRIPVNERFA-TNIPGVYAIGDVIPGPMLAHKA 365
AGL + + G + V+ F T PGV+A GD++PGP A
Sbjct: 383 AGL--ESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTA 428
|
Length = 564 |
| >gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 81/341 (23%), Positives = 126/341 (36%), Gaps = 69/341 (20%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
V + G GP G AA + G+ T E +GG L G IPS L + +
Sbjct: 433 VAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGV-LQYG-IPSFRL--PRDIIDREVQ 488
Query: 106 SFASHGVKFSSVEV-----DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
GVK + +V +P +M +G + +F + G F+
Sbjct: 489 RLVDIGVKIETNKVIGKTFTVPQLMND---------KGFDAVF----LGVGAGAPTFLGI 535
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
+ N + N++ G D I + K +VVI
Sbjct: 536 PGEFAGQVYSANEFLTRVNLM---GGDKFPFLDTPI---------------SLGKSVVVI 577
Query: 221 GAGYIGLEMGSVWARLGSEVT--VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
GAG ++ V RLG+ V + P+ EIR + ++ F L + V
Sbjct: 578 GAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDF----FFLHSPV 633
Query: 279 -VGVDLSGD--GVKLT------------LEPAAGGEKTILEADVVLVSAGRTP------F 317
+ VD G G+K+ +P GE LE D V+ + G
Sbjct: 634 EIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQS 693
Query: 318 TAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
T GL L+K G G++ + +TN+PGV+A GD++ G
Sbjct: 694 TPGLALNKWGNIAADDGKLESTQ--STNLPGVFAGGDIVTG 732
|
Length = 1006 |
| >gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 80/303 (26%)
Query: 47 VVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTCLNV--GCIPSKALLHS 96
++IGGG G +AAI AA+ GL +EK +G G C N+ C + + +
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRC-NLTNSCPTPEFVAYY 59
Query: 97 SHMYHEAMHSFASHGVK-----FSSVEVDLPA-----MMAQKDKAVSNLTRGIEGLFKKN 146
+ + K F S+ ++L + D A +++ + K+
Sbjct: 60 PRNGKFLRSALSRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSA-ADVLDALLNELKEL 118
Query: 147 KV-----TYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATG--------SD------ 187
V + VK I + +E + +IIATG S
Sbjct: 119 GVEILTNSKVKS----IKKDDGGFG-VETSGGEYEADKVIIATGGLSYPQLGSTGDGYEI 173
Query: 188 -----------VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIG---------- 226
V +L +T+DE + +G ++L+ V +V G +
Sbjct: 174 AESLGHTIVPPVPALVPLTLDESFLKELSG-ISLDGV-VLSLVNGKKVLEEFGDLLFTHF 231
Query: 227 -------LEMGSVWARLGSEVTVVEFAADIVPSMD-GEIRKQFQRSLE---KQKMKFMLK 275
L++ + AR + VE D++P + E+ ++ +R + K+ +K +LK
Sbjct: 232 GLSGPAILDLSAFAARALLKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILK 291
Query: 276 TKV 278
+
Sbjct: 292 GLL 294
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLG------SEVTVV--EFAADIVPSMDGEIRKQFQR 263
++P+ LVVIG G + +++ ARL V V E + +P+ EI + +
Sbjct: 416 KIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEE 475
Query: 264 SL-------------EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG-GEKTILEADVVL 309
+ E K+K + K V V +G P ++ I+EAD+V+
Sbjct: 476 GVVIYPGWGPMEVVIENDKVKGVKFKKCVEV-FDEEG---RFNPKFDESDQIIVEADMVV 531
Query: 310 VSAGRTPFTAGLGLD-KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAH 363
+ G+ P + L + K +E + GRI NE T+IP ++A GD++ GP + H
Sbjct: 532 EAIGQAPDYSYLPEELKSKLEFVR-GRILTNEYGQTSIPWLFAGGDIVHGPDIIH 585
|
Length = 604 |
| >gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
E DV+VIG G G AA+ AA GLK +E+ +GGT
Sbjct: 11 ERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54
|
Length = 578 |
| >gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
V+VIGGG G AA++ A +G K +EK ++GG
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162
|
Length = 622 |
| >gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 2e-04
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 48 VIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82
++G G G VAA A+ G +EKR +GG
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNA 35
|
Length = 66 |
| >gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
+ DV+VIG G GG AAI A +LGL +EK GGT
Sbjct: 4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47
|
Length = 574 |
| >gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
E DV+VIG G G AA+ AA GLK +EK GGT
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50
|
Length = 581 |
| >gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79
DV++IGGGP G +AAI AA+ G + I+K LG
Sbjct: 5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLG 39
|
Length = 408 |
| >gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
E+DV+++G GP G AA A+ GLK E++ + GG
Sbjct: 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67
|
Length = 262 |
| >gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
DVVV+G G GG AA+ AA GL+ +EK+ +GG+
Sbjct: 8 DVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44
|
Length = 557 |
| >gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCI 88
DV+V+G G GG AA+ AA GL T +EK GG T L+ G I
Sbjct: 13 DVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGI 57
|
Length = 584 |
| >gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
V+V+GGGP G AA AA+ G + T E+ LGG
Sbjct: 382 VLVVGGGPAGLEAAATAARRGHRVTLFEREDRLGG 416
|
The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 25/163 (15%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVV-EFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
KK+ V+G G ++ RLG+E VT+V + + +P+ R + + +++ ++F
Sbjct: 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-----RLEEVKHAKEEGIEF 625
Query: 273 MLKTKVVGVDLSGDG-------VKLTL-EPAAGGEKT---------ILEADVVLVSAGRT 315
+ + G K+ L EP A G + ++ D+V+VS G +
Sbjct: 626 LTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685
Query: 316 PFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
P G+E ++ G I V+E ++IPG+YA GD++ G
Sbjct: 686 PNPLVPSSIP-GLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727
|
Length = 752 |
| >gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
VVIG G GG AI+ A G+ T +E+R GG
Sbjct: 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502 |
| >gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
DE DVVV+G G G AAI+AA G + +E+ GG
Sbjct: 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58
|
Length = 492 |
| >gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCI-EKRGAL 78
DV+VIGGG G AA+ AA+ G + + + +GAL
Sbjct: 4 DVLVIGGGLAGLTAALAAAEAGKRVALVAKGQGAL 38
|
Length = 422 |
| >gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
DVVV+G G GG AA+ AA G K +EK GG
Sbjct: 10 DVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45
|
Length = 572 |
| >gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.002
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
+A D DV+V+GGGP G AAI AA+ G++T + +R GG
Sbjct: 207 NAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGG 246
|
Length = 517 |
| >gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 81/348 (23%), Positives = 134/348 (38%), Gaps = 61/348 (17%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
V VIG GP G A A+ G++ ++ +GG L G P K + +
Sbjct: 313 VAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-LTFGIPPFKL---DKTVLSQRRE 368
Query: 106 SFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
F + G+ F + E+ +D S+LT + +F V YG +
Sbjct: 369 IFTAMGIDFHLNCEIG-------RDITFSDLTSEYDAVF-----IGVGTYGMMRADLPH- 415
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
E V++ + A + LP +E + G K++VV+G G
Sbjct: 416 ----EDAPGVIQALPFLTAHTRQLMGLP--ESEEYPLTDVEG--------KRVVVLGGGD 461
Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRK---------QFQRSLEKQKMKFMLK 275
++ RL + + D V SM G ++ +FQ +++ Q +
Sbjct: 462 TTMDCLRTSIRLNAASVTCAYRRDEV-SMPGSRKEVVNAREEGVEFQFNVQPQYIACDED 520
Query: 276 TKVVGVDL-------SGDGVKLTLEPAAGGEKTILEADVVLVSAG----RTPFTAGLG-- 322
++ V L G + P AG E L ADV++++ G P+ G G
Sbjct: 521 GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFE-LPADVLIMAFGFQAHAMPWLQGSGIK 579
Query: 323 LDKIG-VETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG 369
LDK G ++T +G +P T++ V+A GD + G L A G
Sbjct: 580 LDKWGLIQTGDVGYLPTQ----THLKKVFAGGDAVHGADLVVTAMAAG 623
|
Length = 639 |
| >gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLH--SSHMYH 101
D +++G G G V A AQL + +EKR +GG C + L H H++H
Sbjct: 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVD--ETILFHQYGPHIFH 59
|
This enzyme is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate. It contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 377 |
| >gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77
DV ++G GP G A+ A+ GL T +E+
Sbjct: 4 DVAIVGAGPAGLALALALARAGLDVTLLERAPR 36
|
Length = 387 |
| >gnl|CDD|145231 pfam01946, Thi4, Thi4 family | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
E+DVV++G GP G AA A+ GLK IE+ + GG
Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGG 54
|
This family includes a putative thiamine biosynthetic enzyme. Length = 229 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 507 | |||
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 100.0 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 100.0 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.98 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.98 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.98 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.97 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.97 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.97 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.97 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.96 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.96 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.96 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.96 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.95 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.95 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.94 | |
| PF02852 | 110 | Pyr_redox_dim: Pyridine nucleotide-disulphide oxid | 99.92 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.89 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.89 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.85 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.84 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.83 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.82 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.82 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.81 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.8 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.79 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.78 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.76 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.74 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.74 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.64 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.63 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.62 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.49 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 99.44 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.43 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 99.36 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 99.36 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.36 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.34 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 99.34 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.33 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 99.31 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 99.31 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.3 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 99.3 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 99.29 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.29 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 99.25 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 99.25 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 99.24 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 99.23 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.23 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 99.23 | |
| PLN02815 | 594 | L-aspartate oxidase | 99.23 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 99.23 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.22 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.21 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.21 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 99.21 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 99.2 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.19 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 99.18 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 99.17 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.17 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.16 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 99.12 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 99.12 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 99.1 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 99.07 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 99.03 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.01 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.99 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.96 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.94 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.91 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.88 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.88 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.87 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.86 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.85 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.85 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.84 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.84 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.83 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.83 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.82 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.82 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.82 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.81 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.81 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.8 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.78 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.78 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.78 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.78 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.78 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.77 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.77 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.75 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.75 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.75 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.75 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.74 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.74 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.72 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.7 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.69 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.69 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.69 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.69 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.68 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.68 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.68 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.67 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.67 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.67 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.66 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.66 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.66 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.65 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.65 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.65 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.64 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.64 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.64 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.63 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.63 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.62 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.61 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.61 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.6 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.6 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.6 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.6 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.6 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.6 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.59 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.59 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.58 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.57 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 98.57 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.57 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.56 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.56 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.55 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.54 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.54 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.53 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.52 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.51 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.49 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.47 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 98.45 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.45 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 98.44 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.44 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.44 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.43 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.43 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.43 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.43 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.42 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.42 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 98.42 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.42 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.41 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.41 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.41 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.41 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.4 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.4 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.4 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.39 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.39 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.37 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.36 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.36 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.36 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.35 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.35 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.34 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.34 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.33 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.31 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.31 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.3 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.3 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.28 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.28 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.27 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.27 | |
| PLN02985 | 514 | squalene monooxygenase | 98.27 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.26 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.26 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 98.25 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 98.23 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.23 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.22 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.22 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.22 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 98.22 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.21 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.19 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.18 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 98.17 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 98.16 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.16 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.15 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.15 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.14 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.14 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 98.14 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.13 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.13 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.13 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.12 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.12 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 98.11 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.11 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.11 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.11 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 98.09 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 98.09 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.09 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.08 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.07 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.06 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.06 | |
| PLN02268 | 435 | probable polyamine oxidase | 98.05 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 98.05 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.05 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.05 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 98.04 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.04 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 98.04 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.03 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.03 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.03 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.02 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.02 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.01 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.01 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.01 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.0 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.97 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.97 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.97 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.97 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.96 | |
| PLN02568 | 539 | polyamine oxidase | 97.96 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.96 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.96 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.95 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.94 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.94 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.94 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.93 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.93 | |
| PLN02507 | 499 | glutathione reductase | 97.93 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.93 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.92 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.91 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.91 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.91 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.9 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.9 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.88 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.88 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 97.88 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.87 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.87 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 97.87 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.86 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.86 | |
| PLN02676 | 487 | polyamine oxidase | 97.85 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.85 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.83 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 97.82 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.81 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.81 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.81 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.81 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.81 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.81 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.81 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.8 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.8 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.79 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.79 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.79 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.78 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.77 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.76 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.76 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.76 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.75 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.75 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.73 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.73 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.72 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.71 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.7 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.69 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.68 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.67 | |
| PLN02612 | 567 | phytoene desaturase | 97.67 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.66 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.66 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.65 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.64 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 97.64 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 97.63 | |
| PLN02546 | 558 | glutathione reductase | 97.63 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.63 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.62 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.61 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.6 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.59 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.57 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.56 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.55 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.55 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 97.55 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.54 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.53 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.51 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.5 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.5 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.49 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.49 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.49 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 97.48 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.47 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.47 | |
| PLN03000 | 881 | amine oxidase | 97.46 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.46 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.43 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.43 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 97.42 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 97.39 | |
| PLN02976 | 1713 | amine oxidase | 97.39 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.38 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.38 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.34 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.29 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.29 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.25 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.25 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.24 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.22 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.22 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 97.22 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.21 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 97.21 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.14 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.13 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.12 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.12 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.11 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.09 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 97.09 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 97.06 | |
| PLN02985 | 514 | squalene monooxygenase | 97.05 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.05 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.03 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.97 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 96.96 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 96.92 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 96.88 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.83 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.8 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 96.74 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 96.62 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 96.6 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 96.59 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.58 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.52 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 96.52 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 96.52 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.52 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.45 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 96.43 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 96.41 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.39 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.38 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 96.31 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 96.3 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 96.3 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.3 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.26 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.26 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 96.22 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 96.18 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 96.16 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 96.11 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 96.09 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 96.08 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 96.04 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 96.02 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.02 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.01 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 96.01 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 95.98 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 95.86 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 95.85 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 95.85 | |
| PLN02815 | 594 | L-aspartate oxidase | 95.82 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.73 | |
| PF00996 | 438 | GDI: GDP dissociation inhibitor; InterPro: IPR0182 | 95.7 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 95.57 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 95.52 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.52 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 95.51 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 95.49 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 95.48 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.42 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 95.36 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 95.31 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 95.2 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 95.15 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 95.12 | |
| PF01593 | 450 | Amino_oxidase: Flavin containing amine oxidoreduct | 94.92 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 94.82 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.78 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.64 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 94.63 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 94.56 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 94.52 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 94.51 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.51 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.47 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 94.43 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 94.42 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 94.4 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 94.39 |
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-88 Score=618.58 Aligned_cols=502 Identities=68% Similarity=1.052 Sum_probs=469.6
Q ss_pred hhhHHHhhhhhhccccccccccceeeeeeccccccCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 3 MASLARRKAYVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
|-+..||....++.. +....+.......+.|.|.....+|||+|||+||+|..||++++++|++.+.||++..+||+|
T Consensus 1 ~~~~~rr~~~~~~~~--~~~~~~~~~~~~~~~r~fa~~~~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTc 78 (506)
T KOG1335|consen 1 MQSGLRREASLFSTS--NQLPMGANRFIFSSKRSFASSANDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTC 78 (506)
T ss_pred Ccchhhheeeeeecc--CcCccchhhhhhhhhhhhhccCccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCcee
Confidence 345567766666655 333333333444455557777788999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhHHHHHHHh-hhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCC
Q 010573 83 LNVGCIPSKALLHSSHMYHEAMH-SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS 161 (507)
Q Consensus 83 ~~~~~~p~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 161 (507)
++.||+||+.+++.++.|+...+ .+.+.|+......+|.+.++..++..+.++...++..+++++|+++.|...+++++
T Consensus 79 LnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~ 158 (506)
T KOG1335|consen 79 LNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN 158 (506)
T ss_pred eeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc
Confidence 99999999999999999999888 78889999888999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeE
Q 010573 162 EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241 (507)
Q Consensus 162 ~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vt 241 (507)
.+.+...||+...+.++++|+||||.-.++||...++..+.++..++.+.+.|++++|||+|.+|+|++..+.++|.+||
T Consensus 159 ~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT 238 (506)
T KOG1335|consen 159 KVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVT 238 (506)
T ss_pred eEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEE
Confidence 99999999988999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred EEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 242 lv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+++..+++.+.+|.++++.+++.|.++|++|++++.++..+.+++ .+.+++++..++..++++||.+++++|++|.+..
T Consensus 239 ~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 239 VVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred EEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccC
Confidence 999999999999999999999999999999999999999988776 7788888888888899999999999999999999
Q ss_pred CCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeee
Q 010573 321 LGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400 (507)
Q Consensus 321 l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~ 400 (507)
|++++.|++.|.+|++.||..++|.+|+||+|||+..+|++++.|..||..+.+.|.+.....+|..+|.+.|++|+++|
T Consensus 319 Lgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvaw 398 (506)
T KOG1335|consen 319 LGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAW 398 (506)
T ss_pred CChhhcccccccccceeccccccccCCceEEecccCCcchhhhhhhhhchhheeeecccCcccccCCCCceeecccceee
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred ecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHh
Q 010573 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIA 480 (507)
Q Consensus 401 vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~ 480 (507)
||+||+++++.|++|+++++||..+.|+....+.+||+|+++|+++++|||+||+|++|.|+|+..++||..|.+.+|++
T Consensus 399 VG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDva 478 (506)
T KOG1335|consen 399 VGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVA 478 (506)
T ss_pred eccchhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCCCChHHHHHHHHHHhcc-CCCC
Q 010573 481 RVCHAHPTMSEALKEAAMATHD-KPIH 506 (507)
Q Consensus 481 ~~~~~~p~~~~~~~~~~~~~~~-~~~~ 506 (507)
..+++|||+||+|+++.+++-. ++.|
T Consensus 479 rvchaHPTlSEa~kEa~~aA~~~k~Ih 505 (506)
T KOG1335|consen 479 RVCHAHPTLSEAFKEANMAAYDGKPIH 505 (506)
T ss_pred hccCCCCcHHHHHHHHHHHhhccCCCC
Confidence 9999999999999999888765 5544
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-86 Score=650.10 Aligned_cols=452 Identities=53% Similarity=0.831 Sum_probs=420.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
+.+||++|||+||||..||.++++.|.+|+|||+...+||+|+|.||+|+|.+++.+..+..+.+.-..+|+......++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 45699999999999999999999999999999997799999999999999999999999887776533678877766899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCce
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~ 200 (507)
|.++..+++.....+....+.+++.++|+++.|.+.+.+++++.|... +.+++.+|++||||||+|..+|....++..
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~--~~~~~~a~~iiIATGS~p~~~~~~~~~~~~ 159 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE--DKETITADNIIIATGSRPRIPPGPGIDGAR 159 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC--CceEEEeCEEEEcCCCCCcCCCCCCCCCCe
Confidence 999999999988888888999999999999999999999999999865 348999999999999999888877777888
Q ss_pred EecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
++++++.+.+.+.|++++|||+|++|+|+|..|+++|++||++++.++++|.+|+++++.+.+.|++.|+++++++.+++
T Consensus 160 ~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~ 239 (454)
T COG1249 160 ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA 239 (454)
T ss_pred EEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEE
Confidence 99999987777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
++..++++.+++++. +..++++|.+++|+|++||++.|++++.|++++++|+|+||+.++|++|||||+|||++.++
T Consensus 240 ~~~~~~~v~v~~~~g---~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~ 316 (454)
T COG1249 240 VEKKDDGVLVTLEDG---EGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM 316 (454)
T ss_pred EEecCCeEEEEEecC---CCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc
Confidence 988777777777632 22279999999999999999999999999999999999999888899999999999999999
Q ss_pred cHhHHHHHHHHHHHHHcC-CCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEE
Q 010573 361 LAHKAEEDGVACVEFLAG-KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (507)
+++.|.+||++||+||++ .....+|..+|+++|++|++++||+||+|+++.+.++++.+++|....++....++.||+|
T Consensus 317 Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~K 396 (454)
T COG1249 317 LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVK 396 (454)
T ss_pred cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEE
Confidence 999999999999999997 4456789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 440 ILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 440 ~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
+++|+++++|||+|++|++|.|+|+.++++|+++++.+++..++++|||++|++.+++
T Consensus 397 lv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~ 454 (454)
T COG1249 397 LVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 (454)
T ss_pred EEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999998764
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-78 Score=615.89 Aligned_cols=462 Identities=46% Similarity=0.711 Sum_probs=417.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
+.+|||+||||||||++||..|++.|++|+|||+.+.+||+|++.||+|+|.++.....++... .+..+|+......++
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~-~~~~~g~~~~~~~~~ 80 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAK-ALAEHGIVFGEPKID 80 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHh-hhhhcCcccCCCCcC
Confidence 4569999999999999999999999999999999778999999999999999998888777664 456678877777899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCce
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~ 200 (507)
|..+..+++..+.++...+..++++.+|+++.+.+.+++++.+.|...+|+..++.||+||||||++|..+|+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~ 160 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPR 160 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCc
Confidence 99999999999999888888899999999999999999999988887666456899999999999999765655444556
Q ss_pred EecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
++++.+.+.+...+++++|||+|++|+|+|..|.++|.+||++++.+++++.+|+++.+.+.+.|+++ +++++++++++
T Consensus 161 v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 161 IWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred EEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 88888888888889999999999999999999999999999999999999999999999999999988 99999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
++.+++++.+++.+. +++.+++++|.|++++|++|+++.+.++..|++++++|+|.||+++||++|+|||+|||++.|.
T Consensus 240 i~~~~~~~~v~~~~~-~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~ 318 (471)
T PRK06467 240 VEAKEDGIYVTMEGK-KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318 (471)
T ss_pred EEEcCCEEEEEEEeC-CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcc
Confidence 987777777666432 1224679999999999999999977678889999999999999999999999999999999899
Q ss_pred cHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEE
Q 010573 361 LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 440 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 440 (507)
+++.|.+||+.||+||++...++++..+|+++|++|++++||+||++|+..|+++.++.+++....++...++++||+|+
T Consensus 319 la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl 398 (471)
T PRK06467 319 LAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKL 398 (471)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEEE
Confidence 99999999999999999877778888999999999999999999999999999999999999888888777788999999
Q ss_pred EEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCC
Q 010573 441 LAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 505 (507)
Q Consensus 441 ~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 505 (507)
++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++...+++.
T Consensus 399 i~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~~~ 463 (471)
T PRK06467 399 IFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGSIT 463 (471)
T ss_pred EEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999987655433
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-78 Score=615.10 Aligned_cols=459 Identities=57% Similarity=0.942 Sum_probs=414.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHh-hhhhCCcccCccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH-SFASHGVKFSSVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~ 121 (507)
+|||+||||||||++||..|++.|++|+|||+++.+||+|.+.||+|+|.++.....++.... ....+|+.. ....+|
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~~~~~ 81 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTLNL 81 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-cCccCH
Confidence 499999999999999999999999999999987889999999999999999998888765543 345667754 357899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
.+++.+++..+..+...++.++++.+|+++.+.+.+.+.+++.+.+.+|+..++.||+||||||++|+.+|+...++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~ 161 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRI 161 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence 99999999999988888888899999999999998888888888877775567999999999999998888876566678
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+++.+++.+...+++++|||+|++|+|+|..+.++|.+|+++++.+++++.+|+++.+.+++.|++.||+++++++++++
T Consensus 162 ~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 241 (466)
T PRK06115 162 IDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGA 241 (466)
T ss_pred ECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEE
Confidence 88888887777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCc
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~ 361 (507)
+.+++++.+.+....+++++++++|.|++++|++|++..+.++..+++++++| +.||+++||++|+|||+|||++.|++
T Consensus 242 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~~l 320 (466)
T PRK06115 242 TAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVTSGPML 320 (466)
T ss_pred EEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCCCCEEEeeecCCCccc
Confidence 87666776666433334567899999999999999999877788889988766 77999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEE
Q 010573 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL 441 (507)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 441 (507)
++.|.+||++||+||++.....++..+|.++|++|++++||+||++|++.|+++.++.+++....++.+.++++||+|++
T Consensus 321 a~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv 400 (466)
T PRK06115 321 AHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKIL 400 (466)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCCCceEEEEE
Confidence 99999999999999998766678889999999999999999999999999999999999999999988888888999999
Q ss_pred EECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccC
Q 010573 442 AEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDK 503 (507)
Q Consensus 442 ~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 503 (507)
+|+++++|||+|++|+++.|+|+.+++||+.++|++||.+++++|||++|++.++++.+.+.
T Consensus 401 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~~~~~ 462 (466)
T PRK06115 401 ADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGW 462 (466)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999877654
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=597.93 Aligned_cols=460 Identities=41% Similarity=0.675 Sum_probs=408.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||+||||||||++||.+|++.|++|+|||+ +.+||+|.+.||+|++.++.....++.+......+|+. ....+++
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~~~~~ 80 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEVTFDY 80 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCcccCH
Confidence 359999999999999999999999999999998 68999999999999999888777777666555667775 3457899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
..+..+++....++.......++..+|+.+.+.+.+++.+.+.+...+|+..++.||+||||||++|..+|+.+.. ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~-~~v 159 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLS-ENV 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCC-CcE
Confidence 9999999888888877777777888999999999999999998887776556899999999999999777876432 246
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
++.++.......+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+++.|+++||+++++++|+++
T Consensus 160 ~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i 239 (466)
T PRK07818 160 VTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESI 239 (466)
T ss_pred EchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEE
Confidence 67766655556789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCc
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~ 361 (507)
+.+++.+.+.+.. .+++.+++++|.|++|+|++|+++.+.++..|++++++|+|.||+++||+.|+|||+|||++.+++
T Consensus 240 ~~~~~~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~l 318 (466)
T PRK07818 240 DDNGSKVTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQL 318 (466)
T ss_pred EEeCCeEEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCccc
Confidence 8766666665542 233446899999999999999999776788999998889999999999999999999999998899
Q ss_pred HhHHHHHHHHHHHHHcCCCC-CC-CCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEE
Q 010573 362 AHKAEEDGVACVEFLAGKHG-HV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (507)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~-~~-~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (507)
++.|..||+.||.||++... .+ ++..+|.++|++|++++||+||++|+..|+++.+..+++....++.+.+++.||+|
T Consensus 319 ~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~K 398 (466)
T PRK07818 319 AHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVK 398 (466)
T ss_pred HhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEE
Confidence 99999999999999998653 34 77889999999999999999999999999999999999999999888888899999
Q ss_pred EEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCC
Q 010573 440 ILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 505 (507)
Q Consensus 440 ~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 505 (507)
+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++....+..
T Consensus 399 lv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~ 464 (466)
T PRK07818 399 LVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHGLAGHMI 464 (466)
T ss_pred EEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999999999999998766543
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-75 Score=594.62 Aligned_cols=457 Identities=32% Similarity=0.519 Sum_probs=407.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||+||||||||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+......+....+......+. ....+++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 82 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYR-VKLRITF 82 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccC-CcCccCH
Confidence 459999999999999999999999999999999889999999999999998877666654433211111111 1235689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
..+..+.+.....+...+.+++++.+++++.+++.+++.+.+.+...+|+...+.||+||||||++|..+|........+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v 162 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRI 162 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeE
Confidence 99999999888888888888899999999999999999999888877775457999999999999997666555556678
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+++.+++.+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++.+.+.+.+++.||+++++++++++
T Consensus 163 ~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i 242 (461)
T PRK05249 163 YDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKV 242 (461)
T ss_pred EcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEE
Confidence 88888888878899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCc
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~ 361 (507)
+.+++++.+++. +++++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||+.|+|||+|||++.+.+
T Consensus 243 ~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~~ 317 (461)
T PRK05249 243 EGGDDGVIVHLK-----SGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPSL 317 (461)
T ss_pred EEeCCeEEEEEC-----CCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCccc
Confidence 877677666653 345799999999999999999776788899999999999999999999999999999998899
Q ss_pred HhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEE
Q 010573 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL 441 (507)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 441 (507)
++.|.+||+.||.||++.....++..+|+++|+.|++++||+||++|++.|+++.++.+++....++.+.++++||+|++
T Consensus 318 ~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv 397 (461)
T PRK05249 318 ASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKIL 397 (461)
T ss_pred HhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCcEEEEE
Confidence 99999999999999998766678889999999999999999999999999999999999999888888888888999999
Q ss_pred EECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCC
Q 010573 442 AEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKP 504 (507)
Q Consensus 442 ~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~ 504 (507)
+|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.+.+++
T Consensus 398 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~ 460 (461)
T PRK05249 398 FHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAALDGLNRL 460 (461)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999998776643
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=590.96 Aligned_cols=461 Identities=55% Similarity=0.922 Sum_probs=412.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEec------CCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCccc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF 114 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~------~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 114 (507)
...||++||||||||++||.++++.|.+|+|||+ ...+||+|.+.+|+|++.+......+..+.+.+..+|+..
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 3469999999999999999999999999999998 3689999999999999999988888887776666778876
Q ss_pred CccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec----CCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS----PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d----~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
....++|.++..+++..+..+...++.+++..+|+++.+++.+++ ...+.+...++ .+++||+||||||++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~--~~~~~d~lViATGs~p~~ 159 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDE--TVITAKHVIIATGSEPRH 159 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCC--eEEEeCEEEEeCCCCCCC
Confidence 666789999999999999888888888999999999999998887 45555543333 589999999999999976
Q ss_pred CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCc
Q 010573 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 191 ~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
+|+...+...++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.|++.||
T Consensus 160 ~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi 239 (475)
T PRK06327 160 LPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGL 239 (475)
T ss_pred CCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCc
Confidence 77766556678888888877778999999999999999999999999999999999999998999999999999999999
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
+++++++|++++.+++++.+.+.+. +++.+++++|.|++++|++|++..+.++..+++++++|+|.||+++||++|+||
T Consensus 240 ~i~~~~~v~~i~~~~~~v~v~~~~~-~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~Vy 318 (475)
T PRK06327 240 DIHLGVKIGEIKTGGKGVSVAYTDA-DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVY 318 (475)
T ss_pred EEEeCcEEEEEEEcCCEEEEEEEeC-CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEE
Confidence 9999999999987777777666432 233357999999999999999987667888999999999999999999999999
Q ss_pred EecCCCCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhh
Q 010573 351 AIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA 430 (507)
Q Consensus 351 A~GD~a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (507)
|+|||++.+.+++.|..||+.||.||++....+++..+|+++|++|++++||+||++++..|+++.+..+++....++.+
T Consensus 319 A~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~ 398 (475)
T PRK06327 319 AIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALA 398 (475)
T ss_pred EEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhh
Confidence 99999998889999999999999999987666778889999999999999999999999999999999999988888888
Q ss_pred cCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCC
Q 010573 431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKP 504 (507)
Q Consensus 431 ~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~ 504 (507)
.+++.||+|+++|+++++|||+|++|+++.|+|+.++.||++++|++||.+++++|||++|.+.++++.+...+
T Consensus 399 ~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~ 472 (475)
T PRK06327 399 MGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDKRP 472 (475)
T ss_pred cCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHHhccCc
Confidence 88889999999999999999999999999999999999999999999999999999999999999987664443
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-74 Score=591.31 Aligned_cols=458 Identities=51% Similarity=0.812 Sum_probs=411.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..|||+||||||||++||..|++.|++|+|||++. +||+|.+.||+|++.+......++.... ...+|+......++|
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~ 80 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARH-SEDFGIKAENVGIDF 80 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHH-HHhcCcccCCCccCH
Confidence 35999999999999999999999999999999965 9999999999999999988887776554 466676654556799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
..+..+.+...+.+...+...+++.+|+++.+++.+++++.+.+...++. ..+.||+||||||++|..+|+...++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~-~~~~~d~lViAtGs~p~~~pg~~~~~~~v 159 (462)
T PRK06416 81 KKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGE-QTYTAKNIILATGSRPRELPGIEIDGRVI 159 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCc-EEEEeCEEEEeCCCCCCCCCCCCCCCCeE
Confidence 99999999988888888888888999999999999999999888754432 67999999999999998788876666678
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+++.+...+...+++++|||+|++|+|+|..|.+.|.+||++++.+++++.+++++.+.+.+.+++.||+++++++++++
T Consensus 160 ~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i 239 (462)
T PRK06416 160 WTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV 239 (462)
T ss_pred EcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 88888888777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCc
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~ 361 (507)
+.+++++.+.+.+ +++.+++++|.||+|+|++|++.++.++..|++++ +|+|.||+++||++|+|||+|||++.+.+
T Consensus 240 ~~~~~~v~v~~~~--gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~~~~~~ 316 (462)
T PRK06416 240 EQTDDGVTVTLED--GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGGPML 316 (462)
T ss_pred EEeCCEEEEEEEe--CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecCCCcch
Confidence 8777777666542 12336799999999999999999876778899988 79999999999999999999999988889
Q ss_pred HhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEE
Q 010573 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL 441 (507)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 441 (507)
++.|..||+.||.||++....+++..+|.+.|++|+++++|+|+++|+..|+++.+..+++....++.+.+++++++|++
T Consensus 317 ~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli 396 (462)
T PRK06416 317 AHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLI 396 (462)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCceEEEEE
Confidence 99999999999999998776677888999999999999999999999999999999999988888888777889999999
Q ss_pred EECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCC
Q 010573 442 AEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 505 (507)
Q Consensus 442 ~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 505 (507)
+|+++++|||+|++|+++.|+|+.++.||++++|++||.+++++|||++|++..+++.+.++..
T Consensus 397 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~ 460 (462)
T PRK06416 397 FDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALAAAGKPL 460 (462)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHhccCcc
Confidence 9999999999999999999999999999999999999999999999999999999988766544
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-74 Score=589.56 Aligned_cols=447 Identities=30% Similarity=0.480 Sum_probs=397.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEec---------CCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG 111 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 111 (507)
..+||++||||||||+.||..|+++|.+|+|||+ .+.+||+|.+.||+|+|.++.....++...+ ...+|
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~-~~~~G 101 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED-AKNYG 101 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH-HHhcC
Confidence 3469999999999999999999999999999996 3579999999999999999998888776654 46677
Q ss_pred cccC-ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 112 VKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
+... ...++|.++..+....+.++...++..+...+|+++.+.+.+++++.+.|.+.+|+...+.||+||||||++|..
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~ 181 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR 181 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC
Confidence 7653 457899999999999999988888889999999999999999999999999888755679999999999999853
Q ss_pred --CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc
Q 010573 191 --LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (507)
Q Consensus 191 --~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~ 268 (507)
+|+.. ..+++++++.+...+++++|||+|++|+|+|..+.++|.+|+++++.+++++.+|+++.+.+.+.|++.
T Consensus 182 p~ipG~~----~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 257 (499)
T PLN02507 182 PNIPGKE----LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGR 257 (499)
T ss_pred CCCCCcc----ceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhC
Confidence 34432 235777777777779999999999999999999999999999999999888899999999999999999
Q ss_pred CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCC
Q 010573 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~ 348 (507)
||++++++.|++++.+++++.+.+. +++++++|.|++++|++|++..+.++..|++++++|+|.||+++||++||
T Consensus 258 GI~i~~~~~V~~i~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~ 332 (499)
T PLN02507 258 GINLHPRTNLTQLTKTEGGIKVITD-----HGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPS 332 (499)
T ss_pred CCEEEeCCEEEEEEEeCCeEEEEEC-----CCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCC
Confidence 9999999999999876667666643 45679999999999999999987778889999988999999999999999
Q ss_pred eEEecCCCCCCCcHhHHHHHHHHHHHHHcCCCC-CCCCCCccEEEEcCCCeeeecCCHHHHHHc-CCCEEEEEEecCccc
Q 010573 349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVEYRVGKFPFLANS 426 (507)
Q Consensus 349 IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~~~~~~~~~~~~~~~ 426 (507)
|||+|||++.+.+++.|.+||++||+||++... ...+..+|+++|+.|++++||+||++|+.. +.++.+...++....
T Consensus 333 IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~ 412 (499)
T PLN02507 333 IWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMK 412 (499)
T ss_pred EEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEEEEeecCccc
Confidence 999999999889999999999999999997543 356778899999999999999999999987 688888888887766
Q ss_pred chhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 427 RAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 427 ~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
++.....+++|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++..++
T Consensus 413 ~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 413 NTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMR 483 (499)
T ss_pred cccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHH
Confidence 66555557899999999999999999999999999999999999999999999999999999999998876
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-74 Score=586.59 Aligned_cols=457 Identities=46% Similarity=0.747 Sum_probs=406.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
|...|||+||||||||++||.+|+++|++|+|||+ +.+||+|.+.||+|+|.+....+.+..... ...+|+......+
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~ 78 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK-GKLGGTCLHKGCIPSKALLHSAEVFQTAKK-ASPFGISVSGPAL 78 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEc-cCCCcceEcCCcCchHHHHHHHHHHHHHHH-HHhcCccCCCCcc
Confidence 34579999999999999999999999999999999 589999999999999999988888776654 4566776555678
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCC-------EEEEEccCCceEEEEeCeEEEccCCCCCCCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS-------EVSVDTIEGGNTVVKGKNIIIATGSDVKSLP 192 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-------~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~p 192 (507)
+|.++..+++..+..+.......+++.+|+++.+.+.++|.+ .+.|.+.+|+...+.||+||||||++|..+|
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p 158 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELP 158 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCC
Confidence 999999999999988888888888999999999999999988 8888877775568999999999999997777
Q ss_pred CCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 193 GITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
+...++..++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i 238 (472)
T PRK05976 159 GLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRV 238 (472)
T ss_pred CCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEE
Confidence 76655666888888888777899999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 273 MLKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 273 ~~~~~v~~i~~-~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
++++++++++. .++++.+... .+++.+++++|.+++|+|++|++..+.++..++..+ +|+|.||++++|+.|+|||
T Consensus 239 ~~~~~v~~i~~~~~~~~~~~~~--~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l~ts~~~IyA 315 (472)
T PRK05976 239 VTGAKVLGLTLKKDGGVLIVAE--HNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFCQTKERHIYA 315 (472)
T ss_pred EeCcEEEEEEEecCCCEEEEEE--eCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCcccCCCCEEE
Confidence 99999999975 1334433221 123345799999999999999998766667777664 5899999999999999999
Q ss_pred ecCCCCCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhh
Q 010573 352 IGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA 430 (507)
Q Consensus 352 ~GD~a~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (507)
+|||++.+.+++.|..||+.||+||++.. ..+++..+|.++|++|+++++|+++++++..|+++.+..+++....++.+
T Consensus 316 iGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~ 395 (472)
T PRK05976 316 IGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALT 395 (472)
T ss_pred eeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhh
Confidence 99999888899999999999999999875 55677789999999999999999999999999999999999998888888
Q ss_pred cCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhc
Q 010573 431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501 (507)
Q Consensus 431 ~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~ 501 (507)
.++++||+|+++|+++++|||+|++|+++.|+|+.++.||++++|++||.+++++|||++|++.++++.+.
T Consensus 396 ~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 466 (472)
T PRK05976 396 YGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAAD 466 (472)
T ss_pred cCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999988653
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-74 Score=587.15 Aligned_cols=454 Identities=35% Similarity=0.562 Sum_probs=401.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccC-ccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVE 118 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 118 (507)
|+.+|||+||||||||++||.+|++.|++|+|||+ ..+||+|.+.||+|+|.++.....+..... ...+|+... ...
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~ 79 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIER-GLLGGTCVNTGCVPTKTLIASARAAHLARR-AAEYGVSVGGPVS 79 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CccCCceeccccCcHHHHHHHHHHHHHHHH-HHhcCcccCccCc
Confidence 44569999999999999999999999999999998 589999999999999999988887776554 355677643 357
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITID 197 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~ 197 (507)
++|..+..+.+....++...+..++++. +|+++.+++.+++.+.+.+ ++ .++.||+||||||++|..++....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v---~~--~~~~~d~lViATGs~p~~p~i~G~~ 154 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV---GG--ETLRAKRIFINTGARAAIPPIPGLD 154 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEcCCCCCCCCCCCCCC
Confidence 8999999999988888777788888887 9999999988888877766 34 5799999999999998543322233
Q ss_pred CceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCce
Q 010573 198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
...+++..+.......+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~ 234 (463)
T PRK06370 155 EVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAE 234 (463)
T ss_pred cCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 45678888887777779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 278 v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
+.+++.+++++.+.+.. ++++.++++|.||+|+|++|+++.+.++..|++++++|+|.||+++||++|||||+|||++
T Consensus 235 V~~i~~~~~~~~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~ 312 (463)
T PRK06370 235 CIRVERDGDGIAVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNG 312 (463)
T ss_pred EEEEEEcCCEEEEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCC
Confidence 99998776666555432 1234679999999999999999866678889999999999999999999999999999999
Q ss_pred CCCcHhHHHHHHHHHHHHHcCC-CCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcce
Q 010573 358 GPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG 436 (507)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (507)
.+.+++.|.+||++||+||++. ...+++..+|+++|++|+++++|+||++|++.|+++.+..+++....++...++++|
T Consensus 313 ~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 392 (463)
T PRK06370 313 RGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQG 392 (463)
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCE
Confidence 9999999999999999999975 555778889999999999999999999999999999999999998888877777889
Q ss_pred EEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhcc
Q 010573 437 IVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHD 502 (507)
Q Consensus 437 ~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~ 502 (507)
|+|+++|+++++|||+|++|+++.|+|+.++.||++++|++||.+++++|||++|++.++++.+..
T Consensus 393 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~ 458 (463)
T PRK06370 393 FMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALRR 458 (463)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999987654
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-74 Score=585.03 Aligned_cols=440 Identities=30% Similarity=0.502 Sum_probs=394.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+||||||||++||..++++|++|+|||+ +.+||+|.+.||+|+|.++.....++.+.+ ...+|+......++|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKKLMVYGSTFGGEFED-AAGYGWTVGKARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchHHHHHHHHHHHHHhh-hHhcCcCCCCCCcCHH
Confidence 58999999999999999999999999999999 689999999999999999988888766544 4667776666678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccCCce
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDEKR 200 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~~~~ 200 (507)
++..+.+..+..+...++..+++.+++++.+++.+++++.+.+. .+| ..+.||+||||||++|.. +||.. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g--~~~~~d~lIiATGs~p~~p~i~G~~----~ 152 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDG--TTYTAKKILIAVGGRPQKPNLPGHE----L 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCC--eEEEcCEEEEecCCcCCCCCCCCcc----c
Confidence 99999999999998888899999999999999999998877775 344 679999999999999853 34432 2
Q ss_pred EecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
.+++.+.+.+...+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++.+++++.+.+.+.|++.||++++++.+++
T Consensus 153 ~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 153 GITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred eechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 45667777777779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
++.+++++.+++. +++++++|.|++|+|++|+++.+.++..|++++++|+|.||+++||++|||||+|||++.+.
T Consensus 233 i~~~~~~~~v~~~-----~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~ 307 (446)
T TIGR01424 233 ITKTDDGLKVTLS-----HGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN 307 (446)
T ss_pred EEEcCCeEEEEEc-----CCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc
Confidence 9876666666654 45689999999999999999877678899999989999999999999999999999999889
Q ss_pred cHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcC-CCEEEEEEecCcccchhhcCCcceEE
Q 010573 361 LAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELG-VEYRVGKFPFLANSRAKAIDDAEGIV 438 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (507)
+++.|.+||++||+||++.. .++++..+|+++|+.|+++++|+||++|+..+ +++.+...++....++...+.++||+
T Consensus 308 l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 387 (446)
T TIGR01424 308 LTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLM 387 (446)
T ss_pred chhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEE
Confidence 99999999999999999754 45778899999999999999999999999984 89998888887777776667778999
Q ss_pred EEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHH
Q 010573 439 KILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEA 496 (507)
Q Consensus 439 k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~ 496 (507)
|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++
T Consensus 388 kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 388 KLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred EEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999998764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-74 Score=584.01 Aligned_cols=444 Identities=30% Similarity=0.506 Sum_probs=390.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+||++||||||+|.+||..+ .|.+|+|||+ +.+||+|+|.||+|+|.++..+..++...+ ...+|+......++|.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAADVARTIRE-AARLGVDAELDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeC-CCCCCcccCcCcchhHHHHHHHHHHHHHHH-HHhCCccCCCCcCCHH
Confidence 38999999999999998764 5999999998 689999999999999999999888876654 4567776555678999
Q ss_pred HHHHHHHHHHHHHHHH-HHHH-HHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCce
Q 010573 123 AMMAQKDKAVSNLTRG-IEGL-FKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~ 200 (507)
++..+.+..++++... ...+ ++..+++++.+++.+++++.+.+ .+| +.+.||+||||||++|..++........
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v--~~g--~~~~~d~lViATGs~p~~p~i~g~~~~~ 152 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRT--GDG--EEITADQVVIAAGSRPVIPPVIADSGVR 152 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEE--CCC--CEEEeCEEEEcCCCCCCCCCCCCcCCcc
Confidence 9999999998888653 4455 77889999999999998777666 345 5799999999999999644433223445
Q ss_pred EecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
+++.+++..+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+.+.+ +.||++++++++++
T Consensus 153 ~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~ 231 (451)
T PRK07846 153 YHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVG 231 (451)
T ss_pred EEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEE
Confidence 77888888887889999999999999999999999999999999999999999999998887655 56899999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
++.+++++.+++. +++++++|.|++|+|++|+++++.++..+++++++|+|.||+++||++|||||+|||++.++
T Consensus 232 i~~~~~~v~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~ 306 (451)
T PRK07846 232 VSQDGSGVTLRLD-----DGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQ 306 (451)
T ss_pred EEEcCCEEEEEEC-----CCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCcc
Confidence 9877666666653 45689999999999999999987778889999999999999999999999999999999989
Q ss_pred cHhHHHHHHHHHHHHHcCCC--CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEE
Q 010573 361 LAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIV 438 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (507)
+++.|.+||+++++||++.. ...++..+|+++|++|+++++|+||++|+..|+++.+..+++....++...++++||+
T Consensus 307 l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 386 (451)
T PRK07846 307 LKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFV 386 (451)
T ss_pred ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEE
Confidence 99999999999999999752 3457888999999999999999999999999999999999999888887777788999
Q ss_pred EEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCc-CCCCChHHHHHHHHHHh
Q 010573 439 KILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVC-HAHPTMSEALKEAAMAT 500 (507)
Q Consensus 439 k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~-~~~p~~~~~~~~~~~~~ 500 (507)
|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.++. ++|||++|++.++++.+
T Consensus 387 Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 449 (451)
T PRK07846 387 KLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLGL 449 (451)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999875 69999999999988753
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-74 Score=586.66 Aligned_cols=441 Identities=31% Similarity=0.519 Sum_probs=393.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
+.+|||+||||||||++||..|+++|++|+|||+ ..+||+|.+.||+|++.++........+......+|+......++
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~-~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEA-KRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec-cchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcC
Confidence 3469999999999999999999999999999999 589999999999999999988877766665445677765556789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCC--CCCccCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDE 198 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~--pg~~~~~ 198 (507)
|..+..+.+..+.++...+...+.+.+|+++.+++.+++.+.+.+ ++ ..+.||+||||||++|..+ |+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~---~g--~~~~~d~lViATGs~p~~p~i~g~---- 151 (450)
T PRK06116 81 WAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV---NG--ERYTADHILIATGGRPSIPDIPGA---- 151 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCCCCCc----
Confidence 999999998888888888888888999999999999998876666 45 6799999999999998543 332
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..++++.+.+.+...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++.+++++.+.+.+.|++.||+++++++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V 231 (450)
T PRK06116 152 EYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVP 231 (450)
T ss_pred ceeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEE
Confidence 24667777777777799999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 279 VGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 279 ~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
++++.++++ +.+.+. +++++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||++|||||+|||++
T Consensus 232 ~~i~~~~~g~~~v~~~-----~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~ 306 (450)
T PRK06116 232 KAVEKNADGSLTLTLE-----DGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTG 306 (450)
T ss_pred EEEEEcCCceEEEEEc-----CCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCC
Confidence 999876554 556654 34679999999999999999977678889999999999999999999999999999998
Q ss_pred CCCcHhHHHHHHHHHHHHHcCCCC--CCCCCCccEEEEcCCCeeeecCCHHHHHHcCCC--EEEEEEecCcccchhhcCC
Q 010573 358 GPMLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLANSRAKAIDD 433 (507)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 433 (507)
.+.+++.|.+||+.||+||++... ..++..+|+++|+.|++++||+||++|++.+.+ +.+...++....++...++
T Consensus 307 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (450)
T PRK06116 307 RVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHR 386 (450)
T ss_pred CcCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCC
Confidence 888999999999999999998543 457889999999999999999999999999887 8888888888888777777
Q ss_pred cceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHH
Q 010573 434 AEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEA 496 (507)
Q Consensus 434 ~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~ 496 (507)
++||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++
T Consensus 387 ~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 387 QPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 899999999999999999999999999999999999999999999999999999999999765
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-74 Score=583.77 Aligned_cols=451 Identities=32% Similarity=0.541 Sum_probs=405.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccC---ccccC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS---SVEVD 120 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~ 120 (507)
.|++|||+||+|+.||..|+++|.+|+|||++ .+||+|.+.||+|+|.++..+...+...+ ...+|+... ...++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRR-AAELGIRFIDDGEARVD 79 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHH-HHhCCcccccCcccccC
Confidence 58999999999999999999999999999984 69999999999999999988877776653 566777542 45789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEE----ecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCcc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF----ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI 196 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~ 196 (507)
|..+..+.+...+.+...+.+.+++.+|+++.+++.+ ++++.+.|.+.+|+...+.||+||||||++|..+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~ 159 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEP 159 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCC
Confidence 9999999999998888888888999999999999988 778888888777744579999999999999976665443
Q ss_pred CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
+...+++..+...+...+++++|||+|.+|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++||++++++
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~ 239 (466)
T PRK07845 160 DGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRS 239 (466)
T ss_pred CCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCC
Confidence 45567888888777777999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCC
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a 356 (507)
++++++.+++++.+.+. +++++++|.|++++|++|++..+.+++.|++++++|+|.||+++||++|||||+|||+
T Consensus 240 ~v~~v~~~~~~~~v~~~-----~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~ 314 (466)
T PRK07845 240 RAESVERTGDGVVVTLT-----DGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCT 314 (466)
T ss_pred EEEEEEEeCCEEEEEEC-----CCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeecc
Confidence 99999876677766654 3468999999999999999997767888999999999999999999999999999999
Q ss_pred CCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcc
Q 010573 357 PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435 (507)
Q Consensus 357 ~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (507)
+.+++++.|..||++|+.|+++.. ...++..+|..+|++|++++||+|+++|+..|+++.+..+++....++.+.+.++
T Consensus 315 ~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 394 (466)
T PRK07845 315 GVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRD 394 (466)
T ss_pred CCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccCchhhhcCCCc
Confidence 999999999999999999999864 4467888999999999999999999999999999999999998888888777889
Q ss_pred eEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhc
Q 010573 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501 (507)
Q Consensus 436 ~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~ 501 (507)
||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++...
T Consensus 395 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 460 (466)
T PRK07845 395 GFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARRLM 460 (466)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999887643
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-74 Score=583.02 Aligned_cols=446 Identities=31% Similarity=0.507 Sum_probs=386.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecC--------CCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~--------~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 112 (507)
.+|||+||||||+|+.||..++++ |.+|+|||++ +.+||+|+|.||+|+|.+++.+..++...+ ...+|+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRE-SAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHH-hhccCe
Confidence 469999999999999999999997 9999999984 579999999999999999999988776664 355677
Q ss_pred ccC--ccccChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEecCCEEEEEccC-C---ceEEEEeCeEEEccC
Q 010573 113 KFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSEVSVDTIE-G---GNTVVKGKNIIIATG 185 (507)
Q Consensus 113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~d~~~~~v~~~~-g---~~~~~~~d~lvlAtG 185 (507)
... ...++|.++..+++..+..+...+..++++ .+|+++.|.+.+++++.+.|.... + ..+.+.||+||||||
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATG 160 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATG 160 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecC
Confidence 532 456899999999999999998888888887 599999999999999998886421 1 136899999999999
Q ss_pred CCCCC--CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhc---CCeeEEEcccCccCCCCCHHHHHH
Q 010573 186 SDVKS--LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQ 260 (507)
Q Consensus 186 ~~p~~--~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~d~~~~~~ 260 (507)
++|.. +||.+ .++++++++.+...+++++|||+|++|+|+|..+..+ |.+||++++.+++++.+|+++.+.
T Consensus 161 s~p~~p~i~G~~----~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~ 236 (486)
T TIGR01423 161 SWPQMLGIPGIE----HCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKE 236 (486)
T ss_pred CCCCCCCCCChh----heechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHH
Confidence 99853 34432 3567777777777799999999999999999887665 999999999999999999999999
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd 339 (507)
+.+.|++.||++++++.+++++.++++ ..+.+. +++++++|.|++|+|++|++..+.++..+++++++|+|.||
T Consensus 237 l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd 311 (486)
T TIGR01423 237 LTKQLRANGINIMTNENPAKVTLNADGSKHVTFE-----SGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVD 311 (486)
T ss_pred HHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEc-----CCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecC
Confidence 999999999999999999999865443 455553 34579999999999999999987778899999999999999
Q ss_pred CCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEE
Q 010573 340 ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVG 418 (507)
Q Consensus 340 ~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 418 (507)
+++||++|||||+|||++.+++++.|.+||++||+||++.. ...++..+|+++|+.|++++||+||++|++.+.++.+.
T Consensus 312 ~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~~~~~~~ 391 (486)
T TIGR01423 312 EFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVY 391 (486)
T ss_pred CCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcCCceEEE
Confidence 99999999999999999999999999999999999999864 34577789999999999999999999999887777777
Q ss_pred EEecCcccchhhcC-CcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 419 KFPFLANSRAKAID-DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 419 ~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
..++....+..... ...+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 392 ESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred EEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 66665544433211 13689999999999999999999999999999999999999999999999999999999998885
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-74 Score=594.01 Aligned_cols=459 Identities=35% Similarity=0.545 Sum_probs=397.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC-CCCCceeccccccchhhhhhhhHHHHHHHhh--hhhCCcc----
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMYHEAMHS--FASHGVK---- 113 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~g~~---- 113 (507)
..+|||+|||+||+|+.||.++++.|.+|+|||+. ..+||+|.+.||+|+|.++..+..++.+.+. ...+|+.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 34799999999999999999999999999999973 4799999999999999999999988877653 2345664
Q ss_pred -------------c-CccccChHHHHHHHHHHHHHHHHHHHHHHHhCC-------cEEEEeEEEEecCCEEEEEccCCce
Q 010573 114 -------------F-SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-------VTYVKGYGKFISPSEVSVDTIEGGN 172 (507)
Q Consensus 114 -------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~d~~~~~v~~~~g~~ 172 (507)
. ....++|.++..+.+..+..+...+...+++.+ ++++.+.+.+++++.+.+. .++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~-~~g-- 270 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE-KSG-- 270 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc-cCC--
Confidence 1 335679999999999999999888888888765 8999999999999988775 344
Q ss_pred EEEEeCeEEEccCCCCCCCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC
Q 010573 173 TVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS 252 (507)
Q Consensus 173 ~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~ 252 (507)
.++.||+||||||++|..+++...+...++++++++.+...+++++|||+|++|+|+|..|.++|.+||++++.+++++.
T Consensus 271 ~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~ 350 (659)
T PTZ00153 271 KEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL 350 (659)
T ss_pred EEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence 67999999999999997665555556678899998888888999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH-HhcCcEEEcCceEEEEEEcCCe--EEEEEeecCCC----------ceEEEEcCEEEEeecCCCCCC
Q 010573 253 MDGEIRKQFQRSL-EKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGG----------EKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 253 ~d~~~~~~~~~~l-~~~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~g----------~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+|+++.+.+.+.+ ++.||++++++.|++++.+++. +.+.+.+..++ +.+++++|.|++|+|++||++
T Consensus 351 ~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~ 430 (659)
T PTZ00153 351 LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN 430 (659)
T ss_pred CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence 9999999998876 6799999999999999866543 55544321111 124799999999999999999
Q ss_pred CCCCcccCceecCCCCeecCCCCCCC------CCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCC-------------C
Q 010573 320 GLGLDKIGVETDKMGRIPVNERFATN------IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK-------------H 380 (507)
Q Consensus 320 ~l~~~~~gl~~~~~G~i~Vd~~~~t~------~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~-------------~ 380 (507)
.+.++..++++++ |+|.||++|||+ +|+|||+|||++.+++++.|.+||++|++||++. .
T Consensus 431 ~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~ 509 (659)
T PTZ00153 431 NLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENWAS 509 (659)
T ss_pred cCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCccccccccccccc
Confidence 8877888888865 899999999997 6999999999999999999999999999999986 4
Q ss_pred CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCC--CEEEEEEecCcccchhhcCC----------------------cce
Q 010573 381 GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGV--EYRVGKFPFLANSRAKAIDD----------------------AEG 436 (507)
Q Consensus 381 ~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------------~~~ 436 (507)
..++|..+|.++|++|++++||+||++|++.+. ++.+...++....++...++ ++|
T Consensus 510 ~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G 589 (659)
T PTZ00153 510 KPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEG 589 (659)
T ss_pred cccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCce
Confidence 456788999999999999999999999999884 46666677777777655443 789
Q ss_pred EEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccC
Q 010573 437 IVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDK 503 (507)
Q Consensus 437 ~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 503 (507)
|+|+++++++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++..+++++...
T Consensus 590 ~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~~~ 656 (659)
T PTZ00153 590 MVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIAGV 656 (659)
T ss_pred EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999887653
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-74 Score=581.29 Aligned_cols=441 Identities=31% Similarity=0.496 Sum_probs=387.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccC-ccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~ 121 (507)
.|||+||||||||++||..|++.|++|+|||+ +.+||+|.+.||+|+|.++.....+..+.+ ...+|+... ...++|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVNVGCVPKKVMWYASDLAERMHD-AADYGFYQNLENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceeccCcCccHHHHHHHHHHHHHhH-HhhcCcccCCcCccCH
Confidence 58999999999999999999999999999999 579999999999999999988888776653 466676543 235899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
.++..+.+..++.+...+...+++.+|+++.+++.+.+.+.+.+ ++ ..+.||+||||||++|..++..+. ....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v---~~--~~~~~d~vIiAtGs~p~~p~~i~g-~~~~ 153 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV---NG--RDYTAPHILIATGGKPSFPENIPG-AELG 153 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE---CC--EEEEeCEEEEecCCCCCCCCCCCC-Ccee
Confidence 99999999999999888888899999999999998888776655 34 579999999999999854412221 1123
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+++++.+.+...+++++|||+|++|+|+|..|+++|++||++++.+++++.+|+++.+.+.+.|++.||++++++.++++
T Consensus 154 ~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i 233 (450)
T TIGR01421 154 TDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKV 233 (450)
T ss_pred EcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 56777777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCe-EEEEEeecCCCce-EEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCC
Q 010573 282 DLSGDG-VKLTLEPAAGGEK-TILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (507)
Q Consensus 282 ~~~~~~-v~v~~~~~~~g~~-~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~ 359 (507)
+.++++ +.+++. ++ +.+++|.|++++|++|+++.+.++..+++++++|+|.||+++||++|||||+|||++.+
T Consensus 234 ~~~~~~~~~v~~~-----~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~ 308 (450)
T TIGR01421 234 EKTVEGKLVIHFE-----DGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV 308 (450)
T ss_pred EEeCCceEEEEEC-----CCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc
Confidence 865443 556553 23 57999999999999999998777889999999999999999999999999999999999
Q ss_pred CcHhHHHHHHHHHHHHHcCCC--CCCCCCCccEEEEcCCCeeeecCCHHHHHHc-CCC-EEEEEEecCcccchhhcCCcc
Q 010573 360 MLAHKAEEDGVACVEFLAGKH--GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVE-YRVGKFPFLANSRAKAIDDAE 435 (507)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 435 (507)
.+++.|.+||+.||+||++.. ...++..+|+++|++|++++||+||++|++. +++ +.+...++....++...+.++
T Consensus 309 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 388 (450)
T TIGR01421 309 ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQK 388 (450)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCc
Confidence 999999999999999999643 3457889999999999999999999999876 664 888888888777777777889
Q ss_pred eEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHH
Q 010573 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEA 496 (507)
Q Consensus 436 ~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~ 496 (507)
||+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++++|||++|+|.++
T Consensus 389 g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 389 CRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999998764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=580.29 Aligned_cols=454 Identities=38% Similarity=0.639 Sum_probs=404.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccC--ccccChH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS--SVEVDLP 122 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~ 122 (507)
+|+||||||||++||.+|++.|++|+|||+ ..+||+|.+.||+|+|.+++....++.... ...+|+... ....+|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~-~~~GG~c~n~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDE-ADLGGTCLNEGCMPTKSLLESAEVHDKVKK-ANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEC-CcccccCCCCccccchHHHHHHHHHHHHHH-HHhcCccccCCCCccCHH
Confidence 799999999999999999999999999999 579999999999999999998888776653 355677542 4578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
++..+.+..++++...++.++++.+++++.+++.+++++.+.|...++ ..++.||+||||||++|..+|....+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~-~~~~~~d~lviATGs~p~~~p~~~~~~~~v~ 158 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDK-EEVVDAEQFIIAAGSEPTELPFAPFDGKWII 158 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCC-cEEEECCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence 999999999999888888888999999999999999999998886544 3579999999999999976654444456788
Q ss_pred cchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 203 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
++.++..+...+++++|||+|++|+|+|..+.+.|.+|+++++.+++++.+++++.+.+.+.|++.||++++++.+++++
T Consensus 159 ~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 159 NSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred cchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcH
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA 362 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~ 362 (507)
.++..+.+.. +++..++++|.|++|+|++|+++.+.++..|++++++| |.||+++||+.|||||+|||++.++++
T Consensus 239 ~~~~~v~~~~----~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~~~la 313 (458)
T PRK06912 239 SYKKQALFEY----EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLA 313 (458)
T ss_pred EcCCEEEEEE----CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCCcccH
Confidence 6655444432 22335799999999999999998776778889888766 999999999999999999999989999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEE
Q 010573 363 HKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILA 442 (507)
Q Consensus 363 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 442 (507)
+.|.+||++||.|+++.....++..+|.++|++|++++||+|+++|+..++++.+..+++....++...+++.||+||++
T Consensus 314 ~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~ 393 (458)
T PRK06912 314 HVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIV 393 (458)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEE
Confidence 99999999999999987666677889999999999999999999999999999999988988888888888899999999
Q ss_pred ECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 443 EKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 443 ~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++..+.+..|
T Consensus 394 d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~ 457 (458)
T PRK06912 394 EPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVGHAVH 457 (458)
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHHhhcCcCC
Confidence 9999999999999999999999999999999999999999999999999999998877665443
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=583.48 Aligned_cols=450 Identities=32% Similarity=0.492 Sum_probs=393.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..+||++|||+||||+++|..|++.|.+|+|||+++.+||+|.+.||+|++.++......+.... ....|+......++
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~ 92 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRS-NPFDGVEAVAPSID 92 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhh-ccccCcccCCCccC
Confidence 34689999999999999999999999999999998799999999999999999988777665543 23346654455688
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHhC-CcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCcc
Q 010573 121 LPAMMAQKDKAVSNLTR-GIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITI 196 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~ 196 (507)
+..+..+.+..+.++.. .+...++.. +++++.|.+.+.+.+.+.|...+|+..++.||+||||||++|.. +||..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~- 171 (479)
T PRK14727 93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLM- 171 (479)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcC-
Confidence 99999888888777754 356666655 89999999999999999998877755689999999999999854 34432
Q ss_pred CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
...+++..+.+.....+++++|||+|++|+|+|..|.+.|.+|+++++. ++++.+|+++.+.+++.+++.||++++++
T Consensus 172 -~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~ 249 (479)
T PRK14727 172 -DTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNT 249 (479)
T ss_pred -ccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCc
Confidence 2345666666555566899999999999999999999999999999874 67788999999999999999999999999
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCC
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a 356 (507)
++++++.+++.+.+... + .++++|.|++|+|+.||+..+.++..|++++++|+|.||+++||++|+|||+|||+
T Consensus 250 ~V~~i~~~~~~~~v~~~-----~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~ 323 (479)
T PRK14727 250 QASLVEHDDNGFVLTTG-----H-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCS 323 (479)
T ss_pred EEEEEEEeCCEEEEEEc-----C-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecC
Confidence 99999876666665542 2 36899999999999999998767888999999999999999999999999999999
Q ss_pred CCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcce
Q 010573 357 PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG 436 (507)
Q Consensus 357 ~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (507)
+.+.+++.|..||+.||.||++....+++..+|.++|++|++++||+|+++|+..|+++.+..+++....++.....+++
T Consensus 324 ~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 403 (479)
T PRK14727 324 DLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDG 403 (479)
T ss_pred CcchhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCe
Confidence 99999999999999999999987767788889999999999999999999999999999999999888888766556789
Q ss_pred EEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHh
Q 010573 437 IVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT 500 (507)
Q Consensus 437 ~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 500 (507)
|+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++..
T Consensus 404 ~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~ 467 (479)
T PRK14727 404 FIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQTF 467 (479)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999998643
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=582.27 Aligned_cols=450 Identities=31% Similarity=0.541 Sum_probs=392.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
....|||+||||||||++||..|++.|++|+|||+ +.+||+|.+.||+|++.+....+.++.........|+......+
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~-~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIER-GTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEc-cccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 45679999999999999999999999999999999 57999999999999999988887766444321134665445678
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHh-CCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCc
Q 010573 120 DLPAMMAQKDKAVSNLTRG-IEGLFKK-NKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~ 195 (507)
+|..+..+.+..+..+... +...++. .+++++.+.+.++|.+.+.|.+.+|+..++.||+||||||++|.. +||..
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~ 161 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLA 161 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCC
Confidence 9999999998888777553 4455654 489999999999999999998887755689999999999999853 45543
Q ss_pred cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
...++++.+...+...+++++|||+|++|+|+|..|.++|.+|+++++ +++++.+++++.+.+++.+++.||+++++
T Consensus 162 --~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~GI~v~~~ 238 (468)
T PRK14694 162 --ETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRREGIEVLKQ 238 (468)
T ss_pred --CCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 334667777777767789999999999999999999999999999986 56788899999999999999999999999
Q ss_pred ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCC
Q 010573 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355 (507)
Q Consensus 276 ~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~ 355 (507)
+.+++++.+++.+.+.+. +.++++|.|++|+|++|++.++.++.++++. ++|+|.||+++||++|+|||+|||
T Consensus 239 ~~v~~i~~~~~~~~v~~~------~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~ 311 (468)
T PRK14694 239 TQASEVDYNGREFILETN------AGTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDC 311 (468)
T ss_pred CEEEEEEEcCCEEEEEEC------CCEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeec
Confidence 999999876665555432 2369999999999999999986667778886 468999999999999999999999
Q ss_pred CCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcc
Q 010573 356 IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435 (507)
Q Consensus 356 a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (507)
++.+.+.+.|..||+.||.||++....+++..+|.++|++|++++||+||++|+..|+++.+..+++....++...++++
T Consensus 312 ~~~~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (468)
T PRK14694 312 TDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTG 391 (468)
T ss_pred CCCcccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCc
Confidence 99999999999999999999998776778888999999999999999999999999999999999999888887777788
Q ss_pred eEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHh
Q 010573 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT 500 (507)
Q Consensus 436 ~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 500 (507)
||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++..
T Consensus 392 g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~ 456 (468)
T PRK14694 392 GFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQTF 456 (468)
T ss_pred eEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888754
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=584.70 Aligned_cols=442 Identities=30% Similarity=0.465 Sum_probs=390.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEec---------CCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK---------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG 111 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~---------~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 111 (507)
..+|||+|||+||||+.||..|+++|++|+|||+ ...+||+|.|.||+|+|.++.....++.+.+ ...+|
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~-~~~~g 155 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEE-SRGFG 155 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHh-hhhcC
Confidence 3469999999999999999999999999999996 2568999999999999999988888776554 45677
Q ss_pred cccC-ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 112 VKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
+... ...+||..+..+++..+.++..++...+++.+|+++.+.+.+++.+.+.+ +| ..+.||+||||||++|..
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v---~G--~~~~~D~LVIATGs~p~~ 230 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV---DG--KLYTARNILIAVGGRPFI 230 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE---CC--EEEECCEEEEeCCCCCCC
Confidence 7653 45789999999999999999999999999999999999999999987666 35 679999999999999853
Q ss_pred --CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc
Q 010573 191 --LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (507)
Q Consensus 191 --~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~ 268 (507)
+||.. .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.|+++
T Consensus 231 P~IpG~~----~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~ 306 (558)
T PLN02546 231 PDIPGIE----HAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLR 306 (558)
T ss_pred CCCCChh----hccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHC
Confidence 44432 356777777777789999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCC
Q 010573 269 KMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP 347 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~ 347 (507)
||++++++.+++++.+++ .+.+... +++...+|.|++++|++|+++.+.++..|++++++|+|.||+++||++|
T Consensus 307 GV~i~~~~~v~~i~~~~~g~v~v~~~-----~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p 381 (558)
T PLN02546 307 GIEFHTEESPQAIIKSADGSLSLKTN-----KGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVP 381 (558)
T ss_pred CcEEEeCCEEEEEEEcCCCEEEEEEC-----CeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCC
Confidence 999999999999976433 3444332 3444568999999999999997767888999998899999999999999
Q ss_pred CeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCCC-CCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccc
Q 010573 348 GVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANS 426 (507)
Q Consensus 348 ~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~ 426 (507)
||||+|||++.+++++.|.+||+.+|.||++... ..+|..+|+++|++|++++||+||++|++.++++++...++....
T Consensus 382 ~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~~~ 461 (558)
T PLN02546 382 SIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRPLK 461 (558)
T ss_pred CEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEecccch
Confidence 9999999999999999999999999999998643 356788999999999999999999999999999999888888766
Q ss_pred chhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 427 RAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 427 ~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
+......+++|+|+++|+++++|||+|++|+++.|+|+.++.||++++|++||.+++++|||++|+|..++
T Consensus 462 ~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~ 532 (558)
T PLN02546 462 ATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMR 532 (558)
T ss_pred hhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHh
Confidence 55544456899999999999999999999999999999999999999999999999999999999998776
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=578.56 Aligned_cols=443 Identities=30% Similarity=0.527 Sum_probs=386.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+||++|||+||+|+.||.. ..|.+|+|||+ +.+||+|.|+||+|+|.++..+..++...+ ...+|+......++|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMFVYAAEVAQSIGE-SARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHHHHHHHHHHHHHH-hhccCeeCCCCccCHH
Confidence 5899999999999998654 46999999998 789999999999999999999888876664 4567776444578999
Q ss_pred HHHHHHHH-HHHHHHHHHHHH-H--HhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCC
Q 010573 123 AMMAQKDK-AVSNLTRGIEGL-F--KKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE 198 (507)
Q Consensus 123 ~~~~~~~~-~~~~~~~~~~~~-~--~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~ 198 (507)
++..++.. ....+....... . ++.+|+++.+++.+.+.+.+.+ .+| .++.||+||||||++|..+|+....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~--~~g--~~~~~d~lIiATGs~p~~p~~~~~~~ 153 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRT--GDG--EEITGDQIVIAAGSRPYIPPAIADSG 153 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEE--CCC--cEEEeCEEEEEECCCCCCCCCCCCCC
Confidence 99999887 666554432222 2 4479999999999988777665 355 57999999999999997665554444
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..+++.++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.++ .||++++++++
T Consensus 154 ~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V 232 (452)
T TIGR03452 154 VRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNV 232 (452)
T ss_pred CEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEE
Confidence 56788888888877899999999999999999999999999999999999988899999988877554 68999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~ 358 (507)
++++.+++++.+++. +++++++|.|++++|++|+++++.++..|++++++|+|.||+++||++|+|||+|||++.
T Consensus 233 ~~i~~~~~~v~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~ 307 (452)
T TIGR03452 233 TAVEQDGDGVTLTLD-----DGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP 307 (452)
T ss_pred EEEEEcCCeEEEEEc-----CCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCc
Confidence 999877767666653 345899999999999999999877788899999899999999999999999999999999
Q ss_pred CCcHhHHHHHHHHHHHHHcCCCC--CCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcce
Q 010573 359 PMLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG 436 (507)
Q Consensus 359 ~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (507)
+++++.|.+||+++|+||++... ..++..+|+++|++|++++||+||++|+..|+++.+..+++....++...+++.|
T Consensus 308 ~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g 387 (452)
T TIGR03452 308 YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTG 387 (452)
T ss_pred ccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCe
Confidence 89999999999999999997642 5677889999999999999999999999999999999888988888777788889
Q ss_pred EEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcC-cCCCCChHHHHHHHHHH
Q 010573 437 IVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARV-CHAHPTMSEALKEAAMA 499 (507)
Q Consensus 437 ~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~-~~~~p~~~~~~~~~~~~ 499 (507)
|+|+++|+++++|||+|++|+++.|+|+.++.||++++|++||.++ +++|||++|++.++++.
T Consensus 388 ~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~ 451 (452)
T TIGR03452 388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLG 451 (452)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999987 67999999999998875
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=576.48 Aligned_cols=449 Identities=39% Similarity=0.628 Sum_probs=396.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
|||+||||||||++||..|+++|++|+|||++ .+||+|.+.||+|+|.+......+....+ ..+|+......++|..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~--~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-PLGGTCVNVGCVPSKMLLRAAEVAHYARK--PPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-cccCCeeeecEEccHHHHHHHHHHHHhhc--cCcccccCCCccCHHH
Confidence 79999999999999999999999999999995 59999999999999999988877766554 2356655556789999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccCCce
Q 010573 124 MMAQKDKAVSNLTR-GIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDEKR 200 (507)
Q Consensus 124 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~~~~ 200 (507)
+..+++.....+.. .+..++++.+|+++.+++.+.+.+.+.+. ++ ...+.||+||||||++|.. +||.. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~--~g-~~~~~~~~lIiATGs~p~~p~i~G~~--~~~ 152 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVD--LG-REVRGAKRFLIATGARPAIPPIPGLK--EAG 152 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEc--CC-eEEEEeCEEEEcCCCCCCCCCCCCcc--cCc
Confidence 99999888888765 36678888999999999998887766553 33 3468999999999999853 45543 335
Q ss_pred EecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
++++.+++.+...+++++|||+|.+|+|+|..|.++|.+|+++++.+++++.+|+++...+++.+++.||+++++++|++
T Consensus 153 ~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 232 (463)
T TIGR02053 153 YLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKA 232 (463)
T ss_pred eECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEE
Confidence 78888887777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
++.+++...+++.. +++++++++|.|++|+|++|+++.+.++..+++++++|+|.||++|||+.|||||+|||++.+.
T Consensus 233 i~~~~~~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~ 310 (463)
T TIGR02053 233 VSVRGGGKIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQ 310 (463)
T ss_pred EEEcCCEEEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCcc
Confidence 98766666665532 1234689999999999999999866678889999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHHHHcCC-CCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEE
Q 010573 361 LAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (507)
+++.|.+||++||.||++. ..++++..+|.++|++|++++||+|+++|++.|+++.+..+++....++.+.+++.+|+|
T Consensus 311 ~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 390 (463)
T TIGR02053 311 LEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIK 390 (463)
T ss_pred cHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEE
Confidence 9999999999999999986 556777889999999999999999999999999999999999999889888788899999
Q ss_pred EEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhcc
Q 010573 440 ILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHD 502 (507)
Q Consensus 440 ~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~ 502 (507)
+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|.+..+++....
T Consensus 391 li~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~~~~ 453 (463)
T TIGR02053 391 LVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQTFYR 453 (463)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999987543
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-72 Score=572.17 Aligned_cols=451 Identities=27% Similarity=0.458 Sum_probs=390.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC-----C---CCCceeccccccchhhhhhhhHHHHHHHhhhhhCCccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-----G---ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF 114 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-----~---~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 114 (507)
.||++|||+||||+.||..+++.|.+|+|||+. . .+||+|.+.||+|+|.++..+...+...+ ...+|+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhh-hhhcCccc
Confidence 489999999999999999999999999999973 1 58999999999999999988887766543 35567765
Q ss_pred Cc-cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--C
Q 010573 115 SS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--L 191 (507)
Q Consensus 115 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~ 191 (507)
.. ..++|.++..+++..+..+...+..+++..+|+++.|.+.+++++.+.|...+|+...+.||+||||||++|.. +
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~i 160 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGI 160 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCC
Confidence 44 57899999999999999998888889999999999999999999988887656655689999999999999853 3
Q ss_pred CCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcE
Q 010573 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 192 pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
||.. ...+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++ +.+++.+|+++.+.+++.|+++||+
T Consensus 161 pG~~---~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~ 236 (484)
T TIGR01438 161 PGAK---ELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVK 236 (484)
T ss_pred CCcc---ceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCE
Confidence 4432 23467777777777889999999999999999999999999999987 5778999999999999999999999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecC-CCCeecCCCCCCCCCCeE
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVNERFATNIPGVY 350 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~G~i~Vd~~~~t~~~~Iy 350 (507)
+++++.+++++..++.+.+++.+. ++.+++++|.|++|+|++||++.+.++..|+++++ +|+|.||+++||++|+||
T Consensus 237 i~~~~~v~~v~~~~~~~~v~~~~~--~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~Iy 314 (484)
T TIGR01438 237 FKRQFVPIKVEQIEAKVKVTFTDS--TNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIY 314 (484)
T ss_pred EEeCceEEEEEEcCCeEEEEEecC--CcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEE
Confidence 999999999987666666665421 11357999999999999999998878889999875 489999999999999999
Q ss_pred EecCCCC-CCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHc-CC-CEEEEEEecCccc
Q 010573 351 AIGDVIP-GPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GV-EYRVGKFPFLANS 426 (507)
Q Consensus 351 A~GD~a~-~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~~-~~~~~~~~~~~~~ 426 (507)
|+|||+. .+.+++.|.+||+.+|+||++.. ...++..+|+.+|++|++++||+||++|++. ++ .+.+...++....
T Consensus 315 A~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~ 394 (484)
T TIGR01438 315 AVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHSYFWPLE 394 (484)
T ss_pred EEEEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEeecchhh
Confidence 9999996 67899999999999999999753 3357888999999999999999999999986 55 6777777777666
Q ss_pred chhhcCC--cceEEEEEEE-CCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHh
Q 010573 427 RAKAIDD--AEGIVKILAE-KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT 500 (507)
Q Consensus 427 ~~~~~~~--~~~~~k~~~~-~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 500 (507)
++....+ +.+|+|++++ +++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++..
T Consensus 395 ~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~~ 471 (484)
T TIGR01438 395 WTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVTK 471 (484)
T ss_pred hHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhhh
Confidence 6555443 6799999996 468999999999999999999999999999999999999999999999999998663
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-72 Score=574.29 Aligned_cols=453 Identities=45% Similarity=0.741 Sum_probs=401.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||+||||||||++||.+|++.|++|+|||+ +.+||+|.+.||+|++.+.+....+....+ ...+|+.......++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~-~~~~gi~~~~~~~~~ 79 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKH-AEEFGIHADGPKIDF 79 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHH-HHhcCCCcCCCccCH
Confidence 359999999999999999999999999999999 789999999999999999988877766544 356676654457899
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CCCCCCCc-cCC
Q 010573 122 PAMMAQKDKAVSNLTRGI-EGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKSLPGIT-IDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~~~pg~~-~~~ 198 (507)
..+..+.+.....+...+ ...++..+++++.+.+.+++.+.+.+ ++ .++.||+||||||++ | .+|+.. ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v---~~--~~~~~d~lIiATGs~~p-~ipg~~~~~~ 153 (460)
T PRK06292 80 KKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV---NG--ERIEAKNIVIATGSRVP-PIPGVWLILG 153 (460)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE---Cc--EEEEeCEEEEeCCCCCC-CCCCCcccCC
Confidence 999999888888777666 56677889999999999888887766 34 679999999999999 5 355543 234
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+++.+++. |++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v 232 (460)
T PRK06292 154 DRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKV 232 (460)
T ss_pred CcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEE
Confidence 4577888888777889999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 279 VGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 279 ~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
++++.+++ .+.++. .+++++++++|.|++++|++|+++.+.++..|++++++|+|.||+++||++|||||+|||++
T Consensus 233 ~~i~~~~~~~v~~~~---~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~ 309 (460)
T PRK06292 233 TSVEKSGDEKVEELE---KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNG 309 (460)
T ss_pred EEEEEcCCceEEEEE---cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCC
Confidence 99986654 344432 12355689999999999999999987678889999988999999999999999999999999
Q ss_pred CCCcHhHHHHHHHHHHHHHcCC-CCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcce
Q 010573 358 GPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG 436 (507)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (507)
.+++++.|..||+.||.||++. ....++..+|+.+|++|++++||+|+++|++.|+++.+..+++....++.+.+++++
T Consensus 310 ~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 389 (460)
T PRK06292 310 KPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDG 389 (460)
T ss_pred CccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCe
Confidence 8889999999999999999984 445677889999999999999999999999999999999999999999888888899
Q ss_pred EEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 437 IVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 437 ~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.+.+++.+
T Consensus 390 ~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~ 459 (460)
T PRK06292 390 FVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFSKLIH 459 (460)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHHhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998877654
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-72 Score=575.77 Aligned_cols=442 Identities=26% Similarity=0.458 Sum_probs=381.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||+||||||||++||..+++.|.+|+|||+ +.+||+|.++||+|+|.++..+.......+ ...+|+... ..++|
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk-~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~Gi~~~-~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEK-DYLGGTCVNVGCVPKKIMFNAASIHDILEN-SRHYGFDTQ-FSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEec-ccccccccccCCCCCchhhhhcccHHHHHH-HHhcCCCcc-CccCH
Confidence 569999999999999999999999999999999 589999999999999999988887665443 355676532 36899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEE--------------------------ccCCceEEE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVD--------------------------TIEGGNTVV 175 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~--------------------------~~~g~~~~~ 175 (507)
..+..+.+..+..+...+.+.+++.+|+++.|.+.+.+++++.|. ..+| ..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g--~~i 201 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDG--QVI 201 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCC--cEE
Confidence 999999999999998888889999999999999999998887641 2344 579
Q ss_pred EeCeEEEccCCCCCC--CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCC
Q 010573 176 KGKNIIIATGSDVKS--LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM 253 (507)
Q Consensus 176 ~~d~lvlAtG~~p~~--~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~ 253 (507)
.||+||||||++|.. +||. ..++++++.+.+.. +++++|||+|++|+|+|..|.++|++||++++.+++++.+
T Consensus 202 ~ad~lVIATGS~P~~P~IpG~----~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~ 276 (561)
T PTZ00058 202 EGKNILIAVGNKPIFPDVKGK----EFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKF 276 (561)
T ss_pred ECCEEEEecCCCCCCCCCCCc----eeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccC
Confidence 999999999999953 3432 23677777776655 9999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~ 332 (507)
|+++.+.+.+.|++.||++++++.+.+++.+++ ++.+.+. ++++++++|.|++|+|++|+++.+.++..++.. +
T Consensus 277 d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~----~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~-~ 351 (561)
T PTZ00058 277 DETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLS----DGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKT-P 351 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEEC----CCCEEEECCEEEECcCCCCCccccCccccceec-C
Confidence 999999999999999999999999999986543 4554442 134579999999999999999987767666654 5
Q ss_pred CCCeecCCCCCCCCCCeEEecCCCC----------------------------------CCCcHhHHHHHHHHHHHHHcC
Q 010573 333 MGRIPVNERFATNIPGVYAIGDVIP----------------------------------GPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 333 ~G~i~Vd~~~~t~~~~IyA~GD~a~----------------------------------~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+|+|.||+++||++|||||+|||++ .+++++.|.+||++||+||++
T Consensus 352 ~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 352 KGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFG 431 (561)
T ss_pred CCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999998 678999999999999999998
Q ss_pred CC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHc-CC-CEEEEEEecCcccchhhc----CCcceEEEEEEECCCCeEEE
Q 010573 379 KH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GV-EYRVGKFPFLANSRAKAI----DDAEGIVKILAEKETDKILG 451 (507)
Q Consensus 379 ~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~~~~~~~ilG 451 (507)
.. ...++..+|+++|++|++|+||+||++|++. |+ ++.+...++....++... .++++++|+++++++++|||
T Consensus 432 ~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG 511 (561)
T PTZ00058 432 PFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKG 511 (561)
T ss_pred CCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEE
Confidence 63 3457788999999999999999999999987 65 577777777766665432 24679999999999999999
Q ss_pred EEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHH
Q 010573 452 VHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAM 498 (507)
Q Consensus 452 ~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~ 498 (507)
+|++|+++.|+|+.++.||++++|++||.+++++|||++|++..++.
T Consensus 512 ~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~ 558 (561)
T PTZ00058 512 LHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAP 558 (561)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhcc
Confidence 99999999999999999999999999999999999999999988764
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-72 Score=586.56 Aligned_cols=449 Identities=32% Similarity=0.498 Sum_probs=391.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..|||+||||||||++||..|++.|.+|+|||++ .+||+|.+.||+|+|.++...+........-...|+.......++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 4699999999999999999999999999999995 899999999999999998888776654432111366544456889
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhC-CcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccC
Q 010573 122 PAMMAQKDKAVSNLTRG-IEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITID 197 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~ 197 (507)
.++..+++..+..+... +...+++. +|+++.+.+.+++.+.+.|.+.+|+...+.||+||||||++|.. +||..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~-- 253 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK-- 253 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCC--
Confidence 99999888887776543 55666665 89999999999999999998777655679999999999999853 44433
Q ss_pred CceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCce
Q 010573 198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
...+++..+.+.....+++++|||+|++|+|+|..|.++|.+|+++++. .+++.+|+++.+.+++.|++.||++++++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~ 332 (561)
T PRK13748 254 ETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ 332 (561)
T ss_pred ccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence 3345666666656667899999999999999999999999999999985 467778999999999999999999999999
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 278 v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
+++++.+++.+.+... + .++++|.|++|+|++||+..+.++..|++++++|+|.||+++||++|||||+|||++
T Consensus 333 v~~i~~~~~~~~v~~~-----~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~ 406 (561)
T PRK13748 333 ASQVAHVDGEFVLTTG-----H-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTD 406 (561)
T ss_pred EEEEEecCCEEEEEec-----C-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCC
Confidence 9999876666555432 2 369999999999999999877678889999999999999999999999999999999
Q ss_pred CCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceE
Q 010573 358 GPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI 437 (507)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (507)
.+.+.+.|..||++||.||++....+++..+|.++|++|++++||+|+++|+..|+++.+..+++....++....++++|
T Consensus 407 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 486 (561)
T PRK13748 407 QPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF 486 (561)
T ss_pred CccchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeE
Confidence 99999999999999999999877667888899999999999999999999999999999999988888877666667899
Q ss_pred EEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHh
Q 010573 438 VKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT 500 (507)
Q Consensus 438 ~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 500 (507)
+|+++|+++++|||+|++|+++.|+|+.++++|++++|++||.+++++|||++|++.++++..
T Consensus 487 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~ 549 (561)
T PRK13748 487 IKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTF 549 (561)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998754
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-71 Score=563.49 Aligned_cols=457 Identities=53% Similarity=0.859 Sum_probs=409.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
.|||+||||||||++||.+|++.|++|+|||+ +.+||+|.+.||+|++.+......+..+.+ ...+++......++|.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~-~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKH-AKDYGIEVENVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHH-HHhcCCCCCCCcCCHH
Confidence 38999999999999999999999999999999 899999999999999999988888777663 6677876666678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCC-CccCCceE
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG-ITIDEKRI 201 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg-~~~~~~~~ 201 (507)
.+..+.+....++...+..++++.+++++.+++.+++++.+.+...++ ...+.||+||||||++|..+|. ...+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g-~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~ 157 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENG-EETLTAKNIIIATGSRPRSLPGPFDFDGEVV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCC-cEEEEeCEEEEcCCCCCCCCCCCCCCCCceE
Confidence 999998888888888888889999999999999999999988886554 2579999999999999975554 34444568
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+++.+...+...+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++++++
T Consensus 158 ~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i 237 (461)
T TIGR01350 158 ITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV 237 (461)
T ss_pred EcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 88888888777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCc
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~ 361 (507)
+.+++++.+.+. ++..+++++|.+++|+|.+|++..+.++..++.++++|+|.||+++||+.|+|||+|||++.+.+
T Consensus 238 ~~~~~~v~v~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~~ 314 (461)
T TIGR01350 238 EKNDDQVVYENK---GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPML 314 (461)
T ss_pred EEeCCEEEEEEe---CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCccc
Confidence 877777766543 22235799999999999999998655788899999999999999999999999999999998899
Q ss_pred HhHHHHHHHHHHHHHcCCCC-CCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEE
Q 010573 362 AHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 440 (507)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 440 (507)
++.|..||+.||+||.+... .+++...|.+.|++|+++++|+++++++..|+++.+..+++....++.+.+++.+|+|+
T Consensus 315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl 394 (461)
T TIGR01350 315 AHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKI 394 (461)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEE
Confidence 99999999999999997654 56778899999999999999999999999999999999998888888877788999999
Q ss_pred EEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCC
Q 010573 441 LAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPI 505 (507)
Q Consensus 441 ~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~ 505 (507)
++|+++++|||+|++|+++.|+|+.++.||++++|++||.+++++|||++|++..+++.+..+..
T Consensus 395 ~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~~ 459 (461)
T TIGR01350 395 IADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALAALGKPI 459 (461)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999987765533
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-71 Score=560.59 Aligned_cols=432 Identities=30% Similarity=0.519 Sum_probs=375.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC-CCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.|||+||||||||++||.+|+++|++|+|||+.+ .+||+|.+.+|+|++.+..... ...+|
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------------------~~~~~ 64 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------------------QHTDF 64 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhc------------------cCCCH
Confidence 5999999999999999999999999999999965 5899999999999987654321 02466
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGI-EGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~~~ 198 (507)
.....+.+..+..+.... ..+.+..+++++.+++.+++.+.+.|.+.++ ..++.||+||||||++|. .+||... .
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g-~~~~~~d~lviATGs~p~~p~i~G~~~-~ 142 (441)
T PRK08010 65 VRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEG-NLEIHGEKIFINTGAQTVVPPIPGITT-T 142 (441)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCC-eEEEEeCEEEEcCCCcCCCCCCCCccC-C
Confidence 666666666655554322 3334455999999999999999988887666 246999999999999985 4455431 2
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..++++.+++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.+++.||++++++++
T Consensus 143 ~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v 222 (441)
T PRK08010 143 PGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHV 222 (441)
T ss_pred CCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 34677777777777799999999999999999999999999999999999999899999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~ 358 (507)
++++.+++.+.+... + .++++|.|++|+|++|+++.+.++..|++++++|+|.||+++||++|||||+|||++.
T Consensus 223 ~~i~~~~~~v~v~~~-----~-g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~ 296 (441)
T PRK08010 223 ERISHHENQVQVHSE-----H-AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGG 296 (441)
T ss_pred EEEEEcCCEEEEEEc-----C-CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCC
Confidence 999876666655532 2 3589999999999999998766778899999889999999999999999999999999
Q ss_pred CCcHhHHHHHHHHHHHHHcCC-CC-CCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcce
Q 010573 359 PMLAHKAEEDGVACVEFLAGK-HG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG 436 (507)
Q Consensus 359 ~~~~~~A~~~g~~aa~~i~~~-~~-~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (507)
+++++.|..||+++++||+++ .. ...+..+|.++|++|++++||+||++|++.|+++.+..+++....++.+++++.|
T Consensus 297 ~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 376 (441)
T PRK08010 297 LQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRG 376 (441)
T ss_pred ccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCce
Confidence 999999999999999999985 22 2467789999999999999999999999999999999999999999988888899
Q ss_pred EEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHh
Q 010573 437 IVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT 500 (507)
Q Consensus 437 ~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 500 (507)
|+|+++|+++++|||+|++|+++.|+|+.++.+|++++|+++|.+.+++|||++|.+.+++..+
T Consensus 377 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~ 440 (441)
T PRK08010 377 VLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLV 440 (441)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999987653
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=559.44 Aligned_cols=446 Identities=28% Similarity=0.410 Sum_probs=377.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC--------CCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK 113 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~--------~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 113 (507)
.+|||+||||||||++||.+|+++|++|+|||+.. .+||+|.+.||+|+|.+................+|+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~ 83 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK 83 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence 36999999999999999999999999999999631 4899999999999999888888777665444556776
Q ss_pred cCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCC
Q 010573 114 FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg 193 (507)
... ..+|..+..+.+..+..+...+...++..+|+++.+.+.+.+.+.+.+... ++...+.||+||||||++|..++.
T Consensus 84 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~-~~~~~i~~d~lIIATGs~p~~p~~ 161 (499)
T PTZ00052 84 TSS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDN-SQEETITAKYILIATGGRPSIPED 161 (499)
T ss_pred CCC-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeC-CCceEEECCEEEEecCCCCCCCCC
Confidence 444 789999999999998888777777778889999999999988888777532 223679999999999999863322
Q ss_pred CccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 010573 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273 (507)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~ 273 (507)
++......+++++++.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+|+++.+.+++.|++.||+++
T Consensus 162 i~G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~l~~~GV~i~ 240 (499)
T PTZ00052 162 VPGAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRGFDRQCSEKVVEYMKEQGTLFL 240 (499)
T ss_pred CCCccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc-CcccccCCHHHHHHHHHHHHHcCCEEE
Confidence 2211223567778877777789999999999999999999999999999987 466788999999999999999999999
Q ss_pred cCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEec
Q 010573 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353 (507)
Q Consensus 274 ~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~G 353 (507)
+++.+++++..++.+.+.+. +++++++|.|++++|++||++++.++..+++++++|++.+++. +|++|+|||+|
T Consensus 241 ~~~~v~~v~~~~~~~~v~~~-----~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiG 314 (499)
T PTZ00052 241 EGVVPINIEKMDDKIKVLFS-----DGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVG 314 (499)
T ss_pred cCCeEEEEEEcCCeEEEEEC-----CCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEE
Confidence 99999999876656666654 3457899999999999999998777888999999898777777 99999999999
Q ss_pred CCCC-CCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCcccchh
Q 010573 354 DVIP-GPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAK 429 (507)
Q Consensus 354 D~a~-~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 429 (507)
||+. .+.+++.|.+||+.+|+||++.. ...++..+|+++|++|++++||+||++|++. + .++.+..+++.....+.
T Consensus 315 Dv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~ 394 (499)
T PTZ00052 315 DVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAA 394 (499)
T ss_pred EecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEEeecccchhhc
Confidence 9994 67899999999999999999754 3357888999999999999999999999987 4 46888777765433222
Q ss_pred hc---------------CCcceEEEEEEEC-CCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHH
Q 010573 430 AI---------------DDAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493 (507)
Q Consensus 430 ~~---------------~~~~~~~k~~~~~-~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~ 493 (507)
.. .+++||+|+++++ ++++|||+|++|++|.|+|+.+++||++++|++||.+++++|||++|++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~ 474 (499)
T PTZ00052 395 VHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVF 474 (499)
T ss_pred cccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhh
Confidence 11 1267999999997 4899999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 010573 494 KEA 496 (507)
Q Consensus 494 ~~~ 496 (507)
..+
T Consensus 475 ~~~ 477 (499)
T PTZ00052 475 MNL 477 (499)
T ss_pred EEE
Confidence 655
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-69 Score=548.43 Aligned_cols=429 Identities=31% Similarity=0.522 Sum_probs=376.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC-CCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA-LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~-~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.|||+||||||||++||..|++.|++|+|||+++. +||+|.+.+|+|++.++..... ..+|
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~------------------~~~~ 64 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEK------------------NLSF 64 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhc------------------CCCH
Confidence 59999999999999999999999999999999764 7999999999999887654431 2467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCccCCc
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEK 199 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~~~~ 199 (507)
.++..+.+....++.....+.+.+.+|+++.+++.+++.+.+.+...+ +...+.||+||||||++|. .+||.. ...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~-~~~~~~~d~vViATGs~~~~p~i~G~~-~~~ 142 (438)
T PRK07251 65 EQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGD-EKIELTAETIVINTGAVSNVLPIPGLA-DSK 142 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCC-CcEEEEcCEEEEeCCCCCCCCCCCCcC-CCC
Confidence 777777777777776666677888999999999999888877776422 2357999999999999985 445543 234
Q ss_pred eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 200 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
.++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++..++++.+.+.+.+++.||+++++++++
T Consensus 143 ~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~ 222 (438)
T PRK07251 143 HVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTT 222 (438)
T ss_pred cEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 57888888877778999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~ 359 (507)
+++.+++.+.+.. +++++++|.+++|+|++|+++.+.++..++.++++|+|.||+++||++|||||+|||++.+
T Consensus 223 ~i~~~~~~v~v~~------~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~ 296 (438)
T PRK07251 223 EVKNDGDQVLVVT------EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGP 296 (438)
T ss_pred EEEecCCEEEEEE------CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCc
Confidence 9987665555542 3468999999999999999988777777888888899999999999999999999999999
Q ss_pred CcHhHHHHHHHHHHHHHcCCCC--CCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceE
Q 010573 360 MLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI 437 (507)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (507)
.+.+.|..+|+.++.++++... ...+..+|+.+|++|+++++|+|+++++..|+++.+..+++....++...++.+|+
T Consensus 297 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 376 (438)
T PRK07251 297 QFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGA 376 (438)
T ss_pred ccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEE
Confidence 9999999999999999987643 23566799999999999999999999999999999999999888888777888899
Q ss_pred EEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 438 VKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 438 ~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
+|+++|+++++|||+|++|+++.|+|+.++.||++++|+++|.+++++|||++|.+.++.
T Consensus 377 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 377 FKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998764
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=493.92 Aligned_cols=448 Identities=32% Similarity=0.512 Sum_probs=402.6
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCccc-C
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-S 115 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~-~ 115 (507)
++.....||++|||||..|+++|.++++.|.++.|+|..-.+||+|.+.||+|.+.+++.+.....+.+ ...+|++. .
T Consensus 14 ~a~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~d-a~~yG~~~~~ 92 (478)
T KOG0405|consen 14 MAADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMED-AKDYGFPINE 92 (478)
T ss_pred ccccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhh-hhhcCCcccc
Confidence 666677899999999999999999999999999999996699999999999999999887766555544 47788877 4
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC--CCCCC
Q 010573 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV--KSLPG 193 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p--~~~pg 193 (507)
...++|..+.+.++..+.++...++..+.+..|+++.|.+.++++..+.|+..++....+++++++||||++| |.+||
T Consensus 93 ~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG 172 (478)
T KOG0405|consen 93 EGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPG 172 (478)
T ss_pred ccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCc
Confidence 6789999999999999999999999999999999999999999999999999888667799999999999999 46676
Q ss_pred CccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 010573 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273 (507)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~ 273 (507)
.+ .-++++.++++++.|++++|||+|++++|+|..|+.+|++++++.|.+.+++.||+.+++.+.+.|+..||++|
T Consensus 173 ~E----~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh 248 (478)
T KOG0405|consen 173 AE----LGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVH 248 (478)
T ss_pred hh----hccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeec
Confidence 44 45788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEec
Q 010573 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353 (507)
Q Consensus 274 ~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~G 353 (507)
.++.++++....++..+...+ .+....+|.++||+|+.|++..|++++.|++++.+|.|.||++.+||+|+||++|
T Consensus 249 ~~s~~~~v~K~~~g~~~~i~~----~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avG 324 (478)
T KOG0405|consen 249 KNSSVTKVIKTDDGLELVITS----HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVG 324 (478)
T ss_pred ccccceeeeecCCCceEEEEe----ccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEec
Confidence 999999998776664433322 3345559999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHhHHHHHHHHHHHHHcC--CCCCCCCCCccEEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCcccchh
Q 010573 354 DVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAK 429 (507)
Q Consensus 354 D~a~~~~~~~~A~~~g~~aa~~i~~--~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 429 (507)
|+++...+++.|+..|+..++.+++ ++.+.+|+.+|+++|+.|+++.||+||+||.++ | -++++..-.|.....+.
T Consensus 325 Dv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~ 404 (478)
T KOG0405|consen 325 DVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAM 404 (478)
T ss_pred cccCcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCCchhHhHh
Confidence 9999999999999999999999996 456689999999999999999999999999765 3 45555554455566666
Q ss_pred hcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHH
Q 010573 430 AIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493 (507)
Q Consensus 430 ~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~ 493 (507)
.......++||++..++.+++|+|++|+++.|+++-|+.|+++|+|-.|+.+...+|||.+|.|
T Consensus 405 ~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEEl 468 (478)
T KOG0405|consen 405 SGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEEL 468 (478)
T ss_pred hcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHHh
Confidence 6566778999999999999999999999999999999999999999999999999999999976
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-59 Score=418.94 Aligned_cols=452 Identities=31% Similarity=0.521 Sum_probs=377.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC--------CCCCceeccccccchhhhhhhhHHHHHHHhhhhhCC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG 111 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~--------~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 111 (507)
.+.+||++|||||.+||+||.+++..|.+|.++|-- ..+||+|.|.||||.+.+. .+.+.....+....+|
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMH-QAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMH-QAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHH-HHHHHHHHHHHHHhhC
Confidence 356799999999999999999999999999999841 1457999999999988664 4555566666678888
Q ss_pred cccCc--cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 112 VKFSS--VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 112 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
+...+ ...+|..+.......+..+...++-.+++..|+++...+.|+|+++...+..+|+.+.++++.++||||.+|+
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR 174 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence 87754 6789998887776666666555556677788999999999999999999988888899999999999999995
Q ss_pred --CCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh
Q 010573 190 --SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267 (507)
Q Consensus 190 --~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~ 267 (507)
.+|| +.+.-+|++|.+.+...|.+-+|||+|++++|+|.+|..+|.+||+..|+ .+++.||.++++.+.+.|++
T Consensus 175 Yp~IpG---~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~ 250 (503)
T KOG4716|consen 175 YPDIPG---AKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEE 250 (503)
T ss_pred CCCCCC---ceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecccccHHHHHHHHHHHHH
Confidence 4555 34677899999999999999999999999999999999999999998875 46889999999999999999
Q ss_pred cCcEEEcCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecC-CCCeecCCCCCCC
Q 010573 268 QKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVNERFATN 345 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~G~i~Vd~~~~t~ 345 (507)
.||+|...+.+.+++..++ ...|......+++..+-++|.|+||+|+.+.+..++++.+|++.++ .|.|.||+.-+||
T Consensus 251 ~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~ 330 (503)
T KOG4716|consen 251 RGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATN 330 (503)
T ss_pred hCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcC
Confidence 9999998888888876544 4455555444555556789999999999999999999999999964 5889999999999
Q ss_pred CCCeEEecCCC-CCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHc-CCC-EEEEEEe
Q 010573 346 IPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVE-YRVGKFP 421 (507)
Q Consensus 346 ~~~IyA~GD~a-~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~~~-~~~~~~~ 421 (507)
+|+|||+||.. +.|.+.+.|++.|+..|+.+.+.. ...+|..+|+.+|+..|++.+|++|++|.+. |-+ .++.+--
T Consensus 331 vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~ 410 (503)
T KOG4716|consen 331 VPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSY 410 (503)
T ss_pred CCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEEEeecc
Confidence 99999999999 568899999999999999998654 4468999999999999999999999988653 433 3333311
Q ss_pred cCcccchhhc-CCcceEEEEEEEC-CCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHH
Q 010573 422 FLANSRAKAI-DDAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEA 496 (507)
Q Consensus 422 ~~~~~~~~~~-~~~~~~~k~~~~~-~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~ 496 (507)
|.......-. +....|+|++..+ ++.+|+|.|++|++|.|+++-++.|++.|+|..+|.+++.+||+.+|.|..+
T Consensus 411 f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~L 487 (503)
T KOG4716|consen 411 FKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTL 487 (503)
T ss_pred ccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhheeEE
Confidence 2221111111 2345799999973 6679999999999999999999999999999999999999999999987543
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=458.44 Aligned_cols=400 Identities=20% Similarity=0.304 Sum_probs=310.6
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccc-cchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.+|||||||+||++||.+|++. +.+|+|||+++.++- ..| +|... . ..+. .
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~----~~~~lp~~~---------------~-~~~~------~ 55 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSF----ANCALPYYI---------------G-EVVE------D 55 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCccc----ccCCcchhh---------------c-CccC------C
Confidence 4899999999999999999987 689999999765431 111 11100 0 0000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEE-eEEEEecCCEEEEEccCC---ceEEEEeCeEEEccCCCCCCCCCCcc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK-GYGKFISPSEVSVDTIEG---GNTVVKGKNIIIATGSDVKSLPGITI 196 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~d~~~~~v~~~~g---~~~~~~~d~lvlAtG~~p~~~pg~~~ 196 (507)
.... +....+.++++.+++++. .++..+|.+...|.+.++ +...+.||+||||||++|..++ .+
T Consensus 56 ~~~~----------~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~-~~- 123 (438)
T PRK13512 56 RKYA----------LAYTPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG-FE- 123 (438)
T ss_pred HHHc----------ccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC-CC-
Confidence 0000 000012345667899876 477888877766665442 2346799999999999996544 32
Q ss_pred CCceEecc---hhhccc-----cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc
Q 010573 197 DEKRIVSS---TGALAL-----NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (507)
Q Consensus 197 ~~~~~~~~---~~~~~~-----~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~ 268 (507)
...+++. .+...+ ...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+|+++.+.+.+.|++.
T Consensus 124 -~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~ 202 (438)
T PRK13512 124 -SDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKR 202 (438)
T ss_pred -CCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhc
Confidence 2333433 222221 2347999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCC
Q 010573 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~ 348 (507)
||++++++++++++. . .+++. +++++++|.|++|+|++|++++ ++..|++++++|+|.||+++||+.||
T Consensus 203 gI~i~~~~~v~~i~~--~--~v~~~-----~g~~~~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i~Vd~~~~t~~~~ 271 (438)
T PRK13512 203 EIPYRLNEEIDAING--N--EVTFK-----SGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDDKGFIPVNDKFETNVPN 271 (438)
T ss_pred CCEEEECCeEEEEeC--C--EEEEC-----CCCEEEeCEEEECcCCCcChHH--HHhcCcccCCCCcEEECCCcccCCCC
Confidence 999999999999953 2 34443 3457999999999999999987 57788998888999999999999999
Q ss_pred eEEecCCCC----------CCCcHhHHHHHHHHHHHHHcCCCC-CC-CCCCccEEEEcCCCeeeecCCHHHHHHcCCCEE
Q 010573 349 VYAIGDVIP----------GPMLAHKAEEDGVACVEFLAGKHG-HV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416 (507)
Q Consensus 349 IyA~GD~a~----------~~~~~~~A~~~g~~aa~~i~~~~~-~~-~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~ 416 (507)
|||+|||++ .+++++.|.+||+++|+||+|... .+ .+..+|.+.|++|+++++|+|+++++.. ++.
T Consensus 272 IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~--~~~ 349 (438)
T PRK13512 272 IYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF--DYK 349 (438)
T ss_pred EEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHHHHccC--CcE
Confidence 999999985 235788899999999999998643 22 4567889999999999999999999876 466
Q ss_pred EEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHhcC-cCCCCChHHHHH
Q 010573 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAVLAINYDASSEDIARV-CHAHPTMSEALK 494 (507)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~~-~~~~p~~~~~~~ 494 (507)
+..+++....+.. .+++.||+|+++|+++++|||+|++|++ +.|+|+.++++|++++|++||.++ .++||+++...+
T Consensus 350 ~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~ 428 (438)
T PRK13512 350 MVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKD 428 (438)
T ss_pred EEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCcccc
Confidence 6666655444433 4667899999999999999999999996 889999999999999999999997 678999996543
Q ss_pred HH
Q 010573 495 EA 496 (507)
Q Consensus 495 ~~ 496 (507)
.+
T Consensus 429 ~~ 430 (438)
T PRK13512 429 LI 430 (438)
T ss_pred HH
Confidence 33
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=453.96 Aligned_cols=407 Identities=27% Similarity=0.332 Sum_probs=312.7
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccc-cchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+|||||||+||+++|..|++.+ .+|+|||+++.++.. .| +|.. . .+. .+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~----~~~~~~~----~-------------~~~------~~~ 54 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFG----ACGLPYF----V-------------GGF------FDD 54 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceee----cCCCceE----e-------------ccc------cCC
Confidence 7999999999999999999975 589999997655311 01 1100 0 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccC---CceEEEEeCeEEEccCCCCC--CCCCCc
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIE---GGNTVVKGKNIIIATGSDVK--SLPGIT 195 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~---g~~~~~~~d~lvlAtG~~p~--~~pg~~ 195 (507)
...+.....+.+++.+++++.+ .+..+|.+...+.+.+ ++...+.||+||||||++|. .+|+..
T Consensus 55 ----------~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~ 124 (444)
T PRK09564 55 ----------PNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNIN 124 (444)
T ss_pred ----------HHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcC
Confidence 0001111124456679998765 6777765554454432 32223449999999999985 445543
Q ss_pred cCCceEecc---hhhcccc-----CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHH
Q 010573 196 IDEKRIVSS---TGALALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLE 266 (507)
Q Consensus 196 ~~~~~~~~~---~~~~~~~-----~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~ 266 (507)
. ..+++. .+...+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.++
T Consensus 125 ~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~ 202 (444)
T PRK09564 125 L--ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELR 202 (444)
T ss_pred C--CCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHH
Confidence 2 234433 2333322 2479999999999999999999999999999999988876 689999999999999
Q ss_pred hcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCC
Q 010573 267 KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNI 346 (507)
Q Consensus 267 ~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~ 346 (507)
+.||++++++++++++.+++...+.. ++.++++|.+++|+|++|++++ ++..|++++++|+|.||+++||+.
T Consensus 203 ~~gI~v~~~~~v~~i~~~~~~~~v~~------~~~~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~ 274 (444)
T PRK09564 203 ENGVELHLNEFVKSLIGEDKVEGVVT------DKGEYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAIIVDEYGETSI 274 (444)
T ss_pred HCCCEEEcCCEEEEEecCCcEEEEEe------CCCEEEcCEEEECcCCCcCHHH--HHhcCccccCCCCEEECCCcccCC
Confidence 99999999999999965443333333 2346999999999999999886 678889888889999999999999
Q ss_pred CCeEEecCCCCC----------CCcHhHHHHHHHHHHHHHcCCCCCCCCCCcc-EEEEcCCCeeeecCCHHHHHHcCCCE
Q 010573 347 PGVYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHVDYDKVP-GVVYTHPEVASVGKTEEQVKELGVEY 415 (507)
Q Consensus 347 ~~IyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p-~~~~~~~~~~~vG~~~~~~~~~~~~~ 415 (507)
|||||+|||++. +++++.|.+||+++|+||++....++....+ .+.|++|+++++|+|++++++.|+++
T Consensus 275 ~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~ 354 (444)
T PRK09564 275 ENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTEEEAKKLGIDY 354 (444)
T ss_pred CCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCHHHHHHCCCCe
Confidence 999999999953 4588999999999999999876555444444 45589999999999999999999999
Q ss_pred EEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHhcCcCCC-CChHHHH
Q 010573 416 RVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAVLAINYDASSEDIARVCHAH-PTMSEAL 493 (507)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~~~~~~-p~~~~~~ 493 (507)
.+.+++.. ..++...+.+.+|+|+++|+++++|||+|++|++ +.++|+.++++|++++|+++|++++++| |+++|.+
T Consensus 355 ~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~ 433 (444)
T PRK09564 355 KTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW 433 (444)
T ss_pred EEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence 99887643 3444445667899999999999999999999996 8899999999999999999999998776 9999887
Q ss_pred HHHHHH
Q 010573 494 KEAAMA 499 (507)
Q Consensus 494 ~~~~~~ 499 (507)
+.+...
T Consensus 434 ~~~~~~ 439 (444)
T PRK09564 434 DALNVA 439 (444)
T ss_pred CHHHHH
Confidence 665433
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=398.16 Aligned_cols=344 Identities=22% Similarity=0.296 Sum_probs=276.8
Q ss_pred HHHHhCCcEEEEe-EEEEecCCEEEEEccCC-ceEEEE--eCeEEEccCCCCCC--CCCCccCCceEecchhh---ccc-
Q 010573 141 GLFKKNKVTYVKG-YGKFISPSEVSVDTIEG-GNTVVK--GKNIIIATGSDVKS--LPGITIDEKRIVSSTGA---LAL- 210 (507)
Q Consensus 141 ~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g-~~~~~~--~d~lvlAtG~~p~~--~pg~~~~~~~~~~~~~~---~~~- 210 (507)
.++++.+++++.+ .+..+|.....+.+.++ ....+. ||+||||||++|.. +||.. ...+++..+. ..+
T Consensus 52 ~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~--~~~v~~~~~~~~~~~~~ 129 (427)
T TIGR03385 52 VFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGIN--LDIVFTLRNLEDTDAIK 129 (427)
T ss_pred HHHHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcC--CCCEEEECCHHHHHHHH
Confidence 3457779998755 67777755544444321 124566 99999999999853 45543 2334443332 211
Q ss_pred ----cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcC
Q 010573 211 ----NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG 285 (507)
Q Consensus 211 ----~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 285 (507)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.+ .+.+++++.+.+.+.+++.||++++++.+++++.++
T Consensus 130 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 209 (427)
T TIGR03385 130 QYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE 209 (427)
T ss_pred HHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC
Confidence 134789999999999999999999999999999999887 467899999999999999999999999999997544
Q ss_pred CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC-------
Q 010573 286 DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG------- 358 (507)
Q Consensus 286 ~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~------- 358 (507)
. + +.+. +++++++|.+++|+|.+|++++ ++.+|++++++|+|.||+++||+.|+|||+|||+..
T Consensus 210 ~-~-v~~~-----~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~ 280 (427)
T TIGR03385 210 R-V-KVFT-----SGGVYQADMVILATGIKPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKK 280 (427)
T ss_pred C-E-EEEc-----CCCEEEeCEEEECCCccCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCC
Confidence 3 3 3333 3467999999999999999986 577889998889999999999999999999999952
Q ss_pred ---CCcHhHHHHHHHHHHHHHcCCCCCCC-CCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCc
Q 010573 359 ---PMLAHKAEEDGVACVEFLAGKHGHVD-YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDA 434 (507)
Q Consensus 359 ---~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (507)
+++++.|.+||++||+||++....++ +..+|.++|++|+++++|+|+.+|++.|+++.+..+++....++. .+.+
T Consensus 281 ~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~-~~~~ 359 (427)
T TIGR03385 281 PAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYY-PGNS 359 (427)
T ss_pred ceeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcC-CCCc
Confidence 35789999999999999998754332 225788999999999999999999999999998887655444433 3567
Q ss_pred ceEEEEEEECCCCeEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHhcCcC-CCCChHHHHHHH
Q 010573 435 EGIVKILAEKETDKILGVHIMAPN-AGELIHEAVLAINYDASSEDIARVCH-AHPTMSEALKEA 496 (507)
Q Consensus 435 ~~~~k~~~~~~~~~ilG~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~~~~-~~p~~~~~~~~~ 496 (507)
.|++|+++++++++|||+|++|++ +.|+|+.++++|++++|+++|.++++ .||.++..++.+
T Consensus 360 ~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~~~~ 423 (427)
T TIGR03385 360 PLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWDPL 423 (427)
T ss_pred eEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCccchH
Confidence 899999999989999999999998 99999999999999999999999985 489888655443
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=393.59 Aligned_cols=384 Identities=20% Similarity=0.307 Sum_probs=288.2
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
.+|||||+|+||+.+|.+|++. +++|+||++++.++.. .+..+. .+.. ..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~----r~~L~~--------------~~~~--~~------ 57 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYD----RVHLSS--------------YFSH--HT------ 57 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCccc----CCcchH--------------hHcC--CC------
Confidence 4899999999999999999865 4799999997664311 000000 0000 00
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCcc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITI 196 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~ 196 (507)
.+.+......++++.+|+++.++ +..+|.+...|.+.+| ..+.||+||||||++|. ++||...
T Consensus 58 ------------~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~ipG~~~ 123 (847)
T PRK14989 58 ------------AEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPIKGSET 123 (847)
T ss_pred ------------HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCCCCCCC
Confidence 01111222456778899999985 6778888888888777 67999999999999985 4566543
Q ss_pred CCceEe-cchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCcE
Q 010573 197 DEKRIV-SSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 197 ~~~~~~-~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv~ 271 (507)
.+...+ +..++..+. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+|++..+.+.+.|++.||+
T Consensus 124 ~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~ 203 (847)
T PRK14989 124 QDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVR 203 (847)
T ss_pred CCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCE
Confidence 333333 555554432 3578999999999999999999999999999999999877 68999999999999999999
Q ss_pred EEcCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCe
Q 010573 272 FMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349 (507)
Q Consensus 272 i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~I 349 (507)
+++++.++++..++ ....+.+. +++++++|.|++|+|++|++.+ ++.+|++++++|+|.||++|||+.|+|
T Consensus 204 v~~~~~v~~I~~~~~~~~~~v~~~-----dG~~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I~VD~~l~Ts~p~I 276 (847)
T PRK14989 204 VHTSKNTLEIVQEGVEARKTMRFA-----DGSELEVDFIVFSTGIRPQDKL--ATQCGLAVAPRGGIVINDSCQTSDPDI 276 (847)
T ss_pred EEcCCeEEEEEecCCCceEEEEEC-----CCCEEEcCEEEECCCcccCchH--HhhcCccCCCCCcEEECCCCcCCCCCE
Confidence 99999999997543 23345554 5678999999999999999985 678899999999999999999999999
Q ss_pred EEecCCCCCC----CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEE-EcCCCeeeecCCHHHHHHcCCCEEEEEEecCc
Q 010573 350 YAIGDVIPGP----MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV-YTHPEVASVGKTEEQVKELGVEYRVGKFPFLA 424 (507)
Q Consensus 350 yA~GD~a~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~-~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~ 424 (507)
||+|||+..+ .++..|..||++||.||+|....+.....+... +...+++++|... +.+ .
T Consensus 277 YAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~~g~~~~~~lk~~G~~v~s~G~~~------~~~---------~ 341 (847)
T PRK14989 277 YAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLSAKLKLLGVDVGGIGDAH------GRT---------P 341 (847)
T ss_pred EEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCCCCcccceEEEECCcceEeccccc------CCC---------C
Confidence 9999999643 378899999999999999987655555556433 4455788877311 110 0
Q ss_pred ccchh-hcC-CcceEEEEEEECCCCeEEEEEEECCCh--HHHHHHHHHHHHCCCCHHHHhcCcCC---CCCh
Q 010573 425 NSRAK-AID-DAEGIVKILAEKETDKILGVHIMAPNA--GELIHEAVLAINYDASSEDIARVCHA---HPTM 489 (507)
Q Consensus 425 ~~~~~-~~~-~~~~~~k~~~~~~~~~ilG~~~~g~~~--~~~~~~~~~~i~~~~~~~~l~~~~~~---~p~~ 489 (507)
...+. +.+ ...+|.|+++++++++|+|++++|+.+ .++++.+...+..+.+.++|....+. ||+.
T Consensus 342 ~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 413 (847)
T PRK14989 342 GARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSI 413 (847)
T ss_pred CceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCCCCCCCCcc
Confidence 01111 123 346899999998899999999999954 67777776666666677777655443 6766
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=346.49 Aligned_cols=362 Identities=19% Similarity=0.242 Sum_probs=261.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..+|||||||+||++||..|++.+. +|+||+++...... .+.-++.+ +.... ......
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~----r~~l~~~~-------------~~~~~--~~~~~~- 62 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYE----RPPLSKSM-------------LLEDS--PQLQQV- 62 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCC----CCCCCHHH-------------HCCCC--cccccc-
Confidence 3589999999999999999999875 79999996543210 00000000 00000 000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~ 199 (507)
...+++.+.+++++.+ .+..+|.....+.+.+| ..+.||+||||||++|..+|.......
T Consensus 63 -----------------~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~~~~~~~ 123 (396)
T PRK09754 63 -----------------LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPLLDALGE 123 (396)
T ss_pred -----------------CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCCCCcCCC
Confidence 0124566789999988 46788888777877777 679999999999999976665443334
Q ss_pred eEec---chhhccccC---CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCcEE
Q 010573 200 RIVS---STGALALNE---VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 200 ~~~~---~~~~~~~~~---~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv~i 272 (507)
.+++ ..++..+.. .+++++|||+|++|+|+|..|.+.|.+||++++.+++++ .+++++.+.+.+.+++.||++
T Consensus 124 ~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i 203 (396)
T PRK09754 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRI 203 (396)
T ss_pred CEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEE
Confidence 4554 445544432 478999999999999999999999999999999998876 468888899999999999999
Q ss_pred EcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEe
Q 010573 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~ 352 (507)
++++.+++++. ++.+.+++. +++++++|.|++++|.+|++.+ ++..|++.+ ++|.||+++||+.|||||+
T Consensus 204 ~~~~~V~~i~~-~~~~~v~l~-----~g~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd~~~~ts~~~IyA~ 273 (396)
T PRK09754 204 LLNNAIEHVVD-GEKVELTLQ-----SGETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAIFAG 273 (396)
T ss_pred EeCCeeEEEEc-CCEEEEEEC-----CCCEEECCEEEECCCCChhhHH--HHhcCCCcC--CCEEECCCCccCCCCEEEc
Confidence 99999999975 445556554 4568999999999999999875 456677664 5699999999999999999
Q ss_pred cCCCCC---------CCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEE--EcCCCeeeecCCHHHHHHcCCCEEEEEEe
Q 010573 353 GDVIPG---------PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVEYRVGKFP 421 (507)
Q Consensus 353 GD~a~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~vG~~~~~~~~~~~~~~~~~~~ 421 (507)
|||+.. +.+|+.|..||++||+||+|.... +...|+++ .++..+.++|....+ ++ ...
T Consensus 274 GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~--~~~~p~~~~~~~~~~~~~~G~~~~~------~~-~~~-- 342 (396)
T PRK09754 274 GDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLP--LLPPPWFWSDQYSDNLQFIGDMRGD------DW-LCR-- 342 (396)
T ss_pred cceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCC--CCCCCceEEEeCCccEEEeeCCCCC------EE-EEe--
Confidence 999942 136789999999999999987643 55555543 445688888865431 11 000
Q ss_pred cCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCH
Q 010573 422 FLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASS 476 (507)
Q Consensus 422 ~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~ 476 (507)
...+...|+.+++ ++|+|+|+..+|+. .-...+..+|+.+.++
T Consensus 343 --------~~~~~~~~~~~~~--~~~~l~g~~~~~~~--~~~~~~~~~~~~~~~~ 385 (396)
T PRK09754 343 --------GNPETQKAIWFNL--QNGVLIGAVTLNQG--REIRPIRKWIQSGKTF 385 (396)
T ss_pred --------cCCCCceEEEEEe--eCCEEEEEEEECCH--HHHHHHHHHHHCCCCC
Confidence 0012223444443 57999999999983 3355667788877663
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=324.69 Aligned_cols=348 Identities=22% Similarity=0.339 Sum_probs=251.1
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+++||||||+||+++|..|++. +.+|+||++++..-- ..+..+ +. +. .+.. .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y----~~~~l~-------~~-------~~-~~~~-------~ 56 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEY----NKPDLS-------HV-------FS-QGQR-------A 56 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCc----CcCcCc-------HH-------Hh-CCCC-------H
Confidence 4899999999999999999886 468999998653210 000000 00 00 0000 0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccC
Q 010573 122 PAMMAQKDKAVSNLTR-GIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITID 197 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~ 197 (507)
..+.. ..++++++.+++++.+ .+..+|.+...+.+ ++ ..+.||+||||||++|.. +||...
T Consensus 57 -----------~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~-~~--~~~~yd~LVlATG~~~~~p~i~G~~~- 121 (377)
T PRK04965 57 -----------DDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKS-QG--NQWQYDKLVLATGASAFVPPIPGREL- 121 (377)
T ss_pred -----------HHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEE-CC--eEEeCCEEEECCCCCCCCCCCCCCce-
Confidence 11111 1245667789999876 67778877666664 34 679999999999999853 444321
Q ss_pred CceEecch---hhccc---cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-CCHHHHHHHHHHHHhcCc
Q 010573 198 EKRIVSST---GALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 198 ~~~~~~~~---~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-~d~~~~~~~~~~l~~~Gv 270 (507)
+++.. ++... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus 122 ---v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV 198 (377)
T PRK04965 122 ---MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGV 198 (377)
T ss_pred ---EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCC
Confidence 34333 32221 134789999999999999999999999999999999988764 688899999999999999
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
++++++++++++.+++.+.+++. +++++++|.||+|+|.+|++.+ ++..|++.+. | |.||++|||+.||||
T Consensus 199 ~i~~~~~v~~i~~~~~~~~v~~~-----~g~~i~~D~vI~a~G~~p~~~l--~~~~gl~~~~-g-i~vd~~l~ts~~~Vy 269 (377)
T PRK04965 199 HLLLKSQLQGLEKTDSGIRATLD-----SGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVNR-G-IVVDSYLQTSAPDIY 269 (377)
T ss_pred EEEECCeEEEEEccCCEEEEEEc-----CCcEEECCEEEECcCCCcchHH--HHHCCCCcCC-C-EEECCCcccCCCCEE
Confidence 99999999999877666666664 5578999999999999999875 5667888764 4 999999999999999
Q ss_pred EecCCCCCC----CcHhHHHHHHHHHHHHHcCCCCCCCCCCccE-EEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcc
Q 010573 351 AIGDVIPGP----MLAHKAEEDGVACVEFLAGKHGHVDYDKVPG-VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLAN 425 (507)
Q Consensus 351 A~GD~a~~~----~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~-~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~ 425 (507)
|+|||+..+ ..+..|..||+.||+||+|....+.....+. ..+...++.++|....+ ...+
T Consensus 270 A~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~---------- 335 (377)
T PRK04965 270 ALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQRQ----DLRW---------- 335 (377)
T ss_pred EeeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCCC----CceE----------
Confidence 999999532 2467799999999999999876554444333 33556788898865431 0011
Q ss_pred cchhhcCCcce-EEEEEEECCCCeEEEEEEECCChHHHH
Q 010573 426 SRAKAIDDAEG-IVKILAEKETDKILGVHIMAPNAGELI 463 (507)
Q Consensus 426 ~~~~~~~~~~~-~~k~~~~~~~~~ilG~~~~g~~~~~~~ 463 (507)
.+.++..+ +.|+++ ++|+|+|+.++|+.+.+..
T Consensus 336 ---~~~~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~~~ 369 (377)
T PRK04965 336 ---QINAESQGMVAKGVD--EAGQLRAFVVSEDRMKEAF 369 (377)
T ss_pred ---EEEeCCCCeEEEEEc--cCCcEEEEEEEChhHHHHH
Confidence 01122334 556655 5799999999999765543
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=354.20 Aligned_cols=371 Identities=20% Similarity=0.276 Sum_probs=270.7
Q ss_pred EEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 46 VVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 46 vvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
|||||||+||++||.+|++. +++|+|||+++.++.. .+..+. .+ ......
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~----r~~L~~--------------~l-~g~~~~-------- 53 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYN----RILLSS--------------VL-QGEADL-------- 53 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcc----cccccH--------------HH-CCCCCH--------
Confidence 68999999999999999876 4699999997765321 000000 00 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCccCCc
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEK 199 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~~~~ 199 (507)
+.+.....+++++.+++++.+ .+..+|.....|.+.+| ..+.||+||||||+.|. ++||....+.
T Consensus 54 ----------~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG~~~~~v 121 (785)
T TIGR02374 54 ----------DDITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPGADKKGV 121 (785)
T ss_pred ----------HHccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCCCCCCCE
Confidence 111111245677889999988 57888988888888887 78999999999999985 4556543332
Q ss_pred eE-ecchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCcEEEc
Q 010573 200 RI-VSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 200 ~~-~~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
.. .+.+++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ .+|++..+.+.+.+++.||++++
T Consensus 122 ~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~ 201 (785)
T TIGR02374 122 YVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLL 201 (785)
T ss_pred EEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEe
Confidence 22 2334443332 3478999999999999999999999999999999998876 68999999999999999999999
Q ss_pred CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecC
Q 010573 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354 (507)
Q Consensus 275 ~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD 354 (507)
++.++++..++....+++. +++++++|.||+++|.+|++.+ ++..|++++ |+|.||++|||+.|+|||+||
T Consensus 202 ~~~v~~i~~~~~~~~v~~~-----dG~~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~GD 272 (785)
T TIGR02374 202 EKDTVEIVGATKADRIRFK-----DGSSLEADLIVMAAGIRPNDEL--AVSAGIKVN--RGIIVNDSMQTSDPDIYAVGE 272 (785)
T ss_pred CCceEEEEcCCceEEEEEC-----CCCEEEcCEEEECCCCCcCcHH--HHhcCCccC--CCEEECCCcccCCCCEEEeee
Confidence 9999999765544556664 4568999999999999999985 566778776 679999999999999999999
Q ss_pred CCCCC----CcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEE-EcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccch
Q 010573 355 VIPGP----MLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVV-YTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRA 428 (507)
Q Consensus 355 ~a~~~----~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~-~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (507)
|+..+ .++..|..||+++|.||+|.. .++......+.. +...+++++|....... .....
T Consensus 273 ~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~-----~~~~~--------- 338 (785)
T TIGR02374 273 CAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETER-----TTSIK--------- 338 (785)
T ss_pred cceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCCC-----cEEEE---------
Confidence 99543 367889999999999999876 444333333333 56678899997653211 11111
Q ss_pred hhcC-CcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCc
Q 010573 429 KAID-DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVC 483 (507)
Q Consensus 429 ~~~~-~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~ 483 (507)
+.+ ....|.|++++ +++|+|++++|+.. -...+..++..+..+.+...++
T Consensus 339 -~~d~~~~~y~kl~~~--~~rLlGavlvgd~~--~~~~L~~li~~~~~l~~~~~ll 389 (785)
T TIGR02374 339 -IYDEQKGIYKKLVLS--DDKLLGAVLFGDTS--DYGRLLDMVLKQADISEDPAII 389 (785)
T ss_pred -EEcCCCCEEEEEEEE--CCEEEEEEEECCHH--HHHHHHHHHHcCCCCCcChhhh
Confidence 112 23468999996 57899999999843 3455667777776665443333
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=311.82 Aligned_cols=284 Identities=27% Similarity=0.399 Sum_probs=228.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
++++||||||++|+.+|.+|.+.. .+|+|||+++ .+.+.++..+.....+.......+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~--------------------~hl~~plL~eva~g~l~~~~i~~p 62 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD--------------------YHLFTPLLYEVATGTLSESEIAIP 62 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC--------------------ccccchhhhhhhcCCCChhheecc
Confidence 468999999999999999999974 8999999954 233333333344444433333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC--CCCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV--KSLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p--~~~pg~~~~ 197 (507)
+ ...+... +++++.+++..+|.+..+|.+.++ ..+.||+||+|+|+.+ +.+||....
T Consensus 63 ~------------------~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~~--~~i~YD~LVvalGs~~~~fgi~G~~E~ 122 (405)
T COG1252 63 L------------------RALLRKSGNVQFVQGEVTDIDRDAKKVTLADL--GEISYDYLVVALGSETNYFGIPGAAEY 122 (405)
T ss_pred H------------------HHHhcccCceEEEEEEEEEEcccCCEEEeCCC--ccccccEEEEecCCcCCcCCCCCHHHh
Confidence 3 3455534 599999999999999999998885 7899999999999998 467887655
Q ss_pred CceEecchhhccccC-----------CC-----CeEEEEcCcHHHHHHHHHHHhcC-------------CeeEEEcccCc
Q 010573 198 EKRIVSSTGALALNE-----------VP-----KKLVVIGAGYIGLEMGSVWARLG-------------SEVTVVEFAAD 248 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~-----------~~-----~~vvVvG~G~~g~e~A~~l~~~g-------------~~Vtlv~~~~~ 248 (507)
...+.+.+|+.+++. .. .+++|+|||++|+|+|..|..+- .+|+++++.++
T Consensus 123 a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ 202 (405)
T COG1252 123 AFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR 202 (405)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch
Confidence 666677777654321 12 27999999999999999886541 38999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceE-EEEcCEEEEeecCCCCCCCCCCcc-c
Q 010573 249 IVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTAGLGLDK-I 326 (507)
Q Consensus 249 ~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~-~i~~D~vi~a~G~~p~~~~l~~~~-~ 326 (507)
++|.+++++++..++.|++.||++++++.|++++ ++++.+. ++. +++++.+||++|.+++.- .++ .
T Consensus 203 ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~v~~~-------~g~~~I~~~tvvWaaGv~a~~~---~~~l~ 270 (405)
T COG1252 203 ILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVT--PDGVTLK-------DGEEEIPADTVVWAAGVRASPL---LKDLS 270 (405)
T ss_pred hccCCCHHHHHHHHHHHHHCCCEEEcCCceEEEC--CCcEEEc-------cCCeeEecCEEEEcCCCcCChh---hhhcC
Confidence 9999999999999999999999999999999994 5555554 233 699999999999999876 455 4
Q ss_pred CceecCCCCeecCCCCC-CCCCCeEEecCCCC------CCCcHhHHHHHHHHHHHHHcC
Q 010573 327 GVETDKMGRIPVNERFA-TNIPGVYAIGDVIP------GPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 327 gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~a~------~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+.+.|+.|++.||+++| +++|+|||+|||+. .|+.++.|.+||+.+|+||..
T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred hhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 78889899999999999 68999999999993 367899999999999999974
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=314.81 Aligned_cols=311 Identities=22% Similarity=0.294 Sum_probs=223.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
..++++|||||||+||+.+|.+|.+.+++|+|||+++.+ .+..+..+..... .
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~--------------------~~~~~l~~~~~g~-------~ 59 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM--------------------LFTPLLPQTTTGT-------L 59 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc--------------------chhhhHHHhcccC-------C
Confidence 345579999999999999999998778999999995432 1111111111111 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEc----------cCCceEEEEeCeEEEccCCCCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDT----------IEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~----------~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
+.. .+...+...++..+++++.+++..+|.+...|.+ .++ .++.||+||||||+.|.
T Consensus 60 ~~~-----------~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g--~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 60 EFR-----------SICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNT--FSVPYDKLVVAHGARPN 126 (424)
T ss_pred ChH-----------HhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCc--eEecCCEEEECCCcccC
Confidence 111 1111233456667899999999999877766655 233 68999999999999984
Q ss_pred --CCCCCccCCceEecchhhcccc--------------------CCCCeEEEEcCcHHHHHHHHHHHh------------
Q 010573 190 --SLPGITIDEKRIVSSTGALALN--------------------EVPKKLVVIGAGYIGLEMGSVWAR------------ 235 (507)
Q Consensus 190 --~~pg~~~~~~~~~~~~~~~~~~--------------------~~~~~vvVvG~G~~g~e~A~~l~~------------ 235 (507)
.+||.......+.+..++..+. ...++++|||+|++|+|+|..+..
T Consensus 127 ~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~ 206 (424)
T PTZ00318 127 TFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPE 206 (424)
T ss_pred CCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4566542111222222222110 112489999999999999999875
Q ss_pred --cCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 236 --LGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 236 --~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
.+.+|+++++.+++++.+++++.+.+++.|++.||+++++++|+++.. +. +.++ +++++++|.+|+++|
T Consensus 207 ~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~~--v~~~-----~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 207 LVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--KE--VVLK-----DGEVIPTGLVVWSTG 277 (424)
T ss_pred ccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--CE--EEEC-----CCCEEEccEEEEccC
Confidence 378999999999999999999999999999999999999999999953 33 3443 456899999999999
Q ss_pred CCCCCCCCCCcccCceecCCCCeecCCCCC-CCCCCeEEecCCCCC-----CCcHhHHHHHHHHHHHHHcCCCCCCCCCC
Q 010573 314 RTPFTAGLGLDKIGVETDKMGRIPVNERFA-TNIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLAGKHGHVDYDK 387 (507)
Q Consensus 314 ~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~a~~-----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 387 (507)
.+|+. + ++.++++++++|+|.||+++| |++|||||+|||+.. |..+..|.+||+.+|+||.......+ ..
T Consensus 278 ~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~-~~ 353 (424)
T PTZ00318 278 VGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKP-MS 353 (424)
T ss_pred CCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCC-CC
Confidence 99984 3 567788888889999999999 699999999999963 56889999999999999974321101 12
Q ss_pred ccEEEEcCCCeeeecC
Q 010573 388 VPGVVYTHPEVASVGK 403 (507)
Q Consensus 388 ~p~~~~~~~~~~~vG~ 403 (507)
.|+.....+.+.++|.
T Consensus 354 ~~~~~~~~g~~~~lG~ 369 (424)
T PTZ00318 354 KPFVYRSLGSLAYLGN 369 (424)
T ss_pred CCCeecCCceEEEecC
Confidence 3333333345556654
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=292.95 Aligned_cols=290 Identities=26% Similarity=0.321 Sum_probs=211.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
|||+|||||+||++||..|++.|++|+|||+++ .||.+.....+.. + .++.. ....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~----------------~--~~~~~---~~~~-- 56 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVEN----------------Y--PGFPE---GISG-- 56 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccc----------------c--CCCCC---CCCh--
Confidence 699999999999999999999999999999865 7776653221100 0 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCC--EEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCcc-CC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITI-DE 198 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~--~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~-~~ 198 (507)
..+...+.+.+++.+++++...+..++.. .+.+.+.++ ..+.||+||+|||+.|. .+|+... ..
T Consensus 57 ---------~~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g~~~~~~ 125 (300)
T TIGR01292 57 ---------PELMEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKLGIPGEDEFLG 125 (300)
T ss_pred ---------HHHHHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccCCCCChhhcCC
Confidence 11223344566777899888767666543 456666665 68999999999999874 3455331 11
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc-CcEEEcCce
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ-KMKFMLKTK 277 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~-Gv~i~~~~~ 277 (507)
..+............+++++|||+|.+|+|+|..+.+.+.+|+++++.+.+. .+ ..+.+.+++. ||+++++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~--~~----~~~~~~l~~~~gv~~~~~~~ 199 (300)
T TIGR01292 126 RGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR--AE----KILLDRLRKNPNIEFLWNST 199 (300)
T ss_pred ccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC--cC----HHHHHHHHhCCCeEEEeccE
Confidence 2222222111122347899999999999999999999999999999887543 12 3345566676 999999999
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 278 v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
+++++.++....+++.+..++++.++++|.+++|+|++|+.++ ++.. +.++++|++.||++++|++|||||+|||++
T Consensus 200 v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~--l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~ 276 (300)
T TIGR01292 200 VKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRD 276 (300)
T ss_pred EEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHH--HHHh-heecCCCcEEECCCCccCCCCEEEeecccC
Confidence 9999865533345554434456678999999999999999976 3444 677888999999999999999999999998
Q ss_pred -CCCcHhHHHHHHHHHHHHHc
Q 010573 358 -GPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 358 -~~~~~~~A~~~g~~aa~~i~ 377 (507)
.+..+..|+.||+.||.+|.
T Consensus 277 ~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 277 KGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred cchhhhhhhhhhHHHHHHHHH
Confidence 57789999999999999986
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=306.51 Aligned_cols=292 Identities=29% Similarity=0.392 Sum_probs=214.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...|||+||||||||++||..|++.|++|+||++ .+||++.....++. + .+.. ...
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~~~~~~~----------------~--~~~~----~~~ 265 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKDTVGIEN----------------L--ISVP----YTT 265 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccccCcCccc----------------c--cccC----CCC
Confidence 4569999999999999999999999999999975 58887653211100 0 0000 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT 195 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~ 195 (507)
+. .+...+.+.+++.+++++.+ .+..++ .+.+.+.+.+| ..+.||++|+|||+.|. .+||..
T Consensus 266 ~~-----------~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~~~ipG~~ 332 (515)
T TIGR03140 266 GS-----------QLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRKLGVPGEK 332 (515)
T ss_pred HH-----------HHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCCCCCCCHH
Confidence 11 12233445566678998876 455443 34566776666 57999999999999874 345432
Q ss_pred -cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh-cCcEEE
Q 010573 196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFM 273 (507)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~i~ 273 (507)
.....++...........+++++|||+|++|+|+|..|++.+.+|+++++.+.+.. ...+.+.+++ .||+++
T Consensus 333 ~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~~gV~i~ 406 (515)
T TIGR03140 333 EYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSLPNVDIL 406 (515)
T ss_pred HcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcCCCCEEE
Confidence 11223333222222223579999999999999999999999999999998876532 2345666765 699999
Q ss_pred cCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEe
Q 010573 274 LKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (507)
Q Consensus 274 ~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~ 352 (507)
+++.+++++.+++.+. +++.+..+++.+++++|.|++++|++|+++++ +.. ++++++|+|.||+++||++|+|||+
T Consensus 407 ~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l--~~~-~~~~~~G~I~vd~~~~Ts~p~IyAa 483 (515)
T TIGR03140 407 TSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERGRTSVPGIFAA 483 (515)
T ss_pred ECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH--hhh-cccCCCCeEEECCCCCCCCCCEEEc
Confidence 9999999987655554 66655444555789999999999999999874 444 7788889999999999999999999
Q ss_pred cCCCCCC-CcHhHHHHHHHHHHHHHcC
Q 010573 353 GDVIPGP-MLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 353 GD~a~~~-~~~~~A~~~g~~aa~~i~~ 378 (507)
|||++.+ ..+..|+.+|..||.++..
T Consensus 484 GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 484 GDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred ccccCCccceEEEEEccHHHHHHHHHH
Confidence 9999765 4677899999999998864
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=305.58 Aligned_cols=292 Identities=25% Similarity=0.308 Sum_probs=205.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...|||+||||||||++||..|++.|++|+|||+ ..+||+|....++... .+.. ...
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~~~~~i~~~------------------pg~~----~~~ 58 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQITITSEVVNY------------------PGIL----NTT 58 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEEeccccccC------------------CCCc----CCC
Confidence 3469999999999999999999999999999999 5789987654332110 0000 001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCC--EEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCc-
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT- 195 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~--~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~- 195 (507)
. ..+...+....+..+++++.+.+..++.. ...+.+.++ .+.+++||||||++|. .+||..
T Consensus 59 ~-----------~~l~~~l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~g---~~~a~~lVlATGa~p~~~~ipG~~~ 124 (555)
T TIGR03143 59 G-----------PELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARG---DYKTLAVLIATGASPRKLGFPGEEE 124 (555)
T ss_pred H-----------HHHHHHHHHHHHHcCCEEeccEEEEEEecCCEEEEEecCC---EEEEeEEEECCCCccCCCCCCCHHH
Confidence 1 11223334455667888887777666543 345555444 4789999999999985 345532
Q ss_pred cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
.....++.+..+......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ++... .+.++..||+++++
T Consensus 125 ~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~~---~~~~~~~gV~i~~~ 199 (555)
T TIGR03143 125 FTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLIA---EKVKNHPKIEVKFN 199 (555)
T ss_pred hCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHHH---HHHHhCCCcEEEeC
Confidence 12223333222222223589999999999999999999999999999999876522 22222 33345579999999
Q ss_pred ceEEEEEEcCCeEEEEEeecCCCceEEE--EcCE----EEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCe
Q 010573 276 TKVVGVDLSGDGVKLTLEPAAGGEKTIL--EADV----VLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349 (507)
Q Consensus 276 ~~v~~i~~~~~~v~v~~~~~~~g~~~~i--~~D~----vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~I 349 (507)
+.|+++..++....+.+.+..+|+..++ ++|. |++++|++|++.++ + .+++++++|+|.||++++|++|+|
T Consensus 200 ~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~--~-~~l~l~~~G~I~vd~~~~Ts~p~I 276 (555)
T TIGR03143 200 TELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELF--K-GVVELDKRGYIPTNEDMETNVPGV 276 (555)
T ss_pred CEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHH--h-hhcccCCCCeEEeCCccccCCCCE
Confidence 9999997544322344433333443443 3776 99999999999863 3 357888889999999999999999
Q ss_pred EEecCCCC-CCCcHhHHHHHHHHHHHHHc
Q 010573 350 YAIGDVIP-GPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 350 yA~GD~a~-~~~~~~~A~~~g~~aa~~i~ 377 (507)
||+|||+. .+..+..|+.||+.||.+|.
T Consensus 277 yAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 277 YAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred EEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 99999985 34467789999999999984
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=287.24 Aligned_cols=297 Identities=20% Similarity=0.244 Sum_probs=210.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
....+||+||||||||++||..|+++|+++++||+ ...||.|.....+. .++......
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~~~~~---------------------~~~~~~~~~ 60 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVE---------------------NWPGDPNDL 60 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecCceEC---------------------CCCCCCCCC
Confidence 34568999999999999999999999999999996 56788765432110 000000112
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~ 195 (507)
+...+ ...+.......++++..+.+..++ ...+.+...+ ..+.||+||+|||+.|.. +|+..
T Consensus 61 ~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~v~~~~---~~~~~d~vilAtG~~~~~~~i~g~~ 126 (321)
T PRK10262 61 TGPLL-----------MERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDS---GEYTCDALIIATGASARYLGLPSEE 126 (321)
T ss_pred CHHHH-----------HHHHHHHHHHCCCEEEeeEEEEEEecCCeEEEEecC---CEEEECEEEECCCCCCCCCCCCCHH
Confidence 22222 222234444556666666544443 3344454332 368999999999999853 45432
Q ss_pred -cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 010573 196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
.....+............+++++|||+|.+|+|+|..|++.+++|+++++.+.+. .++.+.+.+.+.+++.||++++
T Consensus 127 ~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~ 204 (321)
T PRK10262 127 AFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHT 204 (321)
T ss_pred HcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEe
Confidence 1222333333333333458999999999999999999999999999999987652 3567788889999999999999
Q ss_pred CceEEEEEEcCCeE-EEEEeecC-CCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCC-----CCCCCCC
Q 010573 275 KTKVVGVDLSGDGV-KLTLEPAA-GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE-----RFATNIP 347 (507)
Q Consensus 275 ~~~v~~i~~~~~~v-~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~-----~~~t~~~ 347 (507)
++.+++++.++.++ .+++.+.. +++.+++++|.|++++|++|+..++ + .++.++ +|+|.||+ +++|++|
T Consensus 205 ~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~--~-~~l~~~-~g~i~vd~~~~~~~~~t~~~ 280 (321)
T PRK10262 205 NRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIP 280 (321)
T ss_pred CCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh--h-cccccc-CCEEEECCCCcccccccCCC
Confidence 99999997665433 35554322 2234689999999999999999853 2 245554 58899997 7899999
Q ss_pred CeEEecCCCCC-CCcHhHHHHHHHHHHHHHcC
Q 010573 348 GVYAIGDVIPG-PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 348 ~IyA~GD~a~~-~~~~~~A~~~g~~aa~~i~~ 378 (507)
||||+|||++. +.....|+.+|..||..|..
T Consensus 281 ~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 281 GVFAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred CEEECeeccCCCcceEEEEehhHHHHHHHHHH
Confidence 99999999964 45667799999999988753
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=294.39 Aligned_cols=373 Identities=23% Similarity=0.262 Sum_probs=274.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
..+++|||.|+||..+..++.+. -++|+++-.++.....-... + +.+.. ..
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~L---------s---------~vl~~--------~~ 56 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILL---------S---------SVLAG--------EK 56 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceee---------c---------cccCC--------Cc
Confidence 35899999999999999999884 47899998765442211000 0 00000 00
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE 198 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~ 198 (507)
+ .+++.-.-.+|+++++|+++.+ .+.++|+....|.++.| ..+.||+||+||||.|+.+|....+.
T Consensus 57 ~-----------~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~PiPG~~~ 123 (793)
T COG1251 57 T-----------AEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILPIPGSDL 123 (793)
T ss_pred c-----------HHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCC--cEeecceeEEecCccccccCCCCCCC
Confidence 1 2233333468999999999998 58999999999999998 89999999999999997665444333
Q ss_pred ceEe---cchhhccc---cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-CCCCHHHHHHHHHHHHhcCcE
Q 010573 199 KRIV---SSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 199 ~~~~---~~~~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
..++ +.+|...+ ....++.+|||+|..|+|+|..|.+.|.++++++..+.++ .++|+.....+++.+++.|++
T Consensus 124 ~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~ 203 (793)
T COG1251 124 PGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIK 203 (793)
T ss_pred CCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcce
Confidence 3344 44444322 2335668999999999999999999999999999999885 489999999999999999999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
++++...+++.+.+....+.+. +++.+++|.|++|+|.+||+.+ ...+|+..++ +|.||++||||+|+|||
T Consensus 204 ~~l~~~t~ei~g~~~~~~vr~~-----DG~~i~ad~VV~a~GIrPn~el--a~~aGlavnr--GIvvnd~mqTsdpdIYA 274 (793)
T COG1251 204 VLLEKNTEEIVGEDKVEGVRFA-----DGTEIPADLVVMAVGIRPNDEL--AKEAGLAVNR--GIVVNDYMQTSDPDIYA 274 (793)
T ss_pred eecccchhhhhcCcceeeEeec-----CCCcccceeEEEecccccccHh--HHhcCcCcCC--CeeecccccccCCCeee
Confidence 9999999888775555567776 7789999999999999999996 6788999987 79999999999999999
Q ss_pred ecCCCC----CCCcHhHHHHHHHHHHHHHcCCCCCCCCCC-ccEEE--EcCCCeeeecCCHHHHHHcCCCEEEEEEecCc
Q 010573 352 IGDVIP----GPMLAHKAEEDGVACVEFLAGKHGHVDYDK-VPGVV--YTHPEVASVGKTEEQVKELGVEYRVGKFPFLA 424 (507)
Q Consensus 352 ~GD~a~----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~-~p~~~--~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~ 424 (507)
+|+|+. .+.+...+..|++.+|+++++.... .|.. .++.. .+.-++.+.|.-. + ..+-+..
T Consensus 275 vGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~-~y~gsv~stkLKv~Gvdl~S~GD~~-e--~~~~~~i-------- 342 (793)
T COG1251 275 VGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAE-AYEGSVTSTKLKVSGVDVFSAGDFQ-E--TEGAESI-------- 342 (793)
T ss_pred hhhHHHhcCccceehhHHHHHHHHHHHHhccCccc-ccccccchhhhcccccceeeccchh-h--cCCCceE--------
Confidence 999994 3568889999999999999987543 1211 11111 1122344444222 1 1111111
Q ss_pred ccchhhcCCc-ceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCc
Q 010573 425 NSRAKAIDDA-EGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVC 483 (507)
Q Consensus 425 ~~~~~~~~~~-~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~ 483 (507)
.+.+.. ..|.|+++ ++++|+|+.++|+-+. =+.+-.+|..+.+++++.+..
T Consensus 343 ----v~~D~~~~iYKrlvL--~dd~IvgavL~GDt~d--~~~l~~li~~~~~~se~r~~l 394 (793)
T COG1251 343 ----VFRDEQRGIYKKLVL--KDDKIVGAVLYGDTSD--GGWLLDLILKGADISEIRDTL 394 (793)
T ss_pred ----EEecccccceeEEEE--eCCeEEEEEEEeeccc--chHHHHHHhcCCCccccchhh
Confidence 112333 34777877 5679999999999432 234667888899988887653
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=299.83 Aligned_cols=292 Identities=31% Similarity=0.437 Sum_probs=216.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...|||+||||||||++||.+|++.|++|+||++ .+||+|.....++. + .++. ...
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~~~~~----------------~--~~~~----~~~ 264 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTMGIEN----------------F--ISVP----ETE 264 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccCcccc----------------c--CCCC----CCC
Confidence 4569999999999999999999999999999986 48998753211110 0 0000 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC--CEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT 195 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~--~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~ 195 (507)
+. ++...+...+++.++++..+ .+..++. +.+.+.+.++ ..+.||+||+|||++|+ .+|+..
T Consensus 265 ~~-----------~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~ipG~~ 331 (517)
T PRK15317 265 GP-----------KLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMNVPGED 331 (517)
T ss_pred HH-----------HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCCCCCHH
Confidence 22 23344456677778988866 4555544 3566776666 57999999999999875 345532
Q ss_pred -cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh-cCcEEE
Q 010573 196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFM 273 (507)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~i~ 273 (507)
.....++...........+++++|||+|.+|+|+|..|+..+.+|+++++.+.+.. + ..+.+.+.+ .||+++
T Consensus 332 ~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gI~i~ 405 (517)
T PRK15317 332 EYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA--D----QVLQDKLRSLPNVTII 405 (517)
T ss_pred HhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc--c----HHHHHHHhcCCCcEEE
Confidence 22333333322222233579999999999999999999999999999998876532 2 334555655 699999
Q ss_pred cCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEe
Q 010573 274 LKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (507)
Q Consensus 274 ~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~ 352 (507)
+++.+++++.+++.+. +++.+..+++.+++++|.+++++|++|+++++ +.. ++++++|+|.||+++||++||||||
T Consensus 406 ~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l--~~~-v~~~~~g~i~vd~~l~Ts~p~IyAa 482 (517)
T PRK15317 406 TNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL--KGT-VELNRRGEIIVDARGATSVPGVFAA 482 (517)
T ss_pred ECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHH--hhh-eeeCCCCcEEECcCCCCCCCCEEEC
Confidence 9999999987655543 66655445555689999999999999999874 444 7788889999999999999999999
Q ss_pred cCCCCCC-CcHhHHHHHHHHHHHHHcC
Q 010573 353 GDVIPGP-MLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 353 GD~a~~~-~~~~~A~~~g~~aa~~i~~ 378 (507)
|||+..+ .....|+.+|..||.++..
T Consensus 483 GDv~~~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 483 GDCTTVPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred ccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence 9999754 5788899999999988864
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=274.64 Aligned_cols=288 Identities=28% Similarity=0.356 Sum_probs=214.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCc-EEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhC-CcccCcccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH-GVKFSSVEV 119 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 119 (507)
..|||+||||||||++||.+++|.+.+ ++|+|+ ...||+......+ ..+ |+.. ..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~-~~~gg~~~~~~~v-------------------enypg~~~---~~ 58 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG-GEPGGQLTKTTDV-------------------ENYPGFPG---GI 58 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec-CCcCCccccceee-------------------cCCCCCcc---CC
Confidence 458999999999999999999999999 555555 6677653322111 111 1110 11
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCC--EEEEEccCCceEEEEeCeEEEccCCCCC--CCCCC-
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGI- 194 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~--~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~- 194 (507)
.. ..+...+.++.+..++++....+..++.. .+.|.+.++ . +.+++||||||..++ .+|+.
T Consensus 59 ~g-----------~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~--~-~~ak~vIiAtG~~~~~~~~~~e~ 124 (305)
T COG0492 59 LG-----------PELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKG--T-YEAKAVIIATGAGARKLGVPGEE 124 (305)
T ss_pred ch-----------HHHHHHHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCC--e-EEEeEEEECcCCcccCCCCCcch
Confidence 11 22334445666678899888777666554 677888877 4 999999999998874 34432
Q ss_pred ccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc-CcEEE
Q 010573 195 TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ-KMKFM 273 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~-Gv~i~ 273 (507)
+..+..+..+..+.. ...+++++|||+|.+++|.|..|.+.+++||+++|++.+.+ . +.+.+.+++. +|+++
T Consensus 125 e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~----~~~~~~l~~~~~i~~~ 197 (305)
T COG0492 125 EFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--E----EILVERLKKNVKIEVL 197 (305)
T ss_pred hhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc--C----HHHHHHHHhcCCeEEE
Confidence 244455665555555 55678999999999999999999999999999999987654 3 3344445544 89999
Q ss_pred cCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEec
Q 010573 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353 (507)
Q Consensus 274 ~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~G 353 (507)
+++.+.++.+++ .-.+.+++.. +....+.+|-+++++|..|++.+ +...+. ++++|+|+||+.++||+|||||||
T Consensus 198 ~~~~i~ei~G~~-v~~v~l~~~~-~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~TsvpGifAaG 272 (305)
T COG0492 198 TNTVVKEILGDD-VEGVVLKNVK-GEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETSVPGIFAAG 272 (305)
T ss_pred eCCceeEEecCc-cceEEEEecC-CceEEEEeceEEEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcccCCCCEEEeE
Confidence 999999998766 2245555433 45678999999999999999986 455555 788999999999999999999999
Q ss_pred CCCCCCC-cHhHHHHHHHHHHHHHcC
Q 010573 354 DVIPGPM-LAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 354 D~a~~~~-~~~~A~~~g~~aa~~i~~ 378 (507)
|++..+. +...|..+|-.||.++..
T Consensus 273 Dv~~~~~rqi~ta~~~G~~Aa~~a~~ 298 (305)
T COG0492 273 DVADKNGRQIATAAGDGAIAALSAER 298 (305)
T ss_pred eeccCcccEEeehhhhHHHHHHHHHH
Confidence 9997654 688899999999988753
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=297.09 Aligned_cols=280 Identities=26% Similarity=0.301 Sum_probs=205.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...++|+||||||||++||..|++.|++|+|||+++.+||.+.+ + +|... .+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~-g-ip~~~--------------------------~~ 182 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY-G-IPEFR--------------------------LP 182 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee-c-CCCcc--------------------------CC
Confidence 45689999999999999999999999999999998889987532 1 22100 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCC-CCC--CCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVK--SLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~-~p~--~~pg~~~~ 197 (507)
. .+.....+.+++.+++++.+.... ..+.+.+. ...||+||||||+ .|. .+||.+
T Consensus 183 -~-----------~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~~~---~~~yd~viiAtGa~~p~~~~ipG~~-- 240 (449)
T TIGR01316 183 -K-----------EIVVTEIKTLKKLGVTFRMNFLVG-----KTATLEEL---FSQYDAVFIGTGAGLPKLMNIPGEE-- 240 (449)
T ss_pred -H-----------HHHHHHHHHHHhCCcEEEeCCccC-----CcCCHHHH---HhhCCEEEEeCCCCCCCcCCCCCCC--
Confidence 0 011111234566789988876321 12333322 2469999999998 564 345543
Q ss_pred CceEecchhhccc---------------cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCCCCHHHHHHH
Q 010573 198 EKRIVSSTGALAL---------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQF 261 (507)
Q Consensus 198 ~~~~~~~~~~~~~---------------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~d~~~~~~~ 261 (507)
...+++..+++.. ...+++++|||+|.+|+|+|..+.++|.+||++++.++. ++.. ...
T Consensus 241 ~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~-----~~~ 315 (449)
T TIGR01316 241 LCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR-----VEE 315 (449)
T ss_pred CCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC-----HHH
Confidence 3345555544311 124689999999999999999999999999999987653 2221 222
Q ss_pred HHHHHhcCcEEEcCceEEEEEEcC-CeE-EEEEeec------C---------CCceEEEEcCEEEEeecCCCCCCCCCCc
Q 010573 262 QRSLEKQKMKFMLKTKVVGVDLSG-DGV-KLTLEPA------A---------GGEKTILEADVVLVSAGRTPFTAGLGLD 324 (507)
Q Consensus 262 ~~~l~~~Gv~i~~~~~v~~i~~~~-~~v-~v~~~~~------~---------~g~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (507)
.+.+++.||++++++.++++..++ +.+ .+++... . .++..++++|.||+|+|..|++.+ ++
T Consensus 316 ~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~--l~ 393 (449)
T TIGR01316 316 IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIM--AE 393 (449)
T ss_pred HHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchh--hh
Confidence 355778999999999999997643 334 2444310 1 123457999999999999999875 56
Q ss_pred ccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 325 ~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
..+++++++|+|.||++++|++|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 394 ~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 394 TTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred ccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77899988899999999999999999999999888899999999999999985
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=296.20 Aligned_cols=285 Identities=25% Similarity=0.282 Sum_probs=205.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
....+||+||||||||++||..|++.|++|+|+|+.+.+||.+.+ .+|...+
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~~l-------------------------- 188 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY--GIPEFRL-------------------------- 188 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee--cCCCccC--------------------------
Confidence 345689999999999999999999999999999998889997642 1221100
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCC-CCC--CCCCCcc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVK--SLPGITI 196 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~-~p~--~~pg~~~ 196 (507)
+.. .+.....+++++.+++++.+.... . .+...+. ...+.||+||||||+ .|+ .+||.+
T Consensus 189 ~~~-----------~~~~~~~~~~~~~gv~i~~~~~v~---~--~v~~~~~-~~~~~~d~viiAtGa~~~~~l~ipG~~- 250 (464)
T PRK12831 189 PKE-----------TVVKKEIENIKKLGVKIETNVVVG---K--TVTIDEL-LEEEGFDAVFIGSGAGLPKFMGIPGEN- 250 (464)
T ss_pred Ccc-----------HHHHHHHHHHHHcCCEEEcCCEEC---C--cCCHHHH-HhccCCCEEEEeCCCCCCCCCCCCCcC-
Confidence 000 011112345667789988776331 1 1222221 123569999999998 464 345543
Q ss_pred CCceEecchhhccc--------------cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCCCCHHHHHHH
Q 010573 197 DEKRIVSSTGALAL--------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQF 261 (507)
Q Consensus 197 ~~~~~~~~~~~~~~--------------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~d~~~~~~~ 261 (507)
...+++..+++.. ...+++|+|||+|.+|+|+|..+.++|.+|+++.+.+.. ++....+ +
T Consensus 251 -~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e----~ 325 (464)
T PRK12831 251 -LNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE----V 325 (464)
T ss_pred -CcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHH----H
Confidence 3456666655422 135799999999999999999999999999999987642 3332222 1
Q ss_pred HHHHHhcCcEEEcCceEEEEEEcCC-eEE-EEEeec------C---------CCceEEEEcCEEEEeecCCCCCCCCCCc
Q 010573 262 QRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEPA------A---------GGEKTILEADVVLVSAGRTPFTAGLGLD 324 (507)
Q Consensus 262 ~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~-v~~~~~------~---------~g~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (507)
+.+++.||++++++.++++..+++ .+. +.+... . +++..++++|.||+|+|..|++.+ ++
T Consensus 326 -~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~--~~ 402 (464)
T PRK12831 326 -HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLI--SS 402 (464)
T ss_pred -HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhh--hc
Confidence 235678999999999999976433 332 333210 0 233457999999999999999875 34
Q ss_pred c-cCceecCCCCeecCCC-CCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 325 K-IGVETDKMGRIPVNER-FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 325 ~-~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
. .|++++++|.|.||++ ++||.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 403 ~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 403 TTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred ccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3 6888888899999998 9999999999999999888899999999999999853
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=287.38 Aligned_cols=281 Identities=21% Similarity=0.272 Sum_probs=208.5
Q ss_pred cEEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 45 DVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+|||||||+||+.+|.+|+++ +.+|+|||+++..- +..+.|. +...... .
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~----~~~~~~~----------------~~~g~~~-------~ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP----YSGMLPG----------------MIAGHYS-------L 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc----ccchhhH----------------HHheeCC-------H
Confidence 589999999999999999754 68999999965321 0001110 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCccCCc
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEK 199 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~~~~ 199 (507)
+++.....+++++.+++++.+.+..+|.+...|.+.+| +++.||+||||||+.|. .+||......
T Consensus 54 -----------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g~~~~~~ 120 (364)
T TIGR03169 54 -----------DEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEGAADLAV 120 (364)
T ss_pred -----------HHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCccccccc
Confidence 11222234566778999999999999988888888887 67999999999999984 4555321111
Q ss_pred eEecchhhcc--------c--cCCCCeEEEEcCcHHHHHHHHHHHh----cC--CeeEEEcccCccCCCCCHHHHHHHHH
Q 010573 200 RIVSSTGALA--------L--NEVPKKLVVIGAGYIGLEMGSVWAR----LG--SEVTVVEFAADIVPSMDGEIRKQFQR 263 (507)
Q Consensus 200 ~~~~~~~~~~--------~--~~~~~~vvVvG~G~~g~e~A~~l~~----~g--~~Vtlv~~~~~~~~~~d~~~~~~~~~ 263 (507)
.+.+.+++.. . ...+++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++.+++++...+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~ 199 (364)
T TIGR03169 121 PVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLR 199 (364)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHH
Confidence 1222222211 1 1235799999999999999999875 34 589999 6677788889999999999
Q ss_pred HHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCC
Q 010573 264 SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343 (507)
Q Consensus 264 ~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~ 343 (507)
.+++.||++++++.+++++. + .+.+. +++++++|.+++|+|.+|+.. +...++.++++|+|.||+++|
T Consensus 200 ~l~~~gV~v~~~~~v~~i~~--~--~v~~~-----~g~~i~~D~vi~a~G~~p~~~---l~~~gl~~~~~g~i~vd~~l~ 267 (364)
T TIGR03169 200 LLARRGIEVHEGAPVTRGPD--G--ALILA-----DGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTLQ 267 (364)
T ss_pred HHHHCCCEEEeCCeeEEEcC--C--eEEeC-----CCCEEecCEEEEccCCChhhH---HHHcCCCcCCCCeEEECCccc
Confidence 99999999999999998853 3 34443 456899999999999999864 455678888889999999999
Q ss_pred C-CCCCeEEecCCCCC-----CCcHhHHHHHHHHHHHHHcC
Q 010573 344 T-NIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 344 t-~~~~IyA~GD~a~~-----~~~~~~A~~~g~~aa~~i~~ 378 (507)
| +.|+|||+|||+.. +..+..|.+||+.+|+||..
T Consensus 268 ~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 268 SLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred cCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 7 99999999999943 34678899999999999963
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=301.84 Aligned_cols=283 Identities=24% Similarity=0.308 Sum_probs=205.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.+..+|+||||||||++||..|++.|++|+|+|+.+.+||.+.+ .+|...+..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~--~IP~~Rlp~------------------------- 589 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN--IIPQFRIPA------------------------- 589 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee--ecccccccH-------------------------
Confidence 35679999999999999999999999999999999899997643 234321100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCce
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~ 200 (507)
. +.....+++.+.++++..+.... +..++. ....||+||||||++++..+++......
T Consensus 590 --e-----------vL~~die~l~~~GVe~~~gt~Vd-------i~le~L--~~~gYDaVILATGA~~~~~l~IpG~~~g 647 (1019)
T PRK09853 590 --E-----------LIQHDIEFVKAHGVKFEFGCSPD-------LTVEQL--KNEGYDYVVVAIGADKNGGLKLEGGNQN 647 (1019)
T ss_pred --H-----------HHHHHHHHHHHcCCEEEeCceeE-------EEhhhh--eeccCCEEEECcCCCCCCCCCCCCccCC
Confidence 0 00111245566789988875431 222222 4556999999999986432222211234
Q ss_pred Eecchhhccc-------cCCCCeEEEEcCcHHHHHHHHHHHhc-C-CeeEEEcccCc-cCCCCCHHHHHHHHHHHHhcCc
Q 010573 201 IVSSTGALAL-------NEVPKKLVVIGAGYIGLEMGSVWARL-G-SEVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 201 ~~~~~~~~~~-------~~~~~~vvVvG~G~~g~e~A~~l~~~-g-~~Vtlv~~~~~-~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
+++..+++.. ...+++|+|||+|.+|+|+|..+.+. | .+|+++.|++. .++..++++. +.+ +.||
T Consensus 648 V~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle----~Al-eeGV 722 (1019)
T PRK09853 648 VIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYE----EAL-EDGV 722 (1019)
T ss_pred ceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHH----HHH-HcCC
Confidence 5554443321 23589999999999999999999888 4 48999998763 4665554443 333 4699
Q ss_pred EEEcCceEEEEEEcCCeEEEEE---e---------ecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeec
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTL---E---------PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~---~---------~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~V 338 (507)
++++.+.+.++.. ++.+.+.. . ....+++.++++|.||+|+|..|++++ ++..|++++++|++.|
T Consensus 723 e~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~ld~~G~I~V 799 (1019)
T PRK09853 723 EFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPLDKKGWPVV 799 (1019)
T ss_pred EEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH--HHhcCccccCCCCEEe
Confidence 9999999998864 33333211 0 011235678999999999999999987 5677888888899999
Q ss_pred CCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 339 NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 339 d~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
|++++|+.|+|||+|||+.+|..+..|+.+|+.||.+|++..
T Consensus 800 DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 800 DANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred CCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999888899999999999999998643
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=268.00 Aligned_cols=367 Identities=24% Similarity=0.333 Sum_probs=261.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...++|||+|++|..|+.++++.+. +++|+-++..+ |...
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----------pydr---------------------------- 115 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----------PYDR---------------------------- 115 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----------cccc----------------------------
Confidence 5689999999999999999999974 68888653221 1110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~~ 197 (507)
.++..........+.....+++++.+|+++.+. ++.+|-...++.+.+| +.+.|++++||||+.|. ++||..
T Consensus 116 -~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~pG~~-- 190 (478)
T KOG1336|consen 116 -ARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIPGVE-- 190 (478)
T ss_pred -hhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEeecCccccCCCCCcc--
Confidence 000000000111222233568999999999884 7888999999999888 89999999999999774 556655
Q ss_pred CceEecchhhccc------cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCc
Q 010573 198 EKRIVSSTGALAL------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 198 ~~~~~~~~~~~~~------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv 270 (507)
...+.+..+..+. ......++++|+|++|+|+|..+...+.+||++++.+.+++ .+.+.+.+.+++.++++||
T Consensus 191 ~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgV 270 (478)
T KOG1336|consen 191 LKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGV 270 (478)
T ss_pred ccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCe
Confidence 4445544433322 13377899999999999999999999999999999999887 7789999999999999999
Q ss_pred EEEcCceEEEEEEcCCe--EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCC
Q 010573 271 KFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~--v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~ 348 (507)
++++++.+.+++.+.++ +.|.+. +++++++|+|++++|.+|++.++ +. +..+++.|+|.||+.+||++||
T Consensus 271 k~~~~t~~s~l~~~~~Gev~~V~l~-----dg~~l~adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~t~~~~ 342 (478)
T KOG1336|consen 271 KFYLGTVVSSLEGNSDGEVSEVKLK-----DGKTLEADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQTSVPN 342 (478)
T ss_pred EEEEecceeecccCCCCcEEEEEec-----cCCEeccCeEEEeeccccccccc--cc-cceecccCCEeehhceeeccCC
Confidence 99999999999876633 345555 67899999999999999999984 44 7888999999999999999999
Q ss_pred eEEecCCCCCCC----------cHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEE
Q 010573 349 VYAIGDVIPGPM----------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVG 418 (507)
Q Consensus 349 IyA~GD~a~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 418 (507)
|||+||++..|. .+..|..+|+.|+..+...... .++.+|.+.-...+.+ .+..|..+ +
T Consensus 343 VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~-~~~~lPyf~t~~f~~~--------~~~~G~g~--~ 411 (478)
T KOG1336|consen 343 VYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQD-AYDYLPYFYTRFFSLS--------WRFAGDGV--G 411 (478)
T ss_pred cccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcc-cccccchHHHHHhhhh--------ccccCcCc--c
Confidence 999999995432 4567888888776666533221 2555664321111111 11111110 0
Q ss_pred EEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhc
Q 010573 419 KFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIAR 481 (507)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 481 (507)
.... ....+...|...++ + +..+|+.+-+- ..+..+.++..++++..+..+..
T Consensus 412 ~~v~------~G~~e~~~f~ay~~--k-~~~v~a~~~~g-~~~~~~~~a~l~~~~~~v~~~~~ 464 (478)
T KOG1336|consen 412 DVVL------FGDLEPGSFGAYWI--K-GDKVGAVAEGG-RDEEVSQFAKLARQGPEVTSLKL 464 (478)
T ss_pred ceee------ecccccccceeeEe--e-ccEEEEEeccC-CChHHHHHHHHHhcCCcchhhhh
Confidence 0000 00112234777777 4 77888765443 45778889999999998877543
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=290.27 Aligned_cols=283 Identities=25% Similarity=0.306 Sum_probs=205.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
....++|+||||||||+++|..|++.|++|+|+|+.+.+||...+ .+|...+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~--gip~~~~-------------------------- 188 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY--GIPEFRL-------------------------- 188 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec--cCCCccC--------------------------
Confidence 345689999999999999999999999999999998888886432 1121100
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CC--CCCCCcc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITI 196 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~--~~pg~~~ 196 (507)
. ..+.....+++++.+++++.+.... . .+.+.+. .+.||+||+|||+. |. .+||..
T Consensus 189 ~------------~~~~~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~~---~~~~d~vvlAtGa~~~~~~~i~G~~- 247 (457)
T PRK11749 189 P------------KDIVDREVERLLKLGVEIRTNTEVG---R--DITLDEL---RAGYDAVFIGTGAGLPRFLGIPGEN- 247 (457)
T ss_pred C------------HHHHHHHHHHHHHcCCEEEeCCEEC---C--ccCHHHH---HhhCCEEEEccCCCCCCCCCCCCcc-
Confidence 0 0111222345666789988776431 1 1222222 26899999999986 43 344443
Q ss_pred CCceEecchhhcccc---------CCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCcc-CCCCCHHHHHHHHHHH
Q 010573 197 DEKRIVSSTGALALN---------EVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRKQFQRSL 265 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~---------~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~d~~~~~~~~~~l 265 (507)
...+++..+++... ..+++|+|||+|.+|+|+|..+.+.|. +|+++++.+.. ++..+. ..+.+
T Consensus 248 -~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~~~~~ 321 (457)
T PRK11749 248 -LGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-----EVEHA 321 (457)
T ss_pred -CCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----HHHHH
Confidence 33455544432211 247999999999999999999999998 89999987653 443322 24567
Q ss_pred HhcCcEEEcCceEEEEEEcCCeE-EEEEeec--------------CCCceEEEEcCEEEEeecCCCCCCCCCCcccCcee
Q 010573 266 EKQKMKFMLKTKVVGVDLSGDGV-KLTLEPA--------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330 (507)
Q Consensus 266 ~~~Gv~i~~~~~v~~i~~~~~~v-~v~~~~~--------------~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~ 330 (507)
++.||++++++.++++..+++++ .+++... .++++.++++|.||+++|.+|+..++ .+..++.+
T Consensus 322 ~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~gl~~ 400 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTPGLEL 400 (457)
T ss_pred HHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-ccccCccC
Confidence 78999999999999998765442 2333211 12355689999999999999997653 34567888
Q ss_pred cCCCCeecCC-CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 331 DKMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 331 ~~~G~i~Vd~-~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+++|+|+||+ +++|+.|+|||+|||+.++.++..|+.||+.||.+|..
T Consensus 401 ~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 401 NRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred CCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 8889999998 78999999999999998878899999999999999863
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=298.57 Aligned_cols=281 Identities=27% Similarity=0.338 Sum_probs=203.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...++|+||||||||++||..|++.|++|+|+|+++.+||.+.+. +|...+..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~--IP~~rlp~------------------------- 587 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI--IPEFRISA------------------------- 587 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec--ccccCCCH-------------------------
Confidence 345899999999999999999999999999999999999986432 33221100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCce
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~ 200 (507)
. ......+++...+|++..+... .. ...+. ....||+||||||+.++..+++......
T Consensus 588 --e-----------~l~~~ie~l~~~GVe~~~g~~~-----d~--~ve~l--~~~gYDaVIIATGA~~~~~l~I~G~~~~ 645 (1012)
T TIGR03315 588 --E-----------SIQKDIELVKFHGVEFKYGCSP-----DL--TVAEL--KNQGYKYVILAIGAWKHGPLRLEGGGER 645 (1012)
T ss_pred --H-----------HHHHHHHHHHhcCcEEEEeccc-----ce--Ehhhh--hcccccEEEECCCCCCCCCCCcCCCCcc
Confidence 0 0011124455678988877321 11 11221 3456999999999986433222222234
Q ss_pred Eecchhhcc-------ccCCCCeEEEEcCcHHHHHHHHHHHhc-CC-eeEEEcccCc-cCCCCCHHHHHHHHHHHHhcCc
Q 010573 201 IVSSTGALA-------LNEVPKKLVVIGAGYIGLEMGSVWARL-GS-EVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 201 ~~~~~~~~~-------~~~~~~~vvVvG~G~~g~e~A~~l~~~-g~-~Vtlv~~~~~-~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
+++..+++. ....+++|+|||+|.+|+|+|..+.+. |. +|+++++++. .++..++++. +.+ +.||
T Consensus 646 v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~----~al-eeGV 720 (1012)
T TIGR03315 646 VLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELE----EAL-EDGV 720 (1012)
T ss_pred eeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHH----HHH-HcCC
Confidence 554444332 124589999999999999999999887 75 7999998763 4555554433 333 4799
Q ss_pred EEEcCceEEEEEEcCCeEEEEEe------------ecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeec
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLE------------PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~------------~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~V 338 (507)
++++...+.+++ ++.+.+... ...+++..++++|.||+|+|..|++.+ ++..|++++++|++.|
T Consensus 721 e~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld~~G~I~V 796 (1012)
T TIGR03315 721 DFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVV 796 (1012)
T ss_pred EEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH--HHhcCcccCCCCCEEe
Confidence 999999888886 344433211 011345568999999999999999987 5677899888899999
Q ss_pred CCC-CCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCC
Q 010573 339 NER-FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 339 d~~-~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
|++ ++|+.|+|||+|||+.+|..+..|+.+|+.||.+|++.
T Consensus 797 D~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 797 NQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 987 89999999999999988989999999999999999864
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=269.84 Aligned_cols=290 Identities=26% Similarity=0.329 Sum_probs=200.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
....+|+|||+|++|+++|..|++.|++|++||+.+.+||..... ++.. ..+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~--------------------------~~~ 67 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG--IPEF--------------------------RIP 67 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec--Cccc--------------------------ccC
Confidence 345799999999999999999999999999999988888754211 0100 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec-C------CEEEEEccCCceEEEEeCeEEEccCCC-CC--C
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS-P------SEVSVDTIEGGNTVVKGKNIIIATGSD-VK--S 190 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~------~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~--~ 190 (507)
.. .+....+ .+.+.++++..++....+ . ..........+...+.||+||||||+. |. .
T Consensus 68 ~~-----------~~~~~~~-~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ 135 (352)
T PRK12770 68 IE-----------RVREGVK-ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLG 135 (352)
T ss_pred HH-----------HHHHHHH-HHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCC
Confidence 00 0111112 233448888777543221 1 111111111111247899999999994 43 3
Q ss_pred CCCCccCCceEecchhhc-----------ccc----CCCCeEEEEcCcHHHHHHHHHHHhcCCe-eEEEcccCccCCCCC
Q 010573 191 LPGITIDEKRIVSSTGAL-----------ALN----EVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVPSMD 254 (507)
Q Consensus 191 ~pg~~~~~~~~~~~~~~~-----------~~~----~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~d 254 (507)
+|+.. ...+++..+.. ... ..+++++|||+|++|+|+|..|.+.|.+ |+++++.+......
T Consensus 136 ipg~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~- 212 (352)
T PRK12770 136 IPGED--LPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPA- 212 (352)
T ss_pred CCCcc--ccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCC-
Confidence 45433 33444443221 011 1258999999999999999999999987 99998765432211
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeec---------------CCCceEEEEcCEEEEeecCCCCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA---------------AGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~---------------~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.....+.|+++||++++++.+.+++.++....+++... .++++.++++|.|++++|++|++.
T Consensus 213 ---~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 289 (352)
T PRK12770 213 ---GKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP 289 (352)
T ss_pred ---CHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCch
Confidence 13344568899999999999999976543333444321 134557899999999999999987
Q ss_pred CCCCcc-cCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 320 GLGLDK-IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 320 ~l~~~~-~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+ ... .|++++++|+|.||++++|+.|+|||+|||+..+.....|+.+|+.||.+|..
T Consensus 290 l--~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 290 F--AKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred h--hhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 5 333 78888888999999999999999999999998888999999999999999853
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=295.99 Aligned_cols=281 Identities=24% Similarity=0.274 Sum_probs=204.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+.++|+|||||||||+||.+|++.|++|+|+|+.+.+||...+ .+|...+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y--GIP~~rlp~-------------------------- 356 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY--GIPEFRLPN-------------------------- 356 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc--cCCCCcChH--------------------------
Confidence 4689999999999999999999999999999999999997432 244321110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CC--CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~--~~pg~~~~~ 198 (507)
.+.+...+.++..|+++..+.... ..+.+++. ....||+|+||||+. |+ .+||.+ .
T Consensus 357 ------------~vi~~~i~~l~~~Gv~f~~n~~vG-----~dit~~~l--~~~~yDAV~LAtGA~~pr~l~IpG~d--l 415 (944)
T PRK12779 357 ------------QLIDDVVEKIKLLGGRFVKNFVVG-----KTATLEDL--KAAGFWKIFVGTGAGLPTFMNVPGEH--L 415 (944)
T ss_pred ------------HHHHHHHHHHHhhcCeEEEeEEec-----cEEeHHHh--ccccCCEEEEeCCCCCCCcCCCCCCc--C
Confidence 011111244566789988775432 22444443 445799999999995 54 445533 4
Q ss_pred ceEecchhhccc----------------cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc-cCCCCCHHHHHHH
Q 010573 199 KRIVSSTGALAL----------------NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-IVPSMDGEIRKQF 261 (507)
Q Consensus 199 ~~~~~~~~~~~~----------------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~~~~~d~~~~~~~ 261 (507)
..+++..+++.. ...+++|+|||||.+|+|+|..+.+.|++|+++.+++. .+|....+ +
T Consensus 416 ~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e----~ 491 (944)
T PRK12779 416 LGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEE----L 491 (944)
T ss_pred cCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHH----H
Confidence 456666655421 11468999999999999999999999999999988764 24432222 3
Q ss_pred HHHHHhcCcEEEcCceEEEEEEcCC--eEE-EEEee--------------cCCCceEEEEcCEEEEeecCCCCCCCCCCc
Q 010573 262 QRSLEKQKMKFMLKTKVVGVDLSGD--GVK-LTLEP--------------AAGGEKTILEADVVLVSAGRTPFTAGLGLD 324 (507)
Q Consensus 262 ~~~l~~~Gv~i~~~~~v~~i~~~~~--~v~-v~~~~--------------~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (507)
... .+.||++++++.++++..+++ .+. +++.. ..+|+..++++|.||+|+|+.|+.... ..
T Consensus 492 ~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~-~~ 569 (944)
T PRK12779 492 HHA-LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMK-DA 569 (944)
T ss_pred HHH-HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhh-hc
Confidence 332 367999999999999976532 232 22210 012344679999999999999997532 34
Q ss_pred ccCceecCCCCeecCC-CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 325 KIGVETDKMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 325 ~~gl~~~~~G~i~Vd~-~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
..+++++++|.|+||+ .++||.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 570 ~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~ 623 (944)
T PRK12779 570 EPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIV 623 (944)
T ss_pred ccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHH
Confidence 4578889899999997 4889999999999999988899999999999999986
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=296.62 Aligned_cols=283 Identities=26% Similarity=0.337 Sum_probs=204.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...+||+||||||||++||..|++.|++|+|+|+.+.+||...+ .+|...+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~rlp-------------------------- 480 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY--GIPEFRLP-------------------------- 480 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCCCCC--------------------------
Confidence 45679999999999999999999999999999998888987432 23321100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CC--CCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~--~~pg~~~~ 197 (507)
.. +.....+.+++.++++..+.... . .+.+++. ....||+||||||+. |+ .+||..
T Consensus 481 -~~-----------~~~~~~~~l~~~gv~~~~~~~v~---~--~v~~~~l--~~~~ydavvlAtGa~~~~~l~ipG~~-- 539 (752)
T PRK12778 481 -KK-----------IVDVEIENLKKLGVKFETDVIVG---K--TITIEEL--EEEGFKGIFIASGAGLPNFMNIPGEN-- 539 (752)
T ss_pred -HH-----------HHHHHHHHHHHCCCEEECCCEEC---C--cCCHHHH--hhcCCCEEEEeCCCCCCCCCCCCCCC--
Confidence 00 01111234566789988765321 1 2223322 346799999999984 64 345533
Q ss_pred CceEecchhhccc--------------cCCCCeEEEEcCcHHHHHHHHHHHhcCCe-eEEEcccCcc-CCCCCHHHHHHH
Q 010573 198 EKRIVSSTGALAL--------------NEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI-VPSMDGEIRKQF 261 (507)
Q Consensus 198 ~~~~~~~~~~~~~--------------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~-~~~~d~~~~~~~ 261 (507)
...+++..+++.. ...+++|+|||+|.+|+|+|..+.+.|.+ |+++++++.. ++....++
T Consensus 540 ~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~---- 615 (752)
T PRK12778 540 SNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV---- 615 (752)
T ss_pred CCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----
Confidence 3456666554321 12468999999999999999999999997 9999987642 44332222
Q ss_pred HHHHHhcCcEEEcCceEEEEEEcCC-eEE-EEEeec------C---------CCceEEEEcCEEEEeecCCCCCCCCCCc
Q 010573 262 QRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEPA------A---------GGEKTILEADVVLVSAGRTPFTAGLGLD 324 (507)
Q Consensus 262 ~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~-v~~~~~------~---------~g~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (507)
+.+++.||++++++.+.++..+++ .+. +.+... . +++..++++|.||+|+|..|+..++ ..
T Consensus 616 -~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~-~~ 693 (752)
T PRK12778 616 -KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVP-SS 693 (752)
T ss_pred -HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcccc-cc
Confidence 346778999999999999876543 332 333210 0 1334579999999999999998653 22
Q ss_pred ccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 325 ~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
..+++++++|.|.||++++|+.|||||+|||+.++.++..|+.+|+.||.+|..
T Consensus 694 ~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 694 IPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred ccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 347888888999999999999999999999998888899999999999999863
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=277.22 Aligned_cols=287 Identities=23% Similarity=0.310 Sum_probs=200.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...++|+||||||||++||..|++.|++|+|||+.+.+||...+ .+|...+ .
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~~--------------------------~ 192 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY--GIPDFKL--------------------------E 192 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee--cCCcccC--------------------------C
Confidence 34579999999999999999999999999999998889886432 2222100 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CC--CCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~--~~pg~~~~ 197 (507)
.. +.....+++.+.+++++.+.....+ +...+ ....||+||+|||+. |. .+||..
T Consensus 193 -~~-----------~~~~~~~~~~~~gv~~~~~~~v~~~-----~~~~~---~~~~~d~vvlAtGa~~~~~l~ipG~~-- 250 (471)
T PRK12810 193 -KE-----------VIDRRIELMEAEGIEFRTNVEVGKD-----ITAEE---LLAEYDAVFLGTGAYKPRDLGIPGRD-- 250 (471)
T ss_pred -HH-----------HHHHHHHHHHhCCcEEEeCCEECCc-----CCHHH---HHhhCCEEEEecCCCCCCcCCCCCcc--
Confidence 00 1111124566778998877644221 11111 234799999999997 43 355543
Q ss_pred CceEecchhhcc--------------ccCCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCccCCCC-CH----HH
Q 010573 198 EKRIVSSTGALA--------------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPSM-DG----EI 257 (507)
Q Consensus 198 ~~~~~~~~~~~~--------------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~-d~----~~ 257 (507)
...+++..+++. ....+++|+|||+|++|+|+|..+.+.|. +|++++..+...... +. ..
T Consensus 251 ~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~ 330 (471)
T PRK12810 251 LDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYW 330 (471)
T ss_pred CCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCccc
Confidence 334444322210 12347999999999999999999999886 788665444221111 00 00
Q ss_pred -HHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeec---------CCCceEEEEcCEEEEeecCCCCCCCCCCccc
Q 010573 258 -RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA---------AGGEKTILEADVVLVSAGRTPFTAGLGLDKI 326 (507)
Q Consensus 258 -~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~---------~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~ 326 (507)
.....+.+++.||++++++.++++..+++.+. +++... ..++..++++|.||+|+|.+|+...+ ++..
T Consensus 331 ~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l-~~~~ 409 (471)
T PRK12810 331 PMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL-LAQF 409 (471)
T ss_pred chHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh-cccc
Confidence 11134556788999999999999976555543 443311 12344689999999999999986533 6777
Q ss_pred CceecCCCCeecC-CCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 327 GVETDKMGRIPVN-ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 327 gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+++++++|.+++| ++++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 410 gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 410 GVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDA 462 (471)
T ss_pred CcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHH
Confidence 8889888999998 789999999999999998888889999999999999863
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=281.70 Aligned_cols=279 Identities=23% Similarity=0.307 Sum_probs=201.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..++|+||||||||++||..|++.|++|+|+|+++.+||.+.+ .+|...+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~--gip~~~~~--------------------------- 242 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY--GIPRFRLP--------------------------- 242 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee--cCCCCCCC---------------------------
Confidence 4579999999999999999999999999999999899997532 12211000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC---CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~---~~pg~~~~~ 198 (507)
.. +.....+.+.+.++++..+.....+ +...+. ...||+|+||||+.+. .+||.+ .
T Consensus 243 ~~-----------~~~~~~~~l~~~Gv~i~~~~~v~~d-----v~~~~~---~~~~DaVilAtGa~~~~~~~ipG~~--~ 301 (652)
T PRK12814 243 ES-----------VIDADIAPLRAMGAEFRFNTVFGRD-----ITLEEL---QKEFDAVLLAVGAQKASKMGIPGEE--L 301 (652)
T ss_pred HH-----------HHHHHHHHHHHcCCEEEeCCcccCc-----cCHHHH---HhhcCEEEEEcCCCCCCCCCCCCcC--c
Confidence 00 0111123455678888776532111 222221 2359999999999763 345533 3
Q ss_pred ceEecchhhcc------ccCCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCc-cCCCCCHHHHHHHHHHHHhcCc
Q 010573 199 KRIVSSTGALA------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAAD-IVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 199 ~~~~~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~-~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
..+++..+++. ....+++|+|||+|.+|+|+|..+.+.|. +|+++++.++ .++..+.++ .+. .+.||
T Consensus 302 ~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a-~~eGV 376 (652)
T PRK12814 302 PGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EEA-LAEGV 376 (652)
T ss_pred CCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----HHH-HHcCC
Confidence 34555444432 12358999999999999999999999996 6999998765 355544443 222 35799
Q ss_pred EEEcCceEEEEEEcCCeEEEE---Eeec---C---------CCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCC
Q 010573 271 KFMLKTKVVGVDLSGDGVKLT---LEPA---A---------GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~---~~~~---~---------~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~ 335 (507)
++++++.+.++..+++++.++ +... . +++..++++|.||+++|..|++.+ ++..|++++.+|+
T Consensus 377 ~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~~~~~G~ 454 (652)
T PRK12814 377 SLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSRNGT 454 (652)
T ss_pred cEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc--ccccCccccCCCc
Confidence 999999999997766654433 2211 0 233457999999999999999986 5667888888899
Q ss_pred eecCC-CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 336 IPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 336 i~Vd~-~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
|.||+ +++|+.|||||+||++.++.++..|+.+|+.||.+|.
T Consensus 455 I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 455 VKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred EeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 99997 5889999999999999888889999999999999985
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=276.50 Aligned_cols=281 Identities=21% Similarity=0.326 Sum_probs=199.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..++|+||||||||++||..|++.|++|+|+|+.+.+||...+ .+|...+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~--gip~~~l~~-------------------------- 377 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF--GIPAFKLDK-------------------------- 377 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee--cCCCccCCH--------------------------
Confidence 4679999999999999999999999999999999999997432 234221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC---CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~---~~pg~~~~~ 198 (507)
.+.....+++++.|+++..+.....+ +...+ ....||+|++|||+.+. .+|+...
T Consensus 378 ------------~~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~~---~~~~~DavilAtGa~~~~~l~i~g~~~-- 435 (654)
T PRK12769 378 ------------SLLARRREIFSAMGIEFELNCEVGKD-----ISLES---LLEDYDAVFVGVGTYRSMKAGLPNEDA-- 435 (654)
T ss_pred ------------HHHHHHHHHHHHCCeEEECCCEeCCc-----CCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCCC--
Confidence 01111134556678888766432111 11111 12369999999998653 4555433
Q ss_pred ceEecchhh--------cc---------ccCCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCcc-CCCCCHHHHH
Q 010573 199 KRIVSSTGA--------LA---------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK 259 (507)
Q Consensus 199 ~~~~~~~~~--------~~---------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~d~~~~~ 259 (507)
..+++..++ .. ....+++|+|||+|.+|+|+|..+.+.|. +|+++++++.. ++..+.+
T Consensus 436 ~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e--- 512 (654)
T PRK12769 436 PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKE--- 512 (654)
T ss_pred CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHH---
Confidence 223322111 11 11246899999999999999999999996 69999887654 5544433
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEcC-CeE-EEEEeec------C---------CCceEEEEcCEEEEeecCCCCCCCCC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGV-KLTLEPA------A---------GGEKTILEADVVLVSAGRTPFTAGLG 322 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~~-~~v-~v~~~~~------~---------~g~~~~i~~D~vi~a~G~~p~~~~l~ 322 (507)
.+.+++.||++++++.++++..++ +.+ .+++... . .++..++++|.||+|+|+.|+...+
T Consensus 513 --~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~- 589 (654)
T PRK12769 513 --VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPW- 589 (654)
T ss_pred --HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccc-
Confidence 245678899999999999987543 333 2433210 1 2334579999999999999986433
Q ss_pred CcccCceecCCCCeecCC----CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 323 LDKIGVETDKMGRIPVNE----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 323 ~~~~gl~~~~~G~i~Vd~----~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
++..+++++++|.|.||+ +++|++|+|||+||++.++.++..|+.+|+.||.+|..
T Consensus 590 ~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 590 LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 567789999999999986 48999999999999999888999999999999999863
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.1e-31 Score=285.29 Aligned_cols=282 Identities=23% Similarity=0.294 Sum_probs=199.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+.++|+||||||||++||..|++.|++|+|+|+.+.+||...+ .+|...+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~--gip~~rl~--------------------------- 479 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY--GIPSFRLP--------------------------- 479 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec--cCCccCCC---------------------------
Confidence 4579999999999999999999999999999998889886332 23322110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CC--CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~--~~pg~~~~~ 198 (507)
..+.....+.+++.|+++..+.... ..+.+. +- .....||+||||||+. |+ .+||.. .
T Consensus 480 -----------~e~~~~~~~~l~~~Gv~~~~~~~vg---~~~~~~--~l-~~~~~yDaViIATGa~~pr~l~IpG~~--l 540 (1006)
T PRK12775 480 -----------RDIIDREVQRLVDIGVKIETNKVIG---KTFTVP--QL-MNDKGFDAVFLGVGAGAPTFLGIPGEF--A 540 (1006)
T ss_pred -----------HHHHHHHHHHHHHCCCEEEeCCccC---CccCHH--HH-hhccCCCEEEEecCCCCCCCCCCCCcC--C
Confidence 0011112345666789888775321 112221 10 0124699999999995 54 455543 3
Q ss_pred ceEecchhhccc---------------cCCCCeEEEEcCcHHHHHHHHHHHhcCCe-eEEEcccCcc-CCCCCHHHHHHH
Q 010573 199 KRIVSSTGALAL---------------NEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADI-VPSMDGEIRKQF 261 (507)
Q Consensus 199 ~~~~~~~~~~~~---------------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~-~~~~d~~~~~~~ 261 (507)
..+++..+++.. ...+++|+|||+|.+|+|+|..+.++|.+ |+++.++... ++....+
T Consensus 541 ~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e----- 615 (1006)
T PRK12775 541 GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEE----- 615 (1006)
T ss_pred CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHH-----
Confidence 456666554321 12479999999999999999999999975 7888766533 3322211
Q ss_pred HHHHHhcCcEEEcCceEEEEEEcC-CeEE-EEEee------cC--------CCceEEEEcCEEEEeecCCCCCCCCCCcc
Q 010573 262 QRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEP------AA--------GGEKTILEADVVLVSAGRTPFTAGLGLDK 325 (507)
Q Consensus 262 ~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~------~~--------~g~~~~i~~D~vi~a~G~~p~~~~l~~~~ 325 (507)
.+.+++.||++++++.++++..++ +.+. +++.. .. +++..++++|.||+|+|..|+..++ ...
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~-~~~ 694 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIIT-QST 694 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhh-hcc
Confidence 234667899999999999997643 3332 43321 01 2233579999999999999998753 223
Q ss_pred cCceecCCCCeecCC-----CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 326 IGVETDKMGRIPVNE-----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 326 ~gl~~~~~G~i~Vd~-----~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
.++.++++|.|.+|+ .++||+|||||+||++.++.++..|+.+|+.||.+|.
T Consensus 695 ~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 695 PGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred CCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 468888889999997 7899999999999999988899999999999999985
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=263.58 Aligned_cols=281 Identities=22% Similarity=0.333 Sum_probs=201.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..++|+|||+||+|++||..|++.|++|+|+|+.+.+||...+ .+|...+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~~~~-------------------------- 191 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFKLDK-------------------------- 191 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCccccCCH--------------------------
Confidence 4579999999999999999999999999999999999986432 233321100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC---CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~---~~pg~~~~~ 198 (507)
.+.....+++++.|++++.+..... .+...+ ....||+||+|||+.+. .+||...
T Consensus 192 ------------~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~~~---~~~~~D~vilAtGa~~~~~~~i~g~~~-- 249 (467)
T TIGR01318 192 ------------AVLSRRREIFTAMGIEFHLNCEVGR-----DISLDD---LLEDYDAVFLGVGTYRSMRGGLPGEDA-- 249 (467)
T ss_pred ------------HHHHHHHHHHHHCCCEEECCCEeCC-----ccCHHH---HHhcCCEEEEEeCCCCCCcCCCCCcCC--
Confidence 0111123556677888876643211 111111 12469999999999863 4565443
Q ss_pred ceEecchhhc--------cc---------cCCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCcc-CCCCCHHHHH
Q 010573 199 KRIVSSTGAL--------AL---------NEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK 259 (507)
Q Consensus 199 ~~~~~~~~~~--------~~---------~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~d~~~~~ 259 (507)
..+++..++. .+ ...+++++|||+|.+|+|+|..+.++|. +||++++++.. ++..+.++
T Consensus 250 ~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-- 327 (467)
T TIGR01318 250 PGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-- 327 (467)
T ss_pred CCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH--
Confidence 3344322211 00 1246899999999999999999999995 79999987764 55444333
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEcC-CeEE-EEEeec---------------CCCceEEEEcCEEEEeecCCCCCCCCC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPA---------------AGGEKTILEADVVLVSAGRTPFTAGLG 322 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~~---------------~~g~~~~i~~D~vi~a~G~~p~~~~l~ 322 (507)
+.+++.||++++++.++++..++ +.+. +++... .+++..++++|.||+++|++|+...+
T Consensus 328 ---~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~- 403 (467)
T TIGR01318 328 ---ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW- 403 (467)
T ss_pred ---HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccc-
Confidence 34567899999999999997643 3332 333210 02345689999999999999986433
Q ss_pred CcccCceecCCCCeecC----CCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 323 LDKIGVETDKMGRIPVN----ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 323 ~~~~gl~~~~~G~i~Vd----~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
++..+++++++|+|.|| ++++|+.|+|||+||++.++.++..|+.+|+.||.+|..
T Consensus 404 ~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 404 LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 56678888888999999 678999999999999998888889999999999999853
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=256.73 Aligned_cols=285 Identities=24% Similarity=0.316 Sum_probs=193.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..++|+|||||+||++||..|++.|++|+|+|+.+.+||.+.+ .+|...+ +
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~--gip~~~~--------------------------~- 192 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY--GIPNMKL--------------------------D- 192 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec--cCCCccC--------------------------C-
Confidence 4479999999999999999999999999999998888886432 1221100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CC--CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~--~~pg~~~~~ 198 (507)
.. +.....+++++.+++++.+.....+ +.. + .....||+|++|||+. |. .+||.+ .
T Consensus 193 ~~-----------~~~~~~~~~~~~Gv~~~~~~~v~~~-----~~~-~--~~~~~~d~VilAtGa~~~~~l~i~G~~--~ 251 (485)
T TIGR01317 193 KA-----------IVDRRIDLLSAEGIDFVTNTEIGVD-----ISA-D--ELKEQFDAVVLAGGATKPRDLPIPGRE--L 251 (485)
T ss_pred HH-----------HHHHHHHHHHhCCCEEECCCEeCCc-----cCH-H--HHHhhCCEEEEccCCCCCCcCCCCCcC--C
Confidence 00 0111134566778998877543211 111 1 1235799999999998 54 445543 3
Q ss_pred ceEecchhhc----------------cccCCCCeEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCccCCCC--------
Q 010573 199 KRIVSSTGAL----------------ALNEVPKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVPSM-------- 253 (507)
Q Consensus 199 ~~~~~~~~~~----------------~~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~~-------- 253 (507)
..+++..+++ .....+++|+|||+|.+|+|+|..+.+.| .+|+++++.+..+...
T Consensus 252 ~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~ 331 (485)
T TIGR01317 252 KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPE 331 (485)
T ss_pred CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCc
Confidence 3344332211 11134799999999999999998888877 4799998877643211
Q ss_pred -CH--HHHHHHHHHHHhcCcEE-EcCceEEEEEEcC-CeEE-EEEe-----ecC---------CCceEEEEcCEEEEeec
Q 010573 254 -DG--EIRKQFQRSLEKQKMKF-MLKTKVVGVDLSG-DGVK-LTLE-----PAA---------GGEKTILEADVVLVSAG 313 (507)
Q Consensus 254 -d~--~~~~~~~~~l~~~Gv~i-~~~~~v~~i~~~~-~~v~-v~~~-----~~~---------~g~~~~i~~D~vi~a~G 313 (507)
.. +.....++..+..|+.+ ++++.+.++..++ +.+. +++. ..+ .++..++++|.||+|+|
T Consensus 332 ~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG 411 (485)
T TIGR01317 332 WPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMG 411 (485)
T ss_pred cchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccC
Confidence 11 12223344444457654 4677788887653 3333 3321 111 23345899999999999
Q ss_pred CC-CCCCCCCCcccCceecCCCCee-cCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 314 RT-PFTAGLGLDKIGVETDKMGRIP-VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 314 ~~-p~~~~l~~~~~gl~~~~~G~i~-Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
.. |++.+ ++..+++++++|.+. +|++++|+.|||||+|||+.++..+..|+.+|+.||.+|..
T Consensus 412 ~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 412 FVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred cCCCcccc--ccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 86 88875 567788888888885 56789999999999999998888889999999999999853
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=263.74 Aligned_cols=282 Identities=20% Similarity=0.285 Sum_probs=200.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
...+|+|||+||||+++|..|++.|++|+|+|+++.+||.+.+ + +|...+ +.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~-g-ip~~~l--------------------------~~ 360 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF-G-IPPFKL--------------------------DK 360 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec-c-CCcccC--------------------------CH
Confidence 4679999999999999999999999999999999999987432 2 222111 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC---CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~---~~pg~~~~~ 198 (507)
.+.....++++..|+++..+..... .+...+ ....||+|++|||+.+. .+|+...
T Consensus 361 ------------~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~~~---l~~~~DaV~latGa~~~~~~~i~g~~~-- 418 (639)
T PRK12809 361 ------------TVLSQRREIFTAMGIDFHLNCEIGR-----DITFSD---LTSEYDAVFIGVGTYGMMRADLPHEDA-- 418 (639)
T ss_pred ------------HHHHHHHHHHHHCCeEEEcCCccCC-----cCCHHH---HHhcCCEEEEeCCCCCCCCCCCCCCcc--
Confidence 0111123456677888877653211 111111 23469999999999753 3455432
Q ss_pred ceEecchh--------hccc---------cCCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCcc-CCCCCHHHHH
Q 010573 199 KRIVSSTG--------ALAL---------NEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEIRK 259 (507)
Q Consensus 199 ~~~~~~~~--------~~~~---------~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~d~~~~~ 259 (507)
..+++..+ ...+ ...+++++|+|+|.+++++|..+.+.|. +||++++++.. ++..+.++.
T Consensus 419 ~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~- 497 (639)
T PRK12809 419 PGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV- 497 (639)
T ss_pred CCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-
Confidence 23333211 1111 1247899999999999999999999995 79999987655 554443332
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEcC-CeEE-EEEee---c---C---------CCceEEEEcCEEEEeecCCCCCCCCC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEP---A---A---------GGEKTILEADVVLVSAGRTPFTAGLG 322 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~---~---~---------~g~~~~i~~D~vi~a~G~~p~~~~l~ 322 (507)
.+++.||++++++.++++..++ +.+. +.+.. . . .++..++++|.||+|+|+.|+...+
T Consensus 498 ----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~- 572 (639)
T PRK12809 498 ----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPW- 572 (639)
T ss_pred ----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccc-
Confidence 2467899999999999997654 3343 33211 0 0 2345689999999999999976433
Q ss_pred CcccCceecCCCCeecCC----CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCC
Q 010573 323 LDKIGVETDKMGRIPVNE----RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 323 ~~~~gl~~~~~G~i~Vd~----~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
++..+++++++|.|.||+ +++|+.|+|||+||++.++.++..|+.+|+.||.+|...
T Consensus 573 ~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~ 633 (639)
T PRK12809 573 LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTL 633 (639)
T ss_pred ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 567789999889999986 488999999999999988889999999999999998643
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=232.24 Aligned_cols=290 Identities=29% Similarity=0.404 Sum_probs=215.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..|||+||||||||-+||.+.+|+|.+.-|+- +++||+.+..-.|- ++ ..-+..+-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IE-------------------Nf---Isv~~teG 265 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIE-------------------NF---ISVPETEG 265 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchh-------------------he---eccccccc
Confidence 46999999999999999999999999987773 57898765322110 00 00011112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEe-----cCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI-----SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPG 193 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-----d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg 193 (507)
+ ++...++...+++.|++... .+..+ ..+-..|++.+| -.+.++.+|||||++.+ .+||
T Consensus 266 p-----------kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPG 332 (520)
T COG3634 266 P-----------KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPG 332 (520)
T ss_pred h-----------HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCc
Confidence 2 22333444555566666544 22222 234577888898 88999999999999875 5677
Q ss_pred Cc-cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh-cCcE
Q 010573 194 IT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMK 271 (507)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~ 271 (507)
.. .....+..+..+......+|+|.|||||.+|+|.|-.|+-.-..||+++..+.+- .-+.+++.++. .+++
T Consensus 333 E~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk------AD~VLq~kl~sl~Nv~ 406 (520)
T COG3634 333 EDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK------ADAVLQDKLRSLPNVT 406 (520)
T ss_pred hHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh------hHHHHHHHHhcCCCcE
Confidence 54 4455666666666666679999999999999999999998888999998665431 22345555554 4999
Q ss_pred EEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
++++...+++.++++++. +...+..+++...++-+-|++-+|..||+++ ++.. ++++++|-|.||....||+|+||
T Consensus 407 ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIivD~~g~TsvpGvF 483 (520)
T COG3634 407 IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDARGETNVPGVF 483 (520)
T ss_pred EEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhH--hhch-hhcCcCccEEEecCCCcCCCcee
Confidence 999999999999877776 7777777778888999999999999999999 4555 89999999999999999999999
Q ss_pred EecCCCCCC-CcHhHHHHHHHHHHHHHc
Q 010573 351 AIGDVIPGP-MLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 351 A~GD~a~~~-~~~~~A~~~g~~aa~~i~ 377 (507)
|+|||+..| .....|+-+|..|+...+
T Consensus 484 AAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 484 AAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ecCcccCCccceEEEEecCcchhhhhhh
Confidence 999999654 344556666666665543
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=259.97 Aligned_cols=281 Identities=25% Similarity=0.321 Sum_probs=191.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
....+|+|||+|+||+++|..|++.|++|+|+|+++..||...+ .+|...+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~--~i~~~~~~-------------------------- 332 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY--GIPSYRLP-------------------------- 332 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee--cCCcccCC--------------------------
Confidence 45678999999999999999999999999999998888886432 12211100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC---CCCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV---KSLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p---~~~pg~~~~ 197 (507)
.. +.....+++++.+++++.+.....+ +..++ ....||+||+|||+.+ +.+||..
T Consensus 333 -~~-----------~~~~~~~~~~~~gv~~~~~~~v~~~-----~~~~~---~~~~yD~vilAtGa~~~r~l~i~G~~-- 390 (604)
T PRK13984 333 -DE-----------ALDKDIAFIEALGVKIHLNTRVGKD-----IPLEE---LREKHDAVFLSTGFTLGRSTRIPGTD-- 390 (604)
T ss_pred -HH-----------HHHHHHHHHHHCCcEEECCCEeCCc-----CCHHH---HHhcCCEEEEEcCcCCCccCCCCCcC--
Confidence 00 0111124566778888777543211 11111 2357999999999864 3455543
Q ss_pred CceEecchhhcc-c----------cCCCCeEEEEcCcHHHHHHHHHHHhcCC------eeEEEccc--CccCCCCCHHHH
Q 010573 198 EKRIVSSTGALA-L----------NEVPKKLVVIGAGYIGLEMGSVWARLGS------EVTVVEFA--ADIVPSMDGEIR 258 (507)
Q Consensus 198 ~~~~~~~~~~~~-~----------~~~~~~vvVvG~G~~g~e~A~~l~~~g~------~Vtlv~~~--~~~~~~~d~~~~ 258 (507)
...+++..+.+. + ...+++++|||||.+|+|+|..+.+++. +|+++... ...++..+.+
T Consensus 391 ~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e-- 468 (604)
T PRK13984 391 HPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEE-- 468 (604)
T ss_pred CcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHH--
Confidence 334454443332 1 1237899999999999999999998853 67876432 2223332222
Q ss_pred HHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeec-----C---------CCceEEEEcCEEEEeecCCCCCCCCCC
Q 010573 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA-----A---------GGEKTILEADVVLVSAGRTPFTAGLGL 323 (507)
Q Consensus 259 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~-----~---------~g~~~~i~~D~vi~a~G~~p~~~~l~~ 323 (507)
+.+ +.+.||++++++.++++..+++.+. +++... . +++..++++|.|++|+|++|++.++..
T Consensus 469 --~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~ 545 (604)
T PRK13984 469 --IEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPE 545 (604)
T ss_pred --HHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhh
Confidence 222 2357999999998888866555443 433210 0 234568999999999999999887531
Q ss_pred c-ccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 324 D-KIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 324 ~-~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+ ..+++. ++|.|.||+++||++|+|||+||++.++.+ ..|+.+|+.||.+|..
T Consensus 546 ~~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 546 ELKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGIDM 599 (604)
T ss_pred hhccCccc-cCCeEEeCCCCccCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHHH
Confidence 1 123555 358899999999999999999999988764 6799999999999853
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=236.31 Aligned_cols=292 Identities=21% Similarity=0.318 Sum_probs=210.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
..+..+|||+|+|.+|.+....|-...++|++|++++.+ +.....||-.. . .+
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF----lFTPLLpS~~v----------------G-------Tv 104 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF----LFTPLLPSTTV----------------G-------TV 104 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccce----EEeeccCCccc----------------c-------ce
Confidence 445689999999999999999998889999999986643 11111222110 0 01
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-hC-CcEEEEeEEEEecCCEEEEEc----cCC--ceEEEEeCeEEEccCCCC--C
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFK-KN-KVTYVKGYGKFISPSEVSVDT----IEG--GNTVVKGKNIIIATGSDV--K 189 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~d~~~~~v~~----~~g--~~~~~~~d~lvlAtG~~p--~ 189 (507)
+.+.+. +-+..... .+ ++.++..+...+|+....|.. .++ ....+.||+||+|+|+.+ +
T Consensus 105 e~rSIv-----------EPIr~i~r~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 105 ELRSIV-----------EPIRAIARKKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eehhhh-----------hhHHHHhhccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 111111 11111121 22 678888888888877665543 222 346899999999999998 4
Q ss_pred CCCCCccCCceEecchhhccc-------------c-------CCCCeEEEEcCcHHHHHHHHHHHhc-------------
Q 010573 190 SLPGITIDEKRIVSSTGALAL-------------N-------EVPKKLVVIGAGYIGLEMGSVWARL------------- 236 (507)
Q Consensus 190 ~~pg~~~~~~~~~~~~~~~~~-------------~-------~~~~~vvVvG~G~~g~e~A~~l~~~------------- 236 (507)
.+||.......+--..++.++ . ..-.+++|||||++|+|+|..|+.+
T Consensus 174 gipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~ 253 (491)
T KOG2495|consen 174 GIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELK 253 (491)
T ss_pred CCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcch
Confidence 678776444333333333322 1 1124799999999999999998765
Q ss_pred -CCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 237 -GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 237 -g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
..+||+++..|.+++.||+.+.+..++++.+.||++.+++.|.++ ++..+.+... +|+.+++++-+++|++|..
T Consensus 254 ~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V--~~~~I~~~~~---~g~~~~iPYG~lVWatG~~ 328 (491)
T KOG2495|consen 254 KDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKV--TEKTIHAKTK---DGEIEEIPYGLLVWATGNG 328 (491)
T ss_pred hheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEee--cCcEEEEEcC---CCceeeecceEEEecCCCC
Confidence 358999999999999999999999999999999999999999998 4445555543 5566899999999999988
Q ss_pred CCCCCCCCcccCceecCCC--CeecCCCCC-CCCCCeEEecCCC---CCCCcHhHHHHHHHHHHHHHc
Q 010573 316 PFTAGLGLDKIGVETDKMG--RIPVNERFA-TNIPGVYAIGDVI---PGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 316 p~~~~l~~~~~gl~~~~~G--~i~Vd~~~~-t~~~~IyA~GD~a---~~~~~~~~A~~~g~~aa~~i~ 377 (507)
|..- ...+.-.+++.| ++.||++|| .+.+||||+|||+ +.+..++.|.+||.++|+++-
T Consensus 329 ~rp~---~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 329 PRPV---IKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred Cchh---hhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 8653 223333344445 899999999 6899999999999 334589999999999999873
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=239.59 Aligned_cols=287 Identities=22% Similarity=0.290 Sum_probs=193.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHH--CCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQ--LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
...+|+||||||||++||..|++ .|++|+|+|+.+.+||... .+..|.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr-~gvaP~~~~~------------------------- 78 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR-SGVAPDHPET------------------------- 78 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe-eccCCCcchh-------------------------
Confidence 35689999999999999999987 6999999999999998643 2322321100
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC-C--CCCCCcc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITI 196 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p-~--~~pg~~~ 196 (507)
..+...+..++...+++++.+.... ..+.+++ ....||+||||||+.+ . .+||.+
T Consensus 79 -------------k~v~~~~~~~~~~~~v~~~~nv~vg-----~dvtl~~---L~~~yDaVIlAtGa~~~~~l~IpG~d- 136 (491)
T PLN02852 79 -------------KNVTNQFSRVATDDRVSFFGNVTLG-----RDVSLSE---LRDLYHVVVLAYGAESDRRLGIPGED- 136 (491)
T ss_pred -------------HHHHHHHHHHHHHCCeEEEcCEEEC-----ccccHHH---HhhhCCEEEEecCCCCCCCCCCCCCC-
Confidence 0111222344555677776543221 1123322 2247999999999975 2 455543
Q ss_pred CCceEecchhhcc----------c---cCCCCeEEEEcCcHHHHHHHHHHHhc--------------------CC-eeEE
Q 010573 197 DEKRIVSSTGALA----------L---NEVPKKLVVIGAGYIGLEMGSVWARL--------------------GS-EVTV 242 (507)
Q Consensus 197 ~~~~~~~~~~~~~----------~---~~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g~-~Vtl 242 (507)
...+++..++.. + ...+++++|||+|++|+|+|..|.+. |. +|++
T Consensus 137 -~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~i 215 (491)
T PLN02852 137 -LPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYL 215 (491)
T ss_pred -CCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEE
Confidence 445666655532 1 12478999999999999999998875 64 6999
Q ss_pred EcccCcc-CCCCCHHHHH-------------------------------------HHHHHHHh---------cCcEEEcC
Q 010573 243 VEFAADI-VPSMDGEIRK-------------------------------------QFQRSLEK---------QKMKFMLK 275 (507)
Q Consensus 243 v~~~~~~-~~~~d~~~~~-------------------------------------~~~~~l~~---------~Gv~i~~~ 275 (507)
+.|+... .+...+++.+ .+.+...+ +++.+++.
T Consensus 216 v~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~ 295 (491)
T PLN02852 216 VGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFF 295 (491)
T ss_pred EEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEcc
Confidence 9888743 2221222211 12222112 57999999
Q ss_pred ceEEEEEEc--C-CeEE-EEEeec--------------CCCceEEEEcCEEEEeecCC--CCCCC-CCCcccCceecCCC
Q 010573 276 TKVVGVDLS--G-DGVK-LTLEPA--------------AGGEKTILEADVVLVSAGRT--PFTAG-LGLDKIGVETDKMG 334 (507)
Q Consensus 276 ~~v~~i~~~--~-~~v~-v~~~~~--------------~~g~~~~i~~D~vi~a~G~~--p~~~~-l~~~~~gl~~~~~G 334 (507)
...++|..+ + +.+. +++... .+++.+++++|.||.++|++ |...+ + ....++..+.+|
T Consensus 296 ~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f-~~~~gv~~n~~G 374 (491)
T PLN02852 296 RNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPF-DHKRGVVPNVHG 374 (491)
T ss_pred CCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcc-ccCcCeeECCCc
Confidence 999999742 1 2332 444310 13455679999999999998 55542 2 233467778889
Q ss_pred CeecCCCCCCCCCCeEEecCCCCCCC-cHhHHHHHHHHHHHHHcC
Q 010573 335 RIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 335 ~i~Vd~~~~t~~~~IyA~GD~a~~~~-~~~~A~~~g~~aa~~i~~ 378 (507)
+|.+|+.++|++|||||+|||..+|. +...++.+|+.++++|+.
T Consensus 375 ~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 375 RVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAE 419 (491)
T ss_pred eEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHH
Confidence 99999988999999999999998776 778899999999999874
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=236.48 Aligned_cols=382 Identities=27% Similarity=0.302 Sum_probs=268.2
Q ss_pred EEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 46 VVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 46 vvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
++|||+|++|+++|..+++. +.+++++.++...... .|.-...+ ..+.. ....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~----~~~~~~~~---------------~~~~~------~~~~ 55 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYY----RCPLSLYV---------------GGGIA------SLED 55 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCC----CCccchHH---------------hcccC------CHHH
Confidence 58999999999999999886 5678877775433211 00000000 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
+..... +..+.++++..+ .+..+|+....+.+.++ .+.||++++|||++|...++.. ...++
T Consensus 56 -----------~~~~~~-~~~~~~i~~~~~~~v~~id~~~~~v~~~~g---~~~yd~LvlatGa~~~~~~~~~--~~~~~ 118 (415)
T COG0446 56 -----------LRYPPR-FNRATGIDVRTGTEVTSIDPENKVVLLDDG---EIEYDYLVLATGARPRPPPISD--WEGVV 118 (415)
T ss_pred -----------hcccch-hHHhhCCEEeeCCEEEEecCCCCEEEECCC---cccccEEEEcCCCcccCCCccc--cCceE
Confidence 000001 123557888776 57889998888888887 8899999999999997665222 22223
Q ss_pred cc---hhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCC-HHHHHHHHHHHHhcCcEEEcC
Q 010573 203 SS---TGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD-GEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 203 ~~---~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d-~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
+. .+...+. ...++++|+|+|++|+|+|..+.+.|++|++++..+++++.+. +++.+.+.+.+++.||+++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 198 (415)
T COG0446 119 TLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLG 198 (415)
T ss_pred EECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeC
Confidence 22 2222221 1158999999999999999999999999999999999988777 899999999999999999999
Q ss_pred ceEEEEEEcCCeEE---EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccC-ceecCCCCeecCCCCCCC-CCCeE
Q 010573 276 TKVVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG-VETDKMGRIPVNERFATN-IPGVY 350 (507)
Q Consensus 276 ~~v~~i~~~~~~v~---v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g-l~~~~~G~i~Vd~~~~t~-~~~Iy 350 (507)
..+.+++...+... +... ++..+++|.+++++|.+|+..+ .+..+ .....+|+|.||++++|+ .++||
T Consensus 199 ~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~ 271 (415)
T COG0446 199 TKVVGVEGKGNTLVVERVVGI-----DGEEIKADLVIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVY 271 (415)
T ss_pred CceEEEEcccCcceeeEEEEe-----CCcEEEeeEEEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEE
Confidence 99999987665433 2332 5678999999999999999764 33333 145566889999999998 99999
Q ss_pred EecCCCCCC----------CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEE--EEcCCCeeeecCCHHHHHHcCCCEEEE
Q 010573 351 AIGDVIPGP----------MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGV--VYTHPEVASVGKTEEQVKELGVEYRVG 418 (507)
Q Consensus 351 A~GD~a~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~~~~~vG~~~~~~~~~~~~~~~~ 418 (507)
|+|||+..+ ..+..|..+++.++.++.+. ... ....+.. -.........|+++. +...++ ...
T Consensus 272 a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~ 346 (415)
T COG0446 272 AAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRI-PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVL 346 (415)
T ss_pred eccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-ccc-ccccCceEEEEcCeEEEEecCCcc--ccccee-eeE
Confidence 999998422 26788999999999999876 222 2333433 334556788898887 444444 222
Q ss_pred EEecCcccchhhcCC-cceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCc
Q 010573 419 KFPFLANSRAKAIDD-AEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVC 483 (507)
Q Consensus 419 ~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~ 483 (507)
.+......+....+. .....|++++.++++++|++. -. ....+..+..++..+.++.++....
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (415)
T COG0446 347 VVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALD 410 (415)
T ss_pred EEeccCcccccccCCCCeEEEEEEEcCcccceehhhh-HH-HHhhhhhhhhhhhhcCchhhhhhcc
Confidence 222333323333332 334788888889999999998 33 6668888999999999888886654
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=205.37 Aligned_cols=288 Identities=25% Similarity=0.262 Sum_probs=202.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC---C-CCCceeccccccchhhhhhhhHHHHHHHhhhhhC-CcccCcc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR---G-ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH-GVKFSSV 117 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~---~-~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 117 (507)
+.+|+|||+|||+..||++++|...+-+|+|-. + ..||+....-. .+++ |++.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~-------------------veNfPGFPd--- 65 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTD-------------------VENFPGFPD--- 65 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeec-------------------cccCCCCCc---
Confidence 348999999999999999999999999999962 1 23454322110 1111 1111
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCE--EEEEccCCceEEEEeCeEEEccCCCCC--CCCC
Q 010573 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE--VSVDTIEGGNTVVKGKNIIIATGSDVK--SLPG 193 (507)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~--~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg 193 (507)
.+.- ..+.+.++++.++.|.+++..++..+|... ..+.++ .+.+.+|.+|+|||+... .+||
T Consensus 66 gi~G-----------~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td---~~~v~~~avI~atGAsAkRl~~pg 131 (322)
T KOG0404|consen 66 GITG-----------PELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTD---ARPVTADAVILATGASAKRLHLPG 131 (322)
T ss_pred cccc-----------HHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEec---CCceeeeeEEEecccceeeeecCC
Confidence 0111 223444566777889999999887766444 344432 267899999999998764 5666
Q ss_pred Ccc---CCceEecchhhc--cccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHH-HHHHHh
Q 010573 194 ITI---DEKRIVSSTGAL--ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF-QRSLEK 267 (507)
Q Consensus 194 ~~~---~~~~~~~~~~~~--~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~-~~~l~~ 267 (507)
... ....+-.+.-+. .....+|..+|||||.+++|-|..|.+.+.+|++++|++++. .+..+ ++..+.
T Consensus 132 ~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fR------As~~Mq~ra~~n 205 (322)
T KOG0404|consen 132 EGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFR------ASKIMQQRAEKN 205 (322)
T ss_pred CCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhh------HHHHHHHHHhcC
Confidence 531 112222222222 222458999999999999999999999999999999998753 23333 344556
Q ss_pred cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCC-CCCC
Q 010573 268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FATN 345 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~-~~t~ 345 (507)
.+|++++|+.+.+..++++.+. +.+.+..+|+...++++-+++++|..|++.++ +. .+++|.+|+|++-+. -.||
T Consensus 206 pnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t~pgts~Ts 282 (322)
T KOG0404|consen 206 PNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVTRPGTSLTS 282 (322)
T ss_pred CCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHh--cC-ceeeccCceEEeccCccccc
Confidence 7999999999888876644332 66667777888899999999999999999984 44 699999999998854 6699
Q ss_pred CCCeEEecCCCCC-CCcHhHHHHHHHHHHHH
Q 010573 346 IPGVYAIGDVIPG-PMLAHKAEEDGVACVEF 375 (507)
Q Consensus 346 ~~~IyA~GD~a~~-~~~~~~A~~~g~~aa~~ 375 (507)
+|++||+||+... +..+..|...|-+||..
T Consensus 283 vpG~FAAGDVqD~kyRQAvTaAgsGciaald 313 (322)
T KOG0404|consen 283 VPGVFAAGDVQDKKYRQAVTAAGSGCIAALD 313 (322)
T ss_pred ccceeeccccchHHHHHHHhhhccchhhhhh
Confidence 9999999999843 33455555555555543
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=253.55 Aligned_cols=281 Identities=19% Similarity=0.209 Sum_probs=188.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccc-cchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
...+||+||||||||++||..|++.|++|+|||+++.+||+...... ++ +.
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~---------------------g~------- 212 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETID---------------------GK------- 212 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccC---------------------Cc-------
Confidence 34689999999999999999999999999999999899997643210 00 00
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeE-EEEecCCEEE--EE-c--------c---CCceEEEEeCeEEEc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGY-GKFISPSEVS--VD-T--------I---EGGNTVVKGKNIIIA 183 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~d~~~~~--v~-~--------~---~g~~~~~~~d~lvlA 183 (507)
+.. .+.....+.+... +++++.++ +..+..+... +. . . ......+.||+||||
T Consensus 213 ~~~-----------~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILA 281 (985)
T TIGR01372 213 PAA-----------DWAAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLA 281 (985)
T ss_pred cHH-----------HHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEc
Confidence 000 0101112223333 57777653 3333322111 10 0 0 011236899999999
Q ss_pred cCCCCCCC--CCCccCCceEecchhhccc----c-CCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCccCCCCCH
Q 010573 184 TGSDVKSL--PGITIDEKRIVSSTGALAL----N-EVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPSMDG 255 (507)
Q Consensus 184 tG~~p~~~--pg~~~~~~~~~~~~~~~~~----~-~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~~d~ 255 (507)
||+.+..+ ||.. ...+++......+ . ..+++++|+|+|++++|+|..|.+.|. .|+++++.+.+
T Consensus 282 TGa~~r~~pipG~~--~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------ 353 (985)
T TIGR01372 282 TGAHERPLVFANND--RPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------ 353 (985)
T ss_pred CCCCCcCCCCCCCC--CCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch------
Confidence 99988544 4543 3445554333221 1 237999999999999999999999995 57888766532
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccC--ceecCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG--VETDKM 333 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g--l~~~~~ 333 (507)
...+.+.+++.||++++++.++++..++....+++.. .+++++++++|.|+++.|++|++++ +..++ +..++.
T Consensus 354 --~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L--~~~lg~~~~~~~~ 428 (985)
T TIGR01372 354 --SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR-NGGAGQRLEADALAVSGGWTPVVHL--FSQRGGKLAWDAA 428 (985)
T ss_pred --hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe-cCCceEEEECCEEEEcCCcCchhHH--HHhcCCCeeeccc
Confidence 3345677889999999999999997655433455542 1345678999999999999999986 34444 333322
Q ss_pred CCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 334 GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 334 G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
..-.+ -.|++|+||+|||+++.. ....|..+|+.||..++
T Consensus 429 ~~~~~---~~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 429 IAAFL---PGDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred cCcee---cCCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 11011 137899999999998665 56669999999998885
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=243.09 Aligned_cols=280 Identities=27% Similarity=0.361 Sum_probs=193.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
....+|+|||+||+|+++|..|++.|++|+++|+.+.+||...+ .+|...+..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~~~~~------------------------- 187 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY--GIPAYRLPR------------------------- 187 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCccCCH-------------------------
Confidence 34578999999999999999999999999999999999986432 133211100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC---CCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~---~~pg~~~~ 197 (507)
. +.....+.+.+.++++..+.....+. ... . ....||.|++|||+.+. .+++...
T Consensus 188 --~-----------~~~~~l~~~~~~Gv~~~~~~~~~~~~---~~~--~---~~~~~D~Vi~AtG~~~~~~~~i~g~~~- 245 (564)
T PRK12771 188 --E-----------VLDAEIQRILDLGVEVRLGVRVGEDI---TLE--Q---LEGEFDAVFVAIGAQLGKRLPIPGEDA- 245 (564)
T ss_pred --H-----------HHHHHHHHHHHCCCEEEeCCEECCcC---CHH--H---HHhhCCEEEEeeCCCCCCcCCCCCCcc-
Confidence 0 00111234456788776654321110 000 0 11258999999998753 3444322
Q ss_pred CceEecchhhcc------ccCCCCeEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCcc-CCCCCHHHHHHHHHHHHhcC
Q 010573 198 EKRIVSSTGALA------LNEVPKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQK 269 (507)
Q Consensus 198 ~~~~~~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~-~~~~d~~~~~~~~~~l~~~G 269 (507)
..+++..+++. ....+++++|+|+|.++++.+..+.+++ .+|+++.+.+.. ++..+.++. ...+.|
T Consensus 246 -~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~-----~a~~~G 319 (564)
T PRK12771 246 -AGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIE-----EALREG 319 (564)
T ss_pred -CCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHH-----HHHHcC
Confidence 22332222211 1234799999999999999999999998 679999887643 444333322 234679
Q ss_pred cEEEcCceEEEEEEcCCeE-EEE---Eee---cC-------CCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCC
Q 010573 270 MKFMLKTKVVGVDLSGDGV-KLT---LEP---AA-------GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335 (507)
Q Consensus 270 v~i~~~~~v~~i~~~~~~v-~v~---~~~---~~-------~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~ 335 (507)
|++++++.+.++..++++. .++ +.. .. .++..++++|.||+|+|..|+..++. +..++. +++|+
T Consensus 320 Vki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~-~~~gl~-~~~G~ 397 (564)
T PRK12771 320 VEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE-SVPGVE-VGRGV 397 (564)
T ss_pred CEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh-hccCcc-cCCCC
Confidence 9999999999997654432 222 111 01 33456899999999999999987642 235677 77899
Q ss_pred eecCC-CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 336 IPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 336 i~Vd~-~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
|.||+ +++|+.|+|||+||++.++.++..|+.+|+.||.+|.
T Consensus 398 i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 398 VQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred EEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 99998 6889999999999999888899999999999999984
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=222.46 Aligned_cols=324 Identities=20% Similarity=0.223 Sum_probs=227.3
Q ss_pred hCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCC-------ceEecchhhccccC---C
Q 010573 145 KNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE-------KRIVSSTGALALNE---V 213 (507)
Q Consensus 145 ~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~-------~~~~~~~~~~~~~~---~ 213 (507)
.-||-++.| .+..+|.+...|.++|| .+|.||+++||||.+|..++-++... ..+.+..|+.+++. .
T Consensus 269 nGGvAvl~G~kvvkid~~d~~V~LnDG--~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~ae 346 (659)
T KOG1346|consen 269 NGGVAVLRGRKVVKIDEEDKKVILNDG--TTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAE 346 (659)
T ss_pred cCceEEEeccceEEeecccCeEEecCC--cEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhh
Confidence 458999999 57889999999999999 89999999999999997665443221 14556777776653 3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhc----CCeeEEEcccCccC-CCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV 288 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~~-~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v 288 (507)
.++|.|||+|++|-|+|..|.+. |.+|+.+......+ .-+++.++++-.+.+++.||.++.+..|..+......+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl 426 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNL 426 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccce
Confidence 58999999999999999998764 67887664433333 34567788888999999999999999999998888888
Q ss_pred EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCC-CCeecCCCCCCCCCCeEEecCCCCCC--------
Q 010573 289 KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM-GRIPVNERFATNIPGVYAIGDVIPGP-------- 359 (507)
Q Consensus 289 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~-G~i~Vd~~~~t~~~~IyA~GD~a~~~-------- 359 (507)
.+.+. +|.++..|+|++|+|-.||+++ .+..|+++|++ |++.||..++.. .|||++||++...
T Consensus 427 ~lkL~-----dG~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGrRR 498 (659)
T KOG1346|consen 427 VLKLS-----DGSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGRRR 498 (659)
T ss_pred EEEec-----CCCeeeeeeEEEEecCCCchhh--cccccceeecccCcEEeeheeecc-cceeeecchhhhhccccccee
Confidence 88886 7789999999999999999997 67788999875 889999999964 8999999999422
Q ss_pred -CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEc-CCCee--eecCCHHHHHHcCC-------------------CEE
Q 010573 360 -MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT-HPEVA--SVGKTEEQVKELGV-------------------EYR 416 (507)
Q Consensus 360 -~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~-~~~~~--~vG~~~~~~~~~~~-------------------~~~ 416 (507)
..+..|.-.||.|++||.|...++... ..+++. .|++. .+|+-+..+..-|+ ++.
T Consensus 499 VehhdhavvSGRLAGENMtgAakpy~hq--smFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sdt~v~ 576 (659)
T KOG1346|consen 499 VEHHDHAVVSGRLAGENMTGAAKPYKHQ--SMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSESSDTDVP 576 (659)
T ss_pred ccccccceeeceecccccccccCCcccc--ceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhhccCCCCc
Confidence 245678899999999998765432222 122221 13332 23333332221111 110
Q ss_pred EEEEecCcccc--------hhhc-C-CcceEEE-EEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcC
Q 010573 417 VGKFPFLANSR--------AKAI-D-DAEGIVK-ILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARV 482 (507)
Q Consensus 417 ~~~~~~~~~~~--------~~~~-~-~~~~~~k-~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~ 482 (507)
.....-+.... .... + +...|-| +||..+++.|+|..++.- -..|......|+.+...+||.+.
T Consensus 577 ~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~--Fnr~~~AR~II~d~kk~ddlnEv 651 (659)
T KOG1346|consen 577 ETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNL--FNRIGLARTIINDNKKYDDLNEV 651 (659)
T ss_pred cccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhh--hccchhhHHHhccccchhhHHHH
Confidence 00000000000 0000 1 1111222 444557999999988765 23567788899999999998764
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=218.72 Aligned_cols=313 Identities=16% Similarity=0.197 Sum_probs=190.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccch--------hhhhhhhHHHHHHHhhhhhCCc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPS--------KALLHSSHMYHEAMHSFASHGV 112 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~~~g~ 112 (507)
...++|+|||||+|||+||.+|++.|++|+++|+++.+||.|.+....+. .... ....|..+.....+.-+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~-~s~~Y~~L~tn~p~~~m 86 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIV-HSSVYESLRTNLPRECM 86 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCccc-chhhhhhhhccCCHhhc
Confidence 34579999999999999999999999999999999999999987543221 1000 01122222211111111
Q ss_pred ccCccccC--------hHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEEEec--CCEEEEEccCC--ceEEEEe
Q 010573 113 KFSSVEVD--------LPAMMAQKDKAVSNLTRGIEGLFKKNKVT--YVKG-YGKFIS--PSEVSVDTIEG--GNTVVKG 177 (507)
Q Consensus 113 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~d--~~~~~v~~~~g--~~~~~~~ 177 (507)
.+.+.... ....++. ...+.++++.+.+..++. +..+ ++..++ ...+.|.+.++ ...+..|
T Consensus 87 ~f~dfp~~~~~~~~~~~~~~fp~----~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~ 162 (461)
T PLN02172 87 GYRDFPFVPRFDDESRDSRRYPS----HREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIF 162 (461)
T ss_pred cCCCCCCCcccccccCcCCCCCC----HHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEc
Confidence 11110000 0001111 133445566667777776 4443 455554 34566665433 2345789
Q ss_pred CeEEEccC--CCCC--CCCCCc-cCCceEecchhhccc-cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC
Q 010573 178 KNIIIATG--SDVK--SLPGIT-IDEKRIVSSTGALAL-NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP 251 (507)
Q Consensus 178 d~lvlAtG--~~p~--~~pg~~-~~~~~~~~~~~~~~~-~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~ 251 (507)
|+||+||| +.|. .+||.. ..+..+++ .+.... ...+|+|+|||+|.+|+|+|..|.+.+.+|+++.|......
T Consensus 163 d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs-~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~ 241 (461)
T PLN02172 163 DAVVVCNGHYTEPNVAHIPGIKSWPGKQIHS-HNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT 241 (461)
T ss_pred CEEEEeccCCCCCcCCCCCCcccCCceEEEe-cccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc
Confidence 99999999 5663 456664 33333333 333222 23589999999999999999999999999999998764311
Q ss_pred CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccC-cee
Q 010573 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG-VET 330 (507)
Q Consensus 252 ~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g-l~~ 330 (507)
. ..+......+..+..|..+.. ++. +.+. +++.+++|.||+|||++|+.++| +..+ +..
T Consensus 242 ---------~-~~~~~~~~~v~~~~~I~~~~~-~g~--V~f~-----DG~~~~~D~Ii~~TGy~~~~pfL--~~~~~i~v 301 (461)
T PLN02172 242 ---------Y-EKLPVPQNNLWMHSEIDTAHE-DGS--IVFK-----NGKVVYADTIVHCTGYKYHFPFL--ETNGYMRI 301 (461)
T ss_pred ---------c-ccCcCCCCceEECCcccceec-CCe--EEEC-----CCCCccCCEEEECCcCCcccccc--Ccccceee
Confidence 0 011112334455666766643 233 5554 55678999999999999999984 3322 223
Q ss_pred cCCCCeecCCC-CCCC-CCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 331 DKMGRIPVNER-FATN-IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 331 ~~~G~i~Vd~~-~~t~-~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
+++.-..+-.+ +-.. .|+++.+|=..... ....+..|++.+|..+.|..
T Consensus 302 ~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~-~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 302 DENRVEPLYKHVFPPALAPGLSFIGLPAMGI-QFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred CCCcchhhHHhhcCCCCCCcEEEEecccccc-CchhHHHHHHHHHHHHcCCC
Confidence 22110011111 1123 48999999664332 34678899999999998763
|
|
| >PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=173.57 Aligned_cols=110 Identities=49% Similarity=0.767 Sum_probs=105.6
Q ss_pred ccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHH
Q 010573 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAV 467 (507)
Q Consensus 388 ~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~ 467 (507)
+|+++|++|++++||+||++|++.++++++.+.++....++.+.+++++|+|+++|+++++|||+|++|+++.|+|+.++
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~ 80 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELA 80 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 468 LAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 468 ~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
.+|++++|++++.+.+++|||++|++.++|
T Consensus 81 ~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 81 LAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp HHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred HHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 999999999999999999999999999886
|
; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B .... |
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=201.36 Aligned_cols=286 Identities=24% Similarity=0.286 Sum_probs=199.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
...+|.|||+||||++||..|++.|++|+++|+.+..||...+. ||...+.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG--IP~~kl~--------------------------- 172 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG--IPDFKLP--------------------------- 172 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEec--Cchhhcc---------------------------
Confidence 34799999999999999999999999999999999999964432 4432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC---CCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---SLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~---~~pg~~~~~ 198 (507)
.++.+...+.+++.|++|+.+...-.+ ++.+. ..-.||.+++|||+.-+ .+|+.+ .
T Consensus 173 -----------k~i~d~~i~~l~~~Gv~~~~~~~vG~~-----it~~~---L~~e~Dav~l~~G~~~~~~l~i~g~d--~ 231 (457)
T COG0493 173 -----------KDILDRRLELLERSGVEFKLNVRVGRD-----ITLEE---LLKEYDAVFLATGAGKPRPLDIPGED--A 231 (457)
T ss_pred -----------chHHHHHHHHHHHcCeEEEEcceECCc-----CCHHH---HHHhhCEEEEeccccCCCCCCCCCcC--C
Confidence 111222245677778888877543221 11111 22356999999997543 455543 3
Q ss_pred ceEecchhhcc------cc---------CCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCcc--CCCCCHHHHHH
Q 010573 199 KRIVSSTGALA------LN---------EVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI--VPSMDGEIRKQ 260 (507)
Q Consensus 199 ~~~~~~~~~~~------~~---------~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~--~~~~d~~~~~~ 260 (507)
..++...+++. +. ..+++++|||+|.++++++....+.|. +|+.+.+...- ...++......
T Consensus 232 ~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~ 311 (457)
T COG0493 232 KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQL 311 (457)
T ss_pred CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhh
Confidence 34554444331 11 123999999999999999999999997 67777532221 12222223444
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcCC-eEE-EEEe---ec-------------CCCceEEEEcCEEEEeecCCCCCCCCC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLE---PA-------------AGGEKTILEADVVLVSAGRTPFTAGLG 322 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~-v~~~---~~-------------~~g~~~~i~~D~vi~a~G~~p~~~~l~ 322 (507)
..+....+|++..+.....++..+++ .+. +.+. .. ..|+...+++|.|+.++|+.|+.....
T Consensus 312 ~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~ 391 (457)
T COG0493 312 EVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGL 391 (457)
T ss_pred hhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCccccc
Confidence 55666778999998888888877543 333 2221 11 024557899999999999999865432
Q ss_pred CcccCceecCCCCeecCCCC-CCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 323 LDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 323 ~~~~gl~~~~~G~i~Vd~~~-~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
....++..+..|.+.+|+.+ +|+.|++||.||+..+..+...|+.+|+.+|+.|-
T Consensus 392 ~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 392 LLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred ccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 23336788889999999998 89999999999999888899999999999998774
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=202.11 Aligned_cols=309 Identities=19% Similarity=0.223 Sum_probs=155.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccc--------cchhhhhhhhHHHHHHHhhhhhCCcccC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC--------IPSKALLHSSHMYHEAMHSFASHGVKFS 115 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 115 (507)
.+|+|||||++||++|..|.+.|++++++|+++.+||.|.+... +++-....+.. ...+..+.++.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~-----~~~fsdfp~p~~ 76 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKE-----MMAFSDFPFPED 76 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GG-----GSCCTTS-HCCC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCch-----HhcCCCcCCCCC
Confidence 47999999999999999999999999999999999999975321 11110000000 000111211111
Q ss_pred ccc-cChHHHHHHHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEE---EecC----CEEEEEcc-CCceEEEEeCeEEEc
Q 010573 116 SVE-VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVT--YVKG-YGK---FISP----SEVSVDTI-EGGNTVVKGKNIIIA 183 (507)
Q Consensus 116 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~---~~d~----~~~~v~~~-~g~~~~~~~d~lvlA 183 (507)
... ... .++.++++...+..++. +..+ ++. ..+. ..+.|.+. +|+..+..||+||+|
T Consensus 77 ~p~f~~~-----------~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~Vvva 145 (531)
T PF00743_consen 77 YPDFPSH-----------SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVA 145 (531)
T ss_dssp CSSSEBH-----------HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEE
T ss_pred CCCCCCH-----------HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEc
Confidence 111 111 12223333334433332 2222 222 2221 35666654 454566789999999
Q ss_pred cCCC--CC----CCCCCccCCceEecchhhcccc-CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCCCC-
Q 010573 184 TGSD--VK----SLPGITIDEKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMD- 254 (507)
Q Consensus 184 tG~~--p~----~~pg~~~~~~~~~~~~~~~~~~-~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~d- 254 (507)
||.. |. .+||++.....++++.+..... ..+|+|+|||+|.+|+|+|..+++...+|++..|+..+ ++...
T Consensus 146 tG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~ 225 (531)
T PF00743_consen 146 TGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWD 225 (531)
T ss_dssp E-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-----------
T ss_pred CCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccc
Confidence 9953 42 2577663334566666655433 45899999999999999999999999999999887665 33211
Q ss_pred ----------------------HHHHHHH-HHHHHh------cCcEEE------------------------cCceEEEE
Q 010573 255 ----------------------GEIRKQF-QRSLEK------QKMKFM------------------------LKTKVVGV 281 (507)
Q Consensus 255 ----------------------~~~~~~~-~~~l~~------~Gv~i~------------------------~~~~v~~i 281 (507)
..+.+.+ .+.+.+ .|..-. ....|.++
T Consensus 226 ~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~ 305 (531)
T PF00743_consen 226 NGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRF 305 (531)
T ss_dssp -------------------------------------------------------------------------EE-EEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0011111 011100 011000 00111122
Q ss_pred EEcCCeEEEEEeecCCCceEEE-EcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCC---CCCCCeEEecCCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA---TNIPGVYAIGDVIP 357 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i-~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~---t~~~~IyA~GD~a~ 357 (507)
++++ +.++ +++++ ++|.||+|||++...++|. +.-+...+ +.+..-.++= -..|++..+|=+..
T Consensus 306 --~~~~--v~F~-----DGs~~e~vD~II~~TGY~~~fpFL~--~~~~~~~~-~~~~LYk~vfp~~~~~ptLafIG~~~~ 373 (531)
T PF00743_consen 306 --TENS--VIFE-----DGSTEEDVDVIIFCTGYKFSFPFLD--ESLIKVDD-NRVRLYKHVFPPNLDHPTLAFIGLVQP 373 (531)
T ss_dssp ---SSE--EEET-----TSEEEEE-SEEEE---EE---TTB---TTTT-S-S-SSSSEETTTEETETTSTTEEESS-SBS
T ss_pred --cccc--cccc-----ccccccccccccccccccccccccc--cccccccc-ccccccccccccccccccccccccccc
Confidence 1122 2233 55664 6999999999999988853 32233222 3333333321 23589999998753
Q ss_pred CCCcHhHHHHHHHHHHHHHcCCC
Q 010573 358 GPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
.......+..|++.+|+-+.|..
T Consensus 374 ~g~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 374 FGSIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp SS-HHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccccccccccccccccccc
Confidence 32345678999999999998763
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=190.52 Aligned_cols=287 Identities=14% Similarity=0.146 Sum_probs=168.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhh---hCCcccCc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA---SHGVKFSS 116 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~g~~~~~ 116 (507)
..+.++|+||||||||++||++|++.|++|+|+|+.+..|+..... +.+ ...+.+.++..+.. -.|+....
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~-----~~i-~~~~~~~~~L~er~p~~~GG~~~yG 453 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVH-----KPI-KFWHEYKNLLSERMPRGFGGVAEYG 453 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccc-----ccc-chhhhhccchhhhccccCCcccccC
Confidence 3467899999999999999999999999999999966555432110 000 11112222221111 11222222
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCC-CCC--CCC
Q 010573 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS-DVK--SLP 192 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~-~p~--~~p 192 (507)
..+.|.+- .+ ..+...++. .++.++.+..... .++.++ .....||+|+||||+ .|+ .+|
T Consensus 454 Ip~R~~k~------~l----~~i~~il~~g~~v~~~~gv~lG~-----dit~ed--l~~~gyDAV~IATGA~kpr~L~IP 516 (1028)
T PRK06567 454 ITVRWDKN------NL----DILRLILERNNNFKYYDGVALDF-----NITKEQ--AFDLGFDHIAFCIGAGQPKVLDIE 516 (1028)
T ss_pred ccccchHH------HH----HHHHHHHhcCCceEEECCeEECc-----cCCHHH--HhhcCCCEEEEeCCCCCCCCCCCC
Confidence 22333211 11 111122222 2455554533111 111111 134579999999999 565 345
Q ss_pred CCccCCceEecchhhcccc--------------CCCCeEEEEcCcHHHHHHHHHHHh-----------------------
Q 010573 193 GITIDEKRIVSSTGALALN--------------EVPKKLVVIGAGYIGLEMGSVWAR----------------------- 235 (507)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~--------------~~~~~vvVvG~G~~g~e~A~~l~~----------------------- 235 (507)
|. +...+++..+++... ..+++|+|||||.+|+|+|....+
T Consensus 517 Ge--da~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~ 594 (1028)
T PRK06567 517 NF--EAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDK 594 (1028)
T ss_pred Cc--cCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccH
Confidence 53 356677777654321 135899999999999999984332
Q ss_pred ----------------------------cCCeeEEEcccCcc-CCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcC-
Q 010573 236 ----------------------------LGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG- 285 (507)
Q Consensus 236 ----------------------------~g~~Vtlv~~~~~~-~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~- 285 (507)
.| .|+++.|+..- +|...-+ .+.+... .+.||+++++....++..++
T Consensus 595 eia~~f~~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~~-~eEv~~A-~eEGV~f~~~~~P~~i~~d~~ 671 (1028)
T PRK06567 595 EIAEEFIAHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKLN-HEELIYA-LALGVDFKENMQPLRINVDKY 671 (1028)
T ss_pred HHHHHHHHHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCCCCC-HHHHHHH-HHcCcEEEecCCcEEEEecCC
Confidence 22 28888877654 5532100 1223333 35799999999999997654
Q ss_pred CeEE-EEEeecC-----------C-C-------------ceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecC
Q 010573 286 DGVK-LTLEPAA-----------G-G-------------EKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339 (507)
Q Consensus 286 ~~v~-v~~~~~~-----------~-g-------------~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd 339 (507)
+.+. +++.... + + ...+++||.||+|+|..||+... . .+
T Consensus 672 g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~--~-------------~~ 736 (1028)
T PRK06567 672 GHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD--E-------------DK 736 (1028)
T ss_pred CeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc--c-------------cc
Confidence 3333 4443211 1 1 33679999999999999999852 0 01
Q ss_pred CCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 340 ERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 340 ~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
..+-++.+++|+- .+..|+.+|+.++.+|.
T Consensus 737 ~s~~~d~~~~f~G--------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 737 YSYFGDCNPKYSG--------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred cccccCCCCcccc--------HHHHHHHHHHhHHHHHH
Confidence 1222455667765 67889999999999983
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=193.43 Aligned_cols=280 Identities=22% Similarity=0.301 Sum_probs=175.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+-++|.|||+||||++||-+|-+.|+.|+++||.++.||...+ .+|.. .+|
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y--gipnm--------------------------kld- 1834 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY--GIPNM--------------------------KLD- 1834 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee--cCCcc--------------------------chh-
Confidence 4579999999999999999999999999999999999995322 12211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CCCCCCCccCCce
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKSLPGITIDEKR 200 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~~~pg~~~~~~~ 200 (507)
+. +.+.--+++.+.||+|+.+...-.+ +.++ + ..-.+|.+|+|+|+. |+.+|....+...
T Consensus 1835 -k~----------vv~rrv~ll~~egi~f~tn~eigk~-----vs~d-~--l~~~~daiv~a~gst~prdlpv~grd~kg 1895 (2142)
T KOG0399|consen 1835 -KF----------VVQRRVDLLEQEGIRFVTNTEIGKH-----VSLD-E--LKKENDAIVLATGSTTPRDLPVPGRDLKG 1895 (2142)
T ss_pred -HH----------HHHHHHHHHHhhCceEEeecccccc-----ccHH-H--HhhccCeEEEEeCCCCCcCCCCCCccccc
Confidence 00 1111135667789998876533211 2221 1 334689999999986 4444433222322
Q ss_pred Eecchh---------------hccccCCCCeEEEEcCcHHHHHHHHHHHhcCCe-eEEEcccCc---------cCCCCCH
Q 010573 201 IVSSTG---------------ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAAD---------IVPSMDG 255 (507)
Q Consensus 201 ~~~~~~---------------~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~---------~~~~~d~ 255 (507)
++-..+ ...+...+|+|+|||||.+|-++...-.|+|++ |.-++--|+ ++|.++.
T Consensus 1896 v~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwpr 1975 (2142)
T KOG0399|consen 1896 VHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPR 1975 (2142)
T ss_pred cHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCce
Confidence 222111 122334589999999999999999999999975 332322221 1232221
Q ss_pred ----HH-HHHHHHHHHhcCcEEEcC------------ceEE-----EE--EEcCCeEE--EEEeecCCCceEEEEcCEEE
Q 010573 256 ----EI-RKQFQRSLEKQKMKFMLK------------TKVV-----GV--DLSGDGVK--LTLEPAAGGEKTILEADVVL 309 (507)
Q Consensus 256 ----~~-~~~~~~~l~~~Gv~i~~~------------~~v~-----~i--~~~~~~v~--v~~~~~~~g~~~~i~~D~vi 309 (507)
+. .+.+.+. .|-..++. ..|+ ++ +.++.+.. .++ .++.+.++||+|+
T Consensus 1976 vfrvdygh~e~~~~---~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei----~~see~~eadlv~ 2048 (2142)
T KOG0399|consen 1976 VFRVDYGHAEAKEH---YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEI----NNSEEIIEADLVI 2048 (2142)
T ss_pred EEEeecchHHHHHH---hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEc----CCcceeeecceee
Confidence 00 0111111 12111111 1111 11 11222211 111 2356789999999
Q ss_pred EeecCCCCCCCCCCcccCceecCCCCeec-CCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 310 VSAGRTPFTAGLGLDKIGVETDKMGRIPV-NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 310 ~a~G~~p~~~~l~~~~~gl~~~~~G~i~V-d~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
+|.|+...-... .++.+++.|.++.|.. ++.+.|+++++||+|||-.+..+..+|+++||.+|+.+-
T Consensus 2049 lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2049 LAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred eeccccCcchhh-hhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHHH
Confidence 999988655443 6778899999888875 455889999999999999888899999999999998763
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=159.76 Aligned_cols=264 Identities=21% Similarity=0.259 Sum_probs=165.7
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+.+|||||+||.+||.+|+.+ ..+|+|+...+. ..+...|......++++.+... +-.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~----------------vksvtn~~~i~~ylekfdv~eq----~~~ 60 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF----------------VKSVTNYQKIGQYLEKFDVKEQ----NCH 60 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH----------------HHHHhhHHHHHHHHHhcCcccc----chh
Confidence 368999999999999999987 468999977321 1344455556666666655432 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC-CCCCCccCCceE
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK-SLPGITIDEKRI 201 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~-~~pg~~~~~~~~ 201 (507)
.+.+...+++++ +..++.....+.+++| ..+.|++|+++||++|. ...+. ...+
T Consensus 61 elg~~f~~~~~~--------------------v~~~~s~ehci~t~~g--~~~ky~kKOG~tg~kPklq~E~~---n~~I 115 (334)
T KOG2755|consen 61 ELGPDFRRFLND--------------------VVTWDSSEHCIHTQNG--EKLKYFKLCLCTGYKPKLQVEGI---NPKI 115 (334)
T ss_pred hhcccHHHHHHh--------------------hhhhccccceEEecCC--ceeeEEEEEEecCCCcceeecCC---CceE
Confidence 333332222211 1123445566777888 88999999999999995 33432 2223
Q ss_pred e---cchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-CCCCHHHHHHHHHHHHhc------
Q 010573 202 V---SSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQ------ 268 (507)
Q Consensus 202 ~---~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~~~d~~~~~~~~~~l~~~------ 268 (507)
. ..+....+. ...|.|.|+|.|-+++|++..+. +..|+|....+.+. ..+||.+...+...|+..
T Consensus 116 v~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~i 193 (334)
T KOG2755|consen 116 VGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRII 193 (334)
T ss_pred EEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchh
Confidence 3 233332222 34899999999999999998885 45788887777763 366777776666555211
Q ss_pred ------CcEEEcCce-----------------EEE------------------EEEcCCeEEEEEeecCCCceEEEEcCE
Q 010573 269 ------KMKFMLKTK-----------------VVG------------------VDLSGDGVKLTLEPAAGGEKTILEADV 307 (507)
Q Consensus 269 ------Gv~i~~~~~-----------------v~~------------------i~~~~~~v~v~~~~~~~g~~~~i~~D~ 307 (507)
.++.+.++. ... +....+...++..+...+....+.+|.
T Consensus 194 aiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ 273 (334)
T KOG2755|consen 194 AIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDF 273 (334)
T ss_pred hhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeE
Confidence 111111100 000 000000001111111122334677999
Q ss_pred EEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 308 VLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 308 vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
++.|+|..||+++. -...+...++|+++||+.|+|+.|++||+||++.
T Consensus 274 ivSatgvtpn~e~~--~~~~lq~~edggikvdd~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 274 IVSATGVTPNSEWA--MNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCT 321 (334)
T ss_pred EEeccccCcCceEE--ecChhhhccccCeeehhhccccccceeeecceec
Confidence 99999999999953 3334777788999999999999999999999984
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=174.58 Aligned_cols=267 Identities=21% Similarity=0.278 Sum_probs=137.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCCC---ceec-----cccccchhhhhhhhHHHHHHHhhhhhCCcc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALG---GTCL-----NVGCIPSKALLHSSHMYHEAMHSFASHGVK 113 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~G---G~~~-----~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 113 (507)
.||+++||.||++|+.|..|.+.+ .++..+|+++.+. |+.+ ....+-...-+..+.....+.+++...+-.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 489999999999999999999885 8999999876542 2211 111100000001111111122222222211
Q ss_pred cCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec---C---CEEEEEc--cCCceEEEEeCeEEEcc
Q 010573 114 FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS---P---SEVSVDT--IEGGNTVVKGKNIIIAT 184 (507)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d---~---~~~~v~~--~~g~~~~~~~d~lvlAt 184 (507)
..- ++.. ........+.+++....++..-.+..+ ++..+. . ..+.|.+ .+|+...+.++.|||||
T Consensus 82 ~~f--~~~~----~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~ 155 (341)
T PF13434_consen 82 YEF--YNRG----YFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLAT 155 (341)
T ss_dssp HHH--HHH------SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE--
T ss_pred hhh--hhcC----CCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECc
Confidence 000 0000 000001122222222233333223333 344332 1 1356655 34556899999999999
Q ss_pred CCCCCCCCCCc-cC-CceEecchhhccc---cCCCCeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCccCCC-----
Q 010573 185 GSDVKSLPGIT-ID-EKRIVSSTGALAL---NEVPKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPS----- 252 (507)
Q Consensus 185 G~~p~~~pg~~-~~-~~~~~~~~~~~~~---~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~----- 252 (507)
|..|..|+... .. ...++++.+.... ...+++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+.
T Consensus 156 G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f 235 (341)
T PF13434_consen 156 GGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF 235 (341)
T ss_dssp --EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred CCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence 98886554444 22 2567766665543 3458999999999999999999998875 89999998876432
Q ss_pred ----CCHH-------------------------------HHHHHHH-----HH-HhcCcEEEcCceEEEEEEcC-CeEEE
Q 010573 253 ----MDGE-------------------------------IRKQFQR-----SL-EKQKMKFMLKTKVVGVDLSG-DGVKL 290 (507)
Q Consensus 253 ----~d~~-------------------------------~~~~~~~-----~l-~~~Gv~i~~~~~v~~i~~~~-~~v~v 290 (507)
++|+ +.+.+-+ .+ .+..+.++.+++|+.++..+ +++.+
T Consensus 236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l 315 (341)
T PF13434_consen 236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRL 315 (341)
T ss_dssp HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEE
T ss_pred hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEE
Confidence 2222 1111111 11 23357899999999998887 48999
Q ss_pred EEeecCCCceEEEEcCEEEEeecCC
Q 010573 291 TLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 291 ~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
++.+...+...++++|.||+|||++
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---EE
T ss_pred EEEECCCCCeEEEecCEEEEcCCcc
Confidence 9988777788899999999999985
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-20 Score=166.26 Aligned_cols=187 Identities=35% Similarity=0.488 Sum_probs=120.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHHH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAM 124 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 124 (507)
||+||||||||++||.+|++.+.+|+|+|+.+.. +....|++...+............ .
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~----------------- 59 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGT---PYNSGCIPSPLLVEIAPHRHEFLP-A----------------- 59 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHH---HHHHSHHHHHHHHHHHHHHHHHHH-H-----------------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccc---cccccccccccccccccccccccc-c-----------------
Confidence 7999999999999999999999999999874321 222233333222111111110000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEE-eEEEEecCCEE-------EEE-ccCCceEEEEeCeEEEccCCCCC--CCCC
Q 010573 125 MAQKDKAVSNLTRGIEGLFKKNKVTYVK-GYGKFISPSEV-------SVD-TIEGGNTVVKGKNIIIATGSDVK--SLPG 193 (507)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~d~~~~-------~v~-~~~g~~~~~~~d~lvlAtG~~p~--~~pg 193 (507)
+ + ..+.+.+...++++.. ..+..++.... .+. ...++...+.||+||||||+.|. .+|+
T Consensus 60 --------~-~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g 129 (201)
T PF07992_consen 60 --------R-L-FKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG 129 (201)
T ss_dssp --------H-H-GHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred --------c-c-cccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence 0 0 0112233455777743 34444432222 221 12334589999999999999874 5676
Q ss_pred Cc--cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcE
Q 010573 194 IT--IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
.+ .....+.++.++......+++++|||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG-------------------------------------------------- 159 (201)
T PF07992_consen 130 EEVAYFLRGVDDAQRFLELLESPKRVAVVG-------------------------------------------------- 159 (201)
T ss_dssp TTTECBTTSEEHHHHHHTHSSTTSEEEEES--------------------------------------------------
T ss_pred Cccccccccccccccccccccccccccccc--------------------------------------------------
Confidence 52 22245667777777666677999999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
+..+. +..+++++++|++.||+++||+.|||||
T Consensus 160 ----------------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~~t~~~~Iya 192 (201)
T PF07992_consen 160 ----------------------------------------------TEFLA-EKLGVELDENGFIKVDENLQTSVPGIYA 192 (201)
T ss_dssp ----------------------------------------------TTTST-HHTTSTBTTTSSBEEBTTSBBSSTTEEE
T ss_pred ----------------------------------------------ccccc-cccccccccccccccccccccccccccc
Confidence 44432 7778999999999999999999999999
Q ss_pred ecCCCCCC
Q 010573 352 IGDVIPGP 359 (507)
Q Consensus 352 ~GD~a~~~ 359 (507)
+|||++.+
T Consensus 193 ~GD~a~~~ 200 (201)
T PF07992_consen 193 AGDCAGIY 200 (201)
T ss_dssp -GGGBEES
T ss_pred cccccccC
Confidence 99998643
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=157.51 Aligned_cols=329 Identities=19% Similarity=0.279 Sum_probs=201.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCCC---ceeccccc--cc---hhhhhhhhHHHHHHHhhhhhC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALG---GTCLNVGC--IP---SKALLHSSHMYHEAMHSFASH 110 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~G---G~~~~~~~--~p---~~~~~~~~~~~~~~~~~~~~~ 110 (507)
|+..+|++.||-||+.|+.|+.|.+.+ +++..+||.+.+. |+.+-... +| ...-+..+.....+.+++...
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 456799999999999999999999984 8899999977552 33211111 11 000111122222334444333
Q ss_pred CcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEE---EecCCE---EEEEccCCceEEEEeCeEEEc
Q 010573 111 GVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGK---FISPSE---VSVDTIEGGNTVVKGKNIIIA 183 (507)
Q Consensus 111 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~---~~d~~~---~~v~~~~g~~~~~~~d~lvlA 183 (507)
+--+.- +++.... ..+....++.+|....+.. +..+ .+. .++.+. ..+.+.++ ..+.++.|||+
T Consensus 82 ~RLy~F--l~~e~f~-i~R~Ey~dY~~Waa~~l~~----~rfg~~V~~i~~~~~d~~~~~~~~t~~~--~~y~ar~lVlg 152 (436)
T COG3486 82 GRLYEF--LNYETFH-IPRREYNDYCQWAASQLPS----LRFGEEVTDISSLDGDAVVRLFVVTANG--TVYRARNLVLG 152 (436)
T ss_pred chHhhh--hhhhccc-ccHHHHHHHHHHHHhhCCc----cccCCeeccccccCCcceeEEEEEcCCC--cEEEeeeEEEc
Confidence 311110 0111100 1111123333333333321 1222 222 233322 22445555 58999999999
Q ss_pred cCCCCCCCCCCc-cCCceEecchhhcccc-C-C-CCeEEEEcCcHHHHHHHHHHHhc----CCeeEEEcccCccCCC---
Q 010573 184 TGSDVKSLPGIT-IDEKRIVSSTGALALN-E-V-PKKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIVPS--- 252 (507)
Q Consensus 184 tG~~p~~~pg~~-~~~~~~~~~~~~~~~~-~-~-~~~vvVvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~~~~--- 252 (507)
+|.+|..+|... ..+..++++.+..... + . .++|.|||+|.+|.|+...|... ..++.|+.|+..++|.
T Consensus 153 ~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~S 232 (436)
T COG3486 153 VGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYS 232 (436)
T ss_pred cCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccc
Confidence 999998777654 4455677776665432 2 1 34599999999999999888643 3468899999887642
Q ss_pred ------CCHHHH------------------------------HHH-----HHHHH--hcCcEEEcCceEEEEEEcCCe-E
Q 010573 253 ------MDGEIR------------------------------KQF-----QRSLE--KQKMKFMLKTKVVGVDLSGDG-V 288 (507)
Q Consensus 253 ------~d~~~~------------------------------~~~-----~~~l~--~~Gv~i~~~~~v~~i~~~~~~-v 288 (507)
+.|+.. ..+ ++.+. +..+.++.++.++.++..+++ +
T Consensus 233 kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~ 312 (436)
T COG3486 233 KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY 312 (436)
T ss_pred hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE
Confidence 222111 111 11111 246889999999999988876 8
Q ss_pred EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCccc--CceecCCCCeecCCCCCC--CC---CCeEEecCCC-----
Q 010573 289 KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI--GVETDKMGRIPVNERFAT--NI---PGVYAIGDVI----- 356 (507)
Q Consensus 289 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~--gl~~~~~G~i~Vd~~~~t--~~---~~IyA~GD~a----- 356 (507)
.+.+....+++.+++++|.||+|||++...+.+ ++.+ .+..+++|...|++.++. .- -.||+.|-+.
T Consensus 313 ~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~f-L~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGi 391 (436)
T COG3486 313 RLTLRHHETGELETVETDAVILATGYRRAVPSF-LEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGI 391 (436)
T ss_pred EEEEeeccCCCceEEEeeEEEEecccccCCchh-hhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccccc
Confidence 888888778888999999999999999666532 3333 366788899999988652 11 2599999777
Q ss_pred CCCCcHhHHHHHHHHHHHHHcCC
Q 010573 357 PGPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 357 ~~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
+.|.+.-.|.+.+.++- .++|.
T Consensus 392 g~pdLsl~a~Raa~I~~-~L~g~ 413 (436)
T COG3486 392 GAPDLSLGAWRAAVILN-SLLGR 413 (436)
T ss_pred CCccchHHHHHHHHHHH-HHhCc
Confidence 34667777777766554 44444
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=157.87 Aligned_cols=188 Identities=18% Similarity=0.234 Sum_probs=106.9
Q ss_pred EEECCChHHHHHHHHHHHCCCc-EEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHHHH
Q 010573 47 VVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMM 125 (507)
Q Consensus 47 vIIG~G~aGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 125 (507)
+||||||+|+++|.+|++.|.+ ++|+|+++.+||.|......+......... ..++++ +-..+......
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~ 70 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFS---------SDFGLP-DFESFSFDDSP 70 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCT---------GGSS---CCCHSCHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCcccc---------ccccCC-cccccccccCC
Confidence 6999999999999999999999 999999999999987532111100000000 000000 00000011000
Q ss_pred HH----HHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCCceEEEEeCeEEEccCC--CCC--CCCCC
Q 010573 126 AQ----KDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGS--DVK--SLPGI 194 (507)
Q Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~--~p~--~~pg~ 194 (507)
.+ .....+.+.++++.+.++.++++..+. +..+ +.+.+.|.+.++ +++.+|+||+|||. .|. .+|+
T Consensus 71 ~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAtG~~~~p~~p~~~g- 147 (203)
T PF13738_consen 71 EWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLATGHYSHPRIPDIPG- 147 (203)
T ss_dssp HHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE---SSCSB---S-TT-
T ss_pred CCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEeeeccCCCCcccccc-
Confidence 00 000123344556667777777766543 3332 344588888887 78999999999996 442 2344
Q ss_pred ccCCceEecchhhccc-cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 195 TIDEKRIVSSTGALAL-NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
..+. ..+++.+.... ...+++|+|||+|.+|+|++..|.+.|.+|+++.|++.
T Consensus 148 ~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 148 SAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GGCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred cccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 1122 45555554433 33479999999999999999999999999999999875
|
... |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=173.75 Aligned_cols=193 Identities=21% Similarity=0.310 Sum_probs=123.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCc-EEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~-V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (507)
....+||+|||||++|+++|++|++.|.. ++|+||++..||+|.+. +.|+..+..+...+. +...........
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~-ry~~l~~~~p~~~~~-----~~~~p~~~~~~~ 78 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-RYPGLRLDSPKWLLG-----FPFLPFRWDEAF 78 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc-cCCceEECCchheec-----cCCCccCCcccC
Confidence 45578999999999999999999999988 99999999999997653 333332222211110 111111000000
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCc----EEEEeE--EEEe-cCCEEEEEccCCceEEEEeCeEEEccCC--CC-
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKV----TYVKGY--GKFI-SPSEVSVDTIEGGNTVVKGKNIIIATGS--DV- 188 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~--~~~~-d~~~~~v~~~~g~~~~~~~d~lvlAtG~--~p- 188 (507)
-.+.. +..++.+.++++++ .+.... +.+. +...++|.++++...++.+|+||+|||. .|
T Consensus 79 ~~~~~-----------~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~ 147 (443)
T COG2072 79 APFAE-----------IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY 147 (443)
T ss_pred CCccc-----------HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC
Confidence 11111 12222333444433 333321 2222 2346788877774434789999999994 44
Q ss_pred -CCCCCCcc-CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 189 -KSLPGITI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 189 -~~~pg~~~-~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
+.++|.+. .+..+++++........+|+|+|||+|.+|++++..|.+.|.+||++.|++..
T Consensus 148 iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 148 IPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 34566553 44445555544555566999999999999999999999999999999998875
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.5e-17 Score=160.85 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=121.1
Q ss_pred EEEEcCcHHHHHHH-HHHH----hcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEE
Q 010573 217 LVVIGAGYIGLEMG-SVWA----RLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT 291 (507)
Q Consensus 217 vvVvG~G~~g~e~A-~~l~----~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~ 291 (507)
=.|++.+.+|+|.+ ..+. ++|++|+++.+.+..++.. ++.+.+.+.+++.|++++.++.|++++.+++++...
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 37889999999998 6665 5799999999888877754 688889999999999999999999998777666544
Q ss_pred EeecCCCceEEEEcCEEEEeecCCCCCCCC---------------------------------CCcccCceecCCCCeec
Q 010573 292 LEPAAGGEKTILEADVVLVSAGRTPFTAGL---------------------------------GLDKIGVETDKMGRIPV 338 (507)
Q Consensus 292 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l---------------------------------~~~~~gl~~~~~G~i~V 338 (507)
.. .++....+.+|.||+|+|..+...+. .+...|+.+|++ ...+
T Consensus 296 ~~--~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~~p~ 372 (422)
T PRK05329 296 WT--RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-LRPL 372 (422)
T ss_pred Ee--eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-cCcc
Confidence 32 23344679999999999987554320 123446666653 4556
Q ss_pred CCCCCCCCCCeEEecCCCCCCCcH------hHHHHHHHHHHHHHcCC
Q 010573 339 NERFATNIPGVYAIGDVIPGPMLA------HKAEEDGVACVEFLAGK 379 (507)
Q Consensus 339 d~~~~t~~~~IyA~GD~a~~~~~~------~~A~~~g~~aa~~i~~~ 379 (507)
|...++..+||||||++.+++..+ ..|+..|..||++|...
T Consensus 373 ~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 373 DSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred cCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 777777899999999999887643 57888899999888643
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-17 Score=154.48 Aligned_cols=203 Identities=17% Similarity=0.240 Sum_probs=130.6
Q ss_pred CceEEEEeCeEEEccCCCCCCCCC---Cc-cCCceEecchhhcccc----------------CCCCeEEEE---cCcH--
Q 010573 170 GGNTVVKGKNIIIATGSDVKSLPG---IT-IDEKRIVSSTGALALN----------------EVPKKLVVI---GAGY-- 224 (507)
Q Consensus 170 g~~~~~~~d~lvlAtG~~p~~~pg---~~-~~~~~~~~~~~~~~~~----------------~~~~~vvVv---G~G~-- 224 (507)
++..++..-.+|+|||-.+..... ++ ....+++|..++.++. ..||+|+.| |+-.
T Consensus 294 ~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~ 373 (622)
T COG1148 294 PEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQ 373 (622)
T ss_pred CcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcc
Confidence 445678889999999988754321 11 1123455555554432 237888876 5433
Q ss_pred ------------HHHHHHHHHHhc--CCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEE
Q 010573 225 ------------IGLEMGSVWARL--GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290 (507)
Q Consensus 225 ------------~g~e~A~~l~~~--g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v 290 (507)
.++--|....+. ..+|++....-+ .+.....+.+.+.-++.||+++.+..-.-.+..++.+.|
T Consensus 374 ~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR---afG~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~~l~V 450 (622)
T COG1148 374 VGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR---AFGKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKKKLIV 450 (622)
T ss_pred cCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee---ccCccHHHHHHhhhhhhchhhhcCChHHheeCCCCeeEE
Confidence 112222333332 356777765433 333344455555556789999866433333445556677
Q ss_pred EEeecCCCceEEEEcCEEEEeecCCCCCCCCC-CcccCceecCCCCeecC-CCCC---CCCCCeEEecCCCCCCCcHhHH
Q 010573 291 TLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-LDKIGVETDKMGRIPVN-ERFA---TNIPGVYAIGDVIPGPMLAHKA 365 (507)
Q Consensus 291 ~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-~~~~gl~~~~~G~i~Vd-~~~~---t~~~~IyA~GD~a~~~~~~~~A 365 (507)
..++.-.+.-.++++|+|++++|..|....-. ...+|++.+++|+++.. +.++ |+.+|||.+|-+ .+|.-...+
T Consensus 451 ~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~a-qgPkdI~~s 529 (622)
T COG1148 451 RVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAA-QGPKDIADS 529 (622)
T ss_pred EEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecc-cCCccHHHH
Confidence 77776667778999999999999999654211 34568999999999876 5555 789999999977 466677778
Q ss_pred HHHHHHHHHHH
Q 010573 366 EEDGVACVEFL 376 (507)
Q Consensus 366 ~~~g~~aa~~i 376 (507)
+.||..||...
T Consensus 530 iaqa~aAA~kA 540 (622)
T COG1148 530 IAQAKAAAAKA 540 (622)
T ss_pred HHHhHHHHHHH
Confidence 88887776644
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-16 Score=153.69 Aligned_cols=266 Identities=16% Similarity=0.217 Sum_probs=152.4
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHH-HCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcc
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAA-QLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV 117 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~-~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 117 (507)
+.....+|+||||||||++||.+|. +.|++|+|+|+.+.+||...+ +..|.+.
T Consensus 35 ~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~-GVaPdh~------------------------- 88 (506)
T PTZ00188 35 NEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY-GVAPDHI------------------------- 88 (506)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE-eCCCCCc-------------------------
Confidence 3445678999999999999999865 569999999999999997442 2222110
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCC-----
Q 010573 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP----- 192 (507)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~p----- 192 (507)
. ...+...+...+...++++..+ +. +.. .+..++ ..-.||.||+|+|+.+..+|
T Consensus 89 --~-----------~k~v~~~f~~~~~~~~v~f~gn-v~-VG~---Dvt~ee---L~~~YDAVIlAtGA~~l~ipi~~~~ 147 (506)
T PTZ00188 89 --H-----------VKNTYKTFDPVFLSPNYRFFGN-VH-VGV---DLKMEE---LRNHYNCVIFCCGASEVSIPIGQQD 147 (506)
T ss_pred --c-----------HHHHHHHHHHHHhhCCeEEEee-eE-ecC---ccCHHH---HHhcCCEEEEEcCCCCCCCCccccc
Confidence 0 1112222333444566776622 11 111 111111 22379999999999987666
Q ss_pred -------CCccC--CceEecchhhccc-------------c------CCCCeEEEEcCcHHHHHHHHHHH----------
Q 010573 193 -------GITID--EKRIVSSTGALAL-------------N------EVPKKLVVIGAGYIGLEMGSVWA---------- 234 (507)
Q Consensus 193 -------g~~~~--~~~~~~~~~~~~~-------------~------~~~~~vvVvG~G~~g~e~A~~l~---------- 234 (507)
+.+.. ...+++..++..+ . ...++++|||.|.+++++|..|.
T Consensus 148 ~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TD 227 (506)
T PTZ00188 148 EDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTD 227 (506)
T ss_pred ceeeeccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCC
Confidence 43211 1233333332111 0 13478999999999999999753
Q ss_pred ----------hcCC-eeEEEcccCccCCCC------------------CH-H-----------------------HHHHH
Q 010573 235 ----------RLGS-EVTVVEFAADIVPSM------------------DG-E-----------------------IRKQF 261 (507)
Q Consensus 235 ----------~~g~-~Vtlv~~~~~~~~~~------------------d~-~-----------------------~~~~~ 261 (507)
+.+. +|+++-|+......| ++ + ..+.+
T Consensus 228 I~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l 307 (506)
T PTZ00188 228 ISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMV 307 (506)
T ss_pred CcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHH
Confidence 2232 578887765432111 01 1 01112
Q ss_pred HHHHH----------hcCcEEEcCceEEEEEEcCCeEE-EEEee--------cCCCceEEEEcCEEEEeecCCCCCCCCC
Q 010573 262 QRSLE----------KQKMKFMLKTKVVGVDLSGDGVK-LTLEP--------AAGGEKTILEADVVLVSAGRTPFTAGLG 322 (507)
Q Consensus 262 ~~~l~----------~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~--------~~~g~~~~i~~D~vi~a~G~~p~~~~l~ 322 (507)
.+... .+-+.+++....++|..+++.+. +.++. ..+++.+++++|+|+-++|++...
T Consensus 308 ~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p---- 383 (506)
T PTZ00188 308 KNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN---- 383 (506)
T ss_pred HHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC----
Confidence 22221 13456666777777765233332 44432 124556789999999999998753
Q ss_pred CcccCceecCCCCeecCCCCC--CCCCCeEEecCCCCCCC
Q 010573 323 LDKIGVETDKMGRIPVNERFA--TNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 323 ~~~~gl~~~~~G~i~Vd~~~~--t~~~~IyA~GD~a~~~~ 360 (507)
+. |+..|. . +.... .+ +..|++|++|-+-.+|.
T Consensus 384 ~~--g~pFd~-~-~~n~~-grv~~~~~g~Y~~GWiKrGP~ 418 (506)
T PTZ00188 384 FA--ENLYNQ-S-VQMFK-EDIGQHKFAIFKAGWFDKGPK 418 (506)
T ss_pred CC--CCCccc-c-CCCCC-CcccCCCCCcEEeeecCcCCC
Confidence 22 244442 2 22221 22 13799999999997775
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.7e-17 Score=158.90 Aligned_cols=251 Identities=18% Similarity=0.240 Sum_probs=143.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccc--cC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE--VD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~ 120 (507)
..+|+|||||||||++|..|.+.|++++++||.+.+||.|.+..... ...+..|+.+.-.+.+.-..+.+.+ -+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~----~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~ 81 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE----VVHSSVYKSLRTNLPKEMMGYSDFPFPER 81 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc----ccccchhhhhhccCChhhhcCCCCCCccc
Confidence 46999999999999999999999999999999999999998753221 0111123322222222111111111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCc----EEEEeE--EEEecCCEEEEEccCCc--eEEEEeCeEEEccCCC--C--
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKV----TYVKGY--GKFISPSEVSVDTIEGG--NTVVKGKNIIIATGSD--V-- 188 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~--~~~~d~~~~~v~~~~g~--~~~~~~d~lvlAtG~~--p-- 188 (507)
.+..++...+.. .+++.+.+..++ .+-... +...+...+.|...+.. .....||.|++|||-. |
T Consensus 82 ~~~~~p~~~e~~----~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~ 157 (448)
T KOG1399|consen 82 DPRYFPSHREVL----EYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRI 157 (448)
T ss_pred CcccCCCHHHHH----HHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCC
Confidence 222223333333 333444444443 222221 22222235666654433 3688999999999976 4
Q ss_pred CCCCCC--c-cCCceEecchhhcc-ccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHH
Q 010573 189 KSLPGI--T-IDEKRIVSSTGALA-LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRS 264 (507)
Q Consensus 189 ~~~pg~--~-~~~~~~~~~~~~~~-~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~ 264 (507)
+.+|+. + ..+ .++++.+... -...+|+|+|||+|.+|+|++..+++...+|++..+ ........+..
T Consensus 158 P~~~g~~~~~f~G-~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~~~~------- 228 (448)
T KOG1399|consen 158 PQIPGPGIESFKG-KIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEPPEI------- 228 (448)
T ss_pred CcCCCCchhhcCC-cceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccccccce-------
Confidence 234452 2 333 3444444443 334579999999999999999999999888888754 10000000000
Q ss_pred HHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCC
Q 010573 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL 321 (507)
Q Consensus 265 l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l 321 (507)
...++-.+ ..|..+ .+++..+. . .+....+|.+|+|||+.-...++
T Consensus 229 -~~~~~~~~--~~i~~~--~e~~~~~~-~-----~~~~~~~D~ii~ctgy~y~fPfl 274 (448)
T KOG1399|consen 229 -LGENLWQV--PSIKSF--TEDGSVFE-K-----GGPVERVDRIIFCTGYKYKFPFL 274 (448)
T ss_pred -eecceEEc--cccccc--cCcceEEE-c-----CceeEEeeeEEEeeeeEeeccee
Confidence 00122222 114433 23333322 1 45678899999999999877764
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=135.33 Aligned_cols=281 Identities=18% Similarity=0.254 Sum_probs=157.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..+|.|||+||||+.+|.+|.+. +++|.|+|+.+.+.|. .++|+.++.+..
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL--------------------------vRyGVAPDHpEv- 72 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL--------------------------VRYGVAPDHPEV- 72 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce--------------------------eeeccCCCCcch-
Confidence 45899999999999999999885 6899999999888774 223333222111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC---CCCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV---KSLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p---~~~pg~~~~ 197 (507)
......+...++.....++-+-..- . .+.+. +.+-.||.||||.|+.. ..+||-+
T Consensus 73 ------------KnvintFt~~aE~~rfsf~gNv~vG---~--dvsl~---eL~~~ydavvLaYGa~~dR~L~IPGe~-- 130 (468)
T KOG1800|consen 73 ------------KNVINTFTKTAEHERFSFFGNVKVG---R--DVSLK---ELTDNYDAVVLAYGADGDRRLDIPGEE-- 130 (468)
T ss_pred ------------hhHHHHHHHHhhccceEEEecceec---c--cccHH---HHhhcccEEEEEecCCCCcccCCCCcc--
Confidence 1111112233344444443321110 0 11111 13447999999999865 3577754
Q ss_pred CceEecchhhccc------------cCCCCeEEEEcCcHHHHHHHHHHHhc----------------------CCeeEEE
Q 010573 198 EKRIVSSTGALAL------------NEVPKKLVVIGAGYIGLEMGSVWARL----------------------GSEVTVV 243 (507)
Q Consensus 198 ~~~~~~~~~~~~~------------~~~~~~vvVvG~G~~g~e~A~~l~~~----------------------g~~Vtlv 243 (507)
...+++.+.+..+ +....+++|||.|.+++++|..|..- =.+|+++
T Consensus 131 l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lv 210 (468)
T KOG1800|consen 131 LSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLV 210 (468)
T ss_pred cccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEE
Confidence 3456666555432 22268999999999999999887432 1367888
Q ss_pred cccCccCCCC------------------C--------------------HHHHHHHHHHHHh---------cCcEE---E
Q 010573 244 EFAADIVPSM------------------D--------------------GEIRKQFQRSLEK---------QKMKF---M 273 (507)
Q Consensus 244 ~~~~~~~~~~------------------d--------------------~~~~~~~~~~l~~---------~Gv~i---~ 273 (507)
.|+..+...| + +++.+.+.+.+.+ .+.+. .
T Consensus 211 gRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~ 290 (468)
T KOG1800|consen 211 GRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLR 290 (468)
T ss_pred eccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHH
Confidence 7765432110 0 1222333333222 11110 0
Q ss_pred cCceEEEEEEcCCe---EEEEE---e---ecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCC
Q 010573 274 LKTKVVGVDLSGDG---VKLTL---E---PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344 (507)
Q Consensus 274 ~~~~v~~i~~~~~~---v~v~~---~---~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t 344 (507)
+.....+|..+.++ +.+.. + ....++.++++|++++.++|+....- . .|+..|.+.++.-|...+.
T Consensus 291 f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv----~-~gipFd~~kgvv~n~~GrV 365 (468)
T KOG1800|consen 291 FFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPV----D-SGIPFDDKKGVVPNVNGRV 365 (468)
T ss_pred HhcCHHHhccCcccccceEEEeeeehhhcccccCceEeeccceeEeeeeeccccc----C-CCCCcccccCcccCCCceE
Confidence 11111222222111 11111 1 12346778999999999999876432 1 1344443333333333331
Q ss_pred ----CCCCeEEecCCCCCCC-cHhHHHHHHHHHHHHHc
Q 010573 345 ----NIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLA 377 (507)
Q Consensus 345 ----~~~~IyA~GD~a~~~~-~~~~A~~~g~~aa~~i~ 377 (507)
-.|+||++|-+..+|. ....+++++...|+.|.
T Consensus 366 ~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~ 403 (468)
T KOG1800|consen 366 LVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIV 403 (468)
T ss_pred EeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHH
Confidence 3499999999998775 44556777777777765
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=136.07 Aligned_cols=289 Identities=18% Similarity=0.243 Sum_probs=167.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-C-CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc-cCccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL-G-LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK-FSSVE 118 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~-g-~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~ 118 (507)
++++|+|||||.+|++.|.++.++ + -+|.|||..+.--. -|...+ ...|+. .+...
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyY-------QPgfTL--------------vGgGl~~l~~sr 96 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYY-------QPGFTL--------------VGGGLKSLDSSR 96 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhccc-------CcceEE--------------eccchhhhhhcc
Confidence 568999999999999999999876 4 57999998542100 000000 000100 00000
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCc-
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT- 195 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~- 195 (507)
-....+.+ .+.+.++..+...+++...|.+.+| ++|+||++|||+|..-. .++|+.
T Consensus 97 r~~a~liP-------------------~~a~wi~ekv~~f~P~~N~v~t~gg--~eIsYdylviA~Giql~y~~IkGl~E 155 (446)
T KOG3851|consen 97 RKQASLIP-------------------KGATWIKEKVKEFNPDKNTVVTRGG--EEISYDYLVIAMGIQLDYGKIKGLVE 155 (446)
T ss_pred Cccccccc-------------------CCcHHHHHHHHhcCCCcCeEEccCC--cEEeeeeEeeeeeceeccchhcChHh
Confidence 00000000 0111111223334677778888888 89999999999997652 455543
Q ss_pred -cCCceEec---chhh-------ccccC------CC-CeEEEEcCcHHHHHHHHH-HHhcCC--eeEEEcccCccCCCCC
Q 010573 196 -IDEKRIVS---STGA-------LALNE------VP-KKLVVIGAGYIGLEMGSV-WARLGS--EVTVVEFAADIVPSMD 254 (507)
Q Consensus 196 -~~~~~~~~---~~~~-------~~~~~------~~-~~vvVvG~G~~g~e~A~~-l~~~g~--~Vtlv~~~~~~~~~~d 254 (507)
++...+.+ .... ...+. .| ..+-..|+-.-.+-++.. +++.|. ++.++....-..-.--
T Consensus 156 al~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgV 235 (446)
T KOG3851|consen 156 ALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGV 235 (446)
T ss_pred hccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecH
Confidence 22223322 2111 11111 11 223344666666666655 455664 4555543321100113
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G 334 (507)
+...+.+++..++++|++.......++..++..-..+.-+ ..|...+++++++-+....++... +....+ .|..|
T Consensus 236 k~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~-kPG~t~ei~yslLHv~Ppms~pe~---l~~s~~-adktG 310 (446)
T KOG3851|consen 236 KHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD-KPGVTEEIEYSLLHVTPPMSTPEV---LANSDL-ADKTG 310 (446)
T ss_pred HHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC-CCCceeEEeeeeeeccCCCCChhh---hhcCcc-cCccc
Confidence 4567788888899999999888888886554432222211 236677899999988777665443 344432 36679
Q ss_pred CeecCCC-CC-CCCCCeEEecCCCCCCCc--HhHHHHHHHHHHHHHc
Q 010573 335 RIPVNER-FA-TNIPGVYAIGDVIPGPML--AHKAEEDGVACVEFLA 377 (507)
Q Consensus 335 ~i~Vd~~-~~-t~~~~IyA~GD~a~~~~~--~~~A~~~g~~aa~~i~ 377 (507)
++.||.. +| +..||||++|||.+.|.. +..+..|..+.-+|+.
T Consensus 311 fvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 311 FVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhhhhHH
Confidence 9999975 66 689999999999988863 3333345556666664
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-13 Score=129.58 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=119.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccc-------cchhhhhhh-hHHHHHHHhhhhhCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGC-------IPSKALLHS-SHMYHEAMHSFASHG 111 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~-------~p~~~~~~~-~~~~~~~~~~~~~~g 111 (507)
+++|+|||+|++|+..|.+|.+. ...|.|+|+...+|+-..+... +|+..+.-. ...+..+.+++...+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 36899999999999999999986 2339999999998855544433 333332222 222333444444431
Q ss_pred cccCcc--ccChHHHHHHHHHHHHHHHHHHHHHHHhCC---cEEEEeEEEEec----CCEEEEEccCCceEEEEeCeEEE
Q 010573 112 VKFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKKNK---VTYVKGYGKFIS----PSEVSVDTIEGGNTVVKGKNIII 182 (507)
Q Consensus 112 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~d----~~~~~v~~~~g~~~~~~~d~lvl 182 (507)
-...+. ...+...+..+.-+.+.+.+.+..++++.. +.+++.++..+. .....+...+| ....+|-+|+
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g--~~~~ad~~Vl 158 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADG--PSEIADIIVL 158 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCC--CeeeeeEEEE
Confidence 111100 011112222222222333344444444443 777777665433 23456677777 7789999999
Q ss_pred ccCCCCCCCCCCc--c--CCceEecchhhccc--cCCCCeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccC
Q 010573 183 ATGSDVKSLPGIT--I--DEKRIVSSTGALAL--NEVPKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAA 247 (507)
Q Consensus 183 AtG~~p~~~pg~~--~--~~~~~~~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~ 247 (507)
|||..++..+... . ....+-+......+ .....+|+|+|+|.+.++....+.+.|. +||.++|+.
T Consensus 159 atgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 159 ATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred eccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 9998765433311 1 11122222222222 2335669999999999999999999885 689998876
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-13 Score=100.98 Aligned_cols=78 Identities=38% Similarity=0.681 Sum_probs=73.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEe
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~ 293 (507)
+++|||+|++|+|+|..|.++|.+||++++.+.+++.+++++.+.+.+.+++.||++++++.+++++.++++++++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999998877667765
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.4e-13 Score=134.84 Aligned_cols=144 Identities=22% Similarity=0.289 Sum_probs=82.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccc---------hhh----------------hhhhh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIP---------SKA----------------LLHSS 97 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p---------~~~----------------~~~~~ 97 (507)
++||+|||+|.||++||..|++.|.+|+||||....+.++...+.++ ... +....
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 37999999999999999999999999999999754332222222221 000 00001
Q ss_pred HHHHHHHhhhhhCCcccCccc----cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEe--cCCEEE-EEccCC
Q 010573 98 HMYHEAMHSFASHGVKFSSVE----VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI--SPSEVS-VDTIEG 170 (507)
Q Consensus 98 ~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~~~-v~~~~g 170 (507)
.......+++...|+++.... ..++............+...+.+..++.+++++.+.+..+ +...+. +.. ++
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g 159 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DG 159 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CC
Confidence 111223345666777654211 1111111001111234455555666778999887765544 222332 332 44
Q ss_pred ceEEEEeCeEEEccCCCCC
Q 010573 171 GNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 171 ~~~~~~~d~lvlAtG~~p~ 189 (507)
..+.++.||||||+...
T Consensus 160 --~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 160 --ELLKFDATVIATGGFSG 176 (466)
T ss_pred --EEEEeCeEEECCCcCcC
Confidence 57899999999998653
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9e-13 Score=124.85 Aligned_cols=140 Identities=30% Similarity=0.440 Sum_probs=93.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC--------ceecccccc-chhhhhhhh---HH---------H
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTCLNVGCI-PSKALLHSS---HM---------Y 100 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G--------G~~~~~~~~-p~~~~~~~~---~~---------~ 100 (507)
+.+||+|||||||||.||..+++.|++|+|||+.+.+| |.|+..... |...+.+.+ ++ .
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 35899999999999999999999999999999998885 777654432 221111111 11 2
Q ss_pred HHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecC--CEEEEEccCCceEEEEe
Q 010573 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP--SEVSVDTIEGGNTVVKG 177 (507)
Q Consensus 101 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~--~~~~v~~~~g~~~~~~~ 177 (507)
+.++.+++..|+.... -+..++++..+. -..+.+.+...+++.+|+++..+ +..++. ....+.+.+| .++.+
T Consensus 82 ~d~i~~~e~~Gi~~~e--~~~Gr~Fp~sdk-A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g--~~i~~ 156 (408)
T COG2081 82 EDFIDWVEGLGIALKE--EDLGRMFPDSDK-ASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG--ETVKC 156 (408)
T ss_pred HHHHHHHHhcCCeeEE--ccCceecCCccc-hHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC--CEEEc
Confidence 3455666777776431 111222222111 12344445566778899999885 444544 4688888888 58999
Q ss_pred CeEEEccCC
Q 010573 178 KNIIIATGS 186 (507)
Q Consensus 178 d~lvlAtG~ 186 (507)
|.+|||||.
T Consensus 157 d~lilAtGG 165 (408)
T COG2081 157 DSLILATGG 165 (408)
T ss_pred cEEEEecCC
Confidence 999999994
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=126.88 Aligned_cols=145 Identities=20% Similarity=0.245 Sum_probs=80.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc-ccc-----c----h----------------hhhhhh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV-GCI-----P----S----------------KALLHS 96 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~-~~~-----p----~----------------~~~~~~ 96 (507)
++||||||+|.||++||+.+++.|. |+||||.+..+|..... |.+ + . ..+...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4799999999999999999999997 99999986666544322 111 0 0 000011
Q ss_pred hHHHHHHHhhhhhCCcccCccc---c--------ChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeE-EEEe--cCC
Q 010573 97 SHMYHEAMHSFASHGVKFSSVE---V--------DLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGY-GKFI--SPS 161 (507)
Q Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~--d~~ 161 (507)
........+++...|+.+.... + .+.......+.....+...+.+..++ .+|+++.+. +..+ +..
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g 160 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETG 160 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCC
Confidence 1112234456666777654211 0 00000000000112333444455555 689988874 4433 333
Q ss_pred EEE-EEccC-CceEEEEeCeEEEccCCCC
Q 010573 162 EVS-VDTIE-GGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 162 ~~~-v~~~~-g~~~~~~~d~lvlAtG~~p 188 (507)
.+. +...+ ++...+.++.||+|||...
T Consensus 161 ~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 161 RVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred EEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 332 32222 3345789999999999764
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=127.13 Aligned_cols=108 Identities=16% Similarity=0.263 Sum_probs=79.9
Q ss_pred ccCCCCeEEEEcCcHHHHHHHHH-------HHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 210 LNEVPKKLVVIGAGYIGLEMGSV-------WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 210 ~~~~~~~vvVvG~G~~g~e~A~~-------l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
+...|+.++++|++.+++|++.. +.++|.+|++....+.....+...+...+.+.+++.|+++++++.++++.
T Consensus 156 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~ 235 (557)
T PRK07843 156 YGKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLY 235 (557)
T ss_pred cccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEE
Confidence 34558889999999999998865 67778888776655544455677788888999999999999999999998
Q ss_pred EcCCeEE-EEEeecCCCceEEEEcC-EEEEeec-CCCCCC
Q 010573 283 LSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAG-RTPFTA 319 (507)
Q Consensus 283 ~~~~~v~-v~~~~~~~g~~~~i~~D-~vi~a~G-~~p~~~ 319 (507)
.+++.+. +.... ++....+.++ .||+|+| +.+|.+
T Consensus 236 ~~~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~ 273 (557)
T PRK07843 236 VEDGRVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQ 273 (557)
T ss_pred EeCCEEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHH
Confidence 7666554 44432 3344568886 5888765 555544
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=119.15 Aligned_cols=314 Identities=21% Similarity=0.260 Sum_probs=156.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC--------Cceeccccc--cc----------------hhhhhhhhH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL--------GGTCLNVGC--IP----------------SKALLHSSH 98 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~--------GG~~~~~~~--~p----------------~~~~~~~~~ 98 (507)
||+|||+|.|||++|+.|.+. ++|+|+.|...- ||.....+- -| .........
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999996533 222211111 01 111111112
Q ss_pred HHHHHHhhhhhCCcccCccc---cChH--------HHHHHHHHHHHHHHHHHHHHHH-hCCcEEEEeE-EEE--ecCC-E
Q 010573 99 MYHEAMHSFASHGVKFSSVE---VDLP--------AMMAQKDKAVSNLTRGIEGLFK-KNKVTYVKGY-GKF--ISPS-E 162 (507)
Q Consensus 99 ~~~~~~~~~~~~g~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~--~d~~-~ 162 (507)
.-....+++..+|+.|+.-. +.+. ++....+.....+...+.+..+ ..+|+++.+. +.. ++.. .
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 22344566777888776322 2111 1111122223444454544444 4799999884 432 2333 2
Q ss_pred E-EEEc--cCCceEEEEeCeEEEccCCCCC------CCCCCccCCceE-----ecchhhccccCCCCeEEEEcCcHHHHH
Q 010573 163 V-SVDT--IEGGNTVVKGKNIIIATGSDVK------SLPGITIDEKRI-----VSSTGALALNEVPKKLVVIGAGYIGLE 228 (507)
Q Consensus 163 ~-~v~~--~~g~~~~~~~d~lvlAtG~~p~------~~pg~~~~~~~~-----~~~~~~~~~~~~~~~vvVvG~G~~g~e 228 (507)
+ -+.. .+++...+.++.+|||||.-.. .+.+...++..+ ....|.......| +++-.+ +-...-
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHP-T~l~~~-~~~~~L 245 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHP-TALYIP-QRRAFL 245 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeecc-ceecCC-CCccce
Confidence 2 2222 2223578899999999996531 111111111100 0001111100001 111111 111111
Q ss_pred HHHHHHhcCCeeEEEcccCccCCCCCH--------HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCce
Q 010573 229 MGSVWARLGSEVTVVEFAADIVPSMDG--------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK 300 (507)
Q Consensus 229 ~A~~l~~~g~~Vtlv~~~~~~~~~~d~--------~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~ 300 (507)
+...++-.|. +.+-..+.++++.++| -++..+...+++.|-.+++..+- + .+..+.
T Consensus 246 iSEAVRGEGA-~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD~s~--~--~~~~~~----------- 309 (518)
T COG0029 246 ISEAVRGEGA-ILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLDISH--I--PGDFFE----------- 309 (518)
T ss_pred eehhhhcCcc-EEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEeccC--C--Cchhhh-----------
Confidence 2233333342 2333455667764432 24455667777766655543221 1 011111
Q ss_pred EEEE-cCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC-----CCcHhHHH----HHHH
Q 010573 301 TILE-ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-----PMLAHKAE----EDGV 370 (507)
Q Consensus 301 ~~i~-~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~-----~~~~~~A~----~~g~ 370 (507)
+.++ ....+...|..|..+.++.. ....--.|+|.||.+.||++|++||+|.++.. ..++++.. -.|.
T Consensus 310 ~rFP~I~~~c~~~GiD~~r~~IPV~--PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~ 387 (518)
T COG0029 310 RRFPTIYAACLKAGIDPTREPIPVV--PAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGK 387 (518)
T ss_pred hhCcHHHHHHHHcCCCcccCccCcc--chhheecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHHHHH
Confidence 1121 11122334555554432211 11122348999999999999999999999942 33555544 4467
Q ss_pred HHHHHHcCC
Q 010573 371 ACVEFLAGK 379 (507)
Q Consensus 371 ~aa~~i~~~ 379 (507)
.+|++|.+.
T Consensus 388 ~aA~~i~~~ 396 (518)
T COG0029 388 RAAEDIAGR 396 (518)
T ss_pred HHHHHhhcc
Confidence 888888765
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=128.20 Aligned_cols=48 Identities=33% Similarity=0.426 Sum_probs=38.4
Q ss_pred CCCCeecCCCCCCCCCCeEEecCCCCCCC--------cHhHHHHHHHHHHHHHcCC
Q 010573 332 KMGRIPVNERFATNIPGVYAIGDVIPGPM--------LAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 332 ~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~--------~~~~A~~~g~~aa~~i~~~ 379 (507)
..|+|.||++.||++||+||+|+++++.. ....|+..|++|+++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 34889999999999999999999985431 2346888899999998643
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=126.24 Aligned_cols=147 Identities=23% Similarity=0.359 Sum_probs=81.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCC-cee-cccccc-----ch---------------------h
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG-GTC-LNVGCI-----PS---------------------K 91 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~G-G~~-~~~~~~-----p~---------------------~ 91 (507)
..+||||||+|.||++||+.+++. |.+|+||||....+ |.. ...+.+ |. .
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 458999999999999999999987 68999999976532 221 111111 10 0
Q ss_pred hhhhhhHHHHHHHhhhhhCCcccCcc---ccChHHHHHH-----HHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--c-
Q 010573 92 ALLHSSHMYHEAMHSFASHGVKFSSV---EVDLPAMMAQ-----KDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--S- 159 (507)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d- 159 (507)
.+...........+++...|+.+... .+........ .......+...+.+.+++.+++++.+. +..+ +
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~ 167 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDA 167 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcC
Confidence 00011111123445666777766421 1111110000 000112334445555667789988874 4433 3
Q ss_pred CCEEE-E---EccCCceEEEEeCeEEEccCCCC
Q 010573 160 PSEVS-V---DTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 160 ~~~~~-v---~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
...+. + ...+|+...+.++.||||||+..
T Consensus 168 ~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 168 DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred CCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 22221 2 23456556789999999999864
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=118.55 Aligned_cols=188 Identities=15% Similarity=0.099 Sum_probs=98.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccccchhhhhh----------hhHHHHHHHh----hh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLH----------SSHMYHEAMH----SF 107 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~~~~----------~~~~~~~~~~----~~ 107 (507)
++|+||||||+|+++|.+|.+.+ .+|+|||++..+|.-..+...-++..+.. ...+...... .+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998864 58999999888883322222111111110 1111111111 01
Q ss_pred hhCCcccCccccChHHHHHH--HHHHHHHHHHHHHHHHHhCC--cEEEEe-EEEEe--cCCEEEEEccCCceEEEEeCeE
Q 010573 108 ASHGVKFSSVEVDLPAMMAQ--KDKAVSNLTRGIEGLFKKNK--VTYVKG-YGKFI--SPSEVSVDTIEGGNTVVKGKNI 180 (507)
Q Consensus 108 ~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~--d~~~~~v~~~~g~~~~~~~d~l 180 (507)
...++..... +...+.++ ...++......+.+.+...+ +.++.. .+..+ +...+.+.+.++ ...+.+|+|
T Consensus 82 ~~~g~~~~~l--~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~g-g~~i~aD~V 158 (534)
T PRK09897 82 QRYGVKKETL--HDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQD-LPSETFDLA 158 (534)
T ss_pred HhcCCcceee--cCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCC-CeEEEcCEE
Confidence 1222221100 00011111 11112222222333444555 566654 55544 344566665442 267899999
Q ss_pred EEccCCCCCCCCCCccCCceEecchhhccc-cCCCCeEEEEcCcHHHHHHHHHHHhc
Q 010573 181 IIATGSDVKSLPGITIDEKRIVSSTGALAL-NEVPKKLVVIGAGYIGLEMGSVWARL 236 (507)
Q Consensus 181 vlAtG~~p~~~pg~~~~~~~~~~~~~~~~~-~~~~~~vvVvG~G~~g~e~A~~l~~~ 236 (507)
|||||..++..+... ...+.+..+.... ...+.+|+|+|.|.++++++..|...
T Consensus 159 VLAtGh~~p~~~~~~--~~yi~~pw~~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 159 VIATGHVWPDEEEAT--RTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EECCCCCCCCCChhh--ccccCCCCcchhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 999997654322111 1111122211111 11268999999999999999888755
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-10 Score=117.44 Aligned_cols=37 Identities=35% Similarity=0.553 Sum_probs=33.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG 79 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~G 79 (507)
.+||||||+|.||++||+.+++. |.+|+||||....+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 57999999999999999999998 99999999976543
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.1e-11 Score=124.36 Aligned_cols=244 Identities=20% Similarity=0.238 Sum_probs=137.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccc---cchhhhhhh---hHHHHHHHhhhhhCCccc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC---IPSKALLHS---SHMYHEAMHSFASHGVKF 114 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~---~p~~~~~~~---~~~~~~~~~~~~~~g~~~ 114 (507)
..++||||||+|+||++||+.+++.|.+|+|+||....||+....+. +|...+... ......+..++....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~--- 83 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREAARTYLKHET--- 83 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHHHHHHHHHhc---
Confidence 34689999999999999999999999999999999888887655443 221111000 000111111111110
Q ss_pred CccccChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC--CCCC
Q 010573 115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD--VKSL 191 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~--p~~~ 191 (507)
....+...+. ...+.-.. ..++++. .++.+... . ..++---..|.. ++.+
T Consensus 84 -~~~~~~~~~~----~~~~~~~~-~i~wl~~~~g~~~~~~-~--------------------~~~~~~~~~~~~~~g~~~ 136 (574)
T PRK12842 84 -GAFFDAAAVE----AFLDNGPE-MVEFFERETEVKFVPT-L--------------------YPDYHPDAPGGVDIGRSI 136 (574)
T ss_pred -CCCCCHHHHH----HHHhccHH-HHHHHHhCCCCceeeC-C--------------------CCCCCCCCCCccCCCccc
Confidence 0001100000 00111111 1234433 34543211 0 000000000100 0100
Q ss_pred CCCccCCceEecchhhccccCCCCeEEEEcCcH--HHHHHHHHHHhcCCeeEEEcccCccCCCCC--------------H
Q 010573 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGY--IGLEMGSVWARLGSEVTVVEFAADIVPSMD--------------G 255 (507)
Q Consensus 192 pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~--~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d--------------~ 255 (507)
+....+. ..+ .++..++...++++.|+|++. ++.+++..+...+..++++.+.+.+++.++ .
T Consensus 137 ~~~~~~~-~~l-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~ 214 (574)
T PRK12842 137 LAAPYDI-RGL-GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGN 214 (574)
T ss_pred cCCCCCh-hhh-hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHH
Confidence 0000011 111 445556667789999999998 899999999999988888776665554332 4
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcC-EEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~ 318 (507)
++...+.+.+++.|+++++++.++++..+++.+. +.+.+ .+....+.++ .||+|+|..++.
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVID--AGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEc--CCceEEEEeCCEEEEcCCCccch
Confidence 5667778888899999999999999987666554 44432 1122357786 799999987754
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=130.11 Aligned_cols=66 Identities=26% Similarity=0.256 Sum_probs=45.1
Q ss_pred ecCCCCCCCCCCcc--cCce-ecCCCCeecCCCCCCCCCCeEEecCCCCCCC-cHhHHHHHHHHHHHHHc
Q 010573 312 AGRTPFTAGLGLDK--IGVE-TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLA 377 (507)
Q Consensus 312 ~G~~p~~~~l~~~~--~gl~-~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~-~~~~A~~~g~~aa~~i~ 377 (507)
.|..|..+.+.... .+.. ....|+|+||.+++|++||+||+|||++.+. ....|.-.|+.|+.++.
T Consensus 337 ~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~ 406 (897)
T PRK13800 337 RGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA 406 (897)
T ss_pred cCCCcccccceecccccccccCCCcceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence 36777666533111 1111 1234899999999999999999999986533 34467788888888775
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-11 Score=124.19 Aligned_cols=41 Identities=34% Similarity=0.464 Sum_probs=35.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~ 83 (507)
.+||||||+|.||++||+.+++. |.+|+|+||....+|.+.
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~ 46 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTV 46 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChh
Confidence 47999999999999999999987 479999999876665443
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-09 Score=105.52 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC-----CCCCCcccCc
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT-----AGLGLDKIGV 328 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~-p~~-----~~l~~~~~gl 328 (507)
..+.+.+.+.+++.|++++.++.|++++.+++++...... ++....+.+|.+|+|+|.. ..- +.+.-.-.++
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~--~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L 340 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTR--NHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGL 340 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEec--CCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCC
Confidence 4667778899999999999999999998777776643321 1112479999999999987 321 0000000011
Q ss_pred ee---------------c----CCCCeecCCCCCC-----CCCCeEEecCCCCCCC------cHhHHHHHHHHHHHHHc
Q 010573 329 ET---------------D----KMGRIPVNERFAT-----NIPGVYAIGDVIPGPM------LAHKAEEDGVACVEFLA 377 (507)
Q Consensus 329 ~~---------------~----~~G~i~Vd~~~~t-----~~~~IyA~GD~a~~~~------~~~~A~~~g~~aa~~i~ 377 (507)
++ + -.-+|.+|+.+|. ..+|+||+|-+.+++. -...|+..|-.||++|+
T Consensus 341 ~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 341 DVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred CcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 11 0 0124779999883 3899999999997654 23578888888888773
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.4e-12 Score=123.35 Aligned_cols=140 Identities=26% Similarity=0.351 Sum_probs=75.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC--------ceecccc-ccchhhhh-----------h--hhHHHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTCLNVG-CIPSKALL-----------H--SSHMYH 101 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G--------G~~~~~~-~~p~~~~~-----------~--~~~~~~ 101 (507)
|||+|||||||||.||+.|++.|++|+|+||++.+| |.|+... ..+...+. . ......
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 799999999999999999999999999999998885 7886444 22111111 0 111123
Q ss_pred HHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCE-EEEEccCCceEEEEe
Q 010573 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSE-VSVDTIEGGNTVVKG 177 (507)
Q Consensus 102 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~-~~v~~~~g~~~~~~~ 177 (507)
.+..++.+.|+...... ..++++..+ ....+...+...+++.+++++.++ +..+ +.+. +.|.++++ ..+.+
T Consensus 81 d~~~ff~~~Gv~~~~~~--~gr~fP~s~-~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~~~~a 155 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEE--DGRVFPKSD-KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--GEYEA 155 (409)
T ss_dssp HHHHHHHHTT--EEE-S--TTEEEETT---HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--EEEEE
T ss_pred HHHHHHHhcCCeEEEcC--CCEECCCCC-cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--ccccC
Confidence 45667778887542110 011111111 112334445566777899999874 4444 3444 77777555 79999
Q ss_pred CeEEEccCCCC
Q 010573 178 KNIIIATGSDV 188 (507)
Q Consensus 178 d~lvlAtG~~p 188 (507)
|+||||||+..
T Consensus 156 ~~vILAtGG~S 166 (409)
T PF03486_consen 156 DAVILATGGKS 166 (409)
T ss_dssp SEEEE----SS
T ss_pred CEEEEecCCCC
Confidence 99999999754
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-10 Score=117.93 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=35.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
..+||||||+|.||++||..+++. .+|+||||....||..
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 458999999999999999999986 8999999987666643
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.6e-11 Score=122.86 Aligned_cols=244 Identities=19% Similarity=0.232 Sum_probs=135.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc---ccchhhhhhhhHHHH---HHHhhhhhCCccc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKALLHSSHMYH---EAMHSFASHGVKF 114 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~~~~~~~~~~---~~~~~~~~~g~~~ 114 (507)
..++||+|||+|++|++||..+++.|++|+||||++..||.+...+ |+|...+........ .....+....-
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-- 87 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHELG-- 87 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHhC--
Confidence 3468999999999999999999999999999999888999887765 466554432222111 11111111100
Q ss_pred CccccChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC---C
Q 010573 115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK---S 190 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~---~ 190 (507)
...+...+..+ .+.... ..+|+++ .++++..... . ..+.....-.++|.++. .
T Consensus 88 --~~~~~~l~~~~----~~~s~~-~~~wl~~~~gv~~~~~~~-----------~-----~d~~~~~~~~~~ggr~~~~~~ 144 (581)
T PRK06134 88 --ARYDAARIDAF----LEAGPH-MVAFFERHTALRFADGNA-----------I-----PDYHGDTPGAATGGRSLIAAP 144 (581)
T ss_pred --cCCCHHHHHHH----HhccHH-HHHHHHhcCCceeeecCC-----------C-----CCCCCCCCCCCCCCCeeccCC
Confidence 00111111111 111111 1245544 3565421100 0 00011111234444432 1
Q ss_pred CCCCccCCceEecchhhccccCCCCeEEEEcCcHHH-HHHHHHHHhcCCeeEEEcccCccCCC--------------CCH
Q 010573 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIG-LEMGSVWARLGSEVTVVEFAADIVPS--------------MDG 255 (507)
Q Consensus 191 ~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g-~e~A~~l~~~g~~Vtlv~~~~~~~~~--------------~d~ 255 (507)
+++... .++...+...+.++.++|++.++ .+++..+...+..+.++.+..++++. ...
T Consensus 145 ~~g~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 217 (581)
T PRK06134 145 FDGREL-------GALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGN 217 (581)
T ss_pred CChhhh-------hHHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHH
Confidence 222110 02333344456677788888765 67777777666665554443322221 134
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEc-CEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEA-DVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~ 318 (507)
.+...+.+.+++.|++++.+++++++..+++.+. +.+.. ++....+.+ +.||+|+|-..+.
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccC
Confidence 5667788888999999999999999876655543 44432 122346888 9999999876643
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=125.76 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=35.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
...+||||||+|.||++||+.+++ |.+|+||||....||..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCch
Confidence 346899999999999999999975 99999999987766654
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=119.20 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=35.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
++||||||+|.||++||+++++ |.+|+||||....||.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~ 42 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSH 42 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCch
Confidence 5799999999999999999987 899999999877666553
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-11 Score=122.81 Aligned_cols=39 Identities=33% Similarity=0.600 Sum_probs=34.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCce
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGT 81 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~ 81 (507)
++||||||||.||++||++|++. |.+|+|+||....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 57999999999999999999987 4899999997665543
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=120.80 Aligned_cols=40 Identities=35% Similarity=0.454 Sum_probs=34.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCcee
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTC 82 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~ 82 (507)
.+||+|||+|.||++||..+++. |.+|+||||....||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 57999999999999999999987 58999999977665544
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=118.27 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=35.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
.++||||||+|.||++||+.+++.| +|+||||....||..
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 4589999999999999999999999 999999987776643
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-11 Score=119.59 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=79.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc-cccc------------------------hhhhhhh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV-GCIP------------------------SKALLHS 96 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~-~~~p------------------------~~~~~~~ 96 (507)
.++||||||+|.||++||..++ .|.+|+||||.+..||..... +.+. ...+...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4689999999999999999985 699999999987766543211 1111 0001111
Q ss_pred hHHHHHHHhhhhhCCcccCccc--cChH--------HHHHHHHHHHHHHHHHHHHHHH-hCCcEEEEeE-EEEe--cCCE
Q 010573 97 SHMYHEAMHSFASHGVKFSSVE--VDLP--------AMMAQKDKAVSNLTRGIEGLFK-KNKVTYVKGY-GKFI--SPSE 162 (507)
Q Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~~--d~~~ 162 (507)
........+++...|+.+.... .++. +.....+..-..+...+.+.++ +.+|+++.++ +..+ +...
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~ 161 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT 161 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence 1112234455666676653210 0110 0000000011223333444443 4589998874 4443 3333
Q ss_pred E-EE-EccCCceEEEEeCeEEEccCCCC
Q 010573 163 V-SV-DTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 163 ~-~v-~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
+ -+ ...+++...+.++.||||||+..
T Consensus 162 v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 162 CIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 2 11 12344345789999999999744
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=119.29 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=33.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG 80 (507)
.++||||||+|.||++||+++++. .+|+|+||....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 358999999999999999999986 99999999765443
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=118.62 Aligned_cols=40 Identities=38% Similarity=0.451 Sum_probs=35.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCce
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (507)
..+||||||+|.||++||+.+++.|.+|+||||....+|.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH 43 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 3579999999999999999999999999999997655543
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=120.67 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=35.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC---CcEEEEecCCCCCcee
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG---LKTTCIEKRGALGGTC 82 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g---~~V~lie~~~~~GG~~ 82 (507)
++||+|||+|.||++||..+++.| .+|+|+||....||.+
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 579999999999999999999998 8999999977665543
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=118.53 Aligned_cols=40 Identities=35% Similarity=0.547 Sum_probs=35.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCce
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (507)
.++||||||+|.||++||+.+++.|.+|+|+||....+|.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 3589999999999999999999999999999997766543
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=120.07 Aligned_cols=40 Identities=35% Similarity=0.501 Sum_probs=35.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCce
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (507)
.++||||||+|.||++||+++++.|.+|+||||....+|.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 4689999999999999999999999999999997655543
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-09 Score=112.88 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=34.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
.++||+|||+|.||++||..+++.|.+|+||||....+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 46899999999999999999999999999999866554
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=121.64 Aligned_cols=36 Identities=42% Similarity=0.581 Sum_probs=33.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCc
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG 80 (507)
||||||+|.||++||+.+++.|.+|+||||....+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 799999999999999999999999999999765543
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-09 Score=108.13 Aligned_cols=34 Identities=41% Similarity=0.663 Sum_probs=30.8
Q ss_pred cEEEECCChHHHHHHHHHH----HCCCcEEEEecCCCC
Q 010573 45 DVVVIGGGPGGYVAAIKAA----QLGLKTTCIEKRGAL 78 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~----~~g~~V~lie~~~~~ 78 (507)
||||||+|.||++||+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999996543
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-10 Score=116.36 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=35.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
+.||||||+|.||++||+.+++.|.+|+||||....||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 4699999999999999999999999999999977655443
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-10 Score=118.09 Aligned_cols=37 Identities=41% Similarity=0.460 Sum_probs=34.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
++||||||+|.||++||..+++.|.+|+||||....+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5799999999999999999999999999999976554
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-09 Score=109.72 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=30.7
Q ss_pred EEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 46 vvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
|||||+|.||++||+.+++.|.+|+|+||....
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999997744
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=115.42 Aligned_cols=38 Identities=39% Similarity=0.437 Sum_probs=34.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG 80 (507)
.+||||||+|.||++||+.+++.|.+|+||||....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 57999999999999999999999999999999765443
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.2e-10 Score=113.48 Aligned_cols=140 Identities=23% Similarity=0.402 Sum_probs=79.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC-CCCceeccccccchhhhhhhhHHHHHHH-------hhhhhCCcc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAM-------HSFASHGVK 113 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~g~~ 113 (507)
..|||+|||||+||+.||..+++.|++|+|||++. .+|+. +|.|+.......++.+.+. ......++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m----~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM----SCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc----CCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 45999999999999999999999999999999973 56642 4555443222222222111 111112222
Q ss_pred cCccccC-hHHHH-HHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEe--cCCEE-EEEccCCceEEEEeCeEEEccCCC
Q 010573 114 FSSVEVD-LPAMM-AQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEV-SVDTIEGGNTVVKGKNIIIATGSD 187 (507)
Q Consensus 114 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--d~~~~-~v~~~~g~~~~~~~d~lvlAtG~~ 187 (507)
+...... -+... .+..-....+...+.+.+++ .+++++.+.+..+ +...+ .|.+.+| ..+.++.||+|||..
T Consensus 79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG--~~I~Ak~VIlATGTF 156 (618)
T PRK05192 79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDG--LEFRAKAVVLTTGTF 156 (618)
T ss_pred eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCC--CEEECCEEEEeeCcc
Confidence 1100000 00000 00000012233344444544 4899888876554 34443 3666777 789999999999964
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-08 Score=93.25 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCC-----------CC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGL-----------GL 323 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l-----------~~ 323 (507)
.+.+.+...+++.|..++.+..|.+.+-.+++++ +.++ +.....+.+|..|+|+|.--..... .+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr---n~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~l 335 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR---NHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDL 335 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEec---ccccCCCChhHeeeeccccccccchhhhhhhhcchhhc
Confidence 4566778888999999999999999988777776 4433 2233457799999999843222110 01
Q ss_pred cccCc----eec----------CCCCeecCCCCCCC-----CCCeEEecCCCCCCC------cHhHHHHHHHHHHHHHcC
Q 010573 324 DKIGV----ETD----------KMGRIPVNERFATN-----IPGVYAIGDVIPGPM------LAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 324 ~~~gl----~~~----------~~G~i~Vd~~~~t~-----~~~IyA~GD~a~~~~------~~~~A~~~g~~aa~~i~~ 378 (507)
+-... ++. ..=++.+|+.+|.+ ++|+||||.+.+++. -...|+..|-.||+.|+.
T Consensus 336 di~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~ 415 (421)
T COG3075 336 DILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAE 415 (421)
T ss_pred ccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHH
Confidence 10000 000 00136678887743 579999999997754 234677777778877764
Q ss_pred C
Q 010573 379 K 379 (507)
Q Consensus 379 ~ 379 (507)
.
T Consensus 416 ~ 416 (421)
T COG3075 416 R 416 (421)
T ss_pred H
Confidence 3
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-09 Score=108.29 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC-CCce
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA-LGGT 81 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~-~GG~ 81 (507)
.++||||||+|.||++||++++ +.+|+||||... .||.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~ 46 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGAS 46 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcc
Confidence 4589999999999999999997 579999999765 4443
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-09 Score=99.24 Aligned_cols=135 Identities=24% Similarity=0.330 Sum_probs=78.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccc-cchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.++||+||||||||++||++|++.|++|+|+|++..+||.+...+. .+...+ .......+...++.+......
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v------~~~~~~~l~~~gv~~~~~~~g 97 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVV------QEEADEILDEFGIRYKEVEDG 97 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccc------hHHHHHHHHHCCCCceeecCc
Confidence 3589999999999999999999999999999998888765332221 111111 112234455566654321111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCC-EE-EEEcc------CC---ceEEEEeCeEEEccCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPS-EV-SVDTI------EG---GNTVVKGKNIIIATGS 186 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~-~~-~v~~~------~g---~~~~~~~d~lvlAtG~ 186 (507)
.... . ...+...+.+...+.+++++.+. +..+ +.+ .+ -+... .+ +...+.++.+|+|||.
T Consensus 98 ~~~v--d----~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 98 LYVA--D----SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred ceec--c----HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCC
Confidence 0000 0 12233444455567799988774 3332 222 21 11111 11 2367899999999996
Q ss_pred CC
Q 010573 187 DV 188 (507)
Q Consensus 187 ~p 188 (507)
..
T Consensus 172 ~a 173 (257)
T PRK04176 172 DA 173 (257)
T ss_pred Cc
Confidence 53
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=108.00 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=77.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHH-hhhhhCC-cccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHG-VKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~g-~~~~~~~~~~ 121 (507)
+||+||||||||++||..|++.|++|+|+|++...+..| .+++|...+..... ..... ....... +......+++
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c--g~~i~~~~l~~~g~-~~~~~~~~i~~~~~~~p~~~~~~~ 77 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC--GGAIPLCMVDEFAL-PRDIIDRRVTKMKMISPSNIAVDI 77 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc--cccccHhhHhhccC-chhHHHhhhceeEEecCCceEEEe
Confidence 589999999999999999999999999999976655555 34455433322110 01111 1111100 0011111111
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhCCcEEEEeEEEEec-----CCEEEEE--ccC-----CceEEEEeCeEEEccC
Q 010573 122 PAMMAQKD----KAVSNLTRGIEGLFKKNKVTYVKGYGKFIS-----PSEVSVD--TIE-----GGNTVVKGKNIIIATG 185 (507)
Q Consensus 122 ~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d-----~~~~~v~--~~~-----g~~~~~~~d~lvlAtG 185 (507)
........ -....+...+.+...+.|++++.+++..+. .....+. ..+ |+..++.+|.||.|+|
T Consensus 78 ~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG 157 (398)
T TIGR02028 78 GRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADG 157 (398)
T ss_pred ccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCC
Confidence 10000000 001223334455566789999888754431 1223333 222 4446899999999999
Q ss_pred CCC
Q 010573 186 SDV 188 (507)
Q Consensus 186 ~~p 188 (507)
...
T Consensus 158 ~~S 160 (398)
T TIGR02028 158 ANS 160 (398)
T ss_pred cch
Confidence 876
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.5e-08 Score=96.69 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+...+.+.+++.|++++.+++|++++.+++.+.+.+.+..+.++.++.+|.||+|+|...
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 4556677888889999999999999987777776655421110124789999999999653
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=95.17 Aligned_cols=41 Identities=41% Similarity=0.699 Sum_probs=37.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
.++||+||||||||++||+.|++.|++|+|+||+..+||..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 46899999999999999999999999999999998887553
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.1e-09 Score=104.04 Aligned_cols=145 Identities=22% Similarity=0.267 Sum_probs=77.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHH-HHhhhhhCCccc--Cccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE-AMHSFASHGVKF--SSVE 118 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~g~~~--~~~~ 118 (507)
.+|||+||||||||.+||+.|++.|++|+|+||.+.+|......+.+....+......... +.......-+.. ....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 3589999999999999999999999999999998888864333221111111000000000 000000000000 0000
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCCceEEEEeCeEEEccCCCC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
+.... ....--....+.+++.+..++.|++++.++ +..+ +...+.+....+. .++.++.+|.|+|...
T Consensus 82 ~~~~~-~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPV-GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD-DEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCC-CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-EEEEcCEEEECCCcch
Confidence 00000 000000012334456677788899999875 3322 3333333332221 7899999999999865
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-08 Score=97.35 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
...+...+.+.+++.|++++++++++++..+++.+. +.+.+..++....+.++.||+|+|--..
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 346777888899999999999999999988877765 6665455566668899999999996554
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.3e-08 Score=96.07 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+.+.+.+.+++.|++++.+++|+.++.+++++.+.+. ++ ++.+|.||+|+|...
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~-----~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTT-----QG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEEC-----CC-EEEeCEEEECCCcch
Confidence 467778888888999999999999999877777666543 23 799999999999865
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=93.06 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
...+.+.+.+.+++.|++++.+++|+++..+++++. |.+. +++ +.+|.||+|+|.....
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~-----~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTS-----DGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEET-----TEE-EEECEEEE--GGGHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhccccccccccc-----ccc-cccceeEeccccccee
Confidence 356778888888999999999999999999998887 7765 555 9999999999976543
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.7e-08 Score=96.01 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+.+.+++.|++++.++++++++.+++++.+++. +++++.+|.||.|.|..+..
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLD-----DGRRLEAALAIAADGAASTL 171 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEEC-----CCCEEEeCEEEEecCCCchH
Confidence 55666777788889999999999999888888877764 34579999999999998854
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=101.54 Aligned_cols=136 Identities=21% Similarity=0.284 Sum_probs=75.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHH-hhhhh-CCcccCccccChH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFAS-HGVKFSSVEVDLP 122 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~-~g~~~~~~~~~~~ 122 (507)
||+||||||||+++|..|++.|++|+|||+++..|+.+.+ ++.+ ..+.... ..... ..... ..+..........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~-~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTY-GVWD-DDLSDLG--LADCVEHVWPDVYEYRFPKQPRKLG 76 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccc-cccH-hhhhhhc--hhhHHhhcCCCceEEecCCcchhcC
Confidence 7999999999999999999999999999998777764321 1111 0110000 01111 10000 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec---CCEEEEEccCCceEEEEeCeEEEccCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d---~~~~~v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
. .+..-....+...+.+.+.+.+++++.+.+..+. .....+.+.+| .++.+|.||.|+|..+
T Consensus 77 ~--~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 77 T--AYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFGP 141 (388)
T ss_pred C--ceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCch
Confidence 0 0000001233344445556668888877665543 33455666666 6899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=100.03 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=75.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCc---
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS--- 116 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 116 (507)
....|||+||||||||+++|..|++.|++|+|+|+.+... +.+..++-...+... ...+..........+...+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~--~p~~~g~w~~~l~~l-gl~~~l~~~w~~~~v~~~~~~~ 101 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSI--WPNNYGVWVDEFEAL-GLLDCLDTTWPGAVVYIDDGKK 101 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccch--hccccchHHHHHHHC-CcHHHHHhhCCCcEEEEeCCCC
Confidence 3456899999999999999999999999999999964321 111001000000000 0000010000000000000
Q ss_pred --cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEe--cCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 117 --VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 117 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
....+..+ ....+...+.+.+...+++++.+++..+ +.....|.+++| .++.+|.||.|+|....
T Consensus 102 ~~~~~~y~~V------~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG--~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 102 KDLDRPYGRV------NRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDG--VKIQASLVLDATGFSRC 170 (447)
T ss_pred ccccCcceeE------EHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECcCCCcC
Confidence 00011000 0122333344445567899877666544 344566777777 68999999999998754
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-07 Score=98.25 Aligned_cols=56 Identities=32% Similarity=0.589 Sum_probs=49.1
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc---ccchhhhhh
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKALLH 95 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~~~~ 95 (507)
....++||||||+| +|++||..+++.|.+|+||||.+.+||+|...+ |+|.+.+..
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~~~~~~~~ 70 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWLPASPVLD 70 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEecCChHHHH
Confidence 34457999999999 899999999999999999999989999999988 788765543
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-08 Score=102.22 Aligned_cols=41 Identities=37% Similarity=0.644 Sum_probs=37.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
.++||||||+|.||++||+.+++.|.+|+||||....||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 46899999999999999999999999999999988888754
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-08 Score=100.10 Aligned_cols=36 Identities=42% Similarity=0.553 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
..+|||+||||||||.+||..|++.|++|+|+|+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 346899999999999999999999999999999964
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-07 Score=92.43 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+...+.+.+++.|++++.+++|++++.+++.+.+.+. + .++.+|.||+|+|...
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~-----~-~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTT-----K-GSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeC-----C-CEEEeCEEEEecCcch
Confidence 45666777788899999999999999877777766543 2 3799999999999653
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=94.78 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhc-CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 257 IRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 257 ~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+.+.+.+.+.+. +++++.++.+++++.+++++.+++. +++++.+|.||.|.|.....
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQ-----QGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEc-----CCCEEecCEEEECCCcChHH
Confidence 445556666555 5999999999999877777777764 45679999999999987655
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.6e-08 Score=96.22 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+++.+.+.+.+++.|++++.++++++++.+++++.+.+. +++++.+|.||.|+|..+...
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vI~AdG~~s~~r 166 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFS-----DGTTGRYDLVVGADGLYSKVR 166 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEc-----CCCEEEcCEEEECcCCCcchh
Confidence 456677778888889999999999999887777777764 456899999999999887653
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=94.71 Aligned_cols=136 Identities=19% Similarity=0.274 Sum_probs=75.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.++||+|||||++|++||+.|++. |++|+|||+...+||.+...+......+... ...+.+.+.|+.++.. -+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~-----~a~e~LeElGV~fd~~-dg 164 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRK-----PAHLFLDELGVPYDEQ-EN 164 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCccccccccccc-----HHHHHHHHcCCCcccC-CC
Confidence 368999999999999999999986 8999999998888764332222111111111 1123356667766432 01
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHhCCcEEEEeEE-EE--ecCCEE-EEE------ccCC------ceEEEEeCeEEEc
Q 010573 121 LPAMMAQKDKAVSNLTR-GIEGLFKKNKVTYVKGYG-KF--ISPSEV-SVD------TIEG------GNTVVKGKNIIIA 183 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~--~d~~~~-~v~------~~~g------~~~~~~~d~lvlA 183 (507)
+... .+. ..+.. ......++.+++++.+.. .. .+...+ -+. ..++ +...+.++++|+|
T Consensus 165 y~vv-~ha----~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlA 239 (357)
T PLN02661 165 YVVI-KHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSS 239 (357)
T ss_pred eeEe-cch----HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEc
Confidence 0000 010 11111 222344567899888743 22 222221 111 1111 1246899999999
Q ss_pred cCCCC
Q 010573 184 TGSDV 188 (507)
Q Consensus 184 tG~~p 188 (507)
||...
T Consensus 240 TGh~g 244 (357)
T PLN02661 240 CGHDG 244 (357)
T ss_pred CCCCC
Confidence 99654
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.7e-08 Score=96.08 Aligned_cols=57 Identities=16% Similarity=0.298 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..++.+.+.+.+++.|++++.++.+++++.+++.+.+++ ++.++.+|.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~------~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET------SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE------CCcEEEcCEEEECCCCcc
Confidence 356777888888899999999999999977666666554 234789999999999754
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.7e-08 Score=97.88 Aligned_cols=39 Identities=33% Similarity=0.523 Sum_probs=35.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG 80 (507)
.+|||+||||||||++||+.|++.|++|+|+||.+.+|.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~ 42 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGA 42 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCC
Confidence 359999999999999999999999999999999876654
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-08 Score=99.49 Aligned_cols=39 Identities=49% Similarity=0.605 Sum_probs=35.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
..++||||||||.||+.||..++++|.+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 456899999999999999999999999999999976554
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-09 Score=105.11 Aligned_cols=138 Identities=28% Similarity=0.344 Sum_probs=41.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhh----hhhHHHHHHHhhhhhCCcccCccccC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALL----HSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
||||||||+||++||+.+++.|++|+|||+.+.+||.....+..+..... .....+..+.+.+...+-........
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 89999999999999999999999999999999999987665543322111 12222333333332211100000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCE---EEEEccCCceEEEEeCeEEEccCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSE---VSVDTIEGGNTVVKGKNIIIATGS 186 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~---~~v~~~~g~~~~~~~d~lvlAtG~ 186 (507)
+..... -....+...+.+++.+.+++++.++ +..+ +..+ +.+....| ..++.++.+|-|||-
T Consensus 81 ~~~~~~---~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVP---FDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cccccc---ccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 100000 0012223345566777899998885 3332 3222 22333333 688999999999994
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=98.99 Aligned_cols=125 Identities=26% Similarity=0.452 Sum_probs=71.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEe-cCCCCCceeccccccchhhhhhhhHHHHHHHh-------hhhhCCc----
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIE-KRGALGGTCLNVGCIPSKALLHSSHMYHEAMH-------SFASHGV---- 112 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie-~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~g~---- 112 (507)
||+|||||.||..||+.+++.|.+|+|+. +.+.+| ..+|.|+..-....+...++.. .....++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~----~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIG----EMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT------SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccc----cccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc
Confidence 79999999999999999999999999993 333333 3456554322222222222211 1111122
Q ss_pred -------ccCcc--ccChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEec--CC-EEEEEccCCceEEEEeCe
Q 010573 113 -------KFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFIS--PS-EVSVDTIEGGNTVVKGKN 179 (507)
Q Consensus 113 -------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~d--~~-~~~v~~~~g~~~~~~~d~ 179 (507)
....+ .+|- ..+...+.+.+++ .+++++.+++..+. .. -.-|.+.+| ..+.+|.
T Consensus 77 lN~skGpav~a~r~qvDr-----------~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--~~~~a~~ 143 (392)
T PF01134_consen 77 LNRSKGPAVHALRAQVDR-----------DKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--EEIEADA 143 (392)
T ss_dssp ESTTS-GGCTEEEEEE-H-----------HHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--EEEEECE
T ss_pred ccccCCCCccchHhhccH-----------HHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--CEEecCE
Confidence 11111 1221 2233344455554 68999988876652 33 345677787 7899999
Q ss_pred EEEccCC
Q 010573 180 IIIATGS 186 (507)
Q Consensus 180 lvlAtG~ 186 (507)
+|+|||.
T Consensus 144 vVlaTGt 150 (392)
T PF01134_consen 144 VVLATGT 150 (392)
T ss_dssp EEE-TTT
T ss_pred EEEeccc
Confidence 9999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-07 Score=94.52 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
..+...+.+.+++.|++++.+++++++..+++.+. +.+. ..++....+.++.||+|+|-.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~-~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAG-SAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEE-ccCCceEEEECCEEEECCCCC
Confidence 45677788888899999999999999987666554 4332 123345678999999999843
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=95.48 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
.+|||+||||||||++||+.|++.|++|+||||.+.+|
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 45999999999999999999999999999999976554
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=100.84 Aligned_cols=140 Identities=22% Similarity=0.321 Sum_probs=76.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHH-------hhhhhCCcccCc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-------HSFASHGVKFSS 116 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~g~~~~~ 116 (507)
|||+|||||+||+.||..+++.|.+|+|+|++...+|.| +|.|+..-.....+.+.+. ......++.+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~---~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC---SCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC---CccccccccccchhhhhhhcccchHHHHHHhhceehee
Confidence 699999999999999999999999999999965444433 3444332211221111110 000111111110
Q ss_pred cccChHH-H-HHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEe--c--CCEEEEEccCCceEEEEeCeEEEccCCCC
Q 010573 117 VEVDLPA-M-MAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFI--S--PSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 117 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
....... . ..+..-....+...+.+.+++. +++++.+.+..+ + .....|.+.+| ..+.+|.||+|||...
T Consensus 78 ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G--~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 78 LNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDG--LKFRAKAVIITTGTFL 154 (617)
T ss_pred cccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCC--CEEECCEEEEccCccc
Confidence 0000000 0 0000000122334444555555 889988876554 2 23345667777 5899999999999764
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-07 Score=92.13 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=80.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc---c--------CCCC-----CHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPSM-----DGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------~~~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + .|.+ +.++...+.+.+++.|+++++ +.++
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997651 1 1222 257778888889999999998 8999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.++.+++.+.+++. ++.++.+|.+|+|+|.+|+...
T Consensus 81 ~v~~~~~~~~v~~~-----~~~~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 81 KVDLSDRPFKVKTG-----DGKEYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEecCCeeEEEeC-----CCCEEEeCEEEECCCCCcccCC
Confidence 99877766666653 3468999999999999987654
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-07 Score=95.41 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 257 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+.+.+.+.+.+.|++++.++++++++.+++++.+++... ++++++.+|.||.|.|....
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~--~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGP--AGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeC--CCeEEEEeCEEEECCCCchH
Confidence 455677777888999999999999988888888777432 24568999999999997753
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=90.90 Aligned_cols=99 Identities=18% Similarity=0.328 Sum_probs=82.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCC-------------------------------------C---
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-------------------------------------D--- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-------------------------------------d--- 254 (507)
..|+|||+|+.|+-+|..+++.|.+|+++++.+.+.+.+ +
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 469999999999999999999999999999888764210 0
Q ss_pred ---------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 010573 255 ---------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307 (507)
Q Consensus 255 ---------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~ 307 (507)
..+.+.+.+.+++.||+++++++|.+++.++.+..+.+. +++++.||.
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~-----~g~~i~~d~ 158 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTS-----SGETVKCDS 158 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcC-----CCCEEEccE
Confidence 356677788999999999999999999988877777764 556899999
Q ss_pred EEEeec--CCCCC
Q 010573 308 VLVSAG--RTPFT 318 (507)
Q Consensus 308 vi~a~G--~~p~~ 318 (507)
+|+|+| ..|.+
T Consensus 159 lilAtGG~S~P~l 171 (408)
T COG2081 159 LILATGGKSWPKL 171 (408)
T ss_pred EEEecCCcCCCCC
Confidence 999999 55543
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-07 Score=91.53 Aligned_cols=37 Identities=41% Similarity=0.561 Sum_probs=34.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG 80 (507)
|||+|||||++|+++|+.|++.|.+|+|+|+....+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 6999999999999999999999999999999776543
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.75 E-value=6e-08 Score=97.24 Aligned_cols=32 Identities=47% Similarity=0.725 Sum_probs=31.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
|||+||||||||+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999996
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-08 Score=98.96 Aligned_cols=144 Identities=17% Similarity=0.235 Sum_probs=77.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhh--hhhhhHHHHHHHhhhhhCC-cccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA--LLHSSHMYHEAMHSFASHG-VKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 119 (507)
.+||+||||||+|+++|..|++.|++|+|||+.+.....-....++.... ++.....+..+........ ..+....+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 48999999999999999999999999999999764210001111222211 1111111222211000000 00000001
Q ss_pred ChHHHHH---HH-HHHHHHHHHHHHHHHHhCCcEEEEeE-EEE--ecCCEEEEEccCCceEEEEeCeEEEccCCCC
Q 010573 120 DLPAMMA---QK-DKAVSNLTRGIEGLFKKNKVTYVKGY-GKF--ISPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 120 ~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
++..+.. .. .-....+...+.+.+++.+++++.+. +.. .+.+.+.+.+.+| .++.+|+||.|.|...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~a~~vVgADG~~S 156 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDG--RTLRAQYLVGCDGGRS 156 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCC--CEEEeCEEEEecCCCC
Confidence 1100000 00 00012233445556667789988774 333 3556677777666 5799999999999876
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.3e-07 Score=90.17 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+.+.|++++.+++|++++.+++++.++.. ++ ++.+|.||+|+|...
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-----~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTA-----DG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeC-----CC-EEEeeEEEEecCcch
Confidence 345555666777889999999999999887777666643 33 789999999999753
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-07 Score=92.93 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+.+.+++.|++++.++++++++.+++++.+++. +++++.+|.||.|.|.....
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-----~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLA-----DGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEeCEEEEecCCCchh
Confidence 34556666777789999999999999888888887765 45689999999999987654
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-07 Score=91.64 Aligned_cols=49 Identities=22% Similarity=0.370 Sum_probs=40.6
Q ss_pred HhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 266 ~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+..|++++.++++++++.+++.+.+++. +++++.+|.||.|.|..+...
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~~~~~v~~~-----~g~~~~a~~vI~AdG~~S~vr 170 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDDDGAQVTLA-----NGRRLTARLLVAADSRFSATR 170 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcCCeEEEEEc-----CCCEEEeCEEEEeCCCCchhh
Confidence 4579999999999999887777777764 456899999999999887653
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.3e-07 Score=91.04 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+.+.+.+.|++++.+++++.++.+++.+.+++. ++.++.+|.||.|.|..+..
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLS-----DGSVLEARLLVAADGARSKL 169 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEEC-----CCCEEEeCEEEEcCCCChHH
Confidence 56667777778889999999999999888888877764 45679999999999987654
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-07 Score=94.02 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHhcCCeeEEEcccCcc--C-CCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEc--CC-e-EE-EEEee
Q 010573 223 GYIGLEMGSVWARLGSEVTVVEFAADI--V-PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS--GD-G-VK-LTLEP 294 (507)
Q Consensus 223 G~~g~e~A~~l~~~g~~Vtlv~~~~~~--~-~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~--~~-~-v~-v~~~~ 294 (507)
=.++.|+...+.++=..+.-+.....+ . ..-.+.+...+.+.++++||+|+++++|+++..+ ++ + ++ +.+..
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~ 270 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR 270 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe
Confidence 367888888887762222111111111 0 1122577888999999999999999999999874 22 2 22 44432
Q ss_pred -cCCCceEEEEcCEEEEeecCCCCCC
Q 010573 295 -AAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 295 -~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
...+.-...+.|.||+++|.-....
T Consensus 271 ~~~~~~I~l~~~DlVivTnGs~t~ns 296 (576)
T PRK13977 271 NGKEETIDLTEDDLVFVTNGSITESS 296 (576)
T ss_pred CCceeEEEecCCCEEEEeCCcCcccc
Confidence 1111123457999999999655443
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-07 Score=90.87 Aligned_cols=57 Identities=32% Similarity=0.508 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
++...+.+.+.++|++++++++|+.++..++++. +.+. +|+.+ ++|+.||.|.|...
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~---~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTS---NGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEec---CCcEE-EEeeEEEECCchhH
Confidence 4566677777888999999999999999888533 4433 23333 99999999999654
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.4e-07 Score=90.77 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhc-CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+.+.+.+. |++++.++++++++.+++.+.+++. +++++.+|+||-|.|.....
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-----~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLK-----DGSMLTARLVVGADGANSWL 170 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEc-----CCCEEEeeEEEEeCCCCcHH
Confidence 4555666666664 8999999999999888888888875 45689999999999987654
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-06 Score=88.61 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+...+.+.+++.|++++.+++|++++.+++.+. ++. ++.++.+|.||+|+|...
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t------~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQT------GGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEe------CCcEEeCCEEEECCCcch
Confidence 4566677788889999999999999987766654 433 234789999999999654
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=93.30 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=45.3
Q ss_pred HHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 257 IRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 257 ~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+.+.+.+.+.+ .|+++++++++++++.+++++.+++.+ ++...++.+|+||.|.|.....
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~--~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEI--EGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEcc--CCcceEEeeeEEEEeCCCCchh
Confidence 44555565555 489999999999998888888887752 2233579999999999987754
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8e-07 Score=93.27 Aligned_cols=61 Identities=26% Similarity=0.345 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhc-CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+.+.+.+. ++++++++++++++.+++++.+++.+. + ...++.+|.||.|.|.....
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~-~-g~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETP-D-GPYTLEADWVIACDGARSPL 187 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECC-C-CcEEEEeCEEEECCCCCcHH
Confidence 3445566666654 799999999999998888887776531 1 22479999999999988754
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.3e-07 Score=79.99 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=67.7
Q ss_pred EEECCChHHHHHHHHHHHC-----CCcEEEEecCCCCC-ceeccccc-------cchhhhhhhhHHH-HHHHhhhhhCCc
Q 010573 47 VVIGGGPGGYVAAIKAAQL-----GLKTTCIEKRGALG-GTCLNVGC-------IPSKALLHSSHMY-HEAMHSFASHGV 112 (507)
Q Consensus 47 vIIG~G~aGl~aA~~l~~~-----g~~V~lie~~~~~G-G~~~~~~~-------~p~~~~~~~~~~~-~~~~~~~~~~g~ 112 (507)
+|||+|++|++++.+|.+. ..+|+|||+++. | |....... .|...+....... ..+.+++...+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999987 468999999544 5 42221111 1222111111000 112222222221
Q ss_pred ----ccCccccChHHHHHHHHHHHHHHHHHHHHHHH--hCC--cEEEEeEEEEe--cCCEEEEEccCCceEEEEeCeEEE
Q 010573 113 ----KFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFK--KNK--VTYVKGYGKFI--SPSEVSVDTIEGGNTVVKGKNIII 182 (507)
Q Consensus 113 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--v~~~~~~~~~~--d~~~~~v~~~~g~~~~~~~d~lvl 182 (507)
......+.-+.+ +.+.+...+....+ ..+ |.++..++..+ ..+...+.+.+| ..+.+|+|||
T Consensus 80 ~~~~~~~~~~f~pR~~------~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~d~VvL 151 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRAL------FGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADG--QSIRADAVVL 151 (156)
T ss_pred ccccccccccCCCHHH------HHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCC--CEEEeCEEEE
Confidence 111111111111 11222222223222 234 45555666554 345567777888 7789999999
Q ss_pred ccCC
Q 010573 183 ATGS 186 (507)
Q Consensus 183 AtG~ 186 (507)
|||.
T Consensus 152 a~Gh 155 (156)
T PF13454_consen 152 ATGH 155 (156)
T ss_pred CCCC
Confidence 9995
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.1e-07 Score=92.86 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+..++.|++++.+++|+++..+++.+.+++.+..+++..++.++.||.|+|...
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 44555566667888999999999999987777676766543344456899999999999754
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=96.03 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=73.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCc-ccc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS-VEV 119 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 119 (507)
...|||+||||||||+++|..|++.|++|+|||+...+...+..+ ...+.... .............+...+ ...
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW----~~~l~~lg-l~~~i~~~w~~~~v~~~~~~~~ 180 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVW----EDEFKDLG-LEDCIEHVWRDTIVYLDDDKPI 180 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccc----hhHHHhcC-cHHHHHhhcCCcEEEecCCcee
Confidence 346999999999999999999999999999999864443222111 11110000 000001100100000000 000
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec--CCEEE-EEccCCceEEEEeCeEEEccCCCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVS-VDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d--~~~~~-v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
.... .+..-....+.+.+.+...+.+++++...+..+. .+... +...+| .++.++.||.|+|...
T Consensus 181 ~~~~--~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG--~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 181 MIGR--AYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDG--RVIPCRLATVASGAAS 248 (529)
T ss_pred eccC--cccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCC--cEEECCEEEECCCcCh
Confidence 0000 0000001223344444556678998766665553 23333 344555 6799999999999765
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=98.43 Aligned_cols=147 Identities=24% Similarity=0.303 Sum_probs=84.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc-ccc-------chh--------h------------h
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV-GCI-------PSK--------A------------L 93 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~-~~~-------p~~--------~------------~ 93 (507)
.++||||||+|.||++||+.+++.|.+|+||||....+|.+... |.+ +.. . +
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 46899999999999999999999999999999977665543222 111 100 0 0
Q ss_pred hhhhHHHHHHHhhhhhCCcccCccc---cChHHHHHH----------------HHHHHHHHHHHHHHHHHhCCcEEEEeE
Q 010573 94 LHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQ----------------KDKAVSNLTRGIEGLFKKNKVTYVKGY 154 (507)
Q Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~ 154 (507)
...........+++..+|+++.... +.......+ .+..-..+...+.+...+.+++++.+.
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~ 187 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY 187 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence 0111112234456677788763210 000000000 001123344445555666799998874
Q ss_pred -EEE-e--cCCEEE-E---EccCCceEEEEeCeEEEccCCCC
Q 010573 155 -GKF-I--SPSEVS-V---DTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 155 -~~~-~--d~~~~~-v---~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
+.. + +...+. + ...+|+...+.++.||||||+-.
T Consensus 188 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 188 FALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred EEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 333 2 222221 2 33466667889999999999754
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-06 Score=91.46 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+.+.+.+ .|+++++++++++++.+++++.+++++. +|+.+++.+|.||.|.|.....
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~-~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDA-DGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcC-CCCEEEEEEEEEEecCCCchhH
Confidence 455566666665 4999999999999998888888887532 3344689999999999976543
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.1e-08 Score=71.77 Aligned_cols=37 Identities=38% Similarity=0.581 Sum_probs=34.0
Q ss_pred EECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 48 VIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 48 IIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
|||||++|+++|+.|++.|++|+|+|+++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeE
Confidence 8999999999999999999999999999999998754
|
... |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.7e-07 Score=92.09 Aligned_cols=45 Identities=42% Similarity=0.611 Sum_probs=39.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (507)
.++||||||+|.||++||+++++.|.+|+||||....||.....+
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~sg 63 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALSG 63 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccC
Confidence 468999999999999999999999999999999888887665443
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-07 Score=97.36 Aligned_cols=40 Identities=40% Similarity=0.573 Sum_probs=35.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCce
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (507)
..+||||||+|.||++||+.+++.|.+|+||||....+|.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4689999999999999999999999999999997655443
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-06 Score=87.06 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+..+...+....++.|++++.+++|+++..+++.+.+++.+.. ++..++.++.||.|+|...
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDAD-GETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-CCEEEEEecEEEECCCccH
Confidence 3455566667778899999999999999887776667665433 4446799999999999654
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-07 Score=89.03 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=44.2
Q ss_pred HHHHHHHHh-cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 259 KQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 259 ~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
..+.+.+.+ .|++++.++++++++.+++++.+++. ++.++.+|+||.|.|..+..-
T Consensus 114 ~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~-----~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 114 LGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLE-----SGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred HHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEEC-----CCCEEEeeEEEEecCCCchhH
Confidence 344444433 47999999999999888888888875 456899999999999987653
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-08 Score=85.51 Aligned_cols=45 Identities=38% Similarity=0.658 Sum_probs=38.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGC 87 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~ 87 (507)
..||+||||||+||+||++|++.|++|+|+|++-.+||-.+--|.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGm 74 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGM 74 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccccccc
Confidence 469999999999999999999999999999998888765443333
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-06 Score=88.69 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+....+++|++++.+++|+.+..+++++. +++.+..++++.++.+|.||.|+|...
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 34555566677889999999999999987766654 555443344456899999999999654
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.2e-07 Score=91.02 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcC-cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~G-v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
++.+.+.+.+.+.+ |+++.+++|+.++.+++.+.+++.. +++++.+|+||-|-|.....
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~----dG~~~~a~llVgADG~~S~v 164 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF----DGETLDADLLVGADGANSAV 164 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcC----CCcEEecCEEEECCCCchHH
Confidence 56777788887665 9999999999999988888887752 34599999999999977643
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=88.77 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
..+...+.+.+++.|++++.++.|++++. ++.+.+++. ++ ++.+|.||+|+|..
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~-----~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTP-----DG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeC-----Cc-EEECCEEEEccccc
Confidence 35567777888899999999999999975 344445432 33 68999999999854
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=88.34 Aligned_cols=56 Identities=14% Similarity=0.315 Sum_probs=43.4
Q ss_pred HHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 258 RKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 258 ~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
...+.+.+.+ .|++++.++++++++.+++.+.+++. +++++.+|+||.|.|.....
T Consensus 114 ~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 114 QLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLD-----NGQALTAKLVVGADGANSWL 170 (405)
T ss_pred HHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEEC-----CCCEEEeCEEEEeCCCCChh
Confidence 3344455544 48999999999999887888888875 45689999999999987654
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.5e-06 Score=91.23 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=47.3
Q ss_pred HHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 257 IRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 257 ~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+...+.+.+++ .|+++++++.+++++.+++++.+++.+..+++..++.+|.||.|.|....
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 44555666554 58999999999999988888888876545555568999999999997653
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.5e-07 Score=91.55 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC--ceeccccccc-hhhhhhhhHHHHHHHhh---hhh------C
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--GTCLNVGCIP-SKALLHSSHMYHEAMHS---FAS------H 110 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G--G~~~~~~~~p-~~~~~~~~~~~~~~~~~---~~~------~ 110 (507)
.+||+||||||+|+++|..|++.|.+|+||||.+... |.+. +..| +..++.....+..+... ... .
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~--~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g 82 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRAD--ALNARTLQLLELVDLFDELYPLGKPCNTSSVWANG 82 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccce--EeCHHHHHHHHhcChHHHHHhhCccceeEEEecCC
Confidence 4899999999999999999999999999999976542 2221 0111 11111111111111110 000 0
Q ss_pred C-cc-----cCccc-cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEE--ecCCEEEEEccCCceEEEEeCeE
Q 010573 111 G-VK-----FSSVE-VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKF--ISPSEVSVDTIEGGNTVVKGKNI 180 (507)
Q Consensus 111 g-~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~d~~~~~v~~~~g~~~~~~~d~l 180 (507)
. +. +.... .......... ...+...+.+.+.+.++++..+. +.. .+.+.+.+.+.+| .++.+++|
T Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~---q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g--~~v~a~~v 157 (487)
T PRK07190 83 KFISRQSSWWEELEGCLHKHFLMLG---QSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNG--ERIQSRYV 157 (487)
T ss_pred ceEeeccccCccCCcCCCCceEecC---HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCC--cEEEeCEE
Confidence 0 00 00000 0000000000 01223334455566799998874 433 3455666666666 58999999
Q ss_pred EEccCCCC
Q 010573 181 IIATGSDV 188 (507)
Q Consensus 181 vlAtG~~p 188 (507)
|.|+|.+.
T Consensus 158 VgADG~~S 165 (487)
T PRK07190 158 IGADGSRS 165 (487)
T ss_pred EECCCCCH
Confidence 99999865
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.3e-08 Score=95.12 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=75.0
Q ss_pred cEEEECCChHHHHHHHHH--HHCCCcEEEEecCCCC--CceeccccccchhhhhhhhHHHHHHH-hhhhhCCcccCcccc
Q 010573 45 DVVVIGGGPGGYVAAIKA--AQLGLKTTCIEKRGAL--GGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEV 119 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l--~~~g~~V~lie~~~~~--GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~ 119 (507)
||+||||||||+++|.+| ++.|.+|+|||++... ...+. + |.-...+.. +.... .......+.......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~t-W-~~~~~~~~~----~~~~v~~~w~~~~v~~~~~~~ 74 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRT-W-CFWEKDLGP----LDSLVSHRWSGWRVYFPDGSR 74 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcc-c-ccccccccc----hHHHHheecCceEEEeCCCce
Confidence 899999999999999999 7779999999997766 44331 1 111110000 11111 111111111111000
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCC--EEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~--~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
.... ..+..-....+...+.+.++..++.++...+..++.. ...+.+.+| .++.++.||-|+|..+.
T Consensus 75 ~~~~-~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 75 ILID-YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSSP 143 (374)
T ss_pred EEcc-cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCcccc
Confidence 0000 0000000123334444555556777777777666433 457778888 68999999999996543
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-08 Score=87.71 Aligned_cols=45 Identities=40% Similarity=0.597 Sum_probs=34.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (507)
.++||+||||||+|++||+.|++.|++|+++|++..+||....-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg 60 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG 60 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc
Confidence 358999999999999999999999999999999888886543333
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=92.54 Aligned_cols=37 Identities=35% Similarity=0.627 Sum_probs=33.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
..+||+|||||++|+++|..|++.|.+|+|||+.+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 3589999999999999999999999999999997644
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=87.72 Aligned_cols=57 Identities=23% Similarity=0.437 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcC-cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~G-v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+.+.+++.| ++++ +.++++++.+++++.+++. ++.++.+|.||.|.|.....
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~vI~adG~~S~v 169 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLA-----DGQVLRADLVVGADGAHSWV 169 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEEC-----CCCEEEeeEEEEeCCCCchH
Confidence 45566767777777 9998 9999999877778777764 34579999999999987643
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-06 Score=88.13 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhc-CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 257 IRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 257 ~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+.+.+.+.+++. |++++.++.+++++.+++++.+++. +++++.+|.||.|.|.....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLA-----DGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEEC-----CCCEEEeCEEEEeCCCCchh
Confidence 445556666665 9999999999999877777777764 34589999999999988754
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=88.40 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 257 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+.+.+.+.+. .|+++++++++++++.+++++.++++ +++++.+|+||.|.|.....-
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFE-----RGTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEEC-----CCCEEEeCEEEECCCCCccch
Confidence 3334444443 47999999999999988888888775 456789999999999877654
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.6e-07 Score=94.57 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=83.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc-ccc-------chh--------------------hh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV-GCI-------PSK--------------------AL 93 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~-~~~-------p~~--------------------~~ 93 (507)
.++||||||+|.||++||+++++.|.+|+|+||....+|.+... |.+ +.. .+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 35899999999999999999999999999999976655433221 111 100 00
Q ss_pred hhhhHHHHHHHhhhhhCCcccCccc---cChHHHHHH---------------HHHHHHHHHHHHHHHHHhCCcEEEEeE-
Q 010573 94 LHSSHMYHEAMHSFASHGVKFSSVE---VDLPAMMAQ---------------KDKAVSNLTRGIEGLFKKNKVTYVKGY- 154 (507)
Q Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~~- 154 (507)
...........+++..+|+++.... +.......+ .+..-..+...+.+...+.+++++.+.
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~ 165 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY 165 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcE
Confidence 1111112244456677788764210 000000000 001122334444444556789888774
Q ss_pred EEE-e-c-CCEEE-E---EccCCceEEEEeCeEEEccCCCC
Q 010573 155 GKF-I-S-PSEVS-V---DTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 155 ~~~-~-d-~~~~~-v---~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
+.. + + ...+. + ...+|+...+.++.||||||.-.
T Consensus 166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 333 2 3 22221 1 23466567889999999999754
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=94.04 Aligned_cols=40 Identities=38% Similarity=0.564 Sum_probs=36.2
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCCCceecc
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~ 84 (507)
||||||+|.||++||++|++.| .+|+||||.+..||....
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~ 41 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAI 41 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccc
Confidence 7999999999999999999999 999999998887766543
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=91.69 Aligned_cols=45 Identities=42% Similarity=0.695 Sum_probs=40.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (507)
.++||+|||+|.+|++||..+++.|.+|+||||....||++...+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~ 49 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSG 49 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceec
Confidence 368999999999999999999999999999999888899876554
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.6e-06 Score=88.08 Aligned_cols=54 Identities=39% Similarity=0.572 Sum_probs=46.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc---ccchhhh
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIPSKAL 93 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~~p~~~~ 93 (507)
+..++||+|||+|.+|++||+.|++.|.+|+||||....||++.+.+ |+|...+
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~ 61 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSL 61 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchh
Confidence 44578999999999999999999999999999999889999988766 5665543
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-06 Score=86.70 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcC-cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~G-v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+.+.+.+.| ++++.+++|++++.+++++.++++ +++++.+|.||.|.|.....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLD-----DGQQLRARLLVGADGANSKV 165 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEEC-----CCCEEEeeEEEEeCCCCCHH
Confidence 45566777777777 999999999999887888777764 45579999999999987543
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.5e-07 Score=94.25 Aligned_cols=43 Identities=33% Similarity=0.604 Sum_probs=38.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC--CCCceec
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--ALGGTCL 83 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~--~~GG~~~ 83 (507)
..++||||||+|.||++||..+++.|.+|+||||.+ ..||...
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 356899999999999999999999999999999988 6777653
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.6e-07 Score=87.95 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
+|||+||||||||+++|..|++. ++|+|+|+.+..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 48999999999999999999999 999999997643
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-06 Score=86.21 Aligned_cols=62 Identities=27% Similarity=0.436 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~G-v~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+.+.+.+.+++.| ++++++++|+.++.++++ +.+++.+..+++..++.++.||+|.|...
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 356677777788776 899999999999875554 66655432233334699999999999764
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=86.63 Aligned_cols=57 Identities=9% Similarity=0.230 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhc-CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
++.+.+.+.+.+. +++++.+++++++..+++++.+++. ++ ++.+|+||.|.|.....
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~-----~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFD-----DK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEc-----CC-EEeeCEEEEeCCCCchh
Confidence 5566677766665 4999999999999888888888774 33 89999999999988765
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.7e-06 Score=84.28 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++++++|++++.++ +.+.+++.+..++++.++.+|.||+|+|...
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence 4567778888888999999999999998754 3566655433333445799999999999654
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-06 Score=86.42 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHHHHHHh-cC-cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 257 IRKQFQRSLEK-QK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 257 ~~~~~~~~l~~-~G-v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+.+.+.+.+.+ .| ..+++++++++++.+++++.+.+.+..+++++++.+|+||-|.|.....
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAV 167 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHH
Confidence 44455555544 35 5799999999998777776777665444556789999999999987654
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-06 Score=92.69 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+...+.|++++.++.++++..+ ++.+. +.+.+..++....+.++.||+|+|-..
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 456666777777889999999999998764 34443 444333334445788999999999643
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.6e-06 Score=84.14 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHh----cC--cEEEcCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 256 EIRKQFQRSLEK----QK--MKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~----~G--v~i~~~~~v~~i~~~-~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+...+.+.+++ .| ++++++++|+.++.. ++.+.+++. ++ ++.+|.||+|+|...
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~-----~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTN-----RG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEEC-----CC-EEEeCEEEECcChhH
Confidence 566777777777 67 889999999999876 444556543 33 699999999999654
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-06 Score=87.57 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=69.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||++|+.+|..|++.|.+|+|+++.+.+.. . .+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------~----------------------------~~-- 210 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP---------G----------------------------ED-- 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC---------C----------------------------CC--
Confidence 36899999999999999999999999999999653311 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+++++.+. +..++ .+.+.+.+.+|+...+.+|.||+|+|..|.
T Consensus 211 ----------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 ----------AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 0011122345667789998874 44443 445566655554467999999999999985
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.2e-07 Score=92.95 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=33.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
++||+||||||+|+++|..|++.|++|+||||.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 379999999999999999999999999999997643
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.5e-06 Score=85.04 Aligned_cols=62 Identities=23% Similarity=0.369 Sum_probs=43.8
Q ss_pred HHHHHHHHHHH-hcCcEEEcCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 256 EIRKQFQRSLE-KQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 256 ~~~~~~~~~l~-~~Gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.+.+.+.+.+. ..|+++++++.|+.++.. ++++.+.+....+++..++.+|.||+|.|....
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchH
Confidence 45566666665 459999999999999876 666666543222222236899999999997763
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.6e-07 Score=86.21 Aligned_cols=44 Identities=30% Similarity=0.576 Sum_probs=40.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
.+..||+|||+|.+||+||..|.+.|++|+|+|.++++||.|..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEE
Confidence 45679999999999999999999999999999999999998864
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=97.34 Aligned_cols=43 Identities=42% Similarity=0.607 Sum_probs=39.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
+..+||||||+|.||++||+.+++.|.+|+|+||.+..||+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 3468999999999999999999999999999999888888654
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.8e-06 Score=83.89 Aligned_cols=61 Identities=8% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
++.+.+.+.+.+ .+++++++++++.++.+++++.+++.+.. +++++.+|+||-|.|.....
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~--~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTN--SVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCC--CCcEEecCEEEECCCccHhH
Confidence 455666666654 48999999999999887788888775322 34579999999999987654
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.5e-07 Score=88.90 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=41.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
|.+.|||+|||+|.+|+.+|..|++.|++|+++|+++..||.+..
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccc
Confidence 456799999999999999999999999999999999999997653
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.6e-07 Score=79.98 Aligned_cols=97 Identities=29% Similarity=0.393 Sum_probs=67.8
Q ss_pred EEEcCcHHHHHHHHHHHhcCCe-eEEEcccCccCC--------------C-C-------C--------------------
Q 010573 218 VVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVP--------------S-M-------D-------------------- 254 (507)
Q Consensus 218 vVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~--------------~-~-------d-------------------- 254 (507)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. . + +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998755420 0 0 0
Q ss_pred -HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC--CCCCC
Q 010573 255 -GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR--TPFTA 319 (507)
Q Consensus 255 -~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~ 319 (507)
+++.+.+++..++.+++++++++|++++.++++..+++. +++++.+|.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~-----~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTR-----DGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEET-----TS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEE-----ecceeeeeeEEEeeeccCCCCcc
Confidence 245567778888889999999999999999888888875 4468999999999996 55544
|
... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.7e-06 Score=83.68 Aligned_cols=106 Identities=25% Similarity=0.277 Sum_probs=80.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC------------------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------ 251 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------ 251 (507)
.++|+|||+|++|+-+|..+.+.|.+|+++++++.+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 58899999999999999999999999999998654310
Q ss_pred ---CC---------------CHHHHHHHHHHHHhcCcE--EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 010573 252 ---SM---------------DGEIRKQFQRSLEKQKMK--FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311 (507)
Q Consensus 252 ---~~---------------d~~~~~~~~~~l~~~Gv~--i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a 311 (507)
.. ..++.+.+++..+..|+. ++++++|++++..++++.|++.+. ++...+..+|.||+|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~-~~~~~~~~~d~VIvA 168 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNS-GGFSKDEIFDAVVVC 168 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcC-CCceEEEEcCEEEEe
Confidence 00 035666677777778888 889999999988777777776532 112235789999999
Q ss_pred ec--CCCCCCC
Q 010573 312 AG--RTPFTAG 320 (507)
Q Consensus 312 ~G--~~p~~~~ 320 (507)
+| ..|+...
T Consensus 169 tG~~~~P~~P~ 179 (461)
T PLN02172 169 NGHYTEPNVAH 179 (461)
T ss_pred ccCCCCCcCCC
Confidence 99 5666543
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.4e-06 Score=86.84 Aligned_cols=99 Identities=23% Similarity=0.377 Sum_probs=68.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||++|+.+|..|++.|.+|+|+++.+.+. |. .+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il---------~~----------------------------~~-- 220 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL---------PT----------------------------ED-- 220 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC---------Cc----------------------------CC--
Confidence 3689999999999999999999999999999854321 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec---CCEE-EEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEV-SVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d---~~~~-~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+|+++.+. +..++ .+.+ .+.+.+|+..++.+|.+|+|+|.+|..
T Consensus 221 ----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 221 ----------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred ----------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 0111223345667799998884 44443 2333 333456655689999999999999853
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.4e-06 Score=89.61 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+...+.+.+++ |++++.+++|+.++..++++.+.+. ++..+.+|.||+|+|....
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~-----~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFA-----GGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEEC-----CCcEEECCEEEECCCCCcc
Confidence 4566777777777 9999999999999877777776543 4456789999999997643
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.3e-07 Score=88.00 Aligned_cols=96 Identities=22% Similarity=0.372 Sum_probs=66.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC---------------CC--------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------------MD-------------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---------------~d-------------------------- 254 (507)
+|+|||+|++|+-+|..+++.|.+|.++++.+++... .+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999999776410 00
Q ss_pred ---------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCe-EEEEEeecCCCceEEEEcC
Q 010573 255 ---------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEAD 306 (507)
Q Consensus 255 ---------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~~D 306 (507)
.++.+.+.+.+++.||+++++++|.+++.++++ +.+.+. +..++.+|
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~-----~~~~~~a~ 156 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK-----NGGEYEAD 156 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET-----TTEEEEES
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc-----CcccccCC
Confidence 345667778888999999999999999987777 667763 45799999
Q ss_pred EEEEeecCCC
Q 010573 307 VVLVSAGRTP 316 (507)
Q Consensus 307 ~vi~a~G~~p 316 (507)
.||+|+|-..
T Consensus 157 ~vILAtGG~S 166 (409)
T PF03486_consen 157 AVILATGGKS 166 (409)
T ss_dssp EEEE----SS
T ss_pred EEEEecCCCC
Confidence 9999999654
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=88.53 Aligned_cols=35 Identities=26% Similarity=0.554 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999764
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=81.00 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=31.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CC-cEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL-GL-KTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~-g~-~V~lie~~~ 76 (507)
..+||+|||||.+|+++|++|++. |. +|+|+|++.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 568999999999999999999995 85 999999964
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-07 Score=91.15 Aligned_cols=35 Identities=40% Similarity=0.689 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
|||+||||||+|+++|..|++.|++|+|||+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 79999999999999999999999999999997654
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.2e-06 Score=85.12 Aligned_cols=42 Identities=40% Similarity=0.623 Sum_probs=37.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
.++||||||+| ||++||+++++.|.+|+||||.+..||....
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~ 47 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAY 47 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceec
Confidence 36899999999 9999999999999999999998887876644
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.3e-06 Score=83.60 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=66.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||++|+.+|..+++.|.+|+|+++.+.+... ..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~--------------~~------------------------- 197 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR--------------EE------------------------- 197 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC--------------CC-------------------------
Confidence 458999999999999999999999999999996543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC--CEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~--~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+.....+.+++.+|+++.+ .+..++. ..+.+. .++ .++.+|.+|+|+|.+|.
T Consensus 198 ----------~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g--~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 198 ----------PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TED--ETYRFDALLYATGRKPN 254 (438)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECC--eEEEcCEEEEeeCCCCC
Confidence 001112235567789998877 4455543 334443 334 57999999999999985
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-07 Score=85.93 Aligned_cols=49 Identities=43% Similarity=0.707 Sum_probs=41.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC------CCcEEEEecCCCCCceeccccccc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLNVGCIP 89 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~------g~~V~lie~~~~~GG~~~~~~~~p 89 (507)
...+||+|||||||||+||++|++. +.+|+|+||...+||+.+.-.++.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGavie 128 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIE 128 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeec
Confidence 4569999999999999999999875 578999999999999877666543
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=88.40 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
+..+||+|||||++|+++|..|++.|++|+|+||.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3458999999999999999999999999999999753
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-06 Score=86.85 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEc--CCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+..+...+.+..++.|++++.++.|+++..+ ++.+. +++.+..+++..++.+|.||+|+|...
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 4466777888888999999999999998765 34443 455433333444789999999999653
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.3e-06 Score=80.81 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=31.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
+||+|||||.+|+++|++|++.|++|+|+|++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999653
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=88.20 Aligned_cols=34 Identities=35% Similarity=0.594 Sum_probs=31.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC---CCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~ 75 (507)
.++||+||||||||+++|+.|++. |++|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 358999999999999999999998 9999999994
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.3e-07 Score=88.36 Aligned_cols=37 Identities=27% Similarity=0.619 Sum_probs=34.1
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCce
Q 010573 45 DVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGT 81 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~ 81 (507)
||+|||||+||+++|..|++. |++|+|+|+.+..+|.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 799999999999999999987 9999999998877763
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.8e-06 Score=81.78 Aligned_cols=103 Identities=27% Similarity=0.462 Sum_probs=82.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCC-----------------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD----------------------------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d----------------------------------------- 254 (507)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 589999999999999999999999999998876531000
Q ss_pred ----------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcC
Q 010573 255 ----------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEAD 306 (507)
Q Consensus 255 ----------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D 306 (507)
..+.+.+.+.+++.|++++++++++.++.+++++.+.+....++..+++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 3456667777788899999999999999888898888877666666789999
Q ss_pred EEEEeecCCCCC
Q 010573 307 VVLVSAGRTPFT 318 (507)
Q Consensus 307 ~vi~a~G~~p~~ 318 (507)
+||-|.|.+...
T Consensus 163 lvVgADG~~S~v 174 (356)
T PF01494_consen 163 LVVGADGAHSKV 174 (356)
T ss_dssp EEEE-SGTT-HH
T ss_pred eeecccCcccch
Confidence 999999988754
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=86.91 Aligned_cols=35 Identities=23% Similarity=0.540 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
.+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999764
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.9e-06 Score=85.51 Aligned_cols=41 Identities=46% Similarity=0.736 Sum_probs=37.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
.++||||||+|.||++||+.+++.|.+|+|+||....||..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 46899999999999999999999999999999988888743
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=75.01 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=102.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC----------C----------------------------CCH
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------S----------------------------MDG 255 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~----------------------------~d~ 255 (507)
.-.|+|||+|+.|+-+|..+++.|.+|.++++.+.+.. . ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 35699999999999999999999999999998765310 0 012
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCC--eEE-EEEeec------CCCceEEEEcCEEEEeecCCCCCCCCCCccc
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD--GVK-LTLEPA------AGGEKTILEADVVLVSAGRTPFTAGLGLDKI 326 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~--~v~-v~~~~~------~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~ 326 (507)
++.+.+.+...+.|++++.++.+.++..+++ .+. +.+... ...+..++.++.||.|+|.......+..+..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 3445566667788999999999999876655 233 333210 0113468999999999996643321112222
Q ss_pred CceecC-----CCCeecC-------CCCCCCCCCeEEecCCC----CCCCc--HhHH-HHHHHHHHHHHcC
Q 010573 327 GVETDK-----MGRIPVN-------ERFATNIPGVYAIGDVI----PGPML--AHKA-EEDGVACVEFLAG 378 (507)
Q Consensus 327 gl~~~~-----~G~i~Vd-------~~~~t~~~~IyA~GD~a----~~~~~--~~~A-~~~g~~aa~~i~~ 378 (507)
++.... .+..+.+ ++.+--+||+|++|=.+ +.|.. ...+ ..+|+.||+.++.
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 221111 1122222 11222479999999766 23321 1222 3478888887764
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-06 Score=86.23 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=80.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc--CccC-----------C-CCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--ADIV-----------P-SMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~~-----------~-~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
...+|+|||||+.|+.+|..+++.|.+|+++... .++. + ...+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 3578999999999999999999999999998531 1111 0 134567778888888999999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+.+..+++...+++. ++..+.+|.+|+|+|..|...
T Consensus 291 ~~I~~~~~~~~v~~~-----~g~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 291 KKIETEDGLIVVTLE-----SGEVLKAKSVIVATGARWRKL 326 (515)
T ss_pred EEEEecCCeEEEEEC-----CCCEEEeCEEEECCCCCcCCC
Confidence 999876666666654 345799999999999987543
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.5e-06 Score=86.80 Aligned_cols=101 Identities=15% Similarity=0.255 Sum_probs=80.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc--Ccc--------CC----CCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--ADI--------VP----SMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~--------~~----~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
..+++|||||+.|+.+|..+++.|.+|++++.. .++ ++ ...+++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 468999999999999999999999999998643 111 01 1245778888899999999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.+...++...+.+. ++.++.+|.||+|+|.+|...
T Consensus 291 ~I~~~~~~~~V~~~-----~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 291 KLEPAAGLIEVELA-----NGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred EEEecCCeEEEEEC-----CCCEEEcCEEEECCCCCcCCC
Confidence 99876666666654 345799999999999988543
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.3e-06 Score=86.30 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
|..+...+.....+.|-+++..++|+.+..+++.+.|++.+..+|...++.++.||.|+|-..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH
Confidence 445666667777889999999999999998887445888777777888899999999999654
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.8e-07 Score=93.06 Aligned_cols=43 Identities=44% Similarity=0.590 Sum_probs=39.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
..+|+||||||++||+||..|+++|++|+|+||+..+||.+..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t 44 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRART 44 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEE
Confidence 3589999999999999999999999999999999999997754
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.2e-07 Score=89.10 Aligned_cols=137 Identities=26% Similarity=0.363 Sum_probs=77.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHH-------HHHhhhhhCCccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH-------EAMHSFASHGVKF 114 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~g~~~ 114 (507)
..|||+|||||.||..||..++|.|++++|+--+-..=| ...|.|+.--....+..+ .+-......++.+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig---~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~ 79 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG---EMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQF 79 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee---ecccccccCCcccceeEEeehhccchHHHhhhhcCCch
Confidence 359999999999999999999999999999876532212 234555221111111100 0111122233333
Q ss_pred Cccc------cChHHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEeEEEEe---cCC-EEEEEccCCceEEEEeCeEEEc
Q 010573 115 SSVE------VDLPAMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKGYGKFI---SPS-EVSVDTIEGGNTVVKGKNIIIA 183 (507)
Q Consensus 115 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~---d~~-~~~v~~~~g~~~~~~~d~lvlA 183 (507)
..+. +.-.+....+ ..+...++..+ ...+++++.+.+..+ +.+ -+-|.+.+| ..+.++.|||+
T Consensus 80 r~LN~sKGPAVra~RaQaDk----~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G--~~~~a~aVVlT 153 (621)
T COG0445 80 RMLNSSKGPAVRAPRAQADK----WLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG--PEFHAKAVVLT 153 (621)
T ss_pred hhccCCCcchhcchhhhhhH----HHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCC--CeeecCEEEEe
Confidence 2111 1111111111 11223334333 345899999877543 222 355778888 89999999999
Q ss_pred cCCC
Q 010573 184 TGSD 187 (507)
Q Consensus 184 tG~~ 187 (507)
||.-
T Consensus 154 TGTF 157 (621)
T COG0445 154 TGTF 157 (621)
T ss_pred eccc
Confidence 9963
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=86.69 Aligned_cols=33 Identities=36% Similarity=0.662 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CcEEEEecCCC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGA 77 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~ 77 (507)
||+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 7999999999999999999999 99999999754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-06 Score=86.88 Aligned_cols=38 Identities=29% Similarity=0.634 Sum_probs=34.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
+...+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 34568999999999999999999999999999999653
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=86.50 Aligned_cols=102 Identities=21% Similarity=0.340 Sum_probs=74.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCcc------CCCC-----C--HHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADI------VPSM-----D--GEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~------~~~~-----d--~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
++++|||+|+.|+.+|..|++.+ .+|+++++.+.+ ++.+ + .++.....+.+++.|++++.++.|+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 47999999999999999999886 489999988753 1111 1 1223333466778899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEE--cCEEEEeecCCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILE--ADVVLVSAGRTPFTAG 320 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~--~D~vi~a~G~~p~~~~ 320 (507)
+++.+++.+.+. +.. ++.++. +|.+|+|+|.+|+...
T Consensus 81 ~id~~~~~v~~~--~~~--~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKNKTITVK--NLK--TGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCCCEEEEE--ECC--CCCEEEecCCEEEECCCCCCCCCC
Confidence 998776665554 211 233455 9999999999987653
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.2e-05 Score=78.36 Aligned_cols=44 Identities=43% Similarity=0.591 Sum_probs=40.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (507)
++||+|||+|++|++||..+++.|++|+||||....||.+...+
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~ 59 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSA 59 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccC
Confidence 58999999999999999999999999999999888898876554
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=86.77 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=34.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
..+||+||||||+|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4589999999999999999999999999999997754
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-05 Score=73.15 Aligned_cols=165 Identities=21% Similarity=0.209 Sum_probs=101.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-------------------------------------CC-H
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------------------------------------MD-G 255 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------~d-~ 255 (507)
.-.|+|||+|+.|+-+|..+++.|.+|.++++.+.+... .+ .
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999987653110 01 2
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCC-eEE-EEEeec------CCCceEEEEcCEEEEeecCCCCCCCCCCcc--
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEPA------AGGEKTILEADVVLVSAGRTPFTAGLGLDK-- 325 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~-v~~~~~------~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~-- 325 (507)
++...+.+...+.|++++.++.+.++..+++ .+. +.+... ...+..++.++.||.|+|..........+.
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 3445566667778999999999999876544 332 322210 111346899999999999654332110010
Q ss_pred -cCceecCCCCee--------cCCCCCCCCCCeEEecCCC----CCCCc--Hh-HHHHHHHHHHHHHcCC
Q 010573 326 -IGVETDKMGRIP--------VNERFATNIPGVYAIGDVI----PGPML--AH-KAEEDGVACVEFLAGK 379 (507)
Q Consensus 326 -~gl~~~~~G~i~--------Vd~~~~t~~~~IyA~GD~a----~~~~~--~~-~A~~~g~~aa~~i~~~ 379 (507)
.+.........+ |+..-+ -.||+|++|=.+ +.|.. .. .=..+|+.||+.++.+
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~ 253 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEK 253 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHH
Confidence 111111111222 222222 379999999776 23321 11 2234788888877643
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4e-06 Score=84.26 Aligned_cols=98 Identities=10% Similarity=0.168 Sum_probs=71.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCcc---CCCCCHHHH---------HHHHHHHHhcCcEEEcCceEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADI---VPSMDGEIR---------KQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~---~~~~d~~~~---------~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
.++++|||+|+.|+.+|..|++.|. +|+++++.+.. .+.+.+.+. ..-.+.+.+.||+++.++.|+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999875 78999876543 122222211 001244667899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+..++.. +.+. +++++.+|.+|+|||.+|..
T Consensus 83 ~id~~~~~--v~~~-----~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRDTRE--LVLT-----NGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCCCE--EEEC-----CCCEEEcCEEEEccCCCCCC
Confidence 99765433 3333 45689999999999999864
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=60.79 Aligned_cols=34 Identities=47% Similarity=0.537 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
+++|||||+.|+.+|..|++.|.+|+||++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4899999999999999999999999999997654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.1e-06 Score=82.13 Aligned_cols=39 Identities=31% Similarity=0.546 Sum_probs=36.5
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceec
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCL 83 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~ 83 (507)
+++|||||++||+||++|++.+ .+|+|+|+.+++||...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 6999999999999999999998 99999999999999754
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-06 Score=89.64 Aligned_cols=44 Identities=32% Similarity=0.564 Sum_probs=40.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
....++|+|||||+|||+||.+|.+.|++|+|+|.++++||...
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeE
Confidence 34567999999999999999999999999999999999999754
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.1e-06 Score=84.51 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
+||+||||||||+++|..|++.|++|+|+|+++.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999997754
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.5e-06 Score=85.59 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=33.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
...+||+|||||++|+++|..|++.|++|+|+||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 345899999999999999999999999999999964
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.8e-05 Score=81.54 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=67.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..|++.|.+|+|+++.+.+... . .
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------~-------d-------------------------- 223 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------A-------D-------------------------- 223 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------C-------C--------------------------
Confidence 358999999999999999999999999999985533110 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccC--CceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIE--GGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~--g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+ .+..++ ...+.+...+ |+...+.+|.|++|+|.+|.
T Consensus 224 ----------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 224 ----------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred ----------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 001112234456678998877 444443 3344454433 44467999999999999986
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-06 Score=90.75 Aligned_cols=45 Identities=31% Similarity=0.560 Sum_probs=40.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
|+.++||+|||||++||+||+.|+++|++|+|+|+.+.+||.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s 45 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRT 45 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence 345679999999999999999999999999999999999998643
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.3e-06 Score=85.85 Aligned_cols=43 Identities=35% Similarity=0.584 Sum_probs=39.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (507)
++|++|||||++|+++|.+|++.|.+|+|+|+++.+||.|.+.
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 3799999999999999999999999999999999999988653
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-06 Score=84.11 Aligned_cols=36 Identities=39% Similarity=0.375 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
.||+|||||++|+.+|..|++.|++|+|||+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 379999999999999999999999999999866543
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.6e-06 Score=81.90 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
.||+|||||++|+++|..|++.|++|+|+|+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 58999999999999999999999999999997654
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.1e-05 Score=82.17 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=72.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCcc--CC-CCCHH-------HHHHH----HHHHHhcCcEEEcCceE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADI--VP-SMDGE-------IRKQF----QRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~--~~-~~d~~-------~~~~~----~~~l~~~Gv~i~~~~~v 278 (507)
++|+|||+|+.|+.+|..+++. +.+|+++++.+.+ .+ .++.- ..+.+ ....++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999887 5789999988653 11 11110 01111 22335679999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+++..+++.+.+. +..+++..++.+|.+|+|||.+|+...
T Consensus 82 ~~Id~~~~~v~~~--~~~~~~~~~~~yd~lviAtGs~~~~~~ 121 (438)
T PRK13512 82 IAINDERQTVTVL--NRKTNEQFEESYDKLILSPGASANSLG 121 (438)
T ss_pred EEEECCCCEEEEE--ECCCCcEEeeecCEEEECCCCCCCCCC
Confidence 9998776655554 322223345789999999999997653
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.1e-06 Score=81.50 Aligned_cols=100 Identities=22% Similarity=0.320 Sum_probs=75.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC------CCHHHHHHHHH------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------MDGEIRKQFQR------------------------ 263 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------~d~~~~~~~~~------------------------ 263 (507)
+.+|+|||+|+.|+.+|..|++.|.+|+++++.+...+. +.+...+.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 578999999999999999999999999999988643221 23332222221
Q ss_pred -------------------HHHh--cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 264 -------------------SLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 264 -------------------~l~~--~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.|.+ .+++++.++.+++++.+++++.+++. +++++.+|.||.|-|.....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFA-----DGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEEC-----CCCEEEeCEEEECCCCCchH
Confidence 1111 13568899999999888888888876 45689999999999987655
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-05 Score=77.75 Aligned_cols=38 Identities=42% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
.++||+|||||.+|+++|++|++.|.+|+++|++...+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 45899999999999999999999999999999966443
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.5e-06 Score=77.23 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=38.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
.....+|.|||+|.+|++||+.|.++ ++|+|+|.+.++||...
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 34557999999999999999999986 99999999999999754
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-05 Score=76.23 Aligned_cols=98 Identities=20% Similarity=0.263 Sum_probs=77.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC------------------------------------------C-
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------S- 252 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------~- 252 (507)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998754210 0
Q ss_pred ------C-CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 253 ------M-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 253 ------~-d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+ ...+.+.+.+.+++.|++++.+++++++..+++++.+.+.. ++.++.+|.||.|+|....
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRG----GEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcC----ccEEEEeCEEEECCCcchH
Confidence 1 12455667777788899999999999998777777766542 3468999999999998653
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.8e-06 Score=83.26 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=31.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC----CcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLG----LKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g----~~V~lie~~~ 76 (507)
..+||+||||||+|+++|..|++.| ++|+|+|+.+
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 3579999999999999999999986 4799999964
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-05 Score=80.50 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=77.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC---C---CCC----------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---P---SMD---------------------------------- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~---~~d---------------------------------- 254 (507)
..|+|||+|++|+-+|..|++.|.+|+++++.+... + .+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 469999999999999999999999999999865321 0 000
Q ss_pred ----------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 255 ----------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 255 ----------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
..+.+.+.+.+++.|++++.++++++++.+++++.+++. ++.++.+|.||.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~-----~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELS-----DGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEeCEEEEecCCCCCc
Confidence 123344556667779999999999999988888887764 34589999999999998754
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-06 Score=90.28 Aligned_cols=46 Identities=28% Similarity=0.528 Sum_probs=40.9
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 38 ~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
++....+||+|||||++|++||..|++.|++|+|+|+++++||.+.
T Consensus 155 ~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 155 PEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVY 200 (738)
T ss_pred CcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCcee
Confidence 3444568999999999999999999999999999999999988764
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.8e-06 Score=75.87 Aligned_cols=105 Identities=24% Similarity=0.410 Sum_probs=74.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc---CCCCCH-----------HHH--H--HHHHHHHhcCcEEEcCce
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI---VPSMDG-----------EIR--K--QFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~---~~~~d~-----------~~~--~--~~~~~l~~~Gv~i~~~~~ 277 (507)
+|+|||+|+.|+.+|..|++.+.+++++++.+.. ...+.. ... . .+.+.+...+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 5899999999999999999999999999766532 010000 011 1 344455678999999999
Q ss_pred EEEEEEcCCeEE---EEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 278 VVGVDLSGDGVK---LTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 278 v~~i~~~~~~v~---v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.++....+.+. +.+.....+++.++.+|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceee
Confidence 999987776431 1111112346789999999999999987654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.3e-06 Score=81.74 Aligned_cols=35 Identities=34% Similarity=0.356 Sum_probs=32.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
.||+|||||++|+.||+.|++.|++|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999986543
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.8e-06 Score=82.82 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=31.8
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCCC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALG 79 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~G 79 (507)
+|+|||||++|+++|..|++.| .+|+|+||.+.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 7999999999999999999998 5999999977653
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.5e-06 Score=83.88 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHH----CCCcEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQ----LGLKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~----~g~~V~lie~~~ 76 (507)
|||+||||||+|+++|..|++ .|++|+|||+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 699999999999999999998 799999999943
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=80.49 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=66.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||++|+.+|..+++.|.+|+|+++.+.+.. . .+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~---------~----------------------------~d-- 210 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP---------G----------------------------ED-- 210 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc---------c----------------------------cc--
Confidence 35899999999999999999999999999998543311 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCC--EEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~--~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..++.+ .+.+. .+++..++.+|.|++|+|.+|.
T Consensus 211 ----------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~-~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 ----------EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFE-YEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEE-ECCceEEEEeCEEEEecCCccC
Confidence 0111223455667799998874 4445433 23333 2343457999999999999885
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.5e-05 Score=72.76 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
|....|++|||||.-|+++|++|++.|.+++++|+.+
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~ 40 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFP 40 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccC
Confidence 4456899999999999999999999999999999955
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-05 Score=74.38 Aligned_cols=97 Identities=28% Similarity=0.452 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhc-CcEEEcCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCcee-cC
Q 010573 256 EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET-DK 332 (507)
Q Consensus 256 ~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~-~~ 332 (507)
.+.+.+.+.+.+. |++++++++|+.++..+++ ..|.+.+..+++..++.++.|++..|-..-. + +++.|++- ..
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~-L--Lqksgi~e~~g 258 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP-L--LQKSGIPEGKG 258 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH-H--HHHcCChhhcc
Confidence 4455556666666 9999999999999988776 7888877777788899999999999865422 2 56777642 22
Q ss_pred CCCeecC-CCCCCCCC--------CeEEecCC
Q 010573 333 MGRIPVN-ERFATNIP--------GVYAIGDV 355 (507)
Q Consensus 333 ~G~i~Vd-~~~~t~~~--------~IyA~GD~ 355 (507)
-|+..|. .+++++.| -||-.-.+
T Consensus 259 yggfPVsG~fl~~~n~~vv~~H~aKVYgka~v 290 (488)
T PF06039_consen 259 YGGFPVSGQFLRCKNPEVVAQHNAKVYGKASV 290 (488)
T ss_pred cCCCcccceEEecCCHHHHHHhcceeeeeCCC
Confidence 2444443 45666544 36665554
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-05 Score=79.85 Aligned_cols=97 Identities=24% Similarity=0.247 Sum_probs=67.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+... . .+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~-------------~-----------------------~~-- 178 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK-------------L-----------------------FD-- 178 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc-------------c-----------------------cC--
Confidence 358999999999999999999999999999985432100 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.||+++.+ .+..++.+...+.+.+| .++.+|.||+|+|.+|.
T Consensus 179 ----------~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 179 ----------EEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSG--GVYQADMVILATGIKPN 234 (427)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCC--CEEEeCEEEECCCccCC
Confidence 011122345566789998876 45555544433344566 57999999999999885
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-05 Score=75.71 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=61.4
Q ss_pred HHhcCCeeEEE-cccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEE
Q 010573 233 WARLGSEVTVV-EFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLV 310 (507)
Q Consensus 233 l~~~g~~Vtlv-~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~ 310 (507)
+...|+...++ .+.+++....-+.+.+.+.+.+++.|++++++++|..++..++.+. +.++ ++.++++|.||+
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~-----~g~~i~~~~vvl 224 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLT-----KGEEIEADYVVL 224 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEcc-----CCcEEecCEEEE
Confidence 34445544443 2345555556678889999999999999999999999988776543 4443 678999999999
Q ss_pred eecCCCCCC
Q 010573 311 SAGRTPFTA 319 (507)
Q Consensus 311 a~G~~p~~~ 319 (507)
|+|+.....
T Consensus 225 A~Grsg~dw 233 (486)
T COG2509 225 APGRSGRDW 233 (486)
T ss_pred ccCcchHHH
Confidence 999887654
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.8e-05 Score=76.56 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=71.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
-..+++|||||+.|+..|..++++|.+|+|||+.+.+- |. .
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL---------p~----~-------------------------- 212 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL---------PG----E-------------------------- 212 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC---------Cc----C--------------------------
Confidence 34679999999999999999999999999999965431 10 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
-+.+.+.+.+.+++.+++++.+. +..+. .+.+.+.++++....+.+|++++|+|-+|.
T Consensus 213 ----------D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 213 ----------DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence 01223334556666778888774 33332 233777777774447899999999999986
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=80.70 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=76.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--CCC--------C-HHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--PSM--------D-GEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~--------d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
.++++|||||+.|+.+|..|.+.+.+|+++++.+... +.+ + .++...+.+.++..+++++ ..+|++|+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i-~~~V~~Id 88 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYL-RAVVYDVD 88 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEE-EEEEEEEE
Confidence 5789999999999999999977678999999877641 111 1 2233345566667788876 46899998
Q ss_pred EcCCeEEEEEeecC---CCceEEEEcCEEEEeecCCCCCCC
Q 010573 283 LSGDGVKLTLEPAA---GGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 283 ~~~~~v~v~~~~~~---~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.+++.+.+...... +.++.++++|.+|+|+|.+|+...
T Consensus 89 ~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ 129 (424)
T PTZ00318 89 FEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN 129 (424)
T ss_pred cCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC
Confidence 77777666332110 124568999999999999987543
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3e-05 Score=82.32 Aligned_cols=38 Identities=29% Similarity=0.580 Sum_probs=34.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecCCC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGA 77 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~ 77 (507)
|...+||+||||||+|+++|..|++. |.+|+|||+.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 45578999999999999999999995 999999999753
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-06 Score=77.72 Aligned_cols=43 Identities=37% Similarity=0.552 Sum_probs=40.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (507)
++|++|||+|.+|+..|..|+++|++|.||||++.+||.|-..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccc
Confidence 4799999999999999999999999999999999999998643
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.1e-05 Score=79.39 Aligned_cols=102 Identities=24% Similarity=0.398 Sum_probs=78.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-----CC-----------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MD----------------------------------- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----~d----------------------------------- 254 (507)
..|+|||+|+.|+-+|..|++.|.+|+++++.+...+. +.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999987543100 00
Q ss_pred -----------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 -----------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 -----------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+.+.+.+.+++.|++++.++++++++.+++++.+++.+. ++ .+++.+|.||.|.|.++.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~-~g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGP-DG-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeC-Cc-cEEEEeCEEEECCCCChH
Confidence 12345556666778999999999999988888888877532 12 257999999999998774
Q ss_pred C
Q 010573 318 T 318 (507)
Q Consensus 318 ~ 318 (507)
.
T Consensus 161 v 161 (493)
T PRK08244 161 V 161 (493)
T ss_pred H
Confidence 4
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=7e-06 Score=85.37 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=32.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999964
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.3e-05 Score=77.21 Aligned_cols=97 Identities=18% Similarity=0.248 Sum_probs=68.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+... ..|
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-----~~~--------------------------------- 182 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-----LMP--------------------------------- 182 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-----hCC---------------------------------
Confidence 358999999999999999999999999999985433110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+++++.+ .+..+. ...+.+.+.+| .++.+|.+|+|+|..|.
T Consensus 183 ----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 183 ----------PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSG--RSIEVDAVIAAAGLRPN 240 (377)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCC--cEEECCEEEECcCCCcc
Confidence 001122344566778998876 344443 33455666777 68999999999999884
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.09 E-value=4e-06 Score=87.12 Aligned_cols=44 Identities=32% Similarity=0.516 Sum_probs=40.2
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~ 84 (507)
..++||+|||||++||+||++|++. |++|+|+|+++++||.+..
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITS 54 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeE
Confidence 3457999999999999999999999 9999999999999998754
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=80.09 Aligned_cols=35 Identities=40% Similarity=0.591 Sum_probs=31.1
Q ss_pred EECCChHHHHHHHHHHHCCCcEEEEecCCC--CCcee
Q 010573 48 VIGGGPGGYVAAIKAAQLGLKTTCIEKRGA--LGGTC 82 (507)
Q Consensus 48 IIG~G~aGl~aA~~l~~~g~~V~lie~~~~--~GG~~ 82 (507)
|||+|.||++||.++++.|.+|+|+||.+. .||..
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s 37 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA 37 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence 799999999999999999999999999764 46554
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-05 Score=79.10 Aligned_cols=97 Identities=25% Similarity=0.384 Sum_probs=71.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhc---CCeeEEEcccCcc--CCCCC---------HHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADI--VPSMD---------GEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~--~~~~d---------~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+|+|||||+.|+.+|..+.+. +.+|+++++.+.. .+.++ .++...+.+.+++.|++++.+ +|+.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 5789999987753 11111 223334566677889999864 78888
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.+++. +.+. +++++.+|.+|+|+|.+|+...
T Consensus 80 d~~~~~--V~~~-----~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DPDRRK--VLLA-----NRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ecccCE--EEEC-----CCCcccccEEEEccCCCCCCCC
Confidence 766553 4443 4567999999999999997654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.8e-06 Score=86.17 Aligned_cols=41 Identities=34% Similarity=0.525 Sum_probs=37.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceecc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~ 84 (507)
++|+|||||+|||+||+.|++.| ++|+|+|+++++||.+..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t 43 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEE
Confidence 37999999999999999999987 899999999999998653
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.3e-06 Score=86.04 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=38.6
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCcEEEEecCCCCCceecc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~~~~GG~~~~ 84 (507)
+||+|||||++||+||+.|++. |++|+|+|+++++||.+..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 6899999999999999999998 9999999999999998764
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.2e-05 Score=78.66 Aligned_cols=98 Identities=24% Similarity=0.320 Sum_probs=68.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+.. . .+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------~----------------------------~~-- 212 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP---------G----------------------------ED-- 212 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC---------c----------------------------CC--
Confidence 35899999999999999999999999999998654311 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccC-CceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIE-GGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~-g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+ .+..++ .+.+.+.+.+ ++...+.+|.+|+|+|.+|.
T Consensus 213 ----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 213 ----------KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 011122345566778999887 344443 2345555443 33367999999999999985
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5e-05 Score=78.11 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=68.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..+++.|.+|+|+++.+.+... ++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------------~d-- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-------------------------------------LD-- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------------------------------------CC--
Confidence 468999999999999999999999999999986543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+++++.+ .+..+. .+.+.+.+.+| .++.+|.+++|+|.+|.
T Consensus 216 ----------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 ----------DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSG--KKIKADCLLYANGRTGN 273 (461)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCC--CEEEeCEEEEeecCCcc
Confidence 001122334566778998877 344443 34555666666 57999999999999985
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.05 E-value=5e-06 Score=84.84 Aligned_cols=40 Identities=38% Similarity=0.580 Sum_probs=37.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
+|+|||||.|||+||+.|.+.|++|+|+|+++++||.+..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeee
Confidence 7999999999999999999999999999999999998753
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5e-06 Score=82.54 Aligned_cols=43 Identities=33% Similarity=0.438 Sum_probs=39.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (507)
++|+|+|||.|||+||.+|+++|++|+|+|.++.+||.|..+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~ 43 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR 43 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeee
Confidence 4799999999999999999999999999999999999886543
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.2e-05 Score=77.62 Aligned_cols=105 Identities=27% Similarity=0.268 Sum_probs=71.8
Q ss_pred cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC---------CCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---------SMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 211 ~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
...+++++|||+|+.|+++|..+++.|.+|+++++.+.+.. ..+.+......+.+.+.|++++.++.+..+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~ 94 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCG 94 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeec
Confidence 44588999999999999999999999999999998876532 123333444556667779999999888655
Q ss_pred EE----cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 010573 282 DL----SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT 318 (507)
Q Consensus 282 ~~----~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~-p~~ 318 (507)
.. +.+........ .++..+.+|.||+|+|.. |..
T Consensus 95 ~~~~~~~~~~~~~~~~~---~~~~~~~~d~lviAtGs~~~~~ 133 (352)
T PRK12770 95 EPLHEEEGDEFVERIVS---LEELVKKYDAVLIATGTWKSRK 133 (352)
T ss_pred cccccccccccccccCC---HHHHHhhCCEEEEEeCCCCCCc
Confidence 32 11111111100 012247899999999984 543
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.9e-05 Score=78.19 Aligned_cols=98 Identities=22% Similarity=0.315 Sum_probs=67.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..|++.|.+|+|+++.+.+. |. .+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l---------~~----------------------------~d-- 212 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL---------PN----------------------------ED-- 212 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC---------Cc----------------------------cC--
Confidence 3589999999999999999999999999999854321 10 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecC--CEEEEEcc--CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP--SEVSVDTI--EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~--~~~~v~~~--~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+.. ..+.+.+. +|+..++.+|.|++|+|.+|.
T Consensus 213 ----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 213 ----------AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 0011223456677899998873 444432 23334333 554467999999999999985
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=98.04 E-value=5e-06 Score=86.20 Aligned_cols=42 Identities=36% Similarity=0.493 Sum_probs=38.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (507)
.||+|||||++||+||..|++.|++|+|+|+++.+||.+...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~ 43 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF 43 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccee
Confidence 589999999999999999999999999999999999977543
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5e-06 Score=84.83 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
..+.+.+.+.+++.|++++++++|++|+.+++++.+... ++..+.+|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~-----~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEV-----DGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEe-----CCceEECCEEEECCCHH
Confidence 457777888888899999999999999877776654432 34579999999999853
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.3e-06 Score=85.95 Aligned_cols=41 Identities=37% Similarity=0.485 Sum_probs=39.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
+|++|||||.+|+++|..|+++|++|+|+||++.+||.|..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeE
Confidence 69999999999999999999999999999999999998865
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.1e-05 Score=86.63 Aligned_cols=93 Identities=24% Similarity=0.242 Sum_probs=72.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+.+|..|++.|.+||++++.+.+. | .+++++.+...+.+++.||++++++.+-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 47999999999999999999999999999999887542 2 34667777777888999999998875521
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT 318 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~-p~~ 318 (507)
.++++ +.....+|.|++|+|.. |..
T Consensus 382 -----dit~~-----~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 382 -----TATLE-----DLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred -----EEeHH-----HhccccCCEEEEeCCCCCCCc
Confidence 23332 22345799999999984 543
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.3e-05 Score=72.52 Aligned_cols=100 Identities=16% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC---cc--------CCC-----CCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA---DI--------VPS-----MDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~---~~--------~~~-----~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
..++++|||+|+.|+.+|..+.+.|.++++++... .+ ++. ..+++.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 35789999999999999999999999998886422 11 011 12345666777777778887765
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.+..++..++.+.++.. ...+.+|.||+|+|..|+..
T Consensus 84 ~v~~v~~~~~~~~v~~~------~~~~~~d~vilAtG~~~~~~ 120 (321)
T PRK10262 84 HINKVDLQNRPFRLTGD------SGEYTCDALIIATGASARYL 120 (321)
T ss_pred EEEEEEecCCeEEEEec------CCEEEECEEEECCCCCCCCC
Confidence 56677666665555431 23689999999999998654
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.7e-06 Score=74.14 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=36.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
.+|+|||+|+||++||..|+..|.+|+|+||..-+||...
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlA 41 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLA 41 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchh
Confidence 3699999999999999999999999999999888887653
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.7e-05 Score=84.91 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=72.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc----CCeeEEEcccCccC--C-CCC--------HHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL----GSEVTVVEFAADIV--P-SMD--------GEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~~--~-~~d--------~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
++++|||+|+.|+.+|..|.+. +.+||++++.+++. + .+. .++.....+.+++.||+++.++.++
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999765 46899998877641 1 111 1222223456778899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.+..+.. .|.+. +++++.+|.+|+|||.+|....
T Consensus 84 ~Id~~~~--~V~~~-----~G~~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 84 TINRQEK--VIHSS-----AGRTVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEeCCCc--EEEEC-----CCcEEECCEEEECCCCCcCCCC
Confidence 9865433 33332 4568999999999999987654
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.5e-05 Score=76.63 Aligned_cols=100 Identities=24% Similarity=0.363 Sum_probs=76.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccC-C-C---------CCHHHHHHHHHHHHhcC-cEEEcCceEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV-P-S---------MDGEIRKQFQRSLEKQK-MKFMLKTKVV 279 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~-~-~---------~d~~~~~~~~~~l~~~G-v~i~~~~~v~ 279 (507)
.+++||+|||+-|+.++..|.+.- .+||++++++..+ . . -+.++...+.+.+++.+ ++++ ..+|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~-~~~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFV-QGEVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEE-EEEEE
Confidence 578999999999999999999874 8899999987652 1 1 12345556778888565 8887 46788
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL 321 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l 321 (507)
+|+.++..+.+. ++..+++|.+|+++|.++++...
T Consensus 82 ~ID~~~k~V~~~-------~~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDAKKVTLA-------DLGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EEcccCCEEEeC-------CCccccccEEEEecCCcCCcCCC
Confidence 897666555443 45689999999999999988653
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4e-05 Score=77.61 Aligned_cols=97 Identities=33% Similarity=0.438 Sum_probs=70.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..|++.|++|+++|+.+++++....
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-------------------------------------- 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-------------------------------------- 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------------------------------
Confidence 368999999999999999999999999999998877663110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCE--EE---EEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSE--VS---VDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~--~~---v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. ...++... .. +...++ ..+.+|.+++++|.+|+
T Consensus 178 ----------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 ----------PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG--EEIKADLVIIGPGERPN 238 (415)
T ss_pred ----------HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC--cEEEeeEEEEeeccccc
Confidence 1122234566777888887774 34444332 11 344455 78999999999999995
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.01 E-value=7e-05 Score=76.55 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=67.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..+++.|.+|+++++.+.+.. . ++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~---------~----------------------------~d-- 206 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR---------G----------------------------FD-- 206 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc---------c----------------------------cC--
Confidence 35799999999999999999999999999998543210 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+++++.+. +..++ .+.+.+.+.++ .++.+|.+|+|+|..|.
T Consensus 207 ----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 207 ----------DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHG--EEIVADVVLFATGRSPN 264 (446)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCC--cEeecCEEEEeeCCCcC
Confidence 0011122345667899998773 44443 34455666566 67999999999999885
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.8e-05 Score=74.67 Aligned_cols=100 Identities=24% Similarity=0.357 Sum_probs=74.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC---CC--C-------------HHH-------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---SM--D-------------GEI------------------- 257 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~--d-------------~~~------------------- 257 (507)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .. . +++
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999998765421 00 0 000
Q ss_pred ----------------------HHHHHHHHH---hcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 010573 258 ----------------------RKQFQRSLE---KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (507)
Q Consensus 258 ----------------------~~~~~~~l~---~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~ 312 (507)
...+.+.|. ..|++++++++++.++.+++++.++++ +++++.+|+||-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~-----dg~~~~adlvIgAD 156 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFE-----RAAAREFDLVIGAD 156 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEEC-----CCCeEEeCEEEECC
Confidence 112223322 358999999999999877788888876 45679999999999
Q ss_pred cCCCCCC
Q 010573 313 GRTPFTA 319 (507)
Q Consensus 313 G~~p~~~ 319 (507)
|.+...-
T Consensus 157 G~~S~vR 163 (372)
T PRK05868 157 GLHSNVR 163 (372)
T ss_pred CCCchHH
Confidence 9877553
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.3e-05 Score=76.87 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=67.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..|++.|.+|+|+++.+.+... ..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-------------~~-------------------------- 211 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-------------ED-------------------------- 211 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-------------cC--------------------------
Confidence 368999999999999999999999999999986543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC--CEEEEEcc-CCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SEVSVDTI-EGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~--~~~~v~~~-~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+++++.+ .+..++. ....+... +++...+.+|.||+|+|.+|..
T Consensus 212 ----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 212 ----------EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 001112234566789999877 4544432 23333332 1223679999999999999863
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.6e-05 Score=77.24 Aligned_cols=99 Identities=22% Similarity=0.329 Sum_probs=67.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..|++.|.+|+|+++.+.+... .+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------------~d-- 206 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-------------------------------------EE-- 206 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-------------------------------------cC--
Confidence 368999999999999999999999999999985433110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEcc-CCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTI-EGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~-~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+|+++.+. +..+. .+...+.+. +++..++.+|.+|+|+|.+|..
T Consensus 207 ----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 207 ----------PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 0011123445667789988874 44443 233444432 2224689999999999999853
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.7e-05 Score=75.56 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=74.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCC-C---------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPS-M--------------------------------------- 253 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~-~--------------------------------------- 253 (507)
-.|+|||+|+.|+-+|..+++.|.+|.++++.+.. .+. .
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 36999999999999999999999999999876532 110 0
Q ss_pred ---C-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 254 ---D-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 254 ---d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+ .++.+.+.+.+.+.|++++ ...|++++.+++++.|++. ++.++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~-----dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCD-----DGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEEC-----CCCEEEcCEEEECcCCCcC
Confidence 0 1233445555667799987 5789999887777777765 4568999999999998764
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.7e-05 Score=76.23 Aligned_cols=96 Identities=23% Similarity=0.354 Sum_probs=68.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.+++|||+|+.|+..|..|++.|.+|++|++.+.+.... .
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~-------------d--------------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE-------------D--------------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC-------------C---------------------------
Confidence 579999999999999999999999999999854431100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+...+++.+|+++.+. +..+ +.+.+.+.+.+| .++.+|.+++|+|.+|..
T Consensus 218 ---------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g--~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 218 ---------ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDG--RTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ---------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCC--cEEEecEEEEeecCCcCC
Confidence 0011223456677899988773 4444 344566666666 679999999999999863
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.6e-06 Score=85.59 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+.+.+.+.+++.|+++++++.|++|..+++++ .|++. +++++.+|.||++.+...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~-----~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLA-----DGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEEC-----CCCEEECCEEEECCcHHH
Confidence 4677888888999999999999999998766653 45543 456799999999988643
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.8e-05 Score=72.22 Aligned_cols=93 Identities=23% Similarity=0.424 Sum_probs=66.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEE-cccCccC--CC----------------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVV-EFAADIV--PS---------------------------------------- 252 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv-~~~~~~~--~~---------------------------------------- 252 (507)
.|+|||||..|+|.|..+++.|.+|.++ +..+.+. +.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999999 4444442 11
Q ss_pred -----------CC-HHHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 253 -----------MD-GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 253 -----------~d-~~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.| ....+.+++.+++ .+++++ ...|+++..+++.+. |.+. ++..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~-----~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTK-----DGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEET-----TSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeC-----CCCEEecCEEEEeccc
Confidence 01 2344556666666 688886 678999987777766 5543 6789999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.3e-05 Score=83.34 Aligned_cols=91 Identities=29% Similarity=0.318 Sum_probs=68.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.+....-.+.+++.||++++++.+ .+
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di-- 614 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL-- 614 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE--
Confidence 46899999999999999999999999999999876542 2 234455555567778889999998876 22
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.++ +.....+|.||+|||.++..
T Consensus 615 -------~le-----~L~~~gYDaVILATGA~~~~ 637 (1019)
T PRK09853 615 -------TVE-----QLKNEGYDYVVVAIGADKNG 637 (1019)
T ss_pred -------Ehh-----hheeccCCEEEECcCCCCCC
Confidence 111 12345689999999998643
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.3e-05 Score=76.59 Aligned_cols=96 Identities=17% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..|++.|.+|+++++.+.+... .+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~-- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-------------------------------------FD-- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-------------------------------------cC--
Confidence 368999999999999999999999999999985432100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC--C-EEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--S-EVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~--~-~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+ .+..++. + .+.+.+.+| .++.+|.+|+|+|.+|.
T Consensus 208 ----------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g--~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 208 ----------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDG--ETLTVDCLIWAIGREPN 266 (450)
T ss_pred ----------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCC--cEEEeCEEEEeeCCCcC
Confidence 001122344566788998877 3444432 2 256666666 67999999999999885
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.96 E-value=1e-05 Score=83.88 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=39.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-----CcEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLG-----LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g-----~~V~lie~~~~~GG~~~~ 84 (507)
..+||+|||||++|++||..|++.| ++|+|+|+++.+||.+..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t 51 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINT 51 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEE
Confidence 3479999999999999999999887 899999999999998754
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=77.36 Aligned_cols=99 Identities=23% Similarity=0.372 Sum_probs=74.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-----------CCC----CCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-----------VPS----MDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-----------~~~----~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
..|+|||||+.|+.+|..+++.|.+|+++++.+.- .+. ..+++.+.+.+.+++.|++++ ++.++
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 46999999999999999999999999999975421 011 124566777778888899986 67888
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.+..+++...+... + ..+.+|.+|+|+|.+|....
T Consensus 84 ~i~~~~~~~~V~~~-----~-g~~~a~~lVlATGa~p~~~~ 118 (555)
T TIGR03143 84 DVDFDGDIKTIKTA-----R-GDYKTLAVLIATGASPRKLG 118 (555)
T ss_pred EEEecCCEEEEEec-----C-CEEEEeEEEECCCCccCCCC
Confidence 88765554455542 2 25889999999999987643
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.2e-05 Score=80.11 Aligned_cols=92 Identities=34% Similarity=0.373 Sum_probs=69.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .+++++.....+.+++.||++++++.+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 207 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG---- 207 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC----
Confidence 46899999999999999999999999999999876541 2 2566777777778889999999887541
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFT 318 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~ 318 (507)
..+++. + ....+|.||+|+|. .|..
T Consensus 208 ----~~v~~~-----~-~~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 208 ----KTATLE-----E-LFSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred ----CcCCHH-----H-HHhhCCEEEEeCCCCCCCc
Confidence 112221 1 13468999999997 5654
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.7e-05 Score=71.43 Aligned_cols=98 Identities=23% Similarity=0.318 Sum_probs=76.0
Q ss_pred CcEEEECCChHHHHHHHHHHHC--------------CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--------------GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS 109 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--------------g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 109 (507)
-++|||||||.|+..|.+|+.. ..+|+|+|..+.+ .
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i-------------------------L----- 268 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI-------------------------L----- 268 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH-------------------------H-----
Confidence 5799999999999999999763 3568888873211 0
Q ss_pred CCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCCCC
Q 010573 110 HGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 110 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
..+-.++..+.++.+.+.+|++..++ +..+..+...++..+|+...++|--||=|||..|
T Consensus 269 -------------------~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 269 -------------------NMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred -------------------HHHHHHHHHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCC
Confidence 01123344555778889999999995 6778999999998899889999999999999887
Q ss_pred CC
Q 010573 189 KS 190 (507)
Q Consensus 189 ~~ 190 (507)
++
T Consensus 330 rp 331 (491)
T KOG2495|consen 330 RP 331 (491)
T ss_pred ch
Confidence 53
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.94 E-value=4e-05 Score=77.99 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCcEEEEeEEEEe--cCCE--EEEEccCCceEEEEeCeEEEccCCCCCCC
Q 010573 135 LTRGIEGLFKKNKVTYVKGYGKFI--SPSE--VSVDTIEGGNTVVKGKNIIIATGSDVKSL 191 (507)
Q Consensus 135 ~~~~~~~~~~~~~v~~~~~~~~~~--d~~~--~~v~~~~g~~~~~~~d~lvlAtG~~p~~~ 191 (507)
+...+.+...+.|++++.+++..+ +.+. ..|.+.+| +++++|.+|=|||.+....
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g--~~i~ad~~IDASG~~s~L~ 214 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDG--RTIEADFFIDASGRRSLLA 214 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTS--EEEEESEEEE-SGGG-CCC
T ss_pred HHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCC--CEEEEeEEEECCCccchhh
Confidence 334455666778999999976443 3332 35677777 8899999999999765433
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=1e-05 Score=83.31 Aligned_cols=41 Identities=37% Similarity=0.520 Sum_probs=37.1
Q ss_pred CcEEEECCChHHHHHHHHHHHC------CCcEEEEecCCCCCceecc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~------g~~V~lie~~~~~GG~~~~ 84 (507)
.+|+|||||++||+||+.|++. |++|+|+|+++++||.+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEE
Confidence 4799999999999999999986 3799999999999998754
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=75.32 Aligned_cols=98 Identities=21% Similarity=0.345 Sum_probs=75.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC---C---------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---S--------------------------------------- 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~--------------------------------------- 252 (507)
-.|+|||+|++|+-+|..|++.|.+|.++++.+.... .
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4699999999999999999999999999987654210 0
Q ss_pred ---------CC------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 010573 253 ---------MD------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311 (507)
Q Consensus 253 ---------~d------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a 311 (507)
++ ..+...+.+.+++.|++++.+++++.++.+++++.+++. +++++.++.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~-----~g~~v~a~~vVgA 160 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLS-----NGERIQSRYVIGA 160 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEEC-----CCcEEEeCEEEEC
Confidence 00 012233445666789999999999999888888777664 3458999999999
Q ss_pred ecCCCC
Q 010573 312 AGRTPF 317 (507)
Q Consensus 312 ~G~~p~ 317 (507)
.|.+..
T Consensus 161 DG~~S~ 166 (487)
T PRK07190 161 DGSRSF 166 (487)
T ss_pred CCCCHH
Confidence 998653
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=73.46 Aligned_cols=97 Identities=16% Similarity=0.386 Sum_probs=73.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCccCC---------CCC-------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVP---------SMD------------------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~---------~~d------------------------------- 254 (507)
.|+|||+|+.|+-+|..|++.| .+|+++++.+..-+ .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3899999999999999999999 99999998653210 000
Q ss_pred ------------------------HHHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEE
Q 010573 255 ------------------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309 (507)
Q Consensus 255 ------------------------~~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi 309 (507)
.++.+.+.+.+.+ .|++++.++++++++.+++++.+++. ++.++.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vV 155 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLD-----NGQQLRAKLLI 155 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEEC-----CCCEEEeeEEE
Confidence 1123334455555 49999999999999887788877764 34579999999
Q ss_pred EeecCCCC
Q 010573 310 VSAGRTPF 317 (507)
Q Consensus 310 ~a~G~~p~ 317 (507)
.|.|....
T Consensus 156 ~AdG~~S~ 163 (382)
T TIGR01984 156 AADGANSK 163 (382)
T ss_pred EecCCChH
Confidence 99997753
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.8e-05 Score=83.65 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=71.8
Q ss_pred EEEEcCcHHHHHHHHHHHhcC---CeeEEEcccCccC--C-CCCH---------HHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 217 LVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADIV--P-SMDG---------EIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 217 vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~~~--~-~~d~---------~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
++|||+|+.|+.+|..+.+.+ .+||++++.+.+. + .+.. ++.....+.+++.||+++++++|+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988764 5899999887641 1 1111 12222356678899999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.+... +.+. +++++.+|.+|+|||..|....
T Consensus 81 d~~~k~--V~~~-----~g~~~~yD~LVlATGs~p~~p~ 112 (785)
T TIGR02374 81 DTDQKQ--VITD-----AGRTLSYDKLILATGSYPFILP 112 (785)
T ss_pred ECCCCE--EEEC-----CCcEeeCCEEEECCCCCcCCCC
Confidence 765433 3333 4568999999999999987654
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=75.71 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=68.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..+++.|.+|+|+++.+.+-.. ++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-------------------------------------~d-- 243 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-------------------------------------FD-- 243 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-------------------------------------cC--
Confidence 358999999999999999999999999999985432100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+. .+.+.+.+.+| .++.+|.+++|+|.+|.
T Consensus 244 ----------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 ----------DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHG--EEFVADVVLFATGRAPN 301 (499)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCC--cEEEcCEEEEeecCCCC
Confidence 0111223455677899998873 44443 34555666566 67999999999999985
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.7e-05 Score=79.88 Aligned_cols=90 Identities=30% Similarity=0.357 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+. + ..+.++.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 457899999999999999999999999999999887652 2 24567777778888899999998887521
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.+++. + ..+.+|.||+|+|..
T Consensus 216 ------~v~~~-----~-~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 ------DITLD-----E-LRAGYDAVFIGTGAG 236 (457)
T ss_pred ------ccCHH-----H-HHhhCCEEEEccCCC
Confidence 12221 1 137799999999986
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0001 Score=76.30 Aligned_cols=138 Identities=26% Similarity=0.294 Sum_probs=85.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-------------------------------C---------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------------------------------M--------- 253 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------~--------- 253 (507)
.|+|+|||+|.+|+-.+..+.+.|.+++++++.+.+... +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 379999999999999999999999999999988765210 0
Q ss_pred --CHHHHHHHHHHHHhcCc--EEEcCceEEEEEEcC-----CeEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCCCC
Q 010573 254 --DGEIRKQFQRSLEKQKM--KFMLKTKVVGVDLSG-----DGVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAGLG 322 (507)
Q Consensus 254 --d~~~~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~-----~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~--p~~~~l~ 322 (507)
..++.+.++...+.-++ .+.++++|++++..+ +...|+.. .++..++..+|.|++|+|.. |+.+..
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~~P~~P~~- 157 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFDAVVVATGHFSKPNIPEP- 157 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcCCCCCChh-
Confidence 04677777777776665 588999999998754 24556543 34444567799999999964 443310
Q ss_pred CcccCceecCCCCeecCCCCCC----CCCCeEEecCCC
Q 010573 323 LDKIGVETDKMGRIPVNERFAT----NIPGVYAIGDVI 356 (507)
Q Consensus 323 ~~~~gl~~~~~G~i~Vd~~~~t----~~~~IyA~GD~a 356 (507)
.-.|++.- .|.+.-...++. ..+.|-++|-..
T Consensus 158 -~~~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 158 -SFPGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp ---CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred -hhhhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 01133321 244443333331 246788888544
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=74.85 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=66.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..+++.|.+|+|||+.+.+.. . .+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~---------~----------------------------~d-- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP---------G----------------------------TD-- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC---------C----------------------------CC--
Confidence 46899999999999999999999999999998543311 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEcc---CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTI---EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~---~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+. .+.+.+... +|+...+.+|.|++|+|.+|.
T Consensus 215 ----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 215 ----------TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred ----------HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 0011122345667789998773 44443 234444322 343467999999999999985
|
|
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.1e-05 Score=78.17 Aligned_cols=46 Identities=26% Similarity=0.249 Sum_probs=34.1
Q ss_pred CCCeecCCCCCC----------CCCCeEEecCCCC-CCC--------cHhHHHHHHHHHHHHHcC
Q 010573 333 MGRIPVNERFAT----------NIPGVYAIGDVIP-GPM--------LAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 333 ~G~i~Vd~~~~t----------~~~~IyA~GD~a~-~~~--------~~~~A~~~g~~aa~~i~~ 378 (507)
.|+|.+|...+| ++||+||+|+|++ +.. ....|.-.|++|++++..
T Consensus 339 ~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 403 (570)
T PRK05675 339 MGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEK 403 (570)
T ss_pred CCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHH
Confidence 377888777664 7999999999974 221 235678889999988863
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.2e-05 Score=82.46 Aligned_cols=39 Identities=31% Similarity=0.462 Sum_probs=36.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
+|+|||||++|++||+.|++.|++|+|+|+.+.+||.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Confidence 589999999999999999999999999999999999764
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00019 Score=72.77 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=71.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC------------------CCC------C----------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV------------------PSM------D---------------- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~------------------~~~------d---------------- 254 (507)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +.+ .
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 369999999999999999999999999999764321 000 0
Q ss_pred ----------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 010573 255 ----------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (507)
Q Consensus 255 ----------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~ 312 (507)
.++.+.+.+..++.|++++.+++|++++.+++.+..... ++.++.+|.||.|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~-----~g~~i~A~~VI~A~ 160 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA-----DGDVIEAKTVILAD 160 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc-----CCcEEECCEEEEEe
Confidence 011234555666789999999999998766666543322 34579999999999
Q ss_pred cCCC
Q 010573 313 GRTP 316 (507)
Q Consensus 313 G~~p 316 (507)
|...
T Consensus 161 G~~s 164 (428)
T PRK10157 161 GVNS 164 (428)
T ss_pred CCCH
Confidence 9854
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=74.57 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=67.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..|++.|.+|+|+++.+.+... . .
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------~-------d-------------------------- 206 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------F-------D-------------------------- 206 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------c-------C--------------------------
Confidence 368999999999999999999999999999985433110 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecC---CEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~---~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+|+++.+. +..+.. ....+.+.++ ...+.+|.+++|+|.+|..
T Consensus 207 ----------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 207 ----------SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDG-KSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred ----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCC-cEEEEcCEEEEeeCCCcCc
Confidence 0011223455667789988873 444432 2245555554 2569999999999999863
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.8e-05 Score=84.54 Aligned_cols=44 Identities=34% Similarity=0.558 Sum_probs=39.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
.....+|+|||||++|++||..|++.|++|+|+|+++.+||...
T Consensus 235 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 235 GVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccc
Confidence 34567999999999999999999999999999999999987753
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.88 E-value=4e-05 Score=78.57 Aligned_cols=92 Identities=25% Similarity=0.394 Sum_probs=71.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+.+|..+++.|.+|+++++.+.+. + .+++++.....+.+++.|++++.++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46899999999999999999999999999999887542 2 246677777778889999999999876321
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+.+. .....+|.||+|+|..+..
T Consensus 218 ------~~~~------~~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 ------ISLD------DLLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred ------cCHH------HHHhcCCEEEEEeCCCCCC
Confidence 1111 1124699999999998753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=69.96 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=32.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
+.+|+|||||.+|+++|..|.++|.+|.|+|+.+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 358999999999999999999999999999996644
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00084 Score=64.77 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=97.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhc-CCeeEEEcccCccCC---------------------------CCCH----------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVP---------------------------SMDG---------- 255 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~---------------------------~~d~---------- 255 (507)
.-.|+|||+|..|+-+|..+++. |.+|+++++...+.. .++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35799999999999999999976 889999998654310 0111
Q ss_pred -HHHHHHH-HHHHhcCcEEEcCceEEEEEEcCCeEE-EEEe------ecCC---CceEEEEcCEEEEeecCCCCCCCCCC
Q 010573 256 -EIRKQFQ-RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLE------PAAG---GEKTILEADVVLVSAGRTPFTAGLGL 323 (507)
Q Consensus 256 -~~~~~~~-~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~------~~~~---g~~~~i~~D~vi~a~G~~p~~~~l~~ 323 (507)
+....+. +.+++.|++++.++.+.++..+++.+. +.+. +... .+...+.++.||+|||..+.......
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~ 251 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 251 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhh
Confidence 1112233 344457999999999999877666543 3321 1111 12347899999999996653221111
Q ss_pred c---ccCcee--cCCCCeecCC-------CCCCCCCCeEEecCCC----CCCCc--HhHH-HHHHHHHHHHHcCC
Q 010573 324 D---KIGVET--DKMGRIPVNE-------RFATNIPGVYAIGDVI----PGPML--AHKA-EEDGVACVEFLAGK 379 (507)
Q Consensus 324 ~---~~gl~~--~~~G~i~Vd~-------~~~t~~~~IyA~GD~a----~~~~~--~~~A-~~~g~~aa~~i~~~ 379 (507)
. ..|+.. ......+++. +.+--+||+|++|=.+ +.|.. ...+ ...|+.||+.++.+
T Consensus 252 ~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 252 KRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHH
Confidence 1 111110 0011222221 1222479999999666 33321 1223 35788888888754
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=72.98 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=71.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----CCCHHH---------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----SMDGEI--------------------------------- 257 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----~~d~~~--------------------------------- 257 (507)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.. .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 699999999999999999999999999998865311 000000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 258 ---------------RKQFQRSLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 258 ---------------~~~~~~~l~~--~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
...+.+.|.+ .+.++++++++++++.+++++.+++. +++++.+|+||.|.|.+..+
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFA-----DGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEEC-----CCCEEecCEEEECCCcchHH
Confidence 0112222322 24578889999999887888888765 45688999999999977654
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=73.96 Aligned_cols=95 Identities=22% Similarity=0.302 Sum_probs=64.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... .+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-------------------------------------~d-- 206 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-------------------------------------LD-- 206 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-------------------------------------cC--
Confidence 468999999999999999999999999999985433110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+ +.+++++.+ .+..++ ...+.+.+.+| ..+.+|.|++|+|.+|.
T Consensus 207 ----------~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g--~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 207 ----------DDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDG--STVEADVLLVATGRVPN 263 (451)
T ss_pred ----------HHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCC--cEeecCEEEEEECCccC
Confidence 00001112222 346887766 344443 23455666666 67999999999999985
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00058 Score=65.27 Aligned_cols=99 Identities=26% Similarity=0.405 Sum_probs=72.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCe-eEEEcccCc---c--------CCC-----CCHHHHHHHHHHHHhcCcEEEcCce
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAAD---I--------VPS-----MDGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~---~--------~~~-----~d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
-.|+|||+|+.|+-.|-.+.+.+.+ +.+++.... + .|. ..+++.+...++.+.-|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 3689999999999999999999988 555554311 1 121 2356777777777788999887 77
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 278 v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.+++..++...+... +++ +.++.||+|+|..+....
T Consensus 83 v~~v~~~~~~F~v~t~-----~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 83 VEKVELEGGPFKVKTD-----KGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEeecCceEEEEEC-----CCe-EEEeEEEECcCCcccCCC
Confidence 7777765545566653 444 999999999999887654
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.4e-05 Score=74.17 Aligned_cols=36 Identities=44% Similarity=0.641 Sum_probs=32.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
....|||||||||.||..||..++|.|.+.+|+..+
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 456799999999999999999999999999999874
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.9e-05 Score=81.17 Aligned_cols=43 Identities=23% Similarity=0.445 Sum_probs=39.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~ 84 (507)
..+||+|||||++|++||.+|++.|. +|+|+|+++.+||.+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCccee
Confidence 45799999999999999999999998 69999999999997653
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00019 Score=73.78 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..|++.|.+|+++++.+.+... .
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------~---------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------E---------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------h----------------------
Confidence 368999999999999999999999999999986543210 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC--C-EEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--S-EVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~--~-~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
...+...+.+.+++. |+++.+ .+..++. . .+.+...+++..++.+|.+++|+|.+|..
T Consensus 209 ---------d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 209 ---------DPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred ---------hHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 001112233455666 888766 3444432 1 34443344545789999999999999853
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00035 Score=61.40 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=99.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-------CCC-------------------------------H
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMD-------------------------------G 255 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~~d-------------------------------~ 255 (507)
-..|+|||+|++|+-+|..|++.|.+|.+++++-.+.. .|+ .
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 46799999999999999999999999999998765521 111 1
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCC-eEE-EEEe--e----cCCCceEEEEcCEEEEeecCCCCCCCCCCcc--
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLE--P----AAGGEKTILEADVVLVSAGRTPFTAGLGLDK-- 325 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~-v~~~--~----~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~-- 325 (507)
+....+....-+.|.+++..+.+..+--.++ ++. +.+. . .---|.-.++++.|+-+||.....-.+..++
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 2333333444456899999999988765555 443 2221 0 0001445789999999999776442211111
Q ss_pred -cCceecCCCCeecC-------CCCCCCCCCeEEecCCC----CCCCc--Hh-HHHHHHHHHHHHHcC
Q 010573 326 -IGVETDKMGRIPVN-------ERFATNIPGVYAIGDVI----PGPML--AH-KAEEDGVACVEFLAG 378 (507)
Q Consensus 326 -~gl~~~~~G~i~Vd-------~~~~t~~~~IyA~GD~a----~~~~~--~~-~A~~~g~~aa~~i~~ 378 (507)
.++++...+..+.+ ++.+--.||+|++|=.+ +.|.. .. .=..+|+.||+.++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 12332222223322 12233579999999666 22221 11 223467888877654
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00014 Score=74.81 Aligned_cols=94 Identities=20% Similarity=0.346 Sum_probs=65.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..|+++|.+|+++++...+.. ..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~--------------~~-------------------------- 217 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQ--------------ED-------------------------- 217 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCC--------------CC--------------------------
Confidence 35899999999999999999999999999987321100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+ .+..++ ...+.+.+.++ ++.+|.||+|+|.+|.
T Consensus 218 ----------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 ----------PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG---TLRAEQLLVATGRTPN 274 (468)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC---EEEeCEEEEccCCCCC
Confidence 001122345667789999887 444443 33344544333 5999999999999985
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00023 Score=72.84 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=64.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..|++.|.+|+||++.+.+... .+ .
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-------------------------------------~d-~ 210 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-------------------------------------LD-E 210 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-------------------------------------cC-H
Confidence 368999999999999999999999999999985432110 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
.+...+.+.+ +.+++++.+ .+..++ ...+.+.+.+| .++.+|.+++|+|.+|.
T Consensus 211 -----------~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 211 -----------DISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDG--STVTADVLLVATGRVPN 266 (452)
T ss_pred -----------HHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCC--CEEEcCEEEEeeccCcC
Confidence 0001112222 346888766 344443 34456666666 57999999999999985
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.2e-05 Score=76.64 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=66.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHh--cCCeeEEEcccCccC--------CC--CCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWAR--LGSEVTVVEFAADIV--------PS--MDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~--------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
.+++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ..+.+...+.+.++..+|+++.+..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 47899999999999999999987 799999999988763 11 1123444566677778999988765521
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.++++ + -...+|.||+|+|..+.
T Consensus 105 --------dvtl~-----~-L~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 --------DVSLS-----E-LRDLYHVVVLAYGAESD 127 (491)
T ss_pred --------cccHH-----H-HhhhCCEEEEecCCCCC
Confidence 12222 1 12468999999999863
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00027 Score=65.28 Aligned_cols=40 Identities=33% Similarity=0.509 Sum_probs=35.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG 79 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~G 79 (507)
+...||+||||||..|++.|.+|.-+ +.+|.|+|++..++
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 34579999999999999999998765 89999999987765
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00027 Score=65.51 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=52.0
Q ss_pred CCeeEEEcccCccCCCCCHHHHHHHHHHHHh------cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEE
Q 010573 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEK------QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVL 309 (507)
Q Consensus 237 g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~------~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi 309 (507)
|..|--.+|....+|.. .++...+...+++ .-+++.++++|+.|...++.+. |++.+ .+|+...+..|.||
T Consensus 122 GHSvpRTHr~s~plppg-fei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd-~sgek~~~~~~~VV 199 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPPG-FEIVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMD-ASGEKSKIIGDAVV 199 (477)
T ss_pred CCCCCcccccCCCCCCc-hHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEc-CCCCccceecCceE
Confidence 44554445666555432 2455555555543 2578899999999997777765 66653 44566678999999
Q ss_pred EeecCCCC
Q 010573 310 VSAGRTPF 317 (507)
Q Consensus 310 ~a~G~~p~ 317 (507)
+|+|--..
T Consensus 200 latGGf~y 207 (477)
T KOG2404|consen 200 LATGGFGY 207 (477)
T ss_pred EecCCcCc
Confidence 99985443
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.2e-05 Score=80.94 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=31.5
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGA 77 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~ 77 (507)
++|+||||||||+++|+.|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3799999999999999999998 899999999765
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00023 Score=73.18 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=63.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.+++|||||+.|+.+|..+++.|.+|+||++.+.+... .+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-------------------------------------~d--- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-------------------------------------AD--- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-------------------------------------CC---
Confidence 58999999999999999999999999999986543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccC--CceEEEEeCeEEEccCCCCC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIE--GGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~--g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++. ++++.+. +..+ +.+.+.+.+.+ ++..++.+|.+|+|+|.+|.
T Consensus 215 ---------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 215 ---------KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred ---------HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 00111122334444 7777663 3333 23445554433 22357999999999999985
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00034 Score=70.35 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=75.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc--CC-----------------------------C-----------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--VP-----------------------------S----------- 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~--~~-----------------------------~----------- 252 (507)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.. .. .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 57999999999999999999999999999987641 00 0
Q ss_pred -----C-------------CHHHHHHHHHHHHhcCcEEEcCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 253 -----M-------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 253 -----~-------------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
+ ..++.+.+.+...+.|+++++++++++++. +++.+.+++. .+|+..++.+|+||-|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~--~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYE--KDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEE--cCCeEEEEEeCEEEECCC
Confidence 0 012223344444567999999999999876 5566677763 233445799999999999
Q ss_pred CCCCCC
Q 010573 314 RTPFTA 319 (507)
Q Consensus 314 ~~p~~~ 319 (507)
.....-
T Consensus 161 ~~S~vR 166 (392)
T PRK08243 161 FHGVSR 166 (392)
T ss_pred CCCchh
Confidence 887653
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00052 Score=68.91 Aligned_cols=142 Identities=25% Similarity=0.259 Sum_probs=93.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC---CC------------------------------------
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---SM------------------------------------ 253 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~------------------------------------ 253 (507)
..++++|||+|++|+-.|..|.+.|.++++++|.+.+.. ..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 368999999999999999999999999999999877631 00
Q ss_pred ---C-HHHHHHHHHHHHhcCc--EEEcCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCCCCCc
Q 010573 254 ---D-GEIRKQFQRSLEKQKM--KFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAGLGLD 324 (507)
Q Consensus 254 ---d-~~~~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~--p~~~~l~~~ 324 (507)
+ .++.+.++...+.-++ .+.+++.+..++... +...|...+..+. ..+..+|.|++|+|.. |+.+.. +
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~~--~ 161 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQI--P 161 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCcC--C
Confidence 0 1455555555555554 577788888888777 6778887643221 3678899999999977 555432 2
Q ss_pred ccCceecCCCCee-cCCCCCC---CCCCeEEecCCCCC
Q 010573 325 KIGVETDKMGRIP-VNERFAT---NIPGVYAIGDVIPG 358 (507)
Q Consensus 325 ~~gl~~~~~G~i~-Vd~~~~t---~~~~IyA~GD~a~~ 358 (507)
..+++.-. |.+. .-++... ..+.|.++|--.++
T Consensus 162 g~~~~~f~-G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG 198 (448)
T KOG1399|consen 162 GPGIESFK-GKIIHSHDYKSPEKFRDKVVLVVGCGNSG 198 (448)
T ss_pred CCchhhcC-CcceehhhccCcccccCceEEEECCCccH
Confidence 21122222 3332 2222211 24678899855443
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00024 Score=73.20 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=65.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.+++|||||+.|+.+|..|++.|.+|+|+++. .+- |. ++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l---------~~----------------------------~d--- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL---------RG----------------------------FD--- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc---------cc----------------------------cC---
Confidence 47999999999999999999999999999872 210 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCc-eEEEEeCeEEEccCCCCC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGG-NTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~-~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. ...+. ...+.+.+.+++ ..++.+|.+++|+|.+|.
T Consensus 220 ---------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 220 ---------QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred ---------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 0111223455677799988874 33332 334455544442 247999999999999885
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=73.43 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
..+++|||||+.|+..|..+.+. |.+|+|+++.+.+... +
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-------------------------------------~ 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-------------------------------------F 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-------------------------------------c
Confidence 35799999999999999776654 8999999985543110 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec---CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d---~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
+ ..+...+.+.+++.+|+++.+. +..+. .....+.+.++ ..+.+|.+++|+|.+|.
T Consensus 230 d------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 230 D------------STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESG--KTLDVDVVMMAIGRVPR 289 (486)
T ss_pred C------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCC--CEEEcCEEEEeeCCCcC
Confidence 0 0112223455677889988874 44443 22245555566 57999999999999985
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=7e-05 Score=76.64 Aligned_cols=95 Identities=24% Similarity=0.296 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------CC--CCH-HHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------PS--MDG-EIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~~--~d~-~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ++. ++.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~- 216 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK- 216 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC-
Confidence 347899999999999999999999999999999766431 21 222 3566666778889999999886521
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFT 318 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~ 318 (507)
.+++.+ ....+.+|.||+|+|. .|..
T Consensus 217 -------~v~~~~----~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 -------TVTIDE----LLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred -------cCCHHH----HHhccCCCEEEEeCCCCCCCC
Confidence 122210 1124569999999998 5654
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=70.00 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=75.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
...|+++|+|..|+.+|..|....++|++|++++.+ +|. .
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~---------~~~--------l----------------------- 252 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWL---------LPR--------L----------------------- 252 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccc---------hhh--------h-----------------------
Confidence 457999999999999999999999999999985421 111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEE-Ee----cCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK-FI----SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~----d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
+...+.+.++..+++++|+++.+++. .+ +.+...|.+.+| .++.+|-||+.+|++|.
T Consensus 253 --------f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 253 --------FGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPN 314 (478)
T ss_pred --------hhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC--CEeccCeEEEeeccccc
Confidence 01234455678899999999998753 22 345677888888 89999999999999995
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=73.70 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=65.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.+++|||||+.|+..|..|++.|.+|+|+++. .+... ++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-------------------------------------~d--- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-------------------------------------FD--- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-------------------------------------CC---
Confidence 48999999999999999999999999999873 11000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+. .....+.+.+| .++.+|.|++|+|.+|.
T Consensus 222 ---------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g--~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 222 ---------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDG--TTELFDTVLYATGRKPD 279 (499)
T ss_pred ---------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCC--CEEEcCEEEEeeCCCCC
Confidence 0011223455677789988774 33332 23455666666 56899999999999985
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.6e-05 Score=76.83 Aligned_cols=91 Identities=26% Similarity=0.355 Sum_probs=69.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+++. + .+++++.....+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 35799999999999999999999999999999887642 2 245667666677888899999998877410
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCC-CC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PF 317 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~-p~ 317 (507)
+.. +.....+|.|++|+|.. |.
T Consensus 220 ------~~~------~~~~~~~d~VilAtGa~~~~ 242 (485)
T TIGR01317 220 ------ISA------DELKEQFDAVVLAGGATKPR 242 (485)
T ss_pred ------cCH------HHHHhhCCEEEEccCCCCCC
Confidence 111 11235689999999998 44
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00035 Score=71.39 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=66.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..|++.|.+|+|+++.+.+. |.. +
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l---------~~~----------------------------~-- 198 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL---------PRE----------------------------D-- 198 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC---------CCc----------------------------C--
Confidence 3589999999999999999999999999999854321 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..++ ...+.+...++ ++.+|.+++|+|.+|.
T Consensus 199 ----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g---~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 ----------RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA---QLAVDALLIASGRQPA 255 (441)
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC---eEEeCEEEEeecCCcC
Confidence 0011223455677899998773 44443 33455554443 4889999999999985
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=73.26 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHH-hcCCeeEEEcccCccCC-------CCC---HHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWA-RLGSEVTVVEFAADIVP-------SMD---GEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~-~~g~~Vtlv~~~~~~~~-------~~d---~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
..+++|+|||+|+.|+.+|..+. +.|.+|+++++.+.+.. ... +.+...+.+.+...+++++.+..+-.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 35789999999999999999764 67999999999987631 111 24445555556667888875443321
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.++++ .-.-.+|.||+|+|..+.
T Consensus 117 --------Dvt~e------eL~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 --------DLKME------ELRNHYNCVIFCCGASEV 139 (506)
T ss_pred --------ccCHH------HHHhcCCEEEEEcCCCCC
Confidence 11111 112368999999998864
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00034 Score=72.93 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=66.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..+++.|.+|+|+++.+.+... ++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-------------------------------------~d-- 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-------------------------------------FD-- 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-------------------------------------CC--
Confidence 468999999999999999999999999999985432100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCC---EEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPS---EVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~---~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..++.. .+.+...++ ..++.+|.|++|+|.+|.
T Consensus 278 ----------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~-~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 278 ----------ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDG-RKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCC-CEEEECCEEEECcCCCCC
Confidence 0011222345667789988774 4444322 234433333 257999999999999885
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00036 Score=72.02 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=64.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.+++|||+|+.|+..|..|++.|.+|+|+++...+ |. ..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l----------~~----~d--------------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL----------FR----ED--------------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC----------Cc----ch---------------------------
Confidence 58999999999999999999999999999873211 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+ +...+.+...++ ++.+|.+|+|+|..|.
T Consensus 228 ---------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g---~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 228 ---------PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG---ELRAEKLLISTGRHAN 284 (479)
T ss_pred ---------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC---eEEeCEEEEccCCCCC
Confidence 0111223455677889988763 4333 234455555444 5889999999999985
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00045 Score=71.26 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=69.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCccCCC-----CC------------------HHH------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPS-----MD------------------GEI------------ 257 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~-----~d------------------~~~------------ 257 (507)
++|+|||+|+.|+-++..|.+.+. +|++++++..+... -+ +.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 579999999999999999987654 78999876543210 00 001
Q ss_pred -------------------------H---HHHHHHHHhcC--cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 010573 258 -------------------------R---KQFQRSLEKQK--MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307 (507)
Q Consensus 258 -------------------------~---~~~~~~l~~~G--v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~ 307 (507)
. +.+.+.+.+.| +.++.+++|+.++.+++++.+++.+ ++..+.+|.
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~----gg~~i~aD~ 157 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQ----DLPSETFDL 157 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECC----CCeEEEcCE
Confidence 1 11123333455 7788889999998888887776531 346799999
Q ss_pred EEEeecCCCC
Q 010573 308 VLVSAGRTPF 317 (507)
Q Consensus 308 vi~a~G~~p~ 317 (507)
||+|+|..+.
T Consensus 158 VVLAtGh~~p 167 (534)
T PRK09897 158 AVIATGHVWP 167 (534)
T ss_pred EEECCCCCCC
Confidence 9999997654
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=69.85 Aligned_cols=99 Identities=20% Similarity=0.378 Sum_probs=72.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC--C---CC-----------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--S---MD----------------------------------- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~---~d----------------------------------- 254 (507)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . +.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999997764310 0 00
Q ss_pred --------------------HHHHHHHHHHHH-hcCcEEEcCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEe
Q 010573 255 --------------------GEIRKQFQRSLE-KQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVS 311 (507)
Q Consensus 255 --------------------~~~~~~~~~~l~-~~Gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~g~~~~i~~D~vi~a 311 (507)
.++.+.+.+.+. ..|++++++++++.++.++++. .+++. +++++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----~g~~~~~~~vIgA 160 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLS-----DGERVAPTVLVGA 160 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeC-----CCCEEECCEEEEC
Confidence 012233333443 3579999999999998766553 45543 4468999999999
Q ss_pred ecCCCCC
Q 010573 312 AGRTPFT 318 (507)
Q Consensus 312 ~G~~p~~ 318 (507)
.|.....
T Consensus 161 DG~~S~v 167 (388)
T PRK07045 161 DGARSMI 167 (388)
T ss_pred CCCChHH
Confidence 9987654
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00058 Score=68.51 Aligned_cols=102 Identities=28% Similarity=0.391 Sum_probs=72.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEccc-CccC-----------CCC------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA-ADIV-----------PSM------------------------------ 253 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~~-----------~~~------------------------------ 253 (507)
.|+|||+|+.|+-+|..|++.|.+|.++++. +... ..+
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999986 2210 000
Q ss_pred --------C-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeec---CCCceEEEEcCEEEEeecCCCCC
Q 010573 254 --------D-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPA---AGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 254 --------d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~---~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+ ..+.+.+.+...+.|++++.. .++++..+++++.+++.+. .++...++.+|.||.|.|.....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v 157 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV 157 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence 0 112234455556679999754 6888887777777776531 12234579999999999976543
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00038 Score=69.89 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=71.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC----CCC------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----SMD------------------------------------ 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----~~d------------------------------------ 254 (507)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.... .+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~ 87 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI 87 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence 4699999999999999999999999999998643210 000
Q ss_pred -----------------------HHHHHHHHHHHHhc-CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEE
Q 010573 255 -----------------------GEIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310 (507)
Q Consensus 255 -----------------------~~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~ 310 (507)
..+.+.+.+.+.+. ++. +.+++++.++.+++++.+++. +++++.+|.||.
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a~~vI~ 161 (388)
T PRK07494 88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLA-----DGTTLSARLVVG 161 (388)
T ss_pred CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEEC-----CCCEEEEeEEEE
Confidence 01223334444444 455 778999999877888877764 456899999999
Q ss_pred eecCCCCC
Q 010573 311 SAGRTPFT 318 (507)
Q Consensus 311 a~G~~p~~ 318 (507)
|.|.....
T Consensus 162 AdG~~S~v 169 (388)
T PRK07494 162 ADGRNSPV 169 (388)
T ss_pred ecCCCchh
Confidence 99987643
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.3e-05 Score=82.40 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=69.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 284 (507)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .+++++.....+.+++.||++++++.+.
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg----- 504 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG----- 504 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-----
Confidence 5799999999999999999999999999999876542 2 2356777778888999999999886541
Q ss_pred CCeEEEEEeecCCCceEEEEcCEEEEeecCC-CCC
Q 010573 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRT-PFT 318 (507)
Q Consensus 285 ~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~-p~~ 318 (507)
. .+++... .....+|.||+|+|.. |..
T Consensus 505 -~--~~~~~~l----~~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 -K--TFTVPQL----MNDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred -C--ccCHHHH----hhccCCCEEEEecCCCCCCC
Confidence 1 1222110 0124589999999984 544
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0005 Score=70.96 Aligned_cols=97 Identities=22% Similarity=0.374 Sum_probs=69.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC----------C-------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS----------M------------------------------- 253 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------~------------------------------- 253 (507)
-.|+|||+|+.|+-+|..+++.|.+|.++++...+... +
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 46999999999999999999999999999864322110 0
Q ss_pred -C-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 254 -D-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 254 -d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+ ..+.+.+.+.+.+.|+++ .++.|+++..+++++.+.... ++.++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~----dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACE----DGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEc----CCcEEECCEEEECCCcCh
Confidence 0 122244555556679998 578999987766665533221 456899999999999877
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.5e-05 Score=78.34 Aligned_cols=40 Identities=25% Similarity=0.474 Sum_probs=37.0
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
+|+|||||.+|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeee
Confidence 5899999999999999999999999999999999997643
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00012 Score=79.91 Aligned_cols=93 Identities=29% Similarity=0.334 Sum_probs=69.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .++.++.....+.+++.||+++.++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~---- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG---- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC----
Confidence 36799999999999999999999999999999865431 2 2355666666677888999999887651
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFT 318 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~ 318 (507)
. .++++ +.....+|.||+|+|. .|..
T Consensus 506 --~--~v~~~-----~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 --K--TITIE-----ELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred --C--cCCHH-----HHhhcCCCEEEEeCCCCCCCC
Confidence 1 12222 2234568999999998 4654
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00053 Score=69.05 Aligned_cols=100 Identities=18% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC----CeeEEEcccCccCCC------------------C------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG----SEVTVVEFAADIVPS------------------M------------------ 253 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g----~~Vtlv~~~~~~~~~------------------~------------------ 253 (507)
...|+|||+|+.|+-+|..|++.| .+|+++++.+..-.. +
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 357999999999999999999987 479999976421000 0
Q ss_pred ---------------C--------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEE
Q 010573 254 ---------------D--------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310 (507)
Q Consensus 254 ---------------d--------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~ 310 (507)
+ ..+.+.+.+.+++.|++++.++++++++.+++++++++.+. + .++++.+|+||.
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~-~-g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTP-Q-GARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCC-C-cceEEeeeEEEE
Confidence 0 24556667777888999999999999988888888887521 1 126899999999
Q ss_pred eecCC
Q 010573 311 SAGRT 315 (507)
Q Consensus 311 a~G~~ 315 (507)
|.|..
T Consensus 169 ADG~~ 173 (398)
T PRK06996 169 AEGGL 173 (398)
T ss_pred CCCCC
Confidence 99953
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.9e-05 Score=78.63 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=39.7
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
.....+|+|||||++|++||++|++.|++|+|+|+++.+||.+.
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcce
Confidence 33457999999999999999999999999999999999999754
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00047 Score=72.83 Aligned_cols=95 Identities=17% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..|++.|.+|+||++...+ |. ..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l----------~~----~d-------------------------- 309 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF----------FR----ED-------------------------- 309 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc----------cc----cC--------------------------
Confidence 358999999999999999999999999999873211 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+|+++.+. +..+. ...+.+.+.++ .+.+|.+++|+|.+|..
T Consensus 310 ----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~---~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 310 ----------PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG---ELRADKLLVATGRAPNT 367 (561)
T ss_pred ----------HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC---eEEeCEEEEccCCCcCC
Confidence 0011223455677889988763 44442 33444544443 58999999999999863
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=74.61 Aligned_cols=90 Identities=30% Similarity=0.406 Sum_probs=68.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.....+.+.+.|+++++++.+..-
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKD-- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCc--
Confidence 46899999999999999999999999999999877652 1 235566666667788899999988866310
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+.. +.....+|.|++|+|..+
T Consensus 220 ------~~~------~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 ------ITA------EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred ------CCH------HHHHhhCCEEEEecCCCC
Confidence 111 112357899999999973
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00058 Score=68.58 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=68.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----C----C---------------------C-----------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----S----M---------------------D----------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----~----~---------------------d----------- 254 (507)
.|+|||+|+.|+-+|..+++.|.+|+++++.+.+.. . + +
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 389999999999999999999999999997653210 0 0 0
Q ss_pred ----HHHHHHHHHHHHhcCcEEEcCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 ----GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ----~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+.+.+.+.+.+.|++++ ...++.++.+ ++.+.+++. ++.++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~-----~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCA-----GGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeC-----CCCEEEeCEEEECCCCch
Confidence 1233444555566788886 5578887665 445556653 446899999999999887
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.64 E-value=8e-05 Score=77.45 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=38.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
.+++|+|||||++|+++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCcee
Confidence 446999999999999999999999999999999999998653
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=71.20 Aligned_cols=92 Identities=24% Similarity=0.386 Sum_probs=74.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 284 (507)
+++|.|||+|+.|+-+|..|.+.|..|++.+|.++.. | .+|+.+.+.-.+.|.+.||+|++|+.|-+-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~--- 1861 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH--- 1861 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc---
Confidence 7899999999999999999999999999999999863 2 467778887788899999999999876321
Q ss_pred CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 285 ~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+.+ +.-.-+-|.||+|+|..-..+
T Consensus 1862 -----vs~------d~l~~~~daiv~a~gst~prd 1885 (2142)
T KOG0399|consen 1862 -----VSL------DELKKENDAIVLATGSTTPRD 1885 (2142)
T ss_pred -----ccH------HHHhhccCeEEEEeCCCCCcC
Confidence 222 334456799999999765443
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0008 Score=67.62 Aligned_cols=98 Identities=24% Similarity=0.330 Sum_probs=76.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-C-----------------CCC-----------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-P-----------------SMD----------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-~-----------------~~d----------------------- 254 (507)
.|+|||+|+.|.-+|..+++.|.+|.++++...+. + .+.
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~~ 84 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIEV 84 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEec
Confidence 58999999999999999999999999999876542 1 010
Q ss_pred ----------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 ----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 ----------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+-+++.+..++.|.+++.+++++.+..+++++.+.+.. ...++.++.||.|.|....
T Consensus 85 ~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~----~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 85 PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRA----GDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEc----CCEEEEcCEEEECCCcchH
Confidence 1233456667778899999999999999888777665542 2268999999999996654
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0007 Score=70.63 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..|++.|.+|+|+++.+.+... ++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-------------------------------------~d-- 292 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-------------------------------------FD-- 292 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-------------------------------------cC--
Confidence 458999999999999999999999999999985432110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec---CCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d---~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+|+++.+. +..+. ...+.+.+.++ ....+|.+++|+|.+|..
T Consensus 293 ----------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g--~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 293 ----------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG--TVEGFSHVMFATGRKPNT 352 (558)
T ss_pred ----------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe--EEEecCEEEEeeccccCC
Confidence 0111223455677899998774 33332 33344544433 445589999999999853
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00074 Score=67.98 Aligned_cols=99 Identities=19% Similarity=0.402 Sum_probs=71.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc---CCeeEEEcccC-cc--CCC-------C--------------C-------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAA-DI--VPS-------M--------------D------------- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~-~~--~~~-------~--------------d------------- 254 (507)
-+|+|||+|+.|+-+|..|++. |.+|+++++.. .. .+. + +
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 3699999999999999999998 99999999841 10 000 0 0
Q ss_pred ----------------------------HHHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEc
Q 010573 255 ----------------------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEA 305 (507)
Q Consensus 255 ----------------------------~~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~ 305 (507)
..+.+.+.+.+.+ .|++++.+++++++..+++++.+++. ++..+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~-----~g~~~~a 158 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD-----DGETLTG 158 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC-----CCCEEEe
Confidence 0111223333433 47999999999999877777777764 3457999
Q ss_pred CEEEEeecCCCCC
Q 010573 306 DVVLVSAGRTPFT 318 (507)
Q Consensus 306 D~vi~a~G~~p~~ 318 (507)
|.||.|.|.....
T Consensus 159 ~~vI~AdG~~S~v 171 (395)
T PRK05732 159 RLLVAADGSHSAL 171 (395)
T ss_pred CEEEEecCCChhh
Confidence 9999999987653
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=77.75 Aligned_cols=91 Identities=27% Similarity=0.329 Sum_probs=68.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.+...+.+++.|+++++++.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~--- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR--- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccC---
Confidence 46899999999999999999999999999999877641 2 23556666667778889999998875421
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.+++. + ....+|.|++|+|..+.
T Consensus 269 -----dv~~~-----~-~~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 -----DITLE-----E-LQKEFDAVLLAVGAQKA 291 (652)
T ss_pred -----ccCHH-----H-HHhhcCEEEEEcCCCCC
Confidence 11111 1 12348999999998764
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0019 Score=65.64 Aligned_cols=137 Identities=25% Similarity=0.335 Sum_probs=85.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCe-eEEEcccCccCC------------------------CCC--------HHHHHH
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVP------------------------SMD--------GEIRKQ 260 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~------------------------~~d--------~~~~~~ 260 (507)
..+|+|||+|.+|+-+|..|.+.|.. +.++++++.+.. .+. .++...
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 35799999999999999999999998 999998864420 010 136677
Q ss_pred HHHHHHhcCcE--EEcCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCC--CCCCCCCCcccCceecCCC
Q 010573 261 FQRSLEKQKMK--FMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRT--PFTAGLGLDKIGVETDKMG 334 (507)
Q Consensus 261 ~~~~l~~~Gv~--i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~--p~~~~l~~~~~gl~~~~~G 334 (507)
+...+++.++. +..++.|+.+..++ +...|++.+ ++..+ +.+|.||+|+|.- |+.+. -.|++.- .|
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~--~~~~~-~~a~~vV~ATG~~~~P~iP~----~~G~~~f-~g 159 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSD--GGTGE-LTADFVVVATGHLSEPYIPD----FAGLDEF-KG 159 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcC--CCeee-EecCEEEEeecCCCCCCCCC----CCCccCC-Cc
Confidence 77778776654 33445565555554 355666542 11222 7899999999962 22221 1233321 23
Q ss_pred CeecC----CCCCCCCCCeEEecCCCCC
Q 010573 335 RIPVN----ERFATNIPGVYAIGDVIPG 358 (507)
Q Consensus 335 ~i~Vd----~~~~t~~~~IyA~GD~a~~ 358 (507)
.+.-. +...-.-++|-+||--++.
T Consensus 160 ~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 160 RILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred eEEchhcCCCccccCCCeEEEECCCccH
Confidence 33321 1123355789999966643
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=77.03 Aligned_cols=91 Identities=26% Similarity=0.403 Sum_probs=70.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+. + .+++++.....+.+++.|+++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 47999999999999999999999999999999887642 1 35677777677888899999999887631
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.+.+. .....+|.|++|+|..+.
T Consensus 386 -----~~~~~------~l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 -----DITFS------DLTSEYDAVFIGVGTYGM 408 (639)
T ss_pred -----cCCHH------HHHhcCCEEEEeCCCCCC
Confidence 11111 123468999999998754
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0002 Score=78.61 Aligned_cols=90 Identities=27% Similarity=0.272 Sum_probs=65.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 284 (507)
+++|+|||||+.|+.+|..|++.|.+|+++++.+.+. | .++.+......+.+.+.||+++++....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 5799999999999999999999999999999876542 1 2344555555567778899998774210
Q ss_pred CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 285 ~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+.+. +.....+|.|++|+|.++..
T Consensus 612 -----~~ve-----~l~~~gYDaVIIATGA~~~~ 635 (1012)
T TIGR03315 612 -----LTVA-----ELKNQGYKYVILAIGAWKHG 635 (1012)
T ss_pred -----eEhh-----hhhcccccEEEECCCCCCCC
Confidence 1111 12345689999999988643
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=72.17 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=37.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~ 84 (507)
...+|||||||.||++||.+|.+.| .+++|+|..+++||....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEee
Confidence 3458999999999999999999776 579999999999998654
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00048 Score=64.33 Aligned_cols=42 Identities=36% Similarity=0.654 Sum_probs=35.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHC----CCcEEEEecCCCC---------Cceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGAL---------GGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~~~~---------GG~~~~ 84 (507)
..||+|||||-.|.+.|..|+++ |++|++||+++.. ||.|..
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQ 140 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQ 140 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeee
Confidence 57999999999999999999875 7999999997643 677754
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0007 Score=68.58 Aligned_cols=97 Identities=15% Similarity=0.262 Sum_probs=69.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCccCCC-----CCH-------------HH-------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVPS-----MDG-------------EI------------------- 257 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~~~~-----~d~-------------~~------------------- 257 (507)
+|+|||+|..|+-+|..|.+.| .+|+++++.+.+... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 599999987664210 000 00
Q ss_pred ----------------------HHHHHHHHHhc--CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 258 ----------------------RKQFQRSLEKQ--KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 258 ----------------------~~~~~~~l~~~--Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
...+.+.|.+. ...+++++++++++.+++++.+++. ++.++.+|.||.|.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~-----~g~~~~ad~vVgADG 156 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFT-----DGTEYRCDLLIGADG 156 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEc-----CCCEEEeeEEEECCC
Confidence 00111222211 4557789999999887788888775 456799999999999
Q ss_pred CCCC
Q 010573 314 RTPF 317 (507)
Q Consensus 314 ~~p~ 317 (507)
....
T Consensus 157 ~~S~ 160 (414)
T TIGR03219 157 IKSA 160 (414)
T ss_pred ccHH
Confidence 7764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=68.99 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=65.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC-cc--CC-----------------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA-DI--VP----------------------------------------- 251 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~--~~----------------------------------------- 251 (507)
.|+|||||+.|+++|..+++.|.+|.++++.. .+ ++
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s 85 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS 85 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence 59999999999999999999999999998763 22 00
Q ss_pred ----------CCCHH-HHHHHHHHHHhc-CcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 010573 252 ----------SMDGE-IRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 252 ----------~~d~~-~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.+|.. ....+.+.+++. |++++ ...++++..+++.+. |.+. ++..+.++.||+|+|..
T Consensus 86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~-----dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQ-----DGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEEC-----CCCEEECCEEEEeeCcc
Confidence 00000 122333444444 78875 566787766666554 5543 45789999999999953
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0017 Score=59.38 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=35.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCC------CcEEEEecCCCCCce
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGALGGT 81 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g------~~V~lie~~~~~GG~ 81 (507)
+.+..+++|||||..|.++|+.|.+.+ ..|+|||+....||.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 334578999999999999999999986 789999997766643
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0002 Score=76.80 Aligned_cols=91 Identities=29% Similarity=0.408 Sum_probs=68.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .+++++.....+.+++.|++++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46899999999999999999999999999999876542 2 24566666667778889999999886621
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.+.+. .....+|.|++|+|..+.
T Consensus 403 -----~i~~~------~~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 403 -----DISLE------SLLEDYDAVFVGVGTYRS 425 (654)
T ss_pred -----cCCHH------HHHhcCCEEEEeCCCCCC
Confidence 11111 112468999999997643
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00072 Score=71.63 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
.+++|||||+.|+..|..+++.|.+|+||++.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 5799999999999999999999999999998654
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00012 Score=76.86 Aligned_cols=36 Identities=36% Similarity=0.545 Sum_probs=33.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
.+.++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 356899999999999999999999999999999964
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00033 Score=72.40 Aligned_cols=80 Identities=26% Similarity=0.298 Sum_probs=63.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~ 292 (507)
.+++++|+|+|.+|+++|..|.+.|.+|+++++.+. +....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~------------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT------------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc-------------
Confidence 467999999999999999999999999999986642 334455677888899998765432
Q ss_pred eecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 293 EPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 293 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
....+|.||+++|..|+.+.
T Consensus 75 --------~~~~~D~Vv~s~Gi~~~~~~ 94 (480)
T PRK01438 75 --------LPEDTDLVVTSPGWRPDAPL 94 (480)
T ss_pred --------ccCCCCEEEECCCcCCCCHH
Confidence 02348999999999999874
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=65.89 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=71.2
Q ss_pred eEEEEcCcHHHHHHHHHH--HhcCCeeEEEcccCcc--CC-----CC-------C-------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVW--ARLGSEVTVVEFAADI--VP-----SM-------D------------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l--~~~g~~Vtlv~~~~~~--~~-----~~-------d------------------------- 254 (507)
.|+|||+|+.|+-+|..+ .+.|.+|.++++.+.. -. .. +
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 379999999999999999 7889999999876554 10 00 0
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 ------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 ------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+.+.+.+.+...| .++.++.|++++..++...+.+. +++++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~~~~v~~~-----~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGDGVLVVLA-----DGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCceEEEEEC-----CCCEEEeeEEEECCCcccc
Confidence 234445556666445 45678999999888776667665 5669999999999996654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00068 Score=67.45 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=36.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC----CCcEEEEecCCCCCceeccc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCLNV 85 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~~~~GG~~~~~ 85 (507)
.+.=|||+|.|+|+||..|.|- |.+|+|+|+.+..||.+.-.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~ 48 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGA 48 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCC
Confidence 5788999999999999999986 57999999999999876543
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=67.43 Aligned_cols=98 Identities=17% Similarity=0.406 Sum_probs=71.2
Q ss_pred eEEEEcCcHHHHHHHHHHHh----cCCeeEEEcccC--ccC------C---------CCC--------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWAR----LGSEVTVVEFAA--DIV------P---------SMD-------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~----~g~~Vtlv~~~~--~~~------~---------~~d-------------------- 254 (507)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... + .+.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 48999999999999999998 799999999832 110 0 000
Q ss_pred -----------------------------------HHHHHHHHHHHHhc---CcEEEcCceEEEEEEc-------CCeEE
Q 010573 255 -----------------------------------GEIRKQFQRSLEKQ---KMKFMLKTKVVGVDLS-------GDGVK 289 (507)
Q Consensus 255 -----------------------------------~~~~~~~~~~l~~~---Gv~i~~~~~v~~i~~~-------~~~v~ 289 (507)
..+.+.+.+.+++. +++++.++++++++.+ ++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 12333345555555 4999999999999642 35667
Q ss_pred EEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 290 LTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 290 v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+++. +++++.+|+||-|.|.....
T Consensus 162 v~~~-----~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 162 ITLS-----DGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEc-----CCCEEEeeEEEEecCCCChh
Confidence 7764 45689999999999988765
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00019 Score=73.90 Aligned_cols=39 Identities=31% Similarity=0.301 Sum_probs=36.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
|||+|||+||+|+.+|..|++.|++|++||+....||.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999988887643
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00017 Score=67.10 Aligned_cols=43 Identities=35% Similarity=0.589 Sum_probs=38.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC--CCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--ALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~--~~GG~~~~ 84 (507)
..+||+|||+|.||+-||.+|+..|++|+|+|++. .+||+..+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfW 48 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFW 48 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeee
Confidence 45899999999999999999999999999999965 57777654
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00062 Score=64.71 Aligned_cols=98 Identities=16% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||.-||..+.--.|+|.+|++||-.+.+||...
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD--------------------------------------- 251 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD--------------------------------------- 251 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC---------------------------------------
Confidence 46899999999999999999999999999998777766310
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCC-EEEEEc---cCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPS-EVSVDT---IEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~-~~~v~~---~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
.++...++..+++.+++|..++ +... +.+ .+.+.+ .+++..++++|.+++++|-+|.
T Consensus 252 ----------~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 252 ----------GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred ----------HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 1122333556777899998885 3332 222 455543 3456789999999999999986
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0018 Score=64.93 Aligned_cols=103 Identities=20% Similarity=0.332 Sum_probs=71.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--C-----CCC--------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P-----SMD-------------------------------- 254 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~-----~~d-------------------------------- 254 (507)
+.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . .+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 3579999999999999999999999999999877411 0 000
Q ss_pred ---------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEE-cCCeEEEEEeecCCCceEEEEcCEEEEee
Q 010573 255 ---------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (507)
Q Consensus 255 ---------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~v~~~~~~~g~~~~i~~D~vi~a~ 312 (507)
..+...+.+.+.+.|+.++++.+++.+.. +++...|++.. +|...++.+|+||-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~--~g~~~~i~adlvIGAD 159 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFER--DGERHRLDCDFIAGCD 159 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEE--CCeEEEEEeCEEEECC
Confidence 11123334445556888888877766643 44555666631 2333479999999999
Q ss_pred cCCCCC
Q 010573 313 GRTPFT 318 (507)
Q Consensus 313 G~~p~~ 318 (507)
|.....
T Consensus 160 G~~S~V 165 (390)
T TIGR02360 160 GFHGVS 165 (390)
T ss_pred CCchhh
Confidence 987754
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=77.46 Aligned_cols=43 Identities=33% Similarity=0.573 Sum_probs=39.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
...+|+|||||++|+.||..|++.|++|+|+|+++++||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcce
Confidence 4579999999999999999999999999999999999988753
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0025 Score=64.43 Aligned_cols=101 Identities=22% Similarity=0.363 Sum_probs=71.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----CC--------------C--------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----SM--------------D-------------------- 254 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----~~--------------d-------------------- 254 (507)
..+|+|||+|++|+-+|..|++.|.+|+++++.+.... .+ +
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 35799999999999999999999999999997643200 00 0
Q ss_pred ----------------------HHHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCce-EEEEcCEEE
Q 010573 255 ----------------------GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEK-TILEADVVL 309 (507)
Q Consensus 255 ----------------------~~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~-~~i~~D~vi 309 (507)
..+.+.+.+.+.+ .|++++.++++++++.+++.+. +.+.. . ++ .++.+|.||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~-~--~g~~~i~a~~vI 162 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART-P--DGPGEIRADLVV 162 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc-C--CCcEEEEeCEEE
Confidence 1222333444444 4899999999999987766653 44432 1 23 479999999
Q ss_pred EeecCCCC
Q 010573 310 VSAGRTPF 317 (507)
Q Consensus 310 ~a~G~~p~ 317 (507)
.|.|....
T Consensus 163 ~AdG~~S~ 170 (407)
T PRK06185 163 GADGRHSR 170 (407)
T ss_pred ECCCCchH
Confidence 99998764
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0027 Score=62.69 Aligned_cols=100 Identities=15% Similarity=0.212 Sum_probs=70.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--C-------CCCHH------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P-------SMDGE------------------------------ 256 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~-------~~d~~------------------------------ 256 (507)
.|+|||+|+.|+-+|..|++. .+|+++++.+... + .+.+.
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 9999999776320 0 00000
Q ss_pred --------------H-HHHHHHH---HHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 257 --------------I-RKQFQRS---LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 257 --------------~-~~~~~~~---l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+ ...+.+. ..+.|++++.++.++.++.+++++.+++.. +++..++.+|.||.|.|.....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~--~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRA--DGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEec--CCcEEEEEeCEEEECCCCCcHH
Confidence 0 1111122 234689999999999998877887777532 2333479999999999987644
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=73.57 Aligned_cols=97 Identities=25% Similarity=0.410 Sum_probs=28.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----------C--------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------S-------------------------------- 252 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~-------------------------------- 252 (507)
.|+|||||+.|+-.|..+++.|.+|.|+++.+.+.. .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 489999999999999999999999999998876520 0
Q ss_pred ------CCHHH-HHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 253 ------MDGEI-RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 253 ------~d~~~-~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
++++. ...+.+.+++.|+++++++.+.++..+++.+. |.+.+.+ | ..++.++.+|-|+|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~-g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKS-G-RKEIRAKVFIDATGD 148 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccccc
Confidence 11111 12345666678999999999999988776654 5554322 3 578999999999994
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0023 Score=64.28 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=67.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC------------CC--C---------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------SM--D--------------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------~~--d--------------------------- 254 (507)
+|+|||+|+.|+-+|..+++.|.+|.++++.+.... .+ +
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 589999999999999999999999999997643210 00 0
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCceEEEEEE---cCCeEEEEEeecC----CCceEEEEcCEEEEeecCCC
Q 010573 255 -----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDL---SGDGVKLTLEPAA----GGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 -----------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~---~~~~v~v~~~~~~----~g~~~~i~~D~vi~a~G~~p 316 (507)
..+-+.+.+...+.|++++.++ +..++. .++...+++.... .++..++.++.||.|+|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 0111234445566799997664 666542 2334455543211 13345799999999999876
Q ss_pred CC
Q 010573 317 FT 318 (507)
Q Consensus 317 ~~ 318 (507)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 44
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0041 Score=63.40 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC------------C--CC------------------------
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------S--MD------------------------ 254 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------~--~d------------------------ 254 (507)
..-.|+|||+|+.|+-+|..|++.|.+|.++++.+.... . ++
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~ 117 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 117 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEec
Confidence 345799999999999999999999999999997643110 0 00
Q ss_pred --------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEc---CCeEEEEEeecC----CCceEEEEcCEEEEeec
Q 010573 255 --------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS---GDGVKLTLEPAA----GGEKTILEADVVLVSAG 313 (507)
Q Consensus 255 --------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~---~~~v~v~~~~~~----~g~~~~i~~D~vi~a~G 313 (507)
..+-+.+.+...+.|++++.+ .+++++.. ++.+.+++.... +++..++.+|.||-|.|
T Consensus 118 ~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 118 KTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred ccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 011223444556678998754 46666532 234556654310 13346899999999999
Q ss_pred CCCCC
Q 010573 314 RTPFT 318 (507)
Q Consensus 314 ~~p~~ 318 (507)
.....
T Consensus 197 ~~S~v 201 (450)
T PLN00093 197 ANSRV 201 (450)
T ss_pred cchHH
Confidence 76543
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00022 Score=79.37 Aligned_cols=44 Identities=32% Similarity=0.652 Sum_probs=40.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
...++|+|||||++|+++|..|++.|++|+|+|+++.+||.+..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceee
Confidence 34589999999999999999999999999999999999998754
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00015 Score=69.94 Aligned_cols=63 Identities=16% Similarity=0.339 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCcEEEcCceEEEEEEc--CCeEE-EEEeecCCC-ceEEEEcCEEEEeecCCCCCC
Q 010573 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGG-EKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 257 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~-v~~~~~~~g-~~~~i~~D~vi~a~G~~p~~~ 319 (507)
....+...++..++++++++.|++|..+ +..+. |++.+.... ....+.++.||+|.|.--...
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~ 261 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPR 261 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHH
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChh
Confidence 3455667776669999999999999543 44443 666554332 245678999999999644333
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.001 Score=68.69 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+++|||+|++|+++|..|++.|++|+++|+.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999973
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00095 Score=66.27 Aligned_cols=93 Identities=25% Similarity=0.370 Sum_probs=62.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccCC-----CCCHHHH----H-------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP-----SMDGEIR----K------------------------- 259 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~-----~~d~~~~----~------------------------- 259 (507)
.++|||+|..|+.+|..|.+. |.+|.++++.+...+ .++.++. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 379999999999999999987 999999998764322 1111111 0
Q ss_pred ---------HHHHH-HHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 260 ---------QFQRS-LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 260 ---------~~~~~-l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.+.+. +++.+..++++++|+++ +.+++.+ . +++++.+|.||.|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v--~~~~v~l--~-----dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGL--DADGVDL--A-----PGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEE--eCCEEEE--C-----CCCEEEeeEEEECCCCCCC
Confidence 11122 22223336678888888 3445444 3 5678999999999998864
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0039 Score=66.40 Aligned_cols=103 Identities=16% Similarity=0.264 Sum_probs=72.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhc-CCeeEEEcccCccCCC-----------------------------------CC---
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVPS-----------------------------------MD--- 254 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~-----------------------------------~d--- 254 (507)
.-+|+|||+|+.|+-+|..|++. |.+|+++++.+..... ++
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 34799999999999999999995 9999999877543200 00
Q ss_pred -----------------------------HHHHHHHHHHHHhcC--cEEEcCceEEEEEEcC---CeEEEEEeecC---C
Q 010573 255 -----------------------------GEIRKQFQRSLEKQK--MKFMLKTKVVGVDLSG---DGVKLTLEPAA---G 297 (507)
Q Consensus 255 -----------------------------~~~~~~~~~~l~~~G--v~i~~~~~v~~i~~~~---~~v~v~~~~~~---~ 297 (507)
..+.+.+.+.+.+.| +++..+++++.++.++ ..+++++++.. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 012333445555555 5778899999997654 34778876432 2
Q ss_pred CceEEEEcCEEEEeecCCC
Q 010573 298 GEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 298 g~~~~i~~D~vi~a~G~~p 316 (507)
|..+++.+|+||-|-|.+.
T Consensus 192 g~~~tv~A~~lVGaDGa~S 210 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARS 210 (634)
T ss_pred CceEEEEeCEEEECCCCch
Confidence 3346899999999999664
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0036 Score=70.29 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=70.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC----------CC-HHHHHHHHHHHHhc-CcEEEcCceEEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS----------MD-GEIRKQFQRSLEKQ-KMKFMLKTKVVGV 281 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------~d-~~~~~~~~~~l~~~-Gv~i~~~~~v~~i 281 (507)
..+|+|||+|+.|+..|..+++.|.+|++++..+.+... .+ .+....+.+.+++. +++++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 467999999999999999999999999999987654211 11 23334455556555 5999999999887
Q ss_pred EEcCCeEE-EE-Eee----c----CCCceEEEEcCEEEEeecCCCCCC
Q 010573 282 DLSGDGVK-LT-LEP----A----AGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 282 ~~~~~~v~-v~-~~~----~----~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
... +.+. +. ... . ......++.+|.||+|||..|...
T Consensus 243 ~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YDH-NTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ecC-CeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 432 2111 11 000 0 001122689999999999988654
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=62.06 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=32.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
...+||+|||||.+|-+.|+.|+|.|.+|.+|||+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 45689999999999999999999999999999994
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00047 Score=69.59 Aligned_cols=89 Identities=34% Similarity=0.430 Sum_probs=70.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 284 (507)
+++|.|||+|+.|+.+|..|++.|+.||++++.+... | .+++++.+...+.|++.|++|+.++++-.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---- 198 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---- 198 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC----
Confidence 5899999999999999999999999999999887752 2 45678888999999999999999887631
Q ss_pred CCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 285 ~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.++++ ...-+.|.|++++|..-
T Consensus 199 ----~it~~------~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 199 ----DITLE------ELLKEYDAVFLATGAGK 220 (457)
T ss_pred ----cCCHH------HHHHhhCEEEEeccccC
Confidence 12221 12334599999999643
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=70.14 Aligned_cols=91 Identities=24% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceE-EEE
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKV-VGV 281 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v-~~i 281 (507)
..+++|+|||+|++|+.+|..+++.|.+|+++++.+.+. + .++.++...-.+.+++.|++++.++.+ ..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 347899999999999999999999999999999776542 1 234455555556677889999888765 222
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+ .....+|.|++|+|..+.
T Consensus 215 ~~~---------------~~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 215 TLE---------------QLEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CHH---------------HHHhhCCEEEEeeCCCCC
Confidence 110 011247999999998754
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0063 Score=63.24 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=73.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-------C--------------------------------CC-
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------S--------------------------------MD- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~--------------------------------~d- 254 (507)
-.|+|||+|..|+-.|..+++.|.+|.++++.+.... . .+
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~ 141 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK 141 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 3699999999999999999999999999987654210 0 00
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCC
Q 010573 255 ------------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD 286 (507)
Q Consensus 255 ------------------------------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~ 286 (507)
..+...+.+.+++.|++++++++++++..+++
T Consensus 142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g 221 (506)
T PRK06481 142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG 221 (506)
T ss_pred HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC
Confidence 01233445556678999999999999986665
Q ss_pred eEE-EEEeecCCCceEEEEcCEEEEeec-CCCCCCC
Q 010573 287 GVK-LTLEPAAGGEKTILEADVVLVSAG-RTPFTAG 320 (507)
Q Consensus 287 ~v~-v~~~~~~~g~~~~i~~D~vi~a~G-~~p~~~~ 320 (507)
.+. +.+.. .+++...+.++.||+|+| +.+|.+.
T Consensus 222 ~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m 256 (506)
T PRK06481 222 KVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDM 256 (506)
T ss_pred EEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHH
Confidence 543 44432 222345799999999997 6666543
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00038 Score=67.14 Aligned_cols=40 Identities=38% Similarity=0.475 Sum_probs=35.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--cEEEEecCCCCCcee
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTC 82 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~ 82 (507)
.++|+|+|||.+||++|++|++++. .|+|+|+.+++||..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 4689999999999999999999965 467799999999954
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00042 Score=67.20 Aligned_cols=57 Identities=33% Similarity=0.542 Sum_probs=48.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhh
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~ 97 (507)
...||++|||+|.-|+.||..|+|.|.+|+++|++...||-......+|...+....
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~s 68 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRAS 68 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHH
Confidence 457999999999999999999999999999999988899988887777754443333
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.001 Score=70.88 Aligned_cols=90 Identities=30% Similarity=0.325 Sum_probs=67.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+... + .+.+++.....+.+++.|++++.++.+..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 47899999999999999999999999999998876541 1 234455555567788899999998877320
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+.++ .....+|.||+|+|..+
T Consensus 360 ------~~~~------~~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 ------IPLE------ELREKHDAVFLSTGFTL 380 (604)
T ss_pred ------CCHH------HHHhcCCEEEEEcCcCC
Confidence 1111 12357999999999764
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00018 Score=62.54 Aligned_cols=46 Identities=39% Similarity=0.498 Sum_probs=37.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceecccccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCI 88 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~ 88 (507)
..||+|||+|.+|++||+..++. +.+|++||..-.+||-.+.-|..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQL 123 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQL 123 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchh
Confidence 46999999999999999999855 78999999976777654444443
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=71.12 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
..+++|+|||+|+.|+.+|..|++.|.+||+++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 35799999999999999999999999999999975
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0069 Score=52.07 Aligned_cols=41 Identities=20% Similarity=0.439 Sum_probs=31.8
Q ss_pred CcEEE-cCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 269 KMKFM-LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 269 Gv~i~-~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
|+++. ...+|+.+...+++..+.+. ++..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~~v~~~-----~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGYRVVTA-----DGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcEEEEEC-----CCCEEEeCEEEECCCC
Confidence 54444 35688999888888777765 5678999999999996
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0053 Score=62.63 Aligned_cols=57 Identities=26% Similarity=0.466 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
...+.+.+..++.||+++.++ |..+..++++. .|++. +++++.+|.+|-|+|++...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~-----~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLD-----DGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEET-----TSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEEC-----CCCEEEEeEEEECCCccchh
Confidence 455566777778899999875 66666555543 35543 56799999999999987654
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.007 Score=62.84 Aligned_cols=96 Identities=23% Similarity=0.384 Sum_probs=64.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc---CC---------------C-------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI---VP---------------S------------------------- 252 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~---~~---------------~------------------------- 252 (507)
.|+|||+|+.|+++|..+++.|.+|.++++.... ++ .
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 4899999999999999999999999999865311 00 0
Q ss_pred -----------CCH-HHHHHHHHHHHhc-CcEEEcCceEEEEEEc-CCeE-EEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 253 -----------MDG-EIRKQFQRSLEKQ-KMKFMLKTKVVGVDLS-GDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 253 -----------~d~-~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~-~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+|+ .+...+.+.+++. ++.++.+ .++.+..+ ++.+ .|.+. ++..+.+|.||+|+|...+
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~-----~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQ-----DGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEEC-----CCCEEECCEEEEccCcccC
Confidence 011 1122344555555 7888754 56666443 3333 35543 4558999999999998753
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0015 Score=65.09 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=31.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
+|+|||||..|+|+|..|++.|.+|+++++++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999987764
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00058 Score=71.92 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=32.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHH-CCCcEEEEecCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRG 76 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~ 76 (507)
...||+||||+|+||..+|.+|++ .|++|+|+|+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 345899999999999999999999 799999999964
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.018 Score=51.12 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=66.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-------CCC-------------------------------H
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMD-------------------------------G 255 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~~d-------------------------------~ 255 (507)
...|+|||+|++|+-+|..|++.|.+|.+++++..+.. .|. .
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 35699999999999999999999999999998765421 111 1
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcC-CeEE-EEEee----cC--CCceEEEEcCEEEEeecCCCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEP----AA--GGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~----~~--~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+....+....-+.|++++..+.+..+-..+ +++. +.+.- .. .-|.-.+.+..||-|||.....-
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~ 168 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVV 168 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSST
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHH
Confidence 233333333445899999999998876555 5554 33220 00 12456899999999999877654
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0053 Score=62.72 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=44.5
Q ss_pred CCHH-HHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 253 MDGE-IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 253 ~d~~-~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+||. +-+.+....++.|..++.++.|+++....++.. |++ ....+++..+|-|+|+...
T Consensus 184 ~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT------~~G~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 184 MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVET------PHGSIETECVVNAAGVWAR 244 (856)
T ss_pred cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceec------cCcceecceEEechhHHHH
Confidence 4554 556677788899999999999999976655443 443 2347999999999998763
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0089 Score=62.02 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=30.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 3469999999999999999999999999999864
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0072 Score=63.88 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
..+.+|+|||||..|+-+|..|.+.|.+|+++++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 346789999999999999999999999999999865
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.002 Score=58.55 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=67.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC----------CCC----------HHHHHHHHH------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------SMD----------GEIRKQFQR------------ 263 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~~d----------~~~~~~~~~------------ 263 (507)
+|+|||+|..|+-+|..|+..|.+|++++++.-+.. .+| +-..+.++.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 689999999999999999999999999998765421 111 111111111
Q ss_pred -----------------------------HHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 264 -----------------------------SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 264 -----------------------------~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.+-....++.++++|+++...++..+++.++ .++..++|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~----g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDD----GTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecC----CCcccccceEEEecCC
Confidence 1122355677888899988888888888742 4467899999999865
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0021 Score=63.18 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=60.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-------CCHH------HHHHHHHHHHhcCcEEEcCceEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------MDGE------IRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------~d~~------~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
.++++|||||..|++.|..|++.|.+|+++++.+.+... |+.. +.-.+.+.-...+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 689999999999999999999999999999999877321 2211 112222333445899999999999
Q ss_pred EEEcCCeEEEEEe
Q 010573 281 VDLSGDGVKLTLE 293 (507)
Q Consensus 281 i~~~~~~v~v~~~ 293 (507)
+.+.-+..++.++
T Consensus 204 v~G~vGnF~vki~ 216 (622)
T COG1148 204 VSGSVGNFTVKIE 216 (622)
T ss_pred ecccccceEEEEe
Confidence 9877666666543
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.02 Score=56.36 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=68.9
Q ss_pred CCcEEEEecCCCCC--------ceeccccccchhhhh----hhhHH---------HHHHHhhhhhCCcccCccccChHHH
Q 010573 66 GLKTTCIEKRGALG--------GTCLNVGCIPSKALL----HSSHM---------YHEAMHSFASHGVKFSSVEVDLPAM 124 (507)
Q Consensus 66 g~~V~lie~~~~~G--------G~~~~~~~~p~~~~~----~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~ 124 (507)
|.+|+|+|+++++| |.|+....-+...+. ....+ ......++.+.|+..... +..++
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e--~~grv 78 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVG--SSGRV 78 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEEC--CCCEE
Confidence 57899999998885 888766643211111 11111 234556677778753210 01112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC
Q 010573 125 MAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
++...+ ...+.+.+...+++.+|+++.+ .+..++.....+.+..+ ...+.+|+||||||+.+
T Consensus 79 fP~S~~-A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~-~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 79 FPVEMK-AAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDG-QSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCCC-HHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCC-ceEEecCEEEEcCCCcc
Confidence 221110 1233444556777899999988 45666554566665432 24689999999999864
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0048 Score=57.69 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=32.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
..|-|||||.||-.||++++++|..|.|.|-++.-+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 468999999999999999999999999999865443
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.019 Score=60.62 Aligned_cols=54 Identities=15% Similarity=0.149 Sum_probs=37.0
Q ss_pred HHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 263 ~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+.+++.||+++.++.++++..+++.+. +...+..++....+.++.||+|+|-..
T Consensus 137 ~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 137 EQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 344556899999999999876666554 333232334445789999999999543
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.02 Score=61.06 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=36.7
Q ss_pred HHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 264 SLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 264 ~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.+++.||+++.++.++++..+++.+. +.+.+..++....+.++.||+|||-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45567899999999999876555554 4444333444457899999999985
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.024 Score=59.76 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=37.6
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
+.+.+++.||+++.++.++++..+++.+. +...+..++....+.++.||+|||-
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 44445556889999999998876666554 4444333444457899999999994
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.027 Score=57.49 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEcC-CeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+.+.+++.|++++++++++++..++ +.+. +.+.+ .++....+.++.||+|+|-..
T Consensus 135 ~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 135 KLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCCCC
Confidence 34455667899999999999998754 3333 44432 222334578999999999433
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.022 Score=56.61 Aligned_cols=32 Identities=41% Similarity=0.631 Sum_probs=28.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 48899999999999999999999999988653
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=50.64 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=72.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc--------Ccc--------CCC-----CCHHHHHHHHHHHHhcCcE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--------ADI--------VPS-----MDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--------~~~--------~~~-----~d~~~~~~~~~~l~~~Gv~ 271 (507)
...+|+|||+|+.+.-.|..+++...+..+++.. .++ .|. ..+++.+.++++-++.|.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 3568999999999999998888886655555421 111 122 3478888888888899999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+++ ..|.++........+.. +.+.+.+|.||+|+|.....-
T Consensus 87 i~t-EtVskv~~sskpF~l~t------d~~~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 87 IIT-ETVSKVDLSSKPFKLWT------DARPVTADAVILATGASAKRL 127 (322)
T ss_pred eee-eehhhccccCCCeEEEe------cCCceeeeeEEEecccceeee
Confidence 884 56777766666666654 456899999999999776543
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.035 Score=58.89 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=26.9
Q ss_pred EEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 217 LVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 217 vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 5899999999999999988899999888765
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0023 Score=66.74 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=43.5
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCC-ceEEEEcCEEEEeecCCCCCCCC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGG-EKTILEADVVLVSAGRTPFTAGL 321 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g-~~~~i~~D~vi~a~G~~p~~~~l 321 (507)
+...++..++.+.+++.++.+..++++.+ +++.....+ .......+.||+|.|...+..+|
T Consensus 209 l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 209 LKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred chhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 44456778899999999999998877655 555432222 24456789999999987765543
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.046 Score=58.30 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=30.9
Q ss_pred cEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 270 MKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 270 v~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
|+++.++.++++..+++.+. +...+..++....+.++.||+|+|-
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 88888888888876555443 3222223444457899999999995
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.035 Score=57.10 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=29.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999999999999999998874
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0013 Score=65.27 Aligned_cols=43 Identities=42% Similarity=0.562 Sum_probs=38.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
..+||+|||||..|..+|.-++-+|++++|||+++.-.|+.+.
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSk 108 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSK 108 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcccc
Confidence 4599999999999999999999999999999998877777543
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.038 Score=58.41 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=38.0
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+.+.+++.||+++.++.++++..+++.+. +...+..++....+.++.||+|+|-..
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 44455667899999999999876555443 332222334445789999999999654
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.057 Score=57.37 Aligned_cols=52 Identities=10% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHHHhcC-cEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 263 RSLEKQK-MKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 263 ~~l~~~G-v~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
+.+++.+ |+++.++.++++..+++.+. +...+..++....+.++.||+|+|-
T Consensus 140 ~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 140 EAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred HHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 3444554 99999999999875555443 3222222334457899999999994
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.052 Score=56.22 Aligned_cols=56 Identities=9% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHHHHHHHh-cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 259 KQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 259 ~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+.+.+++ .||+++.++.++++..+++.+. +.+.+. +....+.++.||+|+|-..
T Consensus 132 ~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 132 TTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNR--ETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEEC--CcEEEEEcCEEEECCCccc
Confidence 334455555 5899999999999876555554 444321 2235789999999999654
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0053 Score=44.29 Aligned_cols=31 Identities=39% Similarity=0.512 Sum_probs=28.5
Q ss_pred EEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 219 VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
|||+|.+|+-+|..|++.|.+|+++++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999998875
|
... |
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.049 Score=57.21 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCe-EE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~-v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
++...+.+.+++.||++++++.++++..++++ +. +...+..++....+.++.||+|||--.
T Consensus 135 ~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 135 EMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 34444556666789999999999998765544 43 343332344445789999999999644
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.021 Score=59.42 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=73.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC---CeeEEEcccCccC-------CCCC-----HHHHHHHHHHHHhcCcEEEcCceE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADIV-------PSMD-----GEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~~~-------~~~d-----~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..+++|||.|..|.-+...+.+.. .+||++...++.- +.+. +++.-.-.++.+++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 357999999999999988888743 4688876554431 1111 234444467889999999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.+..++.. |+.+ .+.++.+|.+|+|||..|....
T Consensus 83 ~~idr~~k~--V~t~-----~g~~~~YDkLilATGS~pfi~P 117 (793)
T COG1251 83 IQIDRANKV--VTTD-----AGRTVSYDKLIIATGSYPFILP 117 (793)
T ss_pred EEeccCcce--EEcc-----CCcEeecceeEEecCccccccC
Confidence 999665543 3322 6789999999999999998765
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.058 Score=50.98 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCcEEEcCceEEEEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 258 RKQFQRSLEKQKMKFMLKTKVVGVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 258 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~---~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.++..+++.|+.++.+..++.++.. +..+.|.+. ++..+.++.+|+++|-.-+.
T Consensus 156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt-----~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTT-----DGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEec-----cCCeeecceEEEEecHHHHh
Confidence 344567778899999999998887632 334444443 56679999999999976554
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.076 Score=55.90 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+...+.+.+++.|++++.++.++++..+ ++.+. +...+..++....+.++.||+|+|-..
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 34556666677789999999999999765 44443 333222334445689999999999754
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0096 Score=59.77 Aligned_cols=31 Identities=29% Similarity=0.564 Sum_probs=27.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
.|+|||||..|+|.|.+.+|.|.++.++...
T Consensus 6 DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 6 DVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred ceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 6999999999999999999999998877644
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.071 Score=56.43 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=32.2
Q ss_pred cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 010573 268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.||+++.++.++++..+++.+. +...+..++....+.++.||+|+|-.
T Consensus 151 ~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 151 DNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred CCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 5788888888888865555443 33222223333468999999999965
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0048 Score=64.89 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=31.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
..||+||||||.||..+|.+|.+ +.+|+|+|+..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 46999999999999999999999 69999999953
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.004 Score=65.25 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CcEEEEecCC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRG 76 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~ 76 (507)
|+||||+|.||..+|.+|++.+ ++|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999954
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.074 Score=56.97 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeec
Q 010573 263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 263 ~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
+.+.+.||+++.++.++++..+++.+. +.+.+..++....+.++.||+|||
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 345567899999999999876665543 444333345556788999999998
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.026 Score=54.89 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=31.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.+|+|||||..|+-.|..|.+.|.+|.+++.+..+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 57999999999999999999999999999886554
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=63.12 Aligned_cols=33 Identities=39% Similarity=0.488 Sum_probs=30.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~ 248 (507)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998875
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.089 Score=53.50 Aligned_cols=58 Identities=9% Similarity=0.161 Sum_probs=38.1
Q ss_pred HHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 257 IRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 257 ~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+.+.+.+.+++ .||++++++.++++..+++.+. +.... ++....+.++.||+|+|--.
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLK--DNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEE--CCcEEEEEcCeEEEccCccc
Confidence 33444555544 5999999999999876555543 23222 22334689999999999643
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.11 Score=55.42 Aligned_cols=56 Identities=9% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEE-cCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDL-SGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~-~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.+.+..++.||+++.++.++++.. +++.+. +...+..++....+.++.||+|||--
T Consensus 171 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 171 TLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 334445567888888888888765 344444 43333334555678999999999743
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.028 Score=54.99 Aligned_cols=104 Identities=16% Similarity=0.253 Sum_probs=60.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCcc-CC-C--CC------------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI-VP-S--MD------------------------------------ 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~-~~-~--~d------------------------------------ 254 (507)
.++.||.|+.++-+|..+...+ .++.++++.+.+ +. . ++
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 4789999999999999998876 788888877764 11 0 00
Q ss_pred -----------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCC----eEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 255 -----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD----GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 255 -----------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~----~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.+..+.++-..++..-.+..+.+|++|+..++ ...|++.+ .+|+++++.+..||+++|..|..+
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCCCCCC
Confidence 12222222222233433777999999987654 36677654 556778999999999999998775
Q ss_pred C
Q 010573 320 G 320 (507)
Q Consensus 320 ~ 320 (507)
.
T Consensus 163 ~ 163 (341)
T PF13434_consen 163 E 163 (341)
T ss_dssp G
T ss_pred c
Confidence 3
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.018 Score=54.29 Aligned_cols=97 Identities=16% Similarity=0.308 Sum_probs=74.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEE-cc-cCccC------------CCCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVV-EF-AADIV------------PSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv-~~-~~~~~------------~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
+-.|+|||+|+.|...|-..+|.|.+.-++ +| +.+++ ....+.+...++++.++..|.++...+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 668999999999999998888887665443 22 11111 13457899999999999999999888888
Q ss_pred EEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 280 GVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 280 ~i~~~---~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
++++. ++-+.++++ ++-.+.+..+|++||.+
T Consensus 291 ~l~~a~~~~~l~ev~l~-----nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELA-----NGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCCccEEEEec-----CCceeccceEEEecCcc
Confidence 88763 445678887 67899999999999965
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.1 Score=54.79 Aligned_cols=33 Identities=39% Similarity=0.495 Sum_probs=27.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
-.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 458889999988888888888888888887654
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=55.17 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=37.6
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcC-CeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+.+.+++.||+++.++.++++..++ +.+. +...+..++....+.++.||+|||--.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 3444556788999888998887654 4443 433333344556789999999998543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.023 Score=58.20 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+++|||+|..|+++|..|++.|++|+++|++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999999999999999999999999999984
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.14 Score=54.16 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=31.9
Q ss_pred cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.+|+++.++.++++..+++.+. +...+..++....+.++.||+|+|-
T Consensus 146 ~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 146 PQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred CCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 4688888888888776555554 3322223444567899999999984
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.039 Score=53.34 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=65.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC----CCcEE-EEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL----GLKTT-CIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~----g~~V~-lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 116 (507)
....|-|||+|+-|-..|+.|++. |.+|. |++...
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~---------------------------------------- 385 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY---------------------------------------- 385 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----------------------------------------
Confidence 346899999999999999999875 44543 343310
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EE--EecCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GK--FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~--~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
+..+++ .+.+.++-.+..++.||+++.+. +. ..+...+.++++|| .++..|.||+|+|..|.
T Consensus 386 ---nm~kiL------Peyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG--~~l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 386 ---NMEKIL------PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDG--SELRTDLVVVAVGEEPN 450 (659)
T ss_pred ---Chhhhh------HHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCC--CeeeeeeEEEEecCCCc
Confidence 111111 12233333455667788887663 22 24566788899999 89999999999999985
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.06 Score=56.44 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=31.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.-+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3479999999999999999999999999999865
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.15 Score=54.38 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=36.1
Q ss_pred HHHHHhcCcEEEcCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 262 QRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 262 ~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+...+.||+++.++.++++..+ ++.+. +.+.+..++....+.++.||+|||--.
T Consensus 194 ~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 194 YGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 33444568888888888887654 44443 433333345556789999999998543
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.16 Score=53.69 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=31.8
Q ss_pred cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.+|+++.++.++++..+++.+. +...+..++....+.++.||+|+|-
T Consensus 147 ~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 147 PQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred CCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 3788888888888776555554 3222223344467899999999984
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.1 Score=55.19 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=34.1
Q ss_pred HHHHHHHh-cCcEEEcCceEEEEEEcC-Ce---EE-EEEeecCCCceEEEEcCEEEEeec
Q 010573 260 QFQRSLEK-QKMKFMLKTKVVGVDLSG-DG---VK-LTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 260 ~~~~~l~~-~Gv~i~~~~~v~~i~~~~-~~---v~-v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
.+.+.+++ .||+++.++.++++..++ ++ +. +.+.+..++....+.++.||+|||
T Consensus 160 ~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 160 ALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred HHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 33344443 388888888888876543 22 32 433333344445788999999998
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.19 Score=53.22 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=34.3
Q ss_pred HHhcCcEEEcCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 010573 265 LEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 265 l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.++.||+++.++.++++..+ ++.+. +...+..++....+.++.||+|||--
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGA 205 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCc
Confidence 44568888888888888764 44443 33323334455678899999999854
|
|
| >PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.013 Score=58.69 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
|...|||||+|.|..-.-.|..|++.|++|+-+|+++..||.|..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~as 45 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWAS 45 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-E
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhc
Confidence 456799999999999999999999999999999999999998754
|
This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A .... |
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.015 Score=56.18 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=33.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC----CCcEEEEecC--CCCCc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKR--GALGG 80 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~--~~~GG 80 (507)
...|||||+||||.|.+.|..|... .++|.|+|-. +++++
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~ 79 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD 79 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence 3479999999999999999999865 5799999986 44543
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.072 Score=52.59 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=28.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
-.|+|||||..|+|.|.+.+|.|.+.+++..+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 36999999999999999999999988877543
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.27 Score=52.11 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 46999999999999999999999999999854
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.018 Score=57.23 Aligned_cols=35 Identities=34% Similarity=0.370 Sum_probs=32.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
++|+|||||+.|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976654
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.18 Score=50.33 Aligned_cols=35 Identities=20% Similarity=0.398 Sum_probs=28.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcC---CeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~~ 249 (507)
.+|+|||+|++|+.+|..|.+.- ..|++++..+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 47999999999999999998752 238888877765
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.18 Score=52.41 Aligned_cols=45 Identities=33% Similarity=0.414 Sum_probs=31.5
Q ss_pred CCeecCCCCCCCCCCeEEecCCCC-CCC----c----HhHHHHHHHHHHHHHcC
Q 010573 334 GRIPVNERFATNIPGVYAIGDVIP-GPM----L----AHKAEEDGVACVEFLAG 378 (507)
Q Consensus 334 G~i~Vd~~~~t~~~~IyA~GD~a~-~~~----~----~~~A~~~g~~aa~~i~~ 378 (507)
|+|.||.+.+|++||+||+|+|++ +.. + ...+.-.|+.|++++..
T Consensus 333 GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 333 GGVKTNLDGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred CCEEECCCCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 667888888888888888888863 221 2 24556667778887754
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.05 Score=55.81 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=57.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~ 292 (507)
.+++++|+|+|.+|+.+|..|++.|.+|+++++.+. +.+ +...+.+.+.|++++.......
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~------~~~-~~~~~~l~~~~~~~~~~~~~~~------------ 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE------DQL-KEALEELGELGIELVLGEYPEE------------ 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch------HHH-HHHHHHHHhcCCEEEeCCcchh------------
Confidence 368999999999999999999999999999977541 122 2223445666777654332210
Q ss_pred eecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 293 EPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 293 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
..-.+|.||.++|..|+.+.
T Consensus 65 --------~~~~~d~vv~~~g~~~~~~~ 84 (450)
T PRK14106 65 --------FLEGVDLVVVSPGVPLDSPP 84 (450)
T ss_pred --------HhhcCCEEEECCCCCCCCHH
Confidence 01247999999999887653
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.28 Score=52.03 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCcEEEcCceEEEEEEcC----CeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSG----DGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 257 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~----~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+...+.+.+++.||+++.++.++++..++ +.+. +...+..++....+.++.||+|||-..
T Consensus 142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 44455666677899999999999986544 3433 333222333445789999999999654
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.21 Score=50.93 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCcEEEcCceEEEEEEc--CCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 258 RKQFQRSLEKQKMKFMLKTKVVGVDLS--GDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 258 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.+.+.+.+++.|++++++++++++..+ ++.+. +... ++...+.++.||+|+|-
T Consensus 126 ~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~----~~~~~i~ak~VIlAtGG 181 (432)
T TIGR02485 126 TNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTT----VGTHRITTQALVLAAGG 181 (432)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEc----CCcEEEEcCEEEEcCCC
Confidence 344555567789999999999998765 33333 3321 12357899999999994
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.25 Score=46.97 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeec
Q 010573 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338 (507)
Q Consensus 259 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~V 338 (507)
..+++.|.+.+|+++.+.. ++. +++.+.|+.. ++....+.+..+++|+|-+|..+.+ ....+.+|.+|+...
T Consensus 114 gIY~~~L~k~~V~~i~G~a--~f~-~~~~v~V~~~---d~~~~~Ytak~iLIAtGg~p~~PnI--pG~E~gidSDgff~L 185 (478)
T KOG0405|consen 114 GIYKRNLAKAAVKLIEGRA--RFV-SPGEVEVEVN---DGTKIVYTAKHILIATGGRPIIPNI--PGAELGIDSDGFFDL 185 (478)
T ss_pred HHHHhhccccceeEEeeeE--EEc-CCCceEEEec---CCeeEEEecceEEEEeCCccCCCCC--Cchhhccccccccch
Confidence 3455666667777765421 111 3445566553 2233458899999999999988753 444455556666655
Q ss_pred CCC
Q 010573 339 NER 341 (507)
Q Consensus 339 d~~ 341 (507)
.+.
T Consensus 186 ee~ 188 (478)
T KOG0405|consen 186 EEQ 188 (478)
T ss_pred hhc
Confidence 443
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.025 Score=58.24 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=33.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecCC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRG 76 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~ 76 (507)
....||.+|||||.||...|.+|.+. ..+|+|+|+..
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 45679999999999999999999997 68999999943
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.19 Score=49.62 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCeeEEEcccCccCCC--CCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEE
Q 010573 227 LEMGSVWARLGSEVTVVEFAADIVPS--MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE 304 (507)
Q Consensus 227 ~e~A~~l~~~g~~Vtlv~~~~~~~~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ 304 (507)
-++...|.+.|... ..+...++.|. -..++.+.+...+++.||+++++++|+++ ++++..+.+.. +...+.
T Consensus 57 ~d~~~fF~~~Gi~~-~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~----~~~~~~ 129 (376)
T TIGR03862 57 VALQDWARGLGIET-FVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPD----GQSTIE 129 (376)
T ss_pred HHHHHHHHHCCCce-EECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECC----CceEEe
Confidence 45667777888653 34555666663 34678888999999999999999999999 33445555431 234699
Q ss_pred cCEEEEeecCCC
Q 010573 305 ADVVLVSAGRTP 316 (507)
Q Consensus 305 ~D~vi~a~G~~p 316 (507)
+|.||+|+|-.+
T Consensus 130 a~~vIlAtGG~s 141 (376)
T TIGR03862 130 ADAVVLALGGAS 141 (376)
T ss_pred cCEEEEcCCCcc
Confidence 999999999764
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.022 Score=57.71 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=38.9
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
........|.+++++++|++|+.+++++.+++. +++++.+|.||+|+....
T Consensus 215 ~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~-----~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 215 LALAAEELGGEIRLNTPVTRIEREDGGVTVTTE-----DGETIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHHHHGGGEESSEEEEEEEEESSEEEEEET-----TSSEEEESEEEE-S-HHH
T ss_pred HHHHHhhcCceeecCCcceeccccccccccccc-----cceEEecceeeecCchhh
Confidence 334444456799999999999999999998886 455999999999987543
|
The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A .... |
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.44 Score=50.01 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=36.3
Q ss_pred HHHHHHHHh-cCcEEEcCceEEEEEEcC------CeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 259 KQFQRSLEK-QKMKFMLKTKVVGVDLSG------DGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 259 ~~~~~~l~~-~Gv~i~~~~~v~~i~~~~------~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
..+.+.+++ .||+++.++.++++..++ +.+. +.+.+..++....+.++.||+|+|-
T Consensus 142 ~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 205 (536)
T PRK09077 142 TTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGG 205 (536)
T ss_pred HHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCC
Confidence 334444444 389999888888775432 4443 4444333445567899999999984
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.026 Score=44.60 Aligned_cols=34 Identities=32% Similarity=0.423 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+..+++|||||..|..-+..|.+.|.+|+|+.++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3468999999999999999999999999999884
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.038 Score=47.49 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+|.|||||..|.+.|..|++.|++|+|+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 4899999999999999999999999999884
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.44 Score=50.45 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=35.2
Q ss_pred HHHhcCcEEEcCceEEEEEEcC-CeEE-EEEeecCCCceEEEEcC-EEEEeec-CCCCCC
Q 010573 264 SLEKQKMKFMLKTKVVGVDLSG-DGVK-LTLEPAAGGEKTILEAD-VVLVSAG-RTPFTA 319 (507)
Q Consensus 264 ~l~~~Gv~i~~~~~v~~i~~~~-~~v~-v~~~~~~~g~~~~i~~D-~vi~a~G-~~p~~~ 319 (507)
..++.|++++++++++++..++ +.+. +.... ++....+.+. .||+|+| +.-|.+
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~--~~~~~~i~a~~aVilAtGGf~~N~e 279 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDGAVVGAVVER--EGRTLRIGARRGVILATGGFDHDMD 279 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCCcEEEEEEEe--CCcEEEEEeceeEEEecCcccCCHH
Confidence 3446689999999999998753 4443 44432 3344568887 5888887 444443
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.28 Score=51.52 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHh-cCcEEEcCceEEEEEEcC--CeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 261 FQRSLEK-QKMKFMLKTKVVGVDLSG--DGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 261 ~~~~l~~-~Gv~i~~~~~v~~i~~~~--~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
+.+.+++ .||+++.++.++++..++ +.+. +.... ++....+.++.||+|||-
T Consensus 140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 140 LTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLY--QGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCC
Confidence 3344433 378888888877775542 3333 33321 333345889999999996
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.061 Score=54.18 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=32.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 68999999999999999999999999999988764
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.24 Score=49.55 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=28.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.|+|||+|..|+-+|..|.+. .+|+++.+.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 699999999999999999887 78888887654
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.048 Score=49.90 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++++|||+|..|.+.|..|.+.|++|++||++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 37999999999999999999999999999994
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.078 Score=53.71 Aligned_cols=36 Identities=17% Similarity=0.428 Sum_probs=32.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 457999999999999999999999999999998754
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.8 Score=48.25 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=35.9
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcC-EEEEeecCCC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEAD-VVLVSAGRTP 316 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D-~vi~a~G~~p 316 (507)
.+.+.+++.|++++++++++++..+++.+. +.... ++....+.++ .||+|+|--.
T Consensus 213 ~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 213 RMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVR--DGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEE--CCeEEEEEecceEEEecCCcc
Confidence 344556667889999999998876655554 44432 3344567784 6888887544
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.049 Score=55.93 Aligned_cols=38 Identities=34% Similarity=0.480 Sum_probs=35.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 250 (507)
..++|+|||+|.+|+-+|..|.++|.+|++++.++++.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVG 51 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcC
Confidence 46799999999999999999999999999999988874
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.16 Score=48.92 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=49.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccCC----------CCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP----------SMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~----------~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
.+|.|||+|+.|+-.|..|.+. +.+|+++++.+.+.. ..-+...+.+.+.++.....+..|..|
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v 96 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV 96 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee
Confidence 3899999999999999998874 589999998886531 122445566777788888888877666
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.25 Score=47.68 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=29.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
.|+|||+|..|.-+|..|.+.|.+|++++|.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4899999999999999999999999999986
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 507 | ||||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 0.0 | ||
| 3rnm_A | 495 | The Crystal Structure Of The Subunit Binding Of Hum | 1e-153 | ||
| 1zmc_A | 474 | Crystal Structure Of Human Dihydrolipoamide Dehydro | 1e-153 | ||
| 1zy8_A | 474 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 1e-152 | ||
| 2qae_A | 468 | Crystal Structure Analysis Of Trypanosoma Cruzi Lip | 1e-144 | ||
| 1jeh_A | 478 | Crystal Structure Of Yeast E3, Lipoamide Dehydrogen | 1e-141 | ||
| 3urh_A | 491 | Crystal Structure Of A Dihydrolipoamide Dehydrogena | 1e-138 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 1e-122 | ||
| 1lpf_A | 477 | Three-Dimensional Structure Of Lipoamide Dehydrogen | 1e-116 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 1e-116 | ||
| 2eq6_A | 464 | Crystal Structure Of Lipoamide Dehydrogenase From T | 3e-98 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 3e-97 | ||
| 1lvl_A | 458 | The Refined Structure Of Pseudomonas Putida Lipoami | 2e-74 | ||
| 1bhy_A | 482 | Low Temperature Middle Resolution Structure Of P64k | 1e-73 | ||
| 1ojt_A | 482 | Structure Of Dihydrolipoamide Dehydrogenase Length | 2e-73 | ||
| 3ii4_A | 466 | Structure Of Mycobacterial Lipoamide Dehydrogenase | 3e-67 | ||
| 2a8x_A | 464 | Crystal Structure Of Lipoamide Dehydrogenase From M | 7e-66 | ||
| 1zk7_A | 467 | Crystal Structure Of Tn501 Mera Length = 467 | 1e-50 | ||
| 2r9z_A | 463 | Glutathione Amide Reductase From Chromatium Gracile | 8e-50 | ||
| 1grt_A | 478 | Human Glutathione Reductase A34eR37W MUTANT Length | 1e-45 | ||
| 2grt_A | 461 | Human Glutathione Reductase A34e, R37w Mutant, Oxid | 1e-45 | ||
| 2aaq_A | 479 | Crystal Structure Analysis Of The Human Glutahione | 2e-45 | ||
| 3djg_X | 477 | Catalytic Cycle Of Human Glutathione Reductase Near | 2e-45 | ||
| 1bwc_A | 478 | Structure Of Human Glutathione Reductase Complexed | 2e-45 | ||
| 1xan_A | 461 | Human Glutathione Reductase In Complex With A Xanth | 2e-45 | ||
| 3ean_A | 499 | Crystal Structure Of Recombinant Rat Selenoprotein | 3e-44 | ||
| 1grg_A | 478 | Substrate Binding And Catalysis By Glutathione Redu | 4e-44 | ||
| 1dnc_A | 478 | Human Glutathione Reductase Modified By Diglutathio | 4e-44 | ||
| 1gsn_A | 478 | Human Glutathione Reductase Modified By Dinitrosogl | 7e-44 | ||
| 1h6v_A | 499 | Mammalian Thioredoxin Reductase Length = 499 | 1e-43 | ||
| 1k4q_A | 463 | Human Glutathione Reductase Inactivated By Peroxyni | 3e-43 | ||
| 1ges_A | 450 | Anatomy Of An Engineered Nad-Binding Site Length = | 1e-42 | ||
| 2hqm_A | 479 | Crystal Structure Of Glutathione Reductase Glr1 Fro | 4e-42 | ||
| 2zz0_A | 513 | Crystal Structure Of Human Thioredoxin Reductase I | 9e-42 | ||
| 2j3n_A | 519 | X-Ray Structure Of Human Thioredoxin Reductase 1 Le | 1e-41 | ||
| 3qfa_A | 519 | Crystal Structure Of The Human Thioredoxin Reductas | 1e-41 | ||
| 2cfy_A | 521 | Crystal Structure Of Human Thioredoxin Reductase 1 | 1e-41 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 5e-40 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 6e-40 | ||
| 2x8c_A | 598 | Thioredoxin Glutathione Reductase From Schistosoma | 2e-39 | ||
| 3h4k_A | 598 | Crystal Structure Of The Wild Type Thioredoxin Glut | 3e-39 | ||
| 2v6o_A | 596 | Structure Of Schistosoma Mansoni Thioredoxin-Glutat | 3e-39 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 7e-39 | ||
| 1typ_A | 487 | Substrate Interactions Between Trypanothione Reduct | 2e-38 | ||
| 1tyt_A | 487 | Crystal And Molecular Structure Of Crithidia Fascic | 2e-38 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 4e-38 | ||
| 2tpr_A | 490 | X-ray Structure Of Trypanothione Reductase From Cri | 5e-38 | ||
| 1fea_A | 490 | Unliganded Crithidia Fasciculata Trypanothione Redu | 1e-37 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 4e-36 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 4e-36 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 6e-36 | ||
| 4dna_A | 463 | Crystal Structure Of Putative Glutathione Reductase | 3e-35 | ||
| 2nvk_X | 488 | Crystal Structure Of Thioredoxin Reductase From Dro | 1e-34 | ||
| 3dgh_A | 483 | Crystal Structure Of Drosophila Thioredoxin Reducta | 1e-34 | ||
| 3dh9_A | 482 | Crystal Structure Of Drosophila Thioredoxin Reducta | 1e-34 | ||
| 3o0h_A | 484 | Crystal Structure Of Glutathione Reductase From Bar | 1e-34 | ||
| 3dgz_A | 488 | Crystal Structure Of Mouse Mitochondrial Thioredoxi | 2e-33 | ||
| 1zdl_A | 517 | Crystal Structure Of Mouse Thioredoxin Reductase Ty | 2e-33 | ||
| 3l8k_A | 466 | Crystal Structure Of A Dihydrolipoyl Dehydrogenase | 4e-33 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 6e-33 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 7e-33 | ||
| 3ic9_A | 492 | The Structure Of Dihydrolipoamide Dehydrogenase Fro | 1e-32 | ||
| 1xdi_A | 499 | Crystal Structure Of Lpda (Rv3303c) From Mycobacter | 8e-32 | ||
| 4b1b_A | 542 | Crystal Structure Of Plasmodium Falciparum Oxidised | 1e-29 | ||
| 1onf_A | 500 | Crystal Structure Of Plasmodium Falciparum Glutathi | 3e-28 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 2e-17 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 5e-11 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 7e-11 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 3e-10 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 3e-10 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 3e-10 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 3e-10 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 3e-10 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 3e-10 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 3e-10 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 6e-10 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 7e-10 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 4e-09 | ||
| 3cty_A | 319 | Crystal Structure Of T. Acidophilum Thioredoxin Red | 9e-09 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 1e-08 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 2e-08 | ||
| 2q7v_A | 325 | Crystal Structure Of Deinococcus Radiodurans Thiore | 6e-08 | ||
| 4gcm_A | 312 | Crystal Structure Of A Thioredoxine Reductase (Trxb | 7e-08 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 2e-07 | ||
| 3nta_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 5e-07 | ||
| 3oc4_A | 452 | Crystal Structure Of A Pyridine Nucleotide-Disulfid | 5e-07 | ||
| 3nt6_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 6e-07 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 3e-06 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 3e-06 | ||
| 1fl2_A | 310 | Catalytic Core Component Of The Alkylhydroperoxide | 4e-06 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 5e-06 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 5e-06 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 5e-06 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 6e-06 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 7e-06 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 7e-06 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 1e-05 | ||
| 2a87_A | 335 | Crystal Structure Of M. Tuberculosis Thioredoxin Re | 5e-05 | ||
| 1hyu_A | 521 | Crystal Structure Of Intact Ahpf Length = 521 | 2e-04 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 8e-04 |
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495 | Back alignment and structure |
|
| >pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474 | Back alignment and structure |
|
| >pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474 | Back alignment and structure |
|
| >pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468 | Back alignment and structure |
|
| >pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478 | Back alignment and structure |
|
| >pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458 | Back alignment and structure |
|
| >pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From Masc Data Length = 482 | Back alignment and structure |
|
| >pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase Length = 482 | Back alignment and structure |
|
| >pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound To A Triazaspirodimethoxybenzoyl Inhibitor Length = 466 | Back alignment and structure |
|
| >pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Mycobacterium Tuberculosis Length = 464 | Back alignment and structure |
|
| >pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467 | Back alignment and structure |
|
| >pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463 | Back alignment and structure |
|
| >pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478 | Back alignment and structure |
|
| >pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461 | Back alignment and structure |
|
| >pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479 | Back alignment and structure |
|
| >pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477 | Back alignment and structure |
|
| >pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478 | Back alignment and structure |
|
| >pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461 | Back alignment and structure |
|
| >pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499 | Back alignment and structure |
|
| >pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478 | Back alignment and structure |
|
| >pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478 | Back alignment and structure |
|
| >pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499 | Back alignment and structure |
|
| >pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450 | Back alignment and structure |
|
| >pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479 | Back alignment and structure |
|
| >pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513 | Back alignment and structure |
|
| >pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519 | Back alignment and structure |
|
| >pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519 | Back alignment and structure |
|
| >pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598 | Back alignment and structure |
|
| >pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598 | Back alignment and structure |
|
| >pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487 | Back alignment and structure |
|
| >pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490 | Back alignment and structure |
|
| >pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463 | Back alignment and structure |
|
| >pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488 | Back alignment and structure |
|
| >pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483 | Back alignment and structure |
|
| >pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482 | Back alignment and structure |
|
| >pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484 | Back alignment and structure |
|
| >pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488 | Back alignment and structure |
|
| >pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517 | Back alignment and structure |
|
| >pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492 | Back alignment and structure |
|
| >pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499 | Back alignment and structure |
|
| >pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542 | Back alignment and structure |
|
| >pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin Reductase Length = 325 | Back alignment and structure |
|
| >pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574 | Back alignment and structure |
|
| >pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452 | Back alignment and structure |
|
| >pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase Length = 335 | Back alignment and structure |
|
| >pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 507 | |||
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 0.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 0.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 0.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 0.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 0.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 0.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 0.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 0.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 0.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 0.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 0.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 0.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 0.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 0.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 0.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 0.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 0.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 0.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 1e-165 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 1e-162 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 1e-159 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 1e-158 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 1e-155 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 1e-151 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 1e-150 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 1e-150 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 1e-149 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 1e-146 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 1e-144 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 1e-142 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 3e-37 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 5e-37 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 1e-36 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 9e-36 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 9e-36 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 2e-35 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 4e-35 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 9e-35 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 2e-34 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 7e-33 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 7e-26 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 4e-24 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 8e-24 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 1e-23 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 2e-23 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 4e-23 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 2e-22 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 2e-21 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 6e-21 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 5e-20 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 7e-20 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 7e-20 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 1e-19 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 2e-19 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 2e-19 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 5e-19 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 9e-19 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 2e-18 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 2e-16 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 6e-16 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 2e-05 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 4e-15 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 8e-05 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 9e-15 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 6e-13 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 2e-12 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 5e-12 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 4e-04 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 8e-12 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 6e-05 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 3e-10 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 6e-10 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 2e-09 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 2e-08 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 3e-08 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 5e-08 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 6e-08 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 8e-08 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 9e-08 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 2e-07 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 2e-07 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 3e-07 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 3e-07 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 4e-07 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 7e-07 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 2e-06 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 2e-06 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 3e-06 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 3e-06 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 4e-06 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 6e-06 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 6e-06 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 6e-06 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 7e-06 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 8e-06 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 9e-06 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 1e-05 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 2e-05 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 2e-05 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 2e-05 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 2e-05 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 4e-05 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 8e-05 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 1e-04 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 2e-04 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 2e-04 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 2e-04 | |
| 3utf_A | 513 | UDP-galactopyranose mutase; nucleotide binding, fl | 3e-04 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 3e-04 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 4e-04 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 6e-04 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 8e-04 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 8e-04 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 8e-04 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 8e-04 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 9e-04 |
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 846 bits (2189), Expect = 0.0
Identities = 418/470 (88%), Positives = 451/470 (95%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
AS SDENDVV+IGGGPGGYVAAIKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSS
Sbjct: 1 ASGSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSS 60
Query: 98 HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
HMYHEA HSFA+HGVK S+VE+DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF
Sbjct: 61 HMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 120
Query: 158 ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKL 217
+SPSE+SVDTIEG NTVVKGK+IIIATGSDVKSLPG+TIDEK+IVSSTGALAL+E+PKKL
Sbjct: 121 VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPKKL 180
Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277
VVIGAGYIGLEMGSVW R+GSEVTVVEFA++IVP+MD EIRKQFQRSLEKQ MKF LKTK
Sbjct: 181 VVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTK 240
Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
VVGVD SGDGVKLT+EP+AGGE+TI+EADVVLVSAGRTPFT+GL LDKIGVETDK+GRI
Sbjct: 241 VVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRIL 300
Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPE 397
VNERF+TN+ GVYAIGDVIPGPMLAHKAEEDGVACVE+LAGK GHVDYDKVPGVVYT+PE
Sbjct: 301 VNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPE 360
Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
VASVGKTEEQVKE GVEYRVGKFPF+ANSRAKAID+AEG+VKI+AEKETDKILGVHIMAP
Sbjct: 361 VASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAP 420
Query: 458 NAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
NAGELIHEA +A+ YDASSEDIARVCHAHPTMSEA+KEAAMAT+DKPIHI
Sbjct: 421 NAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIHI 470
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 846 bits (2188), Expect = 0.0
Identities = 269/480 (56%), Positives = 345/480 (71%), Gaps = 2/480 (0%)
Query: 30 SFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIP 89
+ + D++VIG GPGGYV AIKAAQLG+K +EKR GGTCLNVGCIP
Sbjct: 12 DLGTENLYFQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIP 71
Query: 90 SKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVT 149
SKALLH+S M+H+A H + GV+ ++ +++L MMA KD V + G+ LFKKNK+
Sbjct: 72 SKALLHASEMFHQAQHGLEALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKID 131
Query: 150 YVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI--DEKRIVSSTGA 207
+G GK + +VSV +G V++ KN++IATGSDV +PG+ + DEK IVSSTGA
Sbjct: 132 GFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVAFDEKTIVSSTGA 191
Query: 208 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267
LAL +VP ++V+G G IGLE+GSVWARLG++VTVVEF I+ MDGE+ KQ QR L K
Sbjct: 192 LALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTK 251
Query: 268 QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327
Q + F L KV G SGDG K+T EP GGE T L+A+VVL++ GR P T GLGL K G
Sbjct: 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAG 311
Query: 328 VETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDK 387
V D GR+ ++ F T+I GVYAIGDV+ GPMLAHKAE++GVA E +AG+ GHV+YD
Sbjct: 312 VVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDV 371
Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
+PGVVYT PEVASVGKTEE++K GV Y++GKFPF AN RA+A+ +G VKILA+KETD
Sbjct: 372 IPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETD 431
Query: 448 KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
++LG HI+ AGE+IHE + + + SSED+ R CHAHPTMSEA+KEAA++T KPIH+
Sbjct: 432 RVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALSTFFKPIHM 491
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 830 bits (2147), Expect = 0.0
Identities = 227/473 (47%), Positives = 312/473 (65%), Gaps = 8/473 (1%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALL 94
S + DV+VIG GPGGYVAAIK+AQLGLKT IEK + ALGGTCLNVGCIPSKALL
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALL 60
Query: 95 HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
SS+ +HEA SF HG+ V +D+P M+A+KD+ V NLT G+ L K N VT +G+
Sbjct: 61 DSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH 120
Query: 155 GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 214
GK ++ +V V +G + V+ +N+I+A+GS +P +D+ IV STGAL VP
Sbjct: 121 GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNVP 180
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274
KL VIGAG IGLE+GSVWARLG+EVTV+E +P++D ++ K+ Q+ L KQ +K +L
Sbjct: 181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILL 240
Query: 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
+V G ++ V + A G + D ++V+ GR P T L GV D+ G
Sbjct: 241 GARVTGTEVKNKQVTVKFVDAEGEKS--QAFDKLIVAVGRRPVTTDLLAADSGVTLDERG 298
Query: 335 RIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT 394
I V++ AT++PGVYAIGDV+ G MLAHKA E+GV E +AG ++YD +P V+YT
Sbjct: 299 FIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYT 358
Query: 395 HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHI 454
HPE+A VGKTE+ +K GV VG FPF A+ RA A +D G VK++A+ +TD++LGVH+
Sbjct: 359 HPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHV 418
Query: 455 MAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
+ P+A EL+ + +A+ + S+ED+ + AHP +SEAL EAA+A IH+
Sbjct: 419 IGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIHV 471
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 827 bits (2140), Expect = 0.0
Identities = 264/477 (55%), Positives = 348/477 (72%), Gaps = 9/477 (1%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
+ + +DVV+IGGGP GYVAAIKAAQLG T C+EKRG LGGTCLNVGCIPSKALL++SH
Sbjct: 1 TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSH 60
Query: 99 MYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
++H+ G+ + +++++ KD AV LT GIE LFKKNKVTY KG G F
Sbjct: 61 LFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF 120
Query: 158 ISPSEVSVDTIEGG------NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN 211
+++ V ++G + ++ KNII+ATGS+V PGI IDE++IVSSTGAL+L
Sbjct: 121 EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKIVSSTGALSLK 180
Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
E+PK+L +IG G IGLEMGSV++RLGS+VTVVEF I SMDGE+ K Q+ L+KQ +
Sbjct: 181 EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLD 240
Query: 272 FMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
F L TKV+ + D V++ +E ++ LEA+V+LV+ GR P+ AGLG +KIG+E
Sbjct: 241 FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLE 300
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVP 389
DK GR+ ++++F + P + +GDV GPMLAHKAEE+G+A VE L HGHV+Y+ +P
Sbjct: 301 VDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIP 360
Query: 390 GVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKI 449
V+Y+HPEVA VGKTEEQ+KE G++Y++GKFPF ANSRAK D EG VKIL + +T++I
Sbjct: 361 SVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERI 420
Query: 450 LGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506
LG HI+ PNAGE+I EA LA+ Y AS+ED+ARVCHAHPT+SEA KEA MA +DK IH
Sbjct: 421 LGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKAIH 477
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 825 bits (2134), Expect = 0.0
Identities = 280/473 (59%), Positives = 348/473 (73%), Gaps = 4/473 (0%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
A + DV VIG GPGGYVAAIKAAQLG KT CIEK LGGTCLNVGCIPSKALL++S
Sbjct: 1 ADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNS 60
Query: 98 HMYHEA-MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 156
H YH A FAS G++ S V ++L MM QK AV LT GI LFK+NKV +V GYGK
Sbjct: 61 HYYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGK 120
Query: 157 FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKK 216
++V+ +GG V+ KNI+IATGS+V PGITIDE IVSSTGAL+L +VP+K
Sbjct: 121 ITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVPEK 180
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFMLK 275
+VVIGAG IG+E+GSVW RLG++VT VEF + +D EI K FQR L+KQ KF L
Sbjct: 181 MVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLN 240
Query: 276 TKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
TKV G DG + +++E A+GG+ ++ DV+LV GR PFT LGL+++G+E D G
Sbjct: 241 TKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRG 300
Query: 335 RIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT 394
RIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG H+DY+ VP V+YT
Sbjct: 301 RIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYT 360
Query: 395 HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHI 454
HPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK D +G+VKIL +K TD++LG HI
Sbjct: 361 HPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHI 420
Query: 455 MAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA-THDKPIH 506
+ P AGE+++EA LA+ Y AS EDIARVCHAHPT+SEA +EA +A + K I+
Sbjct: 421 LGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSIN 473
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 820 bits (2120), Expect = 0.0
Identities = 275/468 (58%), Positives = 345/468 (73%), Gaps = 4/468 (0%)
Query: 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 101
+ DVVVIGGGPGGYVA+IKAAQLG+KT C+EKRGALGGTCLNVGCIPSKALLH++H+YH
Sbjct: 1 NPYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYH 60
Query: 102 EAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
+A +FA +G+ V +D M QK++AV LT G+E LFKKNKVTY KG G F +
Sbjct: 61 DAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETA 120
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
+ V+ ++G +++ K IIATGS+ LP + DEK ++SSTGALAL VPK +VVI
Sbjct: 121 HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALALPRVPKTMVVI 180
Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKFMLKTKVV 279
G G IGLE+GSVWARLG+EVTVVEFA P++D ++ +L K +KMKFM TKVV
Sbjct: 181 GGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVV 240
Query: 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339
G +GD V L +E G++ + + +LVS GR PFT GLGLDKI V ++ G + +
Sbjct: 241 GGTNNGDSVSLEVE-GKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIG 299
Query: 340 ERFATNIPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEV 398
+ F T+IP VYAIGDV+ GPMLAHKAE++GVAC E LAGK GHV+Y +P V+YT PEV
Sbjct: 300 DHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEV 359
Query: 399 ASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458
ASVGK+E+++K+ GV Y+VGKFPF ANSRAKA+ +G VK+L +K TD+ILGVHI+
Sbjct: 360 ASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTT 419
Query: 459 AGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506
AGELI EA LA+ Y ASSED+ R CHAHPTMSEALKEA MA K I+
Sbjct: 420 AGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMALFAKTIN 467
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 810 bits (2096), Expect = 0.0
Identities = 228/463 (49%), Positives = 316/463 (68%), Gaps = 10/463 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D++VIG GPGGYVAAI+AAQLG+K +EK ALGGTCL VGCIPSKALL ++ +EA
Sbjct: 3 DLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAK 62
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
G K VE+DLPA+MA KDK V T+G+E LFKKN + +G +F+S +V
Sbjct: 63 KGL--LGAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVL 120
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
V+ ++ + I+IATGS P +D +R+V+ST AL+ EVPK+L+V+G G
Sbjct: 121 VE---ETGEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVGGGV 177
Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
IGLE+G VW RLG+EV V+E+ I+P+MD E+ + +R +KQ + +V V
Sbjct: 178 IGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPE 237
Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
G ++ LE G + + EAD VLV+ GR P+T GL L+ G+ TD+ GRIPV+E T
Sbjct: 238 AKGARVELE----GGEVL-EADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT 292
Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKT 404
+P +YAIGDV+ GPMLAHKA E+G+A VE + GHVDY +P VVYTHPE+A+VG T
Sbjct: 293 RVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYT 352
Query: 405 EEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464
EE++K G+ Y+VGKFP+ A+ RA+A+ + EG +K+LA +TD+ILGVH + G+++
Sbjct: 353 EEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLA 412
Query: 465 EAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
EA LA+ + AS+ED+ R HAHP++SE LKEAA+A ++PIH+
Sbjct: 413 EAALALFFKASAEDLGRAPHAHPSLSEILKEAALAAWERPIHL 455
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 805 bits (2082), Expect = 0.0
Identities = 198/480 (41%), Positives = 271/480 (56%), Gaps = 13/480 (2%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
SA E DVVV+GGGPGGY AA AA GLK +E+ LGG CLNVGCIPSKALLH++
Sbjct: 1 GSADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNA 60
Query: 98 HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
+ E H A++G+K+ E+D+ + A KD VS LT G+ G+ K KV ++G G+F
Sbjct: 61 AVIDEVRH-LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF 119
Query: 158 ISPSEVSVDTIEGG----------NTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGA 207
+ P + V G +V KN IIA GS V LP I D RI+ S+GA
Sbjct: 120 LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDP-RIIDSSGA 178
Query: 208 LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267
LAL EVP KL++IG G IGLEMG+V++ LGS + VVE ++ D ++ K +Q+ E
Sbjct: 179 LALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEY 238
Query: 268 QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327
+ M+ TK V V+ DGV +T E A ++ D VLV+AGR P + +K G
Sbjct: 239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQ-RYDAVLVAAGRAPNGKLISAEKAG 297
Query: 328 VETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDK 387
V G I V+++ TN+P +YAIGD++ PMLAHKA +G E AG + D
Sbjct: 298 VAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARV 357
Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
+PGV YT PEVA VG+TE K + FP+ A+ RA A + K++ + ET
Sbjct: 358 IPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETG 417
Query: 448 KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
+I+G I+ PN G++I E LAI + DI + H HPT+ E++ AA +
Sbjct: 418 RIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGTCTDL 477
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 788 bits (2037), Expect = 0.0
Identities = 219/470 (46%), Positives = 294/470 (62%), Gaps = 11/470 (2%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
+ D++VIG GPGGY AAI+AAQLGLK +E G +GG CLNVGCIP+KALLH++
Sbjct: 2 TPMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEA-GEVGGVCLNVGCIPTKALLHAAE 60
Query: 99 MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
H G+K + E+DL + +D+ V LT G+ L K N V ++G+ + +
Sbjct: 61 TLHHLKV-AEGFGLK-AKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLV 118
Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE-VPKKL 217
P EV V G K++I+ATGS+ L G E + ST AL + E +PK+L
Sbjct: 119 GPKEVEV-----GGERYGAKSLILATGSEPLELKGFPFGE-DVWDSTRALKVEEGLPKRL 172
Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277
+VIG G +GLE+G V+ RLG+EVT++E+ +I+P D E +R+LEK+ ++ KTK
Sbjct: 173 LVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTK 232
Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337
VG + DG+ + LEPA GGE + D VLV+ GR P T GLGL+K GV+ D+ G I
Sbjct: 233 AVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIR 292
Query: 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPE 397
VN R T++PGVYAIGD P+LAHKA +G+ E AGK DY VP VVYT PE
Sbjct: 293 VNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKDSAFDYQ-VPSVVYTSPE 351
Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP 457
A VG TEE+ K G + +VGKFP A+ RA + AEG+VK++ ++ETD +LGV I+ P
Sbjct: 352 WAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGP 411
Query: 458 NAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
AGELI EA LA+ A+ D+A H HPT+SE+L EAA A H + IHI
Sbjct: 412 QAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAEAFHKQAIHI 461
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 782 bits (2022), Expect = 0.0
Identities = 204/459 (44%), Positives = 281/459 (61%), Gaps = 6/459 (1%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
+ E + +V+G GPGGYVAAI+AAQLG K T +EK G LGG CLNVGCIPSKAL+ +SH Y
Sbjct: 1 AIETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRY 59
Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
+A H G+K +V +D + K V LT G+EGL K NKV VKG F+
Sbjct: 60 EQAKH-SEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA 118
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
+ V V KN IIATGS LP RI+ STGAL L EVPK LVVI
Sbjct: 119 NTVRVVN-GDSAQTYTFKNAIIATGSRPIELPNFKFSN-RILDSTGALNLGEVPKSLVVI 176
Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
G GYIG+E+G+ +A G++VT++E A +I+ + ++ ++ L+K+ ++ + G
Sbjct: 177 GGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKG 236
Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
+ DGV +T E A GE ++AD VLV+ GR P T LGL++IG++ G I V++
Sbjct: 237 AEEREDGVTVTYE--ANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQ 294
Query: 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVAS 400
+ T++P ++AIGD++PGP LAHKA +G E +AG VDY +P VV++ PE AS
Sbjct: 295 QCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECAS 354
Query: 401 VGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAG 460
VG E+Q K+ G++ KFPF AN RA A++D +G +K++ KE I+G I+ PNA
Sbjct: 355 VGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNAS 414
Query: 461 ELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 499
++I E LAI ++EDIA HAHPT+ E EAA
Sbjct: 415 DMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEV 453
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 775 bits (2003), Expect = 0.0
Identities = 178/465 (38%), Positives = 267/465 (57%), Gaps = 15/465 (3%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
+++IGGGPGGYVAAI+A QLG+ T +E + ALGGTCLN+GCIPSKAL+H + +H+A
Sbjct: 7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQAS 65
Query: 105 HS--FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
+ G+ +S +D+ +A KD V LT G+ L KK+ V V G+ K + +
Sbjct: 66 RFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQ 125
Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
V VD ++ +++++ATGS LP + + ++SST ALA +P+ LVV+G
Sbjct: 126 VEVDG-----QRIQCEHLLLATGSSSVELPMLPLGG-PVISSTEALAPKALPQHLVVVGG 179
Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
GYIGLE+G + +LG++V+VVE I+P+ D E+ SL+K + L V G +
Sbjct: 180 GYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
+G L + G + LEAD VLV+ GR P T G L+ + ++ + I ++ER
Sbjct: 240 ---NGCLLAND--GKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNG-AAIAIDERC 293
Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVG 402
T++ V+AIGDV PMLAH+A G E +AGK + + V +T PEV VG
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVG 353
Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
KT EQ + G++ V +FPF AN RA +++ G V+++A ++ ILG + EL
Sbjct: 354 KTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSEL 413
Query: 463 IHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
++ A ED+A HAHPT+ EA++EAA+ +HI
Sbjct: 414 STAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI 458
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 774 bits (2002), Expect = 0.0
Identities = 175/464 (37%), Positives = 252/464 (54%), Gaps = 7/464 (1%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DVVV+G GPGGYVAAI+AAQLGL T +E + GG CLNVGCIPSKALL ++ + H
Sbjct: 5 DVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFT 63
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
+ G+ V D + K G+ L KKNK+T + GYG F + +
Sbjct: 64 KDAKAFGIS-GEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLL 122
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
VD +GG V N IIATGS + +PG ++ +V+ + E+PK +++ GAG
Sbjct: 123 VDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VVTYEEQILSRELPKSIIIAGAGA 181
Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
IG+E G V G +VT+VEF +P+ D ++ K+ ++ +K + + TKV +
Sbjct: 182 IGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADG 241
Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
G V +T+ G L+A+ VL + G P G GLDK GV I V++ T
Sbjct: 242 GSQVTVTVT--KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT 299
Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVG 402
N+ +YAIGDV LAH AE GV E +AG D+ +P + P VAS G
Sbjct: 300 NVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFG 359
Query: 403 KTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462
TE+Q + G + V KFPF AN++A + D G VK++A+ + ++LG H++ + EL
Sbjct: 360 LTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAEL 419
Query: 463 IHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506
+ E LA +D ++ ++AR H HPTMSEAL+E I+
Sbjct: 420 LPELTLAQRWDLTASELARNVHTHPTMSEALQECFHGLVGHMIN 463
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 740 bits (1914), Expect = 0.0
Identities = 119/473 (25%), Positives = 211/473 (44%), Gaps = 18/473 (3%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
S + DVVVIG G GY A + A+ + +G LGG CL GC+PSK +
Sbjct: 2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTA 61
Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVS-NLTRGIEGLFKKNKVTYVKGYGKFIS 159
+ + +D + +KD + + + +T+ KGY K
Sbjct: 62 WRL------TNIANVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKD 115
Query: 160 PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP--GITIDEKRIVSSTGALALNEVPKKL 217
P+ V V T EG + + +IIA+G++ L G+ + ++P+ +
Sbjct: 116 PTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLPQDM 175
Query: 218 VVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-DGEIRKQFQRSLEKQKMKFMLKT 276
V+IGAGYIGLE+ S++ +G + ++E + ++ D +I L K+ +
Sbjct: 176 VIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSIL---KLNIKFNS 232
Query: 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRI 336
V V D + G K + + V+++AGR P G +IG+ K G I
Sbjct: 233 PVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPE-GAREIGLSISKTG-I 290
Query: 337 PVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDY---DKVPGVVY 393
V+E TNIP V+A GD H A +A + VDY +P +Y
Sbjct: 291 VVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIY 350
Query: 394 THPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVH 453
T P ++ VG + +++G+E ++ + A+ EG++K++ E+ + +++G
Sbjct: 351 TIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAW 410
Query: 454 IMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506
++ ++ LI+E LA+ Y +++ +A HP+ +E + A + H
Sbjct: 411 MIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTARKVIEGHHH 463
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 720 bits (1861), Expect = 0.0
Identities = 119/468 (25%), Positives = 212/468 (45%), Gaps = 17/468 (3%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKT---TCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 101
+V++GGGP GY AA+ AA +T T I+ G +GG + C+PSK + S+ +
Sbjct: 4 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRT 62
Query: 102 EAMHS-FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
E + + F ++ LP + A+ + + I V + G G+ I
Sbjct: 63 ELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDS 122
Query: 161 S------EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 214
+ + +G + + +++ATG+ + LP D +RI++ L+ +P
Sbjct: 123 TPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDLDALP 182
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274
L+V+G+G G E + LG VTVV ++P D + + S ++ ++
Sbjct: 183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFK 242
Query: 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334
+ V +G GV +T+ + +E L++ G P T+GLGL+++G++ +
Sbjct: 243 NARAASVTRTGAGVLVTMT-----DGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGN 297
Query: 335 RIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVY 393
+ V+ T G+YA GD LA A G + G+ + V V+
Sbjct: 298 YLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVF 357
Query: 394 THPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVH 453
T PE+A+VG + + V R P N+RAK + G VKI + T ++G
Sbjct: 358 TRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGV 417
Query: 454 IMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501
++AP A ELI +A+ + ++A+ +P++S ++ EAA
Sbjct: 418 VVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM 465
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 713 bits (1844), Expect = 0.0
Identities = 146/468 (31%), Positives = 224/468 (47%), Gaps = 11/468 (2%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
V VIG G AA+KA + G + T IE RG +GGTC+NVGC+PSK ++ ++H+
Sbjct: 2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIE-RGTIGGTCVNVGCVPSKIMIRAAHIA 60
Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRG--IEGLFKKNKVTYVKGYGKFI 158
H S G+ + +D ++AQ+ V L L +T V G +F
Sbjct: 61 HLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFK 120
Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLV 218
++V EGG VV ++ATG+ P + E +ST ALA + +P++L
Sbjct: 121 DDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEALASDTIPERLA 180
Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
VIG+ + LE+ +ARLGS+VTV+ + D I + + + ++ + T+
Sbjct: 181 VIGSSVVALELAQAFARLGSKVTVLA-RNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQA 239
Query: 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338
V LT L AD +LV+ GRTP T L LD GV + G I +
Sbjct: 240 SQVAHMDGEFVLT------TTHGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVI 293
Query: 339 NERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEV 398
++ T+ P +YA GD P + A G + G +D +P VV+T P+V
Sbjct: 294 DQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQV 353
Query: 399 ASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458
A+VG +E + G+E RA A D G +K++ E+ + +++GV +AP
Sbjct: 354 ATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPE 413
Query: 459 AGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506
AGELI A LAI + +++A + TM E LK AA +K +
Sbjct: 414 AGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQT-FNKDVK 460
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 713 bits (1842), Expect = 0.0
Identities = 123/478 (25%), Positives = 212/478 (44%), Gaps = 26/478 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DV +IG G G A A + K IE GA G TC VGC+PSK L+ ++ + A
Sbjct: 10 DVAIIGTGTAGMGAYRAAKKHTDKVVLIEG-GAYGTTCARVGCMPSKLLIAAADASYHAS 68
Query: 105 HSFASHGVKFSSVEVDLPAMMAQ----KDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
G++ + V+ A+M + +D+ V + +E +++K+ +G+ KF+
Sbjct: 69 Q-TDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKI---RGFAKFLDE 124
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVI 220
+ VD ++ V K I+IATGS + R++++ LN++PK + V
Sbjct: 125 HTLQVD----DHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLFELNDLPKSVAVF 180
Query: 221 GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280
G G IGLE+G +RLG V V + + D E+++ +++ ++ F K +V+
Sbjct: 181 GPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVIS 239
Query: 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340
D V++ G+KT VL + GR LGL+ +E DK +E
Sbjct: 240 TIEKEDAVEVIYF-DKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDE 298
Query: 341 -RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK--HGHVDYDKVPGVVYTHPE 397
T++ ++ GD L H+A +DG VV+T P+
Sbjct: 299 LTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQ 358
Query: 398 VASVGKTEEQVKEL-----GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGV 452
VASVG + Q+++L Y VG+ F R++ + +G++ + A++ + + LG
Sbjct: 359 VASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGA 418
Query: 453 HIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDK---PIHI 507
+ P A + H A + + + + HP + E L+ A K H
Sbjct: 419 EMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALRDAQQKLAIEKHD 476
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 696 bits (1798), Expect = 0.0
Identities = 100/488 (20%), Positives = 186/488 (38%), Gaps = 27/488 (5%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
+ E D + IGGG G + +G + +++ LGG+C + C+P +
Sbjct: 39 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAA 98
Query: 99 MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK---VTYVKGYG 155
A + + +V + +A N GI K + +
Sbjct: 99 ELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA 158
Query: 156 KFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV-SSTGALALNEVP 214
K I V V K KN+I+A G+ +L ++ K + +T L+ P
Sbjct: 159 KVIDNHTVEA-----AGKVFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEP 213
Query: 215 -KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
+VV+G +E G + G ++ + D E R +++Q M+ +
Sbjct: 214 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEII 273
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
+ V ++ +G + + +E D V + G P +A L +G++
Sbjct: 274 SGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELA-KILGLDLGPK 332
Query: 334 GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVY 393
G + VNE T++P VYA+GD+I GPM KA + G + G+ P ++
Sbjct: 333 GEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLH 392
Query: 394 THPEVASVGKTEEQVKELGVEYRVGKFPF----------------LANSRAKAIDDAEGI 437
TH EV+ +G EE+ + G E K P + + K G
Sbjct: 393 THYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGF 452
Query: 438 VKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497
KI+ + +T K+LG H + A + + I + +++ + + ++ +
Sbjct: 453 QKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSR 512
Query: 498 MATHDKPI 505
+ K +
Sbjct: 513 LRAGSKNL 520
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 543 bits (1401), Expect = 0.0
Identities = 119/502 (23%), Positives = 220/502 (43%), Gaps = 66/502 (13%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D++VIGGG GG AA +AA+ K +EK LGGTC+NVGC+P K + +++ ++ +
Sbjct: 4 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHD-IL 61
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
+ +G + +LP ++ ++DK + L K+KV +G F+S + +
Sbjct: 62 ENSRHYGFD-TKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRIL 120
Query: 165 VD---------TIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEV 213
+ +++G+NI+IA G+ + GI + +SS + E
Sbjct: 121 IKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGI----ENTISSDEFFNIKE- 175
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
KK+ ++G+GYI +E+ +V RLG + + I+ D + + ++K + +
Sbjct: 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIV 235
Query: 274 LKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
VV + D + + L + D V+ GR+P T L L+K+ VET+
Sbjct: 236 TFADVVEIKKVSDKNLSIHLS----DGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNN 291
Query: 333 MGRIPVNERFATNIPGVYAIGD----------------------------------VIPG 358
I V+E T++ +YA+GD +
Sbjct: 292 -NYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYN 350
Query: 359 PMLAHKAEEDGVACVEFLAG-KHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL----GV 413
L A G + L K +Y +P V+++HP + ++G +EE ++ V
Sbjct: 351 VQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENV 410
Query: 414 EYRVGKFPFL--ANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAIN 471
+ KF L + + + +K++ + + I G+HI+ NA E++ +A+
Sbjct: 411 KIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALK 470
Query: 472 YDASSEDIARVCHAHPTMSEAL 493
+A+ +D HPT +E
Sbjct: 471 MNATKKDFDETIPIHPTAAEEF 492
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 476 bits (1227), Expect = e-165
Identities = 131/473 (27%), Positives = 210/473 (44%), Gaps = 19/473 (4%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIE--------KRGALGGTCLNVGCIP 89
A D++VIGGG GG A +AAQLG K + + LGGTC+NVGCIP
Sbjct: 1 AGGQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIP 60
Query: 90 SKALLHSSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV 148
K + ++ + +G + + V+ + M V +L G + KV
Sbjct: 61 KKLMHQAAL-LGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKV 119
Query: 149 TYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
Y F+ V G T++ ++I+IATG + + + ++S
Sbjct: 120 KYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIF 179
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
L E P K +V+GA Y+ LE +G + TV+ + + D ++ +E
Sbjct: 180 WLKESPGKTLVVGASYVALECAGFLTGIGLDTTVM-MRSIPLRGFDQQMSSLVTEHMESH 238
Query: 269 KMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327
+F+ + +++T E A G++ D VL + GR P T L L+K G
Sbjct: 239 GTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAG 298
Query: 328 VETD-KMGRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAG-KHGHVD 384
+ T+ K +I V+ + AT++P +YAIGDV G P L A + G + L G +D
Sbjct: 299 ISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMD 358
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI---DDAEGIVKIL 441
Y VP V+T E VG +EE+ L + V + + D ++ +K++
Sbjct: 359 YSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMV 418
Query: 442 AEKETD-KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+E +LG+H + PNAGE+ L I AS + + HPT SE +
Sbjct: 419 CMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEV 471
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 472 bits (1216), Expect = e-162
Identities = 139/506 (27%), Positives = 226/506 (44%), Gaps = 27/506 (5%)
Query: 12 YVLSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTC 71
+V + + +S + + L + + D++VIGGG GG A +AA+ G KT
Sbjct: 76 FVRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAV 135
Query: 72 IE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG--VKFSSVEVDL 121
++ LGGTC+NVGCIP K + + A+ G + S + +
Sbjct: 136 LDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGL-LSHALEDAEHFGWSLDRSKISHNW 194
Query: 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNII 181
M+ + +L G + + N+VTY+ G+ ISP EV + + + G II
Sbjct: 195 STMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKII 254
Query: 182 IATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVT 241
+ATG P I + ++S +L P K +VIGA Y+ LE A LG +VT
Sbjct: 255 LATGERP-KYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVT 313
Query: 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML--------KTKVVGVDLSGDGVKLTLE 293
V+ + ++ D ++ ++ +E +KF + KVV + + G+ L
Sbjct: 314 VM-VRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKG 372
Query: 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
G+K E + V+ + GR P + + + +GV+ DK GR+ + T + VYAIG
Sbjct: 373 HYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIG 432
Query: 354 DVIPG-PMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKEL 411
D+ G P L A + G L AG DY V V+T E + G +EE E
Sbjct: 433 DINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEK 492
Query: 412 GVEYRV----GKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAV 467
+ + F L + A D+ + + + + ++LG+H++ PNAGE+
Sbjct: 493 YGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYA 552
Query: 468 LAINYDASSEDIARVCHAHPTMSEAL 493
+AI A+ D R HPT SE
Sbjct: 553 VAIKMGATKADFDRTIGIHPTCSETF 578
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 462 bits (1192), Expect = e-159
Identities = 137/501 (27%), Positives = 237/501 (47%), Gaps = 27/501 (5%)
Query: 15 SRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIE- 73
S + + S+G V + S S + D+++IGGG GG AA +AAQ G K ++
Sbjct: 4 SHHHHHHSSGLVPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF 63
Query: 74 -------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVDLPAMM 125
R LGGTC+NVGCIP K + ++ +A+ ++G K +V+ D M+
Sbjct: 64 VTPTPLGTRWGLGGTCVNVGCIPKKLMHQAAL-LGQALQDSRNYGWKVEETVKHDWDRMI 122
Query: 126 AQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATG 185
+ +L G ++ KV Y YG+FI P + +G + + +IATG
Sbjct: 123 EAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATG 182
Query: 186 SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEF 245
GI D++ +SS +L P K +V+GA Y+ LE A +G +VTV+
Sbjct: 183 ERP-RYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-V 240
Query: 246 AADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG----VKLTLEPAAGGEKT 301
+ ++ D ++ + +E+ +KF+ + + V+ G +++ + E
Sbjct: 241 RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEII 300
Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGRIPVNERFATNIPGVYAIGDVIPG-P 359
E + V+++ GR T +GL+ +GV+ + K G+IPV + TN+P +YAIGD++
Sbjct: 301 EGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKV 360
Query: 360 MLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVE---- 414
L A + G + L AG DY+ VP V+T E + G +EE+ E E
Sbjct: 361 ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIE 420
Query: 415 -YRVGKFPFLANSRAKAIDDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAVLAINY 472
Y +P ++ D+ + KI+ K+ ++++G H++ PNAGE+ A+
Sbjct: 421 VYHSYFWPLEWTIPSR--DNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKC 478
Query: 473 DASSEDIARVCHAHPTMSEAL 493
+ + + HP +E
Sbjct: 479 GLTKKQLDSTIGIHPVCAEVF 499
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 458 bits (1182), Expect = e-158
Identities = 128/474 (27%), Positives = 210/474 (44%), Gaps = 24/474 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIE---------KRGALGGTCLNVGCIPSKALLH 95
D++VIGGG G A +A G + C++ + +GGTC+NVGCIP K +
Sbjct: 11 DLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQ 70
Query: 96 SSHMYHEAMHSFASHGVKFS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
+S EA+H A++G ++ D ++ + ++ + KV Y+ G
Sbjct: 71 ASL-LGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGL 129
Query: 155 GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVP 214
G F+ + G T+ + +IA G P I + ++S +L+ P
Sbjct: 130 GSFVDSHTLLAKLKSGERTI-TAQTFVIAVGGRP-RYPDIPGAVEYGITSDDLFSLDREP 187
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274
K +V+GAGYIGLE LG E TV+ + ++ D ++ + S+E++ + F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRSIVLRGFDQQMAELVAASMEERGIPFLR 246
Query: 275 KTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
KT + V+ DG + + + GE++ D VL + GR L L GV K
Sbjct: 247 KTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK- 305
Query: 334 GRIPVNERFATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGV 391
+IPV+ + ATN+ +YA+GD+I G P L A G L G +DY V
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 392 VYTHPEVASVGKTEEQVKELGVEYRV----GKFPFLANSRAKAIDDAEGIVKILAEKETD 447
V+T E A VG +EE + + G + + +K +AE+ D
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQK-SVRYCYLKAVAERHGD 424
Query: 448 -KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT 500
++ G+H + P AGE+I A+ + + HPT +E A+
Sbjct: 425 QRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLAITK 478
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 449 bits (1158), Expect = e-155
Identities = 128/455 (28%), Positives = 212/455 (46%), Gaps = 20/455 (4%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D + IGGG GG + +AA G K IE + LGGTC+NVGC+P K + H++ +
Sbjct: 6 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIH 64
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
+G + + + ++A + + + E + KN V +KG+ +F+ +
Sbjct: 65 MYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLE 124
Query: 165 VDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
V+ + +I+IATG +PG+ + + S G AL +P+++ V+GA
Sbjct: 125 VN-----GETITADHILIATGGRPSHPDIPGV----EYGIDSDGFFALPALPERVAVVGA 175
Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
GYIG+E+G V LG++ + E +PS D I + + + + V
Sbjct: 176 GYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVV 235
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
+ DG LTLE G D ++ + GR P + L+ GV+T++ G I V++
Sbjct: 236 KNTDG-SLTLELEDG---RSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ 291
Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG--HVDYDKVPGVVYTHPEVAS 400
TNI G+YA+GD L A G E L H+DY +P VV++HP + +
Sbjct: 292 NTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGT 351
Query: 401 VGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458
VG TE Q +E + +V K F A A +K++ +KI+G+H +
Sbjct: 352 VGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFG 411
Query: 459 AGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
E++ +A+ A+ +D HPT +E
Sbjct: 412 MDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF 446
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 438 bits (1129), Expect = e-151
Identities = 132/469 (28%), Positives = 226/469 (48%), Gaps = 22/469 (4%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
A A D +VIGGG GG +A +AA+LG + +E LGGTC+NVGC+P K + +++
Sbjct: 15 AGAVASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-LGGTCVNVGCVPKKVMWNTA 73
Query: 98 HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
+ E MH A +G + + + ++D VS L + K+ + ++G+ F
Sbjct: 74 V-HSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAF 132
Query: 158 ISPSEVSVDTIEGGNTVVKGKNIIIATGS-----DVKSLPGITIDEKRIVSSTGALALNE 212
S + TIE +I+IATG +PG ++S G L E
Sbjct: 133 TSDPKP---TIEVSGKKYTAPHILIATGGMPSTPHESQIPGA----SLGITSDGFFQLEE 185
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
+P + V++GAGYI +EM + + LGS+ +++ ++ S D I LE ++
Sbjct: 186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEV 245
Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEK----TILEADVVLVSAGRTPFTAGLGLDKIGV 328
+ ++V V + G+++++ A G I + D +L + GR P T L L+K+G+
Sbjct: 246 LKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGI 305
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE--FLAGKHGHVDYD 386
+TD G I V+E TN+ G+YA+GDV +L A G F + +DY+
Sbjct: 306 QTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYN 365
Query: 387 KVPGVVYTHPEVASVGKTEEQVKELGVEY--RVGKFPFLANSRAKAIDDAEGIVKILAEK 444
+P VV++HP + +VG TE++ + F A + ++K++
Sbjct: 366 NIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCAN 425
Query: 445 ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+ +K++G+H+ E++ +A+ A+ D HPT SE L
Sbjct: 426 KEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEEL 474
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 438 bits (1128), Expect = e-150
Identities = 130/467 (27%), Positives = 221/467 (47%), Gaps = 16/467 (3%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
++ + D +VIGGG GG +A +AA G KT +E + LGGTC+NVGC+P K + ++S
Sbjct: 6 STNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYAS 64
Query: 98 HMYHEAMHS-----FASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
+ H+ + + + + + P ++D V L + +K KV V
Sbjct: 65 DLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVF 124
Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
G+ +F V V + V +I++ATG I E S G L E
Sbjct: 125 GWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGT-DSDGFFRLEE 183
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
PKK+VV+GAGYIG+E+ V+ LGSE +V ++ D I+ K+ +
Sbjct: 184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVKEGINV 243
Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
+K+V V+ + + KL + I + D ++ + GR G+G + +G++ +
Sbjct: 244 HKLSKIVKVEKNVETDKLKIHMNDSKS--IDDVDELIWTIGRKSHL-GMGSENVGIKLNS 300
Query: 333 MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG----KHGHVDYDKV 388
+I +E TN+P +Y++GDV+ L A G L G ++ +DY+ V
Sbjct: 301 HDQIIADEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENV 360
Query: 389 PGVVYTHPEVASVGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKET 446
P V+++HPE S+G +E++ E +V F A A + + KI+
Sbjct: 361 PSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPN 420
Query: 447 DKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+K++G+HI+ ++ E++ +AI A+ D HPT +E L
Sbjct: 421 EKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEEL 467
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 436 bits (1123), Expect = e-150
Identities = 111/450 (24%), Positives = 210/450 (46%), Gaps = 12/450 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D+ VIG G GG AA A LG + E+ +GGTC+ GC+P K ++S Y +
Sbjct: 28 DLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-IGGTCVIRGCVPKKLYFYASQ-YAQEF 85
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
G K++ + ++A K+K +S L + + V + F+ +
Sbjct: 86 SKSIGFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLE 145
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
+ + + I+IATG+ + S I ++S L ++PK +V++G GY
Sbjct: 146 L---SVTGERISAEKILIATGAKIVSNSAIK-GSDLCLTSNEIFDLEKLPKSIVIVGGGY 201
Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
IG+E +++ LG + T++ I+ + D ++R+ ++ + + + + V V +
Sbjct: 202 IGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQST 261
Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
+ + L + AD V+++ GR P T GLGL++ GV+ ++ G + V+E+ T
Sbjct: 262 ENCYNVVLT-----NGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTT 316
Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGK 403
N+ ++A+GDV L A D + V+ DYD + V++ PE+ +VG
Sbjct: 317 NVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGL 376
Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
+EE + + F + + +K++ + E+ ++G H++ NAGE+
Sbjct: 377 SEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIA 436
Query: 464 HEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+++ + + + HPTMSE L
Sbjct: 437 QLIGISLKGKLTKDIFDKTMAVHPTMSEEL 466
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 433 bits (1116), Expect = e-149
Identities = 114/450 (25%), Positives = 206/450 (45%), Gaps = 11/450 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D+ VIGGG GG + AA LG K E+ GGTC+ GC+P K +++S + E
Sbjct: 7 DLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-YGGTCVIRGCVPKKLYVYASQ-FAEHF 64
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
A G D ++A K++ ++ L + + P+ V
Sbjct: 65 EDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVK 124
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
+ V + I+IA G + E ++S A L +P+ +++ G GY
Sbjct: 125 L---LASGKTVTAERIVIAVGGHPSPHDALPGHE-LCITSNEAFDLPALPESILIAGGGY 180
Query: 225 IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS 284
I +E +++ LG + T++ +I+ D ++R+ ++E++ ++ + + + V
Sbjct: 181 IAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSAD 240
Query: 285 GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344
DG ++ + + AD V+++ GR P T GLGL+ GV T+++G I V+ T
Sbjct: 241 ADGRRVATT----MKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRT 296
Query: 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGHVDYDKVPGVVYTHPEVASVGK 403
+ PG+YA+GDV L A + + +E D+D + V++ PE+ +VG
Sbjct: 297 STPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGI 356
Query: 404 TEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELI 463
TEE+ E V + F + + I+K++ K++G HI+ +AGE+
Sbjct: 357 TEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMA 416
Query: 464 HEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+++ + +D R HPT +E L
Sbjct: 417 QLLGISLRAGCTKDDFDRTMAVHPTAAEEL 446
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 426 bits (1099), Expect = e-146
Identities = 137/470 (29%), Positives = 215/470 (45%), Gaps = 28/470 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAAQL-GLKTTCIE--------KRGALGGTCLNVGCIPSKALLH 95
D+VVIG G GG A AA L + I+ ALGGTC+NVGC+P K ++
Sbjct: 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVT 64
Query: 96 SSHMYHEAMHSFASHG--VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVK 152
++ Y + + A G + SV + A++A K+KAVS + EG+F + +T+ +
Sbjct: 65 GAN-YMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQ 123
Query: 153 GYGKFISPSEVSVDTIEGGNT----VVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
G+G V V N+ + + I++ATGS GI D+ I +S A
Sbjct: 124 GFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGS-WPQHLGIEGDDLCI-TSNEAF 181
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQRSL 265
L+E PK+ + +G GYI +E ++ G +V + I+ D E+RKQ L
Sbjct: 182 YLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQL 241
Query: 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDK 325
+ V + DG + +G E + DVV+++ GR P + L L+K
Sbjct: 242 RANGINVRTHENPAKVTKNADG-TRHVVFESGAE---ADYDVVMLAIGRVPRSQTLQLEK 297
Query: 326 IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGHVD 384
GVE K G I V+ TN+ +YAIGDV ML A +G A V+ + A K D
Sbjct: 298 AGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATD 357
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAE 443
+ KV V++ P + G EE + + V + F + + V+I+
Sbjct: 358 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTN 417
Query: 444 KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
++LGVH++ ++ E+I + + A D HPT +E L
Sbjct: 418 HADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEEL 467
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 422 bits (1088), Expect = e-144
Identities = 131/472 (27%), Positives = 223/472 (47%), Gaps = 32/472 (6%)
Query: 45 DVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKR--------GALGGTCLNVGCIPSKALLH 95
D+VVIG G GG A AA L G + ++ + ALGGTC+NVGC+P K ++
Sbjct: 9 DLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVT 68
Query: 96 SSHMYHEAMHSFASHGVKF--SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK-VTYVK 152
+ Y + + A G +F SSV+ + ++A K++AV ++ + EG+F + + +
Sbjct: 69 GAQ-YMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFL 127
Query: 153 GYGKFISPSEVSVDTIE----GGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTG 206
G+G S + V V ++ +I++ATGS + ++PGI + +SS
Sbjct: 128 GWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGI----EHCISSNE 183
Query: 207 ALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQR 263
A L E P++++ +G G+I +E ++ G +VT+ I+ D IR++ +
Sbjct: 184 AFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTK 243
Query: 264 SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL 323
L ++ M V L+ DG + +G L+ DVV+++ GR P T L L
Sbjct: 244 QLTANGIEIMTNENPAKVSLNTDG-SKHVTFESG---KTLDVDVVMMAIGRIPRTNDLQL 299
Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFL-AGKHGH 382
+GV+ G + V+E TN+P +YAIGD+ ML A +G A V+ + K
Sbjct: 300 GNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRK 359
Query: 383 VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG-IVKIL 441
D+ +V V++ P + + G EE + + V F + + + KI+
Sbjct: 360 TDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIV 419
Query: 442 AEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+LGVH++ A E+I + + +A D HPT +E L
Sbjct: 420 TNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEEL 471
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 417 bits (1074), Expect = e-142
Identities = 134/454 (29%), Positives = 219/454 (48%), Gaps = 20/454 (4%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D++ IGGG GG A KAA G + IE + LGGTC+NVGC+P K + ++SH EA+
Sbjct: 6 DLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASH-LAEAV 63
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
GV+ S +D P ++A +D+ + + +G ++ +T V G+ +F+ +
Sbjct: 64 RDAPGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIE 123
Query: 165 VDTIEGGNTVVKGKNIIIATGS--DVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
V+ + +I+IATG V LPG + ++S G AL + PK++ +IGA
Sbjct: 124 VE-----GQRLSADHIVIATGGRPIVPRLPGA----ELGITSDGFFALQQQPKRVAIIGA 174
Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282
GYIG+E+ + GSEVTVV ++ D + ++ Q ++ L+ V ++
Sbjct: 175 GYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALE 234
Query: 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF 342
G L + + D V+ + GR P T LGL+ G+E G +P +
Sbjct: 235 RDAQGTTLVAQ----DGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQ 290
Query: 343 ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG--KHGHVDYDKVPGVVYTHPEVAS 400
TN+PGVYA+GD+ L A G E L +DYD +P VV+ HP ++
Sbjct: 291 NTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSK 350
Query: 401 VGKTEEQ-VKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNA 459
VG +E + + LG V + F A + +K++ +++GVH++ A
Sbjct: 351 VGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGA 410
Query: 460 GELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
E++ +A+ A+ D HP +E L
Sbjct: 411 DEMLQGFAVAVKMGATKADFDNTVAIHPGSAEEL 444
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 3e-37
Identities = 59/325 (18%), Positives = 112/325 (34%), Gaps = 40/325 (12%)
Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
I+ TGS P ID R+ A L E K + +IG+GYIG E+ ++
Sbjct: 110 IMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYS 169
Query: 235 RLGSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
V +++ ++ D E + E + +L +KV + D +
Sbjct: 170 NQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL 229
Query: 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
+ +++D+ ++ G P T L K V G I +E ++ ++A G
Sbjct: 230 -----DGKEIKSDIAILCIGFRPNTE---LLKGKVAMLDNGAIITDEYMHSSNRDIFAAG 281
Query: 354 DVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------HPE 397
D + LA A G L K G +
Sbjct: 282 DSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDK-----VKDMGTQSSSGLKLYGRT 336
Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIMA 456
S G K ++ N R + + + + + ++ + +T ILG + +
Sbjct: 337 YVSTGINTALAKANNLKVSEVIIA--DNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSS 394
Query: 457 P-NAGELIHEAVLAINYDASSEDIA 480
+ + + + I + +D+A
Sbjct: 395 MHDVSQSANVLSVCIQNKNTIDDLA 419
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 5e-37
Identities = 76/333 (22%), Positives = 139/333 (41%), Gaps = 50/333 (15%)
Query: 181 IIATGSD--------VKSLPGI----TI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGL 227
I++ G+ ++ + + D RI A + P+ VIG G+IG+
Sbjct: 145 ILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIK----AYIDEKKPRHATVIGGGFIGV 200
Query: 228 EMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG 287
EM G EVT+VE A ++P +D E+ ++ ++ + + V ++ +G
Sbjct: 201 EMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV 260
Query: 288 VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP 347
V+L ++++ D+++++ G P ++ L G+ G I VNE+F T+ P
Sbjct: 261 VRLK-------SGSVIQTDMLILAIGVQPESS-L-AKGAGLALGVRGTIKVNEKFQTSDP 311
Query: 348 GVYAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT--- 394
+YAIGD I + LA A G + + G G + T
Sbjct: 312 HIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGH----TDSLYKGTLGTSVA 367
Query: 395 ---HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKIL 450
VA+ G E+ +K L + Y V ANS A +A + +K++ K++ KI
Sbjct: 368 KVFDLTVATTGLNEKILKRLNIPYEVVHVQ--ANSHAGYYPNATPVLIKLIFNKDSGKIY 425
Query: 451 GVHIMAP-NAGELIHEAVLAINYDASSEDIARV 482
G + + + AI + + D+ +
Sbjct: 426 GAQTLGRDGVDKRMDVIATAIKANLTVLDLPDL 458
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 1e-36
Identities = 70/328 (21%), Positives = 126/328 (38%), Gaps = 41/328 (12%)
Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV-----PKKLVVIGAGYIGLEMGSV 232
+IATG D + + A + + + + +IG G IGLEM
Sbjct: 145 LIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAET 204
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
+ LG +V ++E I DG++ + + +K ++ + V + +
Sbjct: 205 FVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVET 264
Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352
+ G +AD+VLVS G P T L+ + T+ G I VN TN+ VYA
Sbjct: 265 D---KGT---YKADLVLVSVGVKPNTD-F-LEGTNIRTNHKGAIEVNAYMQTNVQDVYAA 316
Query: 353 GDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------HP 396
GD + + A + G + K G + T +
Sbjct: 317 GDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKR-----RAFKGTLGTGIIKFMNL 371
Query: 397 EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIM 455
+A G E++ K L + Y+ K + + A +A+ + +K+L +T ++LG ++
Sbjct: 372 TLARTGLNEKEAKGLHIPYKTVKVD--STNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVI 429
Query: 456 AP-NAGELIHEAVLAINYDASSEDIARV 482
+ I +A+ S D+ V
Sbjct: 430 GEEGVDKRIDVIAMALFNKMSIHDLEDV 457
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 9e-36
Identities = 66/342 (19%), Positives = 123/342 (35%), Gaps = 49/342 (14%)
Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV-----PKKLVVIGAGYIGLEMGSV 232
+++ G+ P +D S + + + V+G G+IGLEM
Sbjct: 110 LLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMES 169
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
LG + T++E A ++ +D E+ +++ Q + L T + V +
Sbjct: 170 LHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASD 229
Query: 293 EPAAGGE--------------KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV 338
+LE D+++++ G P T L G+ ++G I V
Sbjct: 230 AAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQ-L-ARDAGLAIGELGGIKV 287
Query: 339 NERFATNIPGVYAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKV 388
N T+ P +YA+GD + + LA A G + + G+ ++
Sbjct: 288 NAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-----ERY 342
Query: 389 PGVVYT------HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKIL 441
G T V + GK E+Q+K+ G+ + S A AE + K+L
Sbjct: 343 QGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVH--TASHASYYPGAEVVSFKLL 400
Query: 442 AEKETDKILGVHIMAP-NAGELIHEAVLAINYDASSEDIARV 482
+ I G + + I +A + E + +
Sbjct: 401 FDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQHL 442
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 9e-36
Identities = 78/332 (23%), Positives = 128/332 (38%), Gaps = 44/332 (13%)
Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV-----PKKLVVIGAGYIGLEMG-S 231
++A GS P +D + T A + K V++G G+IGLEM S
Sbjct: 118 VLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVS 177
Query: 232 VWARLGSEVTVVEFAADIVPSM-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290
+ G + TVVE A I+P + + + LEK + KVV ++ V
Sbjct: 178 LADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVAR 237
Query: 291 TLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350
+ +K L+AD+V+++AG +P T L G+E D G I V+ R T+ P ++
Sbjct: 238 VIT-----DKRTLDADLVILAAGVSPNTQ-L-ARDAGLELDPRGAIIVDTRMRTSDPDIF 290
Query: 351 AIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------ 394
A GD + PG L A G LA PG V +
Sbjct: 291 AGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGD-----ATFPGAVGSWAVKLF 345
Query: 395 HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVH 453
+ G T E G + RA + + ++++ ++ T ++LG+
Sbjct: 346 EGSASGAGLTVEGALREGYDAVNVHVE--QFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQ 403
Query: 454 IMAPNAGEL---IHEAVLAINYDASSEDIARV 482
+ L I+ + + EDI+
Sbjct: 404 GFSTLGDALTARINAVATMLASKPTVEDISNA 435
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-35
Identities = 59/328 (17%), Positives = 127/328 (38%), Gaps = 48/328 (14%)
Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV-----PKKLVVIGAGYIGLEMGSV 232
I++ G+ G + + A+++ K++V+GAGY+ LE+
Sbjct: 110 ILSPGASAN-SLGF--ESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 166
Query: 233 WARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292
G T++ + I MD ++ + L+K+++ + L ++ ++ G+ +
Sbjct: 167 LYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAIN--GNEITFK- 223
Query: 293 EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352
+ D+++ G P + ++ ++ D+ G IPVN++F TN+P +YAI
Sbjct: 224 ------SGKVEHYDMIIEGVGTHPNSK-F-IESSNIKLDRKGFIPVNDKFETNVPNIYAI 275
Query: 353 GDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------HP 396
GD+ P + LA A E +AG D + G +
Sbjct: 276 GDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN----DTIEFKGFLGNNIVKFFDY 331
Query: 397 EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIM 455
ASVG ++K+ + + A + +++ + +IL +
Sbjct: 332 TFASVGVKPNELKQFDYKMVE----VTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAV 387
Query: 456 AP-NAGELIHEAVLAINYDASSEDIARV 482
A + I +A+ + +++
Sbjct: 388 GKEGADKRIDVLSMAMMNQLTVDELTEF 415
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 4e-35
Identities = 79/331 (23%), Positives = 128/331 (38%), Gaps = 47/331 (14%)
Query: 181 IIATGSD--VKSLPGITIDEKRIVSSTG--------ALALNEVPKKLVVIGAGYIGLEMG 230
II+ G+ +PG D I G ++ +VVIG+GYIG+E
Sbjct: 108 IISPGAVPFELDIPGK--DLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAA 165
Query: 231 SVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK 289
+A+ G +VTV++ + +D E +E + V + GDG +
Sbjct: 166 EAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDG-R 222
Query: 290 LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349
+ +AD+V+V+ G P TA K +E G I +E T+ P V
Sbjct: 223 VQKVVTDKNA---YDADLVVVAVGVRPNTA---WLKGTLELHPNGLIKTDEYMRTSEPDV 276
Query: 350 YAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT----- 394
+A+GD + LA A + G V+ L PGV +
Sbjct: 277 FAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV-----KPFPGVQGSSGLAV 331
Query: 395 -HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGV 452
+ AS G E ++LG E + + D + K++ + ET +ILG
Sbjct: 332 FDYKFASTGINEVMAQKLGKETKAVTVV--EDYLMDFNPDKQKAWFKLVYDPETTQILGA 389
Query: 453 HIMAP-NAGELIHEAVLAINYDASSEDIARV 482
+M+ + I+ LAI + ED+A
Sbjct: 390 QLMSKADLTANINAISLAIQAKMTIEDLAYA 420
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 9e-35
Identities = 71/327 (21%), Positives = 127/327 (38%), Gaps = 43/327 (13%)
Query: 181 IIATGSDVKSLPGITIDEKRIVSSTG---ALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
I+ATG+ S ++++ ALA + + + VIGAG IG+E
Sbjct: 108 ILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLV 167
Query: 235 RLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
++ V V E +++P D E+ + Q+SLEKQ + F + V+G++ + +G+ L
Sbjct: 168 KMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLET- 226
Query: 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
+ + D + + P A ++ + I V+ T++P V+AIG
Sbjct: 227 -----SEQEISCDSGIFALNLHPQLA---YLDKKIQRNLDQTIAVDAYLQTSVPNVFAIG 278
Query: 354 DVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT------HPE 397
D I L + A G+ L K + G + T
Sbjct: 279 DCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKT-----HRFIGSLRTMGTKVGDYY 333
Query: 398 VASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIMA 456
+AS G TE + A + I K++ +K T ++LG + +
Sbjct: 334 LASTGLTETEGLFFPQTLASIIV----RQPAPPLQHGTEILGKLIYDKVTQRVLGAQLCS 389
Query: 457 P-NAGELIHEAVLAINYDASSEDIARV 482
N E I+ L+I + D+ +
Sbjct: 390 KNNCLEKINTLALSIQTGQTLTDLLQK 416
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-34
Identities = 73/330 (22%), Positives = 136/330 (41%), Gaps = 46/330 (13%)
Query: 181 IIATGSD--VKSLPGITIDEKRIVSSTG--------ALALNEVPKKLVVIGAGYIGLEMG 230
+ A G+ V ++ G+ + K + ++ + +V+IG GYIG+EM
Sbjct: 107 VFANGASPQVPAIEGV--NLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMA 164
Query: 231 SVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK 289
+A G VT++ ++ S D E+ + L+K + L+ + ++ K
Sbjct: 165 EAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEERVEK 223
Query: 290 LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349
+ + GE +A++V+++ G P L ++GV + G I NE+ T++ V
Sbjct: 224 VVTD---AGE---YKAELVILATGIKPNIE-L-AKQLGVRIGETGAIWTNEKMQTSVENV 275
Query: 350 YAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYT----- 394
YA GDV + LA + G +AGK PGV+ T
Sbjct: 276 YAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKE-----LHFPGVLGTAVTKF 330
Query: 395 -HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGV 452
E+ G TE + + G + R A++R I +K + + ET+++LGV
Sbjct: 331 MDVEIGKTGLTEMEALKEGYDVRTAFIK--ASTRPHYYPGGREIWLKGVVDNETNRLLGV 388
Query: 453 HIMAPNAGELIHEAVLAINYDASSEDIARV 482
++ + I A + +++D
Sbjct: 389 QVVGSDILPRIDTAAAMLMAGFTTKDAFFT 418
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 7e-33
Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 36/289 (12%)
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF 272
K++ V+GAGYIG+E+ + R G EV +++ + D ++ +++E+ ++
Sbjct: 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQL 253
Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
V V G+G K+ E + D+V+++ G P T L ++ +
Sbjct: 254 AFGETVKEVA--GNG-KVEKIITDKNE---YDVDMVILAVGFRPNTT---LGNGKIDLFR 304
Query: 333 MGRIPVNERFATNIPGVYAIGDVI---------PGPM-LAHKAEEDGVACVEFLAGKHGH 382
G VN+R T+IPGVYAIGD + LA A G+ G
Sbjct: 305 NGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTD-- 362
Query: 383 VDYDKVPGVVYT------HPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI-DDAE 435
+ GV + + S G T E+ K LG + V ++ N + + I
Sbjct: 363 ---LEGIGVQGSNGISIYGLHMVSTGLTLEKAKRLGFDAAVTEYT--DNQKPEFIEHGNF 417
Query: 436 GI-VKILAEKETDKILGVHIMAP-NAGELIHEAVLAINYDASSEDIARV 482
+ +KI+ +K++ +ILG + A + IH LAI + E +A
Sbjct: 418 PVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLAIQEGVTIEKLALT 466
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 74/325 (22%), Positives = 120/325 (36%), Gaps = 67/325 (20%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DVV++G G G+ AA+ AA+ G ++K GG + E
Sbjct: 18 DVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VAGGLTAEAPLV-------------ENY 63
Query: 105 HSFAS-HGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
F S G + + + +V +K
Sbjct: 64 LGFKSIVGSELAK------LFADHAANY------AKI--REGVEVRSIKKTQGGF----- 104
Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VS--ST--GALALNEV 213
IE + K +II TG+ K L G E S ST G L
Sbjct: 105 ---DIETNDDTYHAKYVIITTGTTHKHLGVKG----ESEYFGKGTSYCSTCDGYLFKG-- 155
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIR--KQFQRSLEKQKMK 271
K++V IG G G + VT++E+ + + + ++K+ +
Sbjct: 156 -KRVVTIGGGNSGAIAAISMSEYVKNVTIIEY--------MPKYMCENAYVQEIKKRNIP 206
Query: 272 FMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330
+++ +V + G V + + GE+ ++E D V + G P T+ L GV+
Sbjct: 207 YIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLK--DSGVKL 264
Query: 331 DKMGRIPVNERFATNIPGVYAIGDV 355
D+ G I V+ R T++PGVYA GDV
Sbjct: 265 DERGYIVVDSRQRTSVPGVYAAGDV 289
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 74/328 (22%), Positives = 129/328 (39%), Gaps = 57/328 (17%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
+ D DV+++G GP G AA+ +A+ G++T + +R GG L+ I
Sbjct: 208 NKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER--FGGQVLDTVDI---------- 255
Query: 99 MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
E S + + + VS+ + +K+ G
Sbjct: 256 ---ENYISVP---------KTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLH 303
Query: 159 SPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VS--ST--GAL 208
++ V+K ++IIIATG+ +++ PG E + V+ G L
Sbjct: 304 ---QIETA----SGAVLKARSIIIATGAKWRNMNVPG----EDQYRTKGVTYCPHCDGPL 352
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
K++ VIG G G+E A + VT++EFA P M + Q + +
Sbjct: 353 FKG---KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA----PEMKADQVLQ-DKVRSLK 404
Query: 269 KMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327
+ +L + V G V L G+ + + V G P T L +
Sbjct: 405 NVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWL---EGA 461
Query: 328 VETDKMGRIPVNERFATNIPGVYAIGDV 355
+E ++MG I ++ + T++ GV+A GD
Sbjct: 462 LERNRMGEIIIDAKCETSVKGVFAAGDC 489
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 8e-24
Identities = 51/263 (19%), Positives = 99/263 (37%), Gaps = 51/263 (19%)
Query: 181 IIATGSDV-------KSLPGI----TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEM 229
++A G++ + + +++ A ++++++GAG IG E
Sbjct: 106 VLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGK-----RRVLLLGAGLIGCEF 160
Query: 230 GSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV 288
+ + G ++ VV ++P + K Q LE ++F L + + +G+G+
Sbjct: 161 ANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGL 220
Query: 289 KLTLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFA 343
+ L + G ++ D+V+ + G P T AGL +++ G I V+
Sbjct: 221 EAHL---SDG--EVIPCDLVVSAVGLRPRTELAFAAGLAVNR-G--------IVVDRSLR 266
Query: 344 TNIPGVYAIGDV--IPGPMLAHKA--EEDGVACVEFLAGKHGHVDYD------KVPGVVY 393
T+ +YA+GD + G L + A + LAG V Y K P
Sbjct: 267 TSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPAC-- 324
Query: 394 THPEVASVGKTEEQVKELGVEYR 416
+ + VE
Sbjct: 325 ---PLVVSPPPRGMDGQWLVEGS 344
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 73/325 (22%), Positives = 126/325 (38%), Gaps = 63/325 (19%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DV+++G GP G AAI +A+ G++T + +R GG L+ I E
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTVDI-------------ENY 47
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
S + + + V + +K+ G ++
Sbjct: 48 ISVP---------KTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGG---LHQIE 95
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VS--ST--GALALNEVP 214
V+K ++II+ATG+ +++ PG E + V+ G L
Sbjct: 96 TA----SGAVLKARSIIVATGAKWRNMNVPG----EDQYRTKGVTYCPHCDGPLFKG--- 144
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIR--KQFQ-RSLEKQKMK 271
K++ VIG G G+E A + VT++EF E++ + Q + + +
Sbjct: 145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF--------APEMKADQVLQDKLRSLKNVD 196
Query: 272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330
+L + V G V L G+ +E + V G P T L + VE
Sbjct: 197 IILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL---EGAVER 253
Query: 331 DKMGRIPVNERFATNIPGVYAIGDV 355
++MG I ++ + TN+ GV+A GD
Sbjct: 254 NRMGEIIIDAKCETNVKGVFAAGDC 278
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 69/337 (20%), Positives = 117/337 (34%), Gaps = 71/337 (21%)
Query: 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 99
A+D DV+++G GP G A GL ++ GG + +
Sbjct: 2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQL--------------TAL 47
Query: 100 YHEAMHSFASHGVKFSSVEVDLPAMMAQKDKA-VSNLTRGIEGLFK-----KNKVTYV-K 152
Y E + D+ K V L + F + + +
Sbjct: 48 YPEKY------------IY-DVAGFPKVYAKDLVKGLVEQVA-PFNPVYSLGERAETLER 93
Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK-----SLPGITIDEKR----IVS 203
F V T +G K +IIA G PG E R V
Sbjct: 94 EGDLFK------VTTSQG--NAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVK 145
Query: 204 STGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRK 259
S K+++++G G ++ +T++ +F A K
Sbjct: 146 SKAEFQ----GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAH------EASVK 195
Query: 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319
+ ++ E+ +++ + ++ V+ + E+ LE D VL+ AG +
Sbjct: 196 ELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAG---YIT 252
Query: 320 GLG-LDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
LG L G+ +K +I V+ AT+IPGVYA GD+
Sbjct: 253 KLGPLANWGLALEK-NKIKVDTTMATSIPGVYACGDI 288
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 4e-23
Identities = 58/264 (21%), Positives = 102/264 (38%), Gaps = 60/264 (22%)
Query: 181 IIATGSD--VKSLPGI-------TI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMG 230
++ATG+ + G TI D RI E + ++IG G+IGLE+
Sbjct: 106 VLATGARAREPQIKGKEYLLTLRTIFDADRI------KESIENSGEAIIIGGGFIGLELA 159
Query: 231 SVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290
A G V ++ A + +D E+ + LE+ +KF L ++++ + +GV
Sbjct: 160 GNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEAN--EEGVL- 215
Query: 291 TLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATN 345
+E V + + G P +G+ + G I +++ F T+
Sbjct: 216 -----TNSGF--IEGKVKICAIGIVPNVDLARRSGIHTGR-G--------ILIDDNFRTS 259
Query: 346 IPGVYAIGDVI--PGPM--LAHKAEEDGVACVEFLAGKHGHVDYD--------KVPGVVY 393
VYAIGD G + A A E + L G Y+ K +
Sbjct: 260 AKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG--EPRRYNFKFRSTVFKFGKL-- 315
Query: 394 THPEVASVGKTEEQVKELGVEYRV 417
++A +G T+ + K + +V
Sbjct: 316 ---QIAIIGNTKGEGKWIEDNTKV 336
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 2e-22
Identities = 74/393 (18%), Positives = 119/393 (30%), Gaps = 79/393 (20%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---CIP----- 89
A ++IGGG + AA I R + V +P
Sbjct: 6 DKAPSHVPFLLIGGGTAAFAAARS----------IRARDPGARVLI-VSEDPELPYMRPP 54
Query: 90 -SKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV 148
SK L S F K S+ P+ G+ + KV
Sbjct: 55 LSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVA-VLTGKKV 113
Query: 149 TYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTG-- 206
+ + V + G+ + K +IATG +SL I + S T
Sbjct: 114 VQ-------LDVRDNMV-KLNDGSQITYEK-CLIATGGTPRSLSAIDRAGAEVKSRTTLF 164
Query: 207 -----ALALNEV---PKKLVVIGAGYIGLEMGSVWAR----LGSEVTVVEFA----ADIV 250
+L ++ K + +IG G++G E+ R LG+EV + I+
Sbjct: 165 RKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKIL 224
Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310
P + + ++ +K M V V +S + + L G K +E D ++
Sbjct: 225 PE---YLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKL---KDGRK--VETDHIVA 276
Query: 311 SAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV--IPGPMLAH 363
+ G P GL +D G VN ++ GD L
Sbjct: 277 AVGLEPNVELAKTGGLEID------SDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGR 329
Query: 364 K-------AEEDGVACVEFLAGKHGHVDYDKVP 389
+ A G E + G Y
Sbjct: 330 RRVEHHDHAVVSGRLAGENMTGA--AKPYWHQS 360
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 69/345 (20%), Positives = 128/345 (37%), Gaps = 69/345 (20%)
Query: 32 SLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC--------- 82
+ D D+ +IGGGP G AA + + IE LGG
Sbjct: 3 DIHNPATDHHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHI 62
Query: 83 LNVGCIPS-KALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEG 141
+V P A+ ++ +A +++ +V L ++ V+ T+ +G
Sbjct: 63 YDVAGFPEVPAIDLVESLWAQAE--------RYN-PDVVL-------NETVTKYTKLDDG 106
Query: 142 LFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD------VKSLPGIT 195
F+ T G V + + ++IA G + L I
Sbjct: 107 TFE--------------------TRTNTG--NVYRSRAVLIAAGLGAFEPRKLPQLGNID 144
Query: 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVP 251
V + K++V++G G L+ + + VT+V EF
Sbjct: 145 HLTGSSVYYAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG---- 200
Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311
G+ + +R+ + L+T+V ++ S + ++ G K +EAD +L+
Sbjct: 201 --HGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLIL 258
Query: 312 AGRTPFTAGLG-LDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
G F + LG L + +E + + V+ T++ G+YA GD+
Sbjct: 259 IG---FKSNLGPLARWDLELYE-NALVVDSHMKTSVDGLYAAGDI 299
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 6e-21
Identities = 46/337 (13%), Positives = 87/337 (25%), Gaps = 82/337 (24%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
V+++G GP G AA + G + +GG V +P Y E
Sbjct: 392 VLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQ- 450
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
K ++ L ++
Sbjct: 451 -ITKLLKKNKESQLALGQ-------------------------------------KPMTA 472
Query: 166 DTIEGGNTVVKGKNIIIATGS----------DVKSLPGITIDEKRIVSSTGALA-LNEVP 214
D + +IIATG+ +PG ++ + ++
Sbjct: 473 DDVLQYGA----DKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIG 528
Query: 215 KKLVVIGAG--YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
K++V++ A ++ + A G EVT+V R L + ++
Sbjct: 529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEE 588
Query: 273 MLKTKVVGVDLSGDGVKLT--------------LEPAAGGEKTILEADVVLVSAGRTPFT 318
+ ++ + A +E D +++ GR
Sbjct: 589 LGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648
Query: 319 AGL-GLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354
L E + +Y IGD
Sbjct: 649 TLWNELKARESEWAENDIKG-----------IYLIGD 674
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 5e-20
Identities = 67/341 (19%), Positives = 102/341 (29%), Gaps = 88/341 (25%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
V+V+G GP G AA G E LGG +P + Y EA+
Sbjct: 394 VLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAV- 452
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
L + V + S ++
Sbjct: 453 ------------------------------------LAELPNVEIYRE-------SPMTG 469
Query: 166 DTIEGGNTVVKGKNIIIATGS----------DVKSLPGITIDEKRIVSSTGALALN-EVP 214
D I +++I ATG+ +LP + +++ A
Sbjct: 470 DDIVEFG----FEHVITATGATWRTDGVARFHTTALPIA--EGMQVLGPDDLFAGRLPDG 523
Query: 215 KKLVVIGAG--YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF-QRSLEKQKMK 271
KK+VV Y+G + + A+ G EV++V A + + QR L + +
Sbjct: 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVA 583
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA---GLGLDKIGV 328
+ VV V G +T+ + LE D V++ R P L
Sbjct: 584 RVTDHAVVAVGAGG----VTVRDTYASIERELECDAVVMVTARLPREELYLDL------- 632
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDG 369
V R A I V IGD P A G
Sbjct: 633 ---------VARRDAGEIASVRGIGDAW-APGTIAAAVWSG 663
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 7e-20
Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 28/189 (14%)
Query: 181 IIATGSDVKSLPGITIDEKRI-----VSSTGAL--ALNEVPKKLVVIGAGYIGLEMGSVW 233
I ATG D + L + D + L L+ K VVIG GYIGLE +V
Sbjct: 112 IWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVL 171
Query: 234 ARLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LT 291
+ G VT++E + + + +Q + + ++ G V +
Sbjct: 172 TKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVR 231
Query: 292 LEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNI 346
+ G +++ AD+V+V G P AG GV+ D+ R T++
Sbjct: 232 M---QDG--SVIPADIVIVGIGIVPCVGALISAGASGGN-GVDVDEFCR--------TSL 277
Query: 347 PGVYAIGDV 355
VYAIGD
Sbjct: 278 TDVYAIGDC 286
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 7e-20
Identities = 44/341 (12%), Positives = 100/341 (29%), Gaps = 81/341 (23%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSS 97
++A D VIG GP G A++ + + + + +S
Sbjct: 1 SNAMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN------------TNRNRVTQNS 48
Query: 98 HMY--------HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVT 149
H + E + +K+ SV +K V +T+ GLF+
Sbjct: 49 HGFITRDGIKPEEFKEIGLNEVMKYPSVHY--------YEKTVVMITKQSTGLFE----- 95
Query: 150 YVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI---VSS-- 204
+ T + + +++ATG + P I + + S
Sbjct: 96 ---------------IVTKDHT--KYLAERVLLATGMQEE-FPSIPNVREYYGKSLFSCP 137
Query: 205 --TGALALNEVPKKLVVIGAGYIG-LEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF 261
G + + L++I L M + +++ + + E+ +
Sbjct: 138 YCDGWELKD---QPLIIISENEDHTLHMTKLVYNWSTDLVIA--------TNGNELSQTI 186
Query: 262 QRSLEKQKMKFMLK--TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319
L + + + + + G V+ +E +
Sbjct: 187 MDELSNKNIPVITESIRTLQGEGGYLKKVEF-------HSGLRIERAGGFIVPTFFRPNQ 239
Query: 320 GLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360
+ +++G E G +++ T+ +Y G+
Sbjct: 240 FI--EQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP 278
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 38/234 (16%)
Query: 181 IIATGSDVKSLPGITIDEKRIV------SSTGALALNEV---PKKLVVIGAGYIGLEMGS 231
++ATG + LP + + + A + +LVVIG GYIGLE+ +
Sbjct: 107 VLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAA 166
Query: 232 VWARLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290
+ VT+++ AA + + ++ + + T+V G ++S D K+
Sbjct: 167 TAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKV 226
Query: 291 TLEPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATN 345
T G T L AD+V+ G P AGL +D G+ ++ + T+
Sbjct: 227 TAVLCEDG--TRLPADLVIAGIGLIPNCELASAAGLQVDN-GIVINEHMQ--------TS 275
Query: 346 IPGVYAIGDV--IPGPMLAHK--------AEEDGVACVEFLAGKHGHVDYDKVP 389
P + A+GD + A E L GK + P
Sbjct: 276 DPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK--VPRDEAAP 327
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-19
Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 37/230 (16%)
Query: 181 IIATGSDVKSLPGITIDEKRIV---SSTGALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
+IATGS +++ +V + L + +L+++G G IG E+ +
Sbjct: 104 VIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTAR 163
Query: 235 RLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
+LG VT++E ++ V + I + L + ++ L T VVG G ++
Sbjct: 164 KLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMA- 222
Query: 294 PAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNIPG 348
+ G AD L+ G P AGL D+ GV D G T G
Sbjct: 223 --SDG--RSFVADSALICVGAEPADQLARQAGLACDR-GVIVDHCGA--------TLAKG 269
Query: 349 VYAIGDV--IPGPMLAHK-------AEEDGVACVEFLAGKHGHVDYDKVP 389
V+A+GDV P + A+ A + GK +V ++P
Sbjct: 270 VFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGK--NVSAPQLP 317
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 2e-19
Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 30/187 (16%)
Query: 181 IIATGSDVKSLPGITIDEKRIV---SSTGALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
++ATG+ ++LP + + + A + +L+++G G IGLE+ +
Sbjct: 106 VLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATAR 165
Query: 235 RLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293
G V++VE + + + R Q + + V G V L
Sbjct: 166 TAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV--DGVVLL--- 220
Query: 294 PAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNIPG 348
G T + AD+V+V G AGL D G+ D GR T P
Sbjct: 221 --DDG--TRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGR--------TTCPD 267
Query: 349 VYAIGDV 355
VYA+GDV
Sbjct: 268 VYALGDV 274
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 5e-19
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 27/188 (14%)
Query: 181 IIATGSDVKSLPGITIDEKRIV---SSTGALALNEV---PKKLVVIGAGYIGLEMGSVWA 234
++ATG+ + L ++ + + L + K +VVIGAG+IGLE +
Sbjct: 103 VLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATAR 162
Query: 235 RLGSEVTVVEFAADI-VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTL 292
G EV VVE A + + EI F ++ + + GD V + L
Sbjct: 163 AKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVL 222
Query: 293 EPAAGGEKTILEADVVLVSAGRTPFT-----AGLGLDKIGVETDKMGRIPVNERFATNIP 347
+ G L D+V+V G P AGL G+ D+ T+ P
Sbjct: 223 ---SDG--NTLPCDLVVVGVGVIPNVEIAAAAGLPTAA-GIIVDQQLL--------TSDP 268
Query: 348 GVYAIGDV 355
+ AIGD
Sbjct: 269 HISAIGDC 276
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 9e-19
Identities = 47/329 (14%), Positives = 86/329 (26%), Gaps = 84/329 (25%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY---- 100
DV++IGG G AA++ + ++ G SH +
Sbjct: 4 DVIIIGGSYAGLSAALQLGRARKNILLVDA-GERRN-----------RFASHSHGFLGQD 51
Query: 101 ----HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 156
E + ++ ++ + + +G G F
Sbjct: 52 GKAPGEIIAEARRQIERYPTIHW-------VEGRVTD--AKGSFGEF------------- 89
Query: 157 FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI---VSS----TGALA 209
V +D G +I+A G + LP I +R V G
Sbjct: 90 -----IVEID----GGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCPYCHGYEL 139
Query: 210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK 269
K+ VI A + + + G + Q +L +
Sbjct: 140 DQ---GKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDAD---------QHALLAAR 187
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG---RTPFTAGLGLDKI 326
+ T++ + V L + + + + LG
Sbjct: 188 GVRVETTRIREI-AGHADVVL-------ADGRSIALAGLFTQPKLRITVDWIEKLGCAV- 238
Query: 327 GVETDKMGRIPVNERFATNIPGVYAIGDV 355
E I + T G++A GDV
Sbjct: 239 -EEGPMGSTIVTDPMKQTTARGIFACGDV 266
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 44/250 (17%), Positives = 80/250 (32%), Gaps = 58/250 (23%)
Query: 181 IIATGSD-----VKSLPGI----TI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMG 230
IIA+GS V I + D +I + K +IG G +G+E+
Sbjct: 109 IIASGSIANKIKVPHADEIFSLYSYDDALKI------KDECKNKGKAFIIGGGILGIELA 162
Query: 231 SVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK 289
G+ ++ + +D + + L++ +K + +
Sbjct: 163 QAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEMG------- 215
Query: 290 LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349
++ + V+ + G P + + + + G I VN+ T+I +
Sbjct: 216 -----------DLIRSSCVITAVGVKPNLD-F-IKDTEIASKR-G-ILVNDHMETSIKDI 260
Query: 350 YAIGDV--IPGPMLAH--KAEEDGVACVEFLAGKHGHVDYD--------KVPGVVYTHPE 397
YA GDV G A + G G+ Y KV G+
Sbjct: 261 YACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDAS--YSEIIPSPILKVSGI-----S 313
Query: 398 VASVGKTEEQ 407
+ S G E
Sbjct: 314 IISCGDIENN 323
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 44/335 (13%), Positives = 104/335 (31%), Gaps = 49/335 (14%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
V +IG G G AI G+ I ++G +G + + P +
Sbjct: 6 KVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHW---PKSTRTITPSFTS--- 59
Query: 105 HSFASHGVKFSSVE----VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFIS 159
+ F + S++ + L Y
Sbjct: 60 NGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQV------------VANHYELNIFE 107
Query: 160 PSEV-SVDTIEGGNTV------VKGKNIIIATGS-DVKSLPGITIDEKRIVSSTGALALN 211
+ V ++ + T+ I +ATG + P +
Sbjct: 108 NTVVTNISADDAYYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFN-- 165
Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV-------EFAADIVPSMDGEIRKQFQRS 264
+ VVIG G + A+ GS++ + + AD + R++
Sbjct: 166 --KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV 223
Query: 265 LEK-QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL 323
+++ +++ + V +D + ++ + G+ + +L + +
Sbjct: 224 IKQGARIEMNVHYTVKDIDFNNGQYHISFD---SGQSVHTPHEPILATGFDATK--NPIV 278
Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358
++ V T++ ++ ++ +T P ++ IG +
Sbjct: 279 QQLFVTTNQDIKLTTHDE-STRYPNIFMIGATVEN 312
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 38/206 (18%)
Query: 167 TIEGGNTVVKGKNIIIATGSDVK-----SLPGITIDEKRIVSSTGALALNEVP------- 214
+ K +II G+ L E + + V
Sbjct: 102 KLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYF-------VDDLQKFAG 154
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQRSLEKQKM 270
+++ ++G G ++ + + EV+++ +F A + +L K+
Sbjct: 155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH----------EHSVENLHASKV 204
Query: 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-LDKIGVE 329
+ + +L LE G K ILE D ++V+ G F + LG + G++
Sbjct: 205 NVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYG---FVSSLGPIKNWGLD 261
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDV 355
+K I V TNI G +A GD+
Sbjct: 262 IEK-NSIVVKSTMETNIEGFFAAGDI 286
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85
D+ +IGGGP G A IE LGG +
Sbjct: 9 DITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL 49
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 4e-15
Identities = 50/203 (24%), Positives = 81/203 (39%), Gaps = 38/203 (18%)
Query: 170 GGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VS--ST--GALALNEVPKKLVV 219
K ++I+ G + L PG E+ +S S L N + + V
Sbjct: 107 KRKGEFKADSVILGIGVKRRKLGVPG----EQEFAGRGISYCSVADAPLFKN---RVVAV 159
Query: 220 IGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMKFML 274
IG G LE + + ++V ++ F A + +K ++F+L
Sbjct: 160 IGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQ----------PIYVETVKKKPNVEFVL 209
Query: 275 KTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
+ V + GD V ++ +E GE L + V + G P T G+ETD
Sbjct: 210 NSVVKEIK--GDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFA--KSNGIETDT 265
Query: 333 MGRIPVNERFATNIPGVYAIGDV 355
G I V+E T++PGV+A GD
Sbjct: 266 NGYIKVDEWMRTSVPGVFAAGDC 288
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
++ DV+++G GP Y AA+ +A+ LKT I +
Sbjct: 10 VKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGE 46
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 9e-15
Identities = 60/366 (16%), Positives = 105/366 (28%), Gaps = 119/366 (32%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
+ V+G GP G AI AA G + T + +GG IP K + + Y+ M
Sbjct: 376 LAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRM- 434
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
GV K N V+
Sbjct: 435 -IEVTGVT-----------------------------LKLNH--------------TVTA 450
Query: 166 DTIEGGNTVVKGKNIIIATGSD--VKSLPGITIDEKRIVSSTGALA-LNEVPKKLVVIGA 222
D ++ + I+A+G + G ID +++S L V K+ +IG
Sbjct: 451 DQLQAFDET------ILASGIVPRTPPIDG--IDHPKVLSYLDVLRDKAPVGNKVAIIGC 502
Query: 223 GYIGLEMGSVWARLGSEVT--VVEFAADIVPSMDGEIRKQFQ------------------ 262
G IG + ++ G + + F + +
Sbjct: 503 GGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQR 562
Query: 263 ------------------RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE 304
+L + +K + +D DG+ + GE +L
Sbjct: 563 KASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV----INGETQVLA 616
Query: 305 ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD-VIPGPMLAH 363
D V++ AG+ P + + + V+ IG + + A
Sbjct: 617 VDNVVICAGQEPNR------------------ALAQPLIDSGKTVHLIGGCDVAMELDAR 658
Query: 364 KAEEDG 369
+A G
Sbjct: 659 RAIAQG 664
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 6e-13
Identities = 63/205 (30%), Positives = 85/205 (41%), Gaps = 37/205 (18%)
Query: 167 TIEGGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VSS--T--GALALNEVPKK 216
T+ G N + K +I+ATG+D + L PG E VS+ T G KK
Sbjct: 102 TVRGYNGEYRAKAVILATGADPRKLGIPG----EDNFWGKGVSTCATCDGFFYKG---KK 154
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMK 271
+VVIG G +E G + EVTV+ A+ K Q R+ KMK
Sbjct: 155 VVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRAN----------KVAQARAFANPKMK 204
Query: 272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330
F+ T V + D V + L GE + L D V + G P T K V
Sbjct: 205 FIWDTAVEEI-QGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNT---AFVKDTVSL 260
Query: 331 DKMGRIPVNERFATNIPGVYAIGDV 355
G + V + TNIP ++A GDV
Sbjct: 261 RDDGYVDVRDEIYTNIPMLFAAGDV 285
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 2e-12
Identities = 40/216 (18%), Positives = 66/216 (30%), Gaps = 18/216 (8%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSS--H 98
+DV+++G G G AA A+ LK IE A GG G + S ++
Sbjct: 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHL 124
Query: 99 MYHEAMHSFASHG---VKFSSVEVDLPAMMAQKDKA---VSNLTRGIEGLFKKNKVTYVK 152
E + G V + + + N T +E L + +
Sbjct: 125 FLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATC-VEDLVTRPPTEKGE 183
Query: 153 GY--GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTG--AL 208
G + + V T G N+I G ++ I+S+TG
Sbjct: 184 VTVAGVVTNWTLV---TQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGP 240
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE 244
K++V I M + V+
Sbjct: 241 FGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIH 276
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 5e-12
Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 35/204 (17%)
Query: 170 GGNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VSS--T--GALALNEVPKKLVV 219
+ K++IIATG K G E VS+ T G N K++ V
Sbjct: 96 EDGKTFEAKSVIIATGGSPKRTGIKG----ESEYWGKGVSTCATCDGFFYKN---KEVAV 148
Query: 220 IGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMKFML 274
+G G +E A + +V ++ F + K++F+
Sbjct: 149 LGGGDTAVEEAIYLANICKKVYLIHRRDGFRCA----------PITLEHAKNNDKIEFLT 198
Query: 275 KTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--LDKIGVETD 331
V + GV L+++ A EK L + G A L + + + D
Sbjct: 199 PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCD 258
Query: 332 KMGRIPVNERFATNIPGVYAIGDV 355
+ G I V+ TN+ G++A GD+
Sbjct: 259 EYGSIVVDFSMKTNVQGLFAAGDI 282
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
D +IGGGP G A + A + G+K + ++G GG
Sbjct: 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGG 38
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 8e-12
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 32/201 (15%)
Query: 171 GNTVVKGKNIIIATGSDVKSL--PGITIDEKRI----VSS--T--GALALNEVPKKLVVI 220
G K +I+ TGS K G E VS+ T G N K++ V+
Sbjct: 101 GGKTELAKAVIVCTGSAPKKAGFKG----EDEFFGKGVSTCATCDGFFYKN---KEVAVL 153
Query: 221 GAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276
G G LE A + S++ ++ EF A PS ++ + +K++ +
Sbjct: 154 GGGDTALEEALYLANICSKIYLIHRRDEFRAA--PST------V-EKVKKNEKIELITSA 204
Query: 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--LDKIGVETDKMG 334
V V GV G L + G L K ++ G
Sbjct: 205 SVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGG 264
Query: 335 RIPVNERFATNIPGVYAIGDV 355
++ V+ + T++ G++A GD+
Sbjct: 265 QVSVDLKMQTSVAGLFAAGDL 285
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
++ DV +IGGGP G A + A + GLK + ++G GG
Sbjct: 1 SNAMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGG 41
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 3e-10
Identities = 44/218 (20%), Positives = 72/218 (33%), Gaps = 27/218 (12%)
Query: 43 ENDVVVIGGGPGGYVAAIK-AAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 101
E DVVV+G G G AA + + ++ IE+ + GG G L + +
Sbjct: 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG-----GAWLGGQLFSAMIVRK 93
Query: 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS 161
A GV + + + A + + L + V
Sbjct: 94 PAHLFLDEIGVAYDEQDTYVVV-----KHAALFTSTIMSKLLARPNVKLFNA-------- 140
Query: 162 EVSV-DTIEGGNTV---VKGKNIIIATGSDVKSLPGITIDEKRIVSSTG--ALALNEVPK 215
V+ D I GN V V ++ + ++ K +VSS G K
Sbjct: 141 -VAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 199
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM 253
+L IG M ++ E +V ++VP M
Sbjct: 200 RLKSIGMIDHVPGMKALDMNTA-EDAIVRLTREVVPGM 236
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 6e-10
Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 27/228 (11%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
E D+V++G G G AA + L L+ T +E A GG G L + M
Sbjct: 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQ-----LFSAMVMR 133
Query: 101 HEAMHSFASHGVKF----------SSVEVD---LPAMMAQKDKAVSNLTRGIEGLFKKNK 147
A GV + + L ++ + + + N T + + +K+
Sbjct: 134 KPADVFLDEVGVPYEDEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHH 193
Query: 148 VTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTG- 206
+ + I G VV ++ D ++ TI+ I+S+TG
Sbjct: 194 AESSSSSDDG-EAEDEAKVRIAG---VVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGH 249
Query: 207 -ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM 253
K+LV + M + + E +V +IVP +
Sbjct: 250 DGPFGAFSVKRLVSMKQMERLNGMRGLDMQSA-EDAIVNNTREIVPGL 296
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 57/396 (14%), Positives = 103/396 (26%), Gaps = 109/396 (27%)
Query: 46 VVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE 102
V+V+GG G AA +L I K +
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINK--------------------SRFSYFRP 43
Query: 103 AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
A+ A ++VDL + + + +G + I
Sbjct: 44 ALPHVAIGVRDVDELKVDL------------------SEALPEKGIQFQEGTVEKIDAKS 85
Query: 163 --VSVDTIEGGNTVVKGKNIIIATGS--DVKSLPGI---------------------TID 197
V +G + +I+ G+ + + G +
Sbjct: 86 SMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQ 145
Query: 198 EKRIVSSTGALALNEVPKKLVV-----------IGAGY-IGLEMGSVWARLG----SEVT 241
I +G PK V G + + L + + + G VT
Sbjct: 146 GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVT 205
Query: 242 VVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT 301
V + + + RK + +K + K+ + + G
Sbjct: 206 VFS-PGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIR--EHEIVD-----EKGNT- 256
Query: 302 ILEADVVLVSAGRTP----FTAGLGLDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDV- 355
+ AD+ ++ T + L D G IP + + VYA+GD
Sbjct: 257 -IPADITILLPPYTGNPALKNSTPDL------VDDGGFIPTDLNMVSIKYDNVYAVGDAN 309
Query: 356 -IPGPMLAHKAEEDGVACVE----FLAGKHGHVDYD 386
+ P L + A G + L Y
Sbjct: 310 SMTVPKLGYLAVMTGRIAAQHLANRLGVPTKVDKYY 345
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FATNIPGVYAIGDVI 356
+ L+ADVV+ + G + ++ ++ V+ T+ P V+A GD++
Sbjct: 424 DQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 483
Query: 357 PGPMLAHKAEEDG----VACVEFLAGKHG 381
++ DG +++ ++G
Sbjct: 484 GMANTTVESVNDGKQASWYIHKYIQAQYG 512
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 34/201 (16%)
Query: 170 GGNTVVKGKNIIIATGSDVKSLPGITIDEKRI----VSS--T--GALALNEVPKKLVVIG 221
+ + +I+A G+ + L + E+ + VSS T G + + + VIG
Sbjct: 108 ADGQTHRARAVILAMGAAARYL-QVP-GEQELLGRGVSSCATCDGFFFRD---QDIAVIG 162
Query: 222 AGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMKFMLKT 276
G +E + R VT+V EF A K R+ K++F+
Sbjct: 163 GGDSAMEEATFLTRFARSVTLVHRRDEFRAS----------KIMLDRARNNDKIRFLTNH 212
Query: 277 KVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335
VV V V L + G +T L V V+ G P + GL + ++ D G
Sbjct: 213 TVVAV-DGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRS---GLVREAIDVDPDGY 268
Query: 336 IPVNERF-ATNIPGVYAIGDV 355
+ V R +T++PGV+A GD+
Sbjct: 269 VLVQGRTTSTSLPGVFAAGDL 289
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 5e-08
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK 332
++ + D +G + T + G E ++AD+V+ + G P D+ ++ +
Sbjct: 339 AVRIHLGVADATG---RQTPQVIEGSEF-TVQADLVIKALGFEPEDLPNAFDEPELKVTR 394
Query: 333 MGRIPVNER-FATNIPGVYAIGDV 355
G + V+ R TN+ GV+A GD+
Sbjct: 395 WGTLLVDHRTKMTNMDGVFAAGDI 418
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 34/195 (17%), Positives = 56/195 (28%), Gaps = 56/195 (28%)
Query: 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCIP----------- 89
D DVVV+G G G+ AAI A G K IEK +GG L G +
Sbjct: 125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKK 184
Query: 90 ---SKALLHSSHMYH-----------EAMHSFA-----------SHGVKFSSVEVDLPAM 124
S L + + + G + V +
Sbjct: 185 ITDSPEL----MFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVG-MMGGA 239
Query: 125 M-------AQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFISPSE-----VSVDTIEG 170
+++ + + K + + + + + V +
Sbjct: 240 SVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYK 299
Query: 171 GNTVVKGKNIIIATG 185
G VK +I+ATG
Sbjct: 300 GYYWVKADAVILATG 314
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 8e-08
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
E DVVV G G G A+I+AA+ G +E+ GG
Sbjct: 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGA 79
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 9e-08
Identities = 49/214 (22%), Positives = 80/214 (37%), Gaps = 45/214 (21%)
Query: 167 TIEGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSST------------GALAL-- 210
+ + + +I+A G+ K S G ++ GA +
Sbjct: 103 KLFTDSKAILADAVILAIGAVAKRLSFVG----SGEVLGGFWNRGISACAVCDGAAPIFR 158
Query: 211 NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSL 265
N K L VIG G +E + + GS+V ++ F A K Q R+L
Sbjct: 159 N---KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRAS----------KIMQQRAL 205
Query: 266 EKQKMKFMLKTKVVGV--DLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG 322
K+ + + VV D D + L ++ G+ + L+ + + G P T
Sbjct: 206 SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATK--- 262
Query: 323 LDKIGVETDKMGRIPVNERF-ATNIPGVYAIGDV 355
GVE D G + T++PGV+A GDV
Sbjct: 263 FLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDV 296
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 36/181 (19%), Positives = 72/181 (39%), Gaps = 45/181 (24%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTC--LNVGCIPSKALL 94
+ ++IG G G A + A+LG T + +G G C N+ P+ L
Sbjct: 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS 65
Query: 95 HSSHMYHEAMHSF---------ASHGVKF------------SSVEVDLPAMMAQKDKAVS 133
+ H A+ + A G+ + + ++ + + ++ DK
Sbjct: 66 QNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQI-VEMLKSECDKY-- 122
Query: 134 NLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193
G + + +++V+ V + I E ++ +T + KN+I+ATG S+PG
Sbjct: 123 ----GAK-ILLRSEVSQV----ERIQNDEKVRFVLQVNSTQWQCKNLIVATGG--LSMPG 171
Query: 194 I 194
+
Sbjct: 172 L 172
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCIP 89
DVV+IG G G AA+ A G K +EK GG T L G +
Sbjct: 128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMN 173
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
A S+ V+V+G G G+ A++ A + G ++K GG
Sbjct: 116 AGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 159
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 39/206 (18%)
Query: 169 EGGNTVVKGKNIIIATGSDVK--SLPGITIDEKRI----VSS--T--GALAL--NEVPKK 216
V II+ATG+ K LPG E+ +S+ GA+ + N K
Sbjct: 123 NEDAEPVTTDAIILATGASAKRMHLPG----EETYWQKGISACAVCDGAVPIFRN---KP 175
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVV----EFAADIVPSMDGEIRKQFQ-RSLEKQKMK 271
L VIG G E + GS+V ++ A Q R+ + +K++
Sbjct: 176 LAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRAS----------TIMQKRAEKNEKIE 225
Query: 272 FMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET 330
+ T + G + L ++ E+T L + + G TP T + V+T
Sbjct: 226 ILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATK---IVAGQVDT 282
Query: 331 DKMGRIPVNERF-ATNIPGVYAIGDV 355
D+ G I T++PG +A GDV
Sbjct: 283 DEAGYIKTVPGSSLTSVPGFFAAGDV 308
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 51/182 (28%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTC--LNVGCIPSKALL 94
DVV+IG G G + AI+A + G + I+ A G G C N+ P L
Sbjct: 29 DVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLS 88
Query: 95 HSSHMYHEAMHSF---------ASHGVKF------------SSVEVDLPAMMAQKDKAVS 133
+ H A+ + HG+ + S+ ++ + +MA+ +A
Sbjct: 89 GNPHFCKSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDI-IRMLMAEMKEA-- 145
Query: 134 NLTRGIEGLFKKNKVTYV-KGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP 192
G++ L + + V + F + V ++++A+G KS+P
Sbjct: 146 ----GVQ-LRLETSIGEVERTASGFR---------VTTSAGTVDAASLVVASGG--KSIP 189
Query: 193 GI 194
+
Sbjct: 190 KM 191
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 36/283 (12%), Positives = 87/283 (30%), Gaps = 39/283 (13%)
Query: 133 SNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS--DVKS 190
++ I ++ + ++ + I ++ +G V ++IATG ++
Sbjct: 59 DDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGN--TVHYDYLMIATGPKLAFEN 116
Query: 191 LPGITIDEKRIVSSTGAL----------ALNEVPKKLVVIGAGYIG---------LEMGS 231
+PG E + S AL P +V+ + + S
Sbjct: 117 VPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVAS 176
Query: 232 VWARLG-----SEVTVVEFAADIVPSMDG---EIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
+ G T + I + + + L+++ ++ KV V+
Sbjct: 177 DLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVE- 235
Query: 284 SGDGVKLTLEPAAGG--EKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER 341
+ + +T G ++ +L ++ F + + + G + V+E
Sbjct: 236 -DNKMYVTQVDEKGETIKEMVLPVKFGMMIP---AFKGVPAVAGVEGLCNPGGFVLVDEH 291
Query: 342 F-ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV 383
+ ++A G I P + G ++
Sbjct: 292 QRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSA 334
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
+E DV+V+G G G A + +LG IE G +GG
Sbjct: 11 RQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV 54
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
+ S D VVIG G G A Q G+K IE +GGT
Sbjct: 4 RAKSPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGT 47
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 58/188 (30%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTCLNV--GCIPSKALL 94
DV+VIGGGP G +AAI AA+ G ++K LG G C NV + +
Sbjct: 28 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRC-NVTNRLPLDEIVK 86
Query: 95 H------------SSHMYHEAMHSFASHGVKF-------------SSVEVDLPAMMAQKD 129
H S + + F + GVK + V + A++ +
Sbjct: 87 HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSV-VDALLTRLK 145
Query: 130 KAVSNLTRGIEGLFKKNKVTYVK---GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGS 186
G++ + V ++ G K + I V++ +++IA G
Sbjct: 146 DL------GVK-IRTNTPVETIEYENGQTKAV---------ILQTGEVLETNHVVIAVGG 189
Query: 187 DVKSLPGI 194
KS+P
Sbjct: 190 --KSVPQT 195
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 30 SFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
S + + DVVV+G G G A + GL E +GG
Sbjct: 8 SVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGV 59
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82
D +++G G G V A + +L K IEKR +GG
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNA 40
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
VV+G G GG +A A+ G + +EK +GG
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 6e-06
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG---TCLNVGCIPSKALLH--SSHM 99
D +++G G G V A + A G + +++R +GG C + + L+H H+
Sbjct: 31 DYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGV----LIHPYGPHI 86
Query: 100 YH---EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNK 147
+H + + + S ++ + + A + + + + L+ N
Sbjct: 87 FHTNSKDVFEYLSRFTEWRPYQHRVLASVDGQLLPIPINLDTVNRLYGLNL 137
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 6e-06
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG-CIPSKAL 93
DV++IGGG G AA + ++ GLK ++ + G +
Sbjct: 8 DVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHF 57
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 7e-06
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
DV+VIG GP G VAA + G K +EK
Sbjct: 7 DVLVIGAGPAGTVAASLVNKSGFKVKIVEK 36
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 9e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
S + V +IGGGP G VA + +LG T E+
Sbjct: 18 GSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYER 54
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLH--SSHMYH- 101
++++G G G V + A+ G + I++R +GG + + ++H H++H
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT 64
Query: 102 --EAMHSFASHGVKF 114
E + ++ + +
Sbjct: 65 DNETVWNYVNKHAEM 79
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84
DV+V+G GP G AA +A++ G + +++R GGT L+
Sbjct: 130 DVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD 169
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
D++VIGGGPGG A A G + +E+
Sbjct: 9 DLIVIGGGPGGSTLASFVAMRGHRVLLLER 38
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76
DV+V+GGGP G AA+ A+ GLK ++
Sbjct: 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGR 34
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
VVIG G GG ++A + ++ G + E+ GG
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGG 37
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKA-AQLGLKTTCIEKRGALGGT 81
A + D VVIG G GG A K +LGL T +K GGT
Sbjct: 3 AQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGT 47
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 8e-05
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 8/134 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAA-QLGLKTTCIEKRGALGGTC-----LNVGCIPSKALLHSSH 98
D+ V+G G G A + A QL + +E+R +GG G K H H
Sbjct: 9 DLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFH 68
Query: 99 MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
++ + + F+ + AM + + F K + + I
Sbjct: 69 TSNKRVWDYVRQFTDFTDYRHRVFAMHNGQAYQFPMGLGLVSQFF--GKYFTPEQARQLI 126
Query: 159 SPSEVSVDTIEGGN 172
+ +DT + N
Sbjct: 127 AEQAAEIDTADAQN 140
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGALGGTCLNVGCIPSKAL 93
++E DVV++G GP G AA + QL L+ +EK +G L+ C+ +A
Sbjct: 33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAF 91
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 44/356 (12%), Positives = 97/356 (27%), Gaps = 94/356 (26%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLG-----LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHM 99
D++ +G GP AI + L+ ++K+G + + S++ L S +
Sbjct: 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR---WHGNTLVSQSELQISFL 88
Query: 100 YHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS 159
+ F + + D+ V + G + Y++
Sbjct: 89 KDLVSLRNPTSPYSF-------VNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQ 141
Query: 160 PS----------------------EVSVDTIEGGNTVVKGKNIIIATGSD--VKSLPGIT 195
V +G V + ++++ G + +
Sbjct: 142 EQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRAL 201
Query: 196 IDEKRIVSST-------GALALNEVPKKLVVIGAGYIGLEMGSVWARL--GSEVTVV--- 243
+ R+ + + P K+ +IG G E + ++
Sbjct: 202 KGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRA 261
Query: 244 -----------------EFAADIVPSMDGEIRKQF------------------------- 261
D++ S + R++
Sbjct: 262 SALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFY 321
Query: 262 -QRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316
Q+ + F T V + G++L L A GE ++ D V+++ G
Sbjct: 322 RQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYER 377
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 59/355 (16%), Positives = 108/355 (30%), Gaps = 78/355 (21%)
Query: 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYH 101
D DVVVIGGG G A + GL ++ + GG + S L +
Sbjct: 2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHA--WHSLHLFSPAGWSS 59
Query: 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYG-KFISP 160
+ + + + + ++ L + Y + Y + P
Sbjct: 60 IPGWPMPASQGPYPA-----------RAEVLAYLAQ------------YEQKYALPVLRP 96
Query: 161 SEV-SVDTIEGGNTVVKG-------KNIIIATGSDVK----SLPGITIDEKRIVSS---T 205
V V VV + +I ATG+ + G+ + S +
Sbjct: 97 IRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYS 156
Query: 206 GALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV-EFAADIVPSMDGEIRKQFQRS 264
++ +IG G G ++ + + + + A + +DG R F+R+
Sbjct: 157 TPAPFAG--MRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDG--RVLFERA 212
Query: 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTI---------------------L 303
E+ K + + + GD V + A +
Sbjct: 213 TERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTER 272
Query: 304 EADVVLVSAG---RTPFTAGLGLDKIGVETDKMGRIPVNER--FATNIPGVYAIG 353
D V+ G GL L G++ V+ A +P V+ +G
Sbjct: 273 AFDAVIWCTGFRPALSHLKGLDL------VTPQGQVEVDGSGLRALAVPSVWLLG 321
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84
DV +IGGGP G AA++ Q L IE+RG LGG
Sbjct: 110 DVAIIGGGPAGIGAALELQQ-YLTVALIEERGWLGGDMWL 148
|
| >3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 3e-04
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTC 82
DV+VIG GP G AA + Q+ G ++ GG
Sbjct: 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLA 50
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKT-TCIEKRGALGG 80
S S ++ + +IG GP G A + Q G T +E+ +GG
Sbjct: 2 SISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 4e-04
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76
+ D +VIG G GG VAA++ Q G+ T +E G
Sbjct: 6 LADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVE-MG 43
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Length = 497 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 6e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75
+V+G GP G AA++ A LG + +EKR
Sbjct: 94 KCLVVGAGPCGLRAAVELALLGARVVLVEKR 124
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALGGTC 82
+V+IG GP G AA++ +LG K E GG
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLS 49
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 298 GEKTILEADVVLVSAG-RTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356
GE+ L A +V+ S G R T GL D D+ G IP P Y +G +
Sbjct: 308 GEREELPAQLVVRSVGYRGVPTPGLPFD------DQSGTIPNVGGRINGSPNEYVVGWIK 361
Query: 357 PGP 359
GP
Sbjct: 362 RGP 364
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 8e-04
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 46 VVVIGGGPGGYVAAIKAAQL-------GLKTTCIEKRGALGGTCL---NVGCIPSKALLH 95
+ ++G GP G +A ++A Q + C EK+ GG G + +H
Sbjct: 5 IAILGAGPSG-MAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH 63
Query: 96 SSHMY 100
SS MY
Sbjct: 64 SS-MY 67
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 8e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
VVIG G G V+A++ + G++T +E
Sbjct: 3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEM 36
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 507 | |||
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 100.0 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 100.0 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 100.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.98 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.98 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.97 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.97 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.97 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.96 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.95 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.93 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.9 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.87 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.83 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.75 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.73 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.63 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.62 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.58 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.47 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 99.36 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.29 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 99.29 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.18 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 99.18 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 99.16 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.1 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.06 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.04 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.04 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.99 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.98 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.96 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.93 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.93 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.92 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.92 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.91 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.91 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.9 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.89 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.88 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.88 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.88 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.88 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.87 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.85 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.84 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.84 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.83 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.8 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.79 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.78 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.77 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.77 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.73 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.73 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.72 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.7 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.7 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.67 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.66 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.65 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.63 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.63 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.6 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 98.6 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.59 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.59 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.59 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.59 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.59 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.57 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.57 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.56 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.56 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.54 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.54 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.53 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.53 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.52 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.5 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.49 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.49 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.49 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.48 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.48 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.48 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.47 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.46 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.46 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 98.45 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.45 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 98.45 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.45 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.45 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.44 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.43 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.42 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.41 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.41 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.4 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.4 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.4 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.39 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.36 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.34 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.33 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.32 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.31 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.31 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.31 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.31 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.3 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.3 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.27 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.27 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.27 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.26 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.26 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 98.25 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.25 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.25 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.24 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.24 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.23 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.22 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.22 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.22 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.21 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.21 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.2 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.2 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.19 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.18 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.17 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.17 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 98.16 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.16 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 98.16 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.16 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.16 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.15 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.15 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.15 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 98.14 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.14 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 98.14 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 98.13 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.13 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.13 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.13 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.12 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 98.12 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.11 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.11 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.11 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.11 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.1 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.1 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 98.09 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.09 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.09 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.09 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.09 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 98.07 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.07 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 98.07 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.06 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 98.06 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.06 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 98.06 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.06 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 98.05 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.05 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.04 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 98.03 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.03 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.01 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.01 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.01 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.01 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.0 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 98.0 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.0 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.99 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.98 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 97.98 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.98 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.97 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.97 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.97 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.96 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.96 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.95 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.95 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.94 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.94 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 97.94 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 97.92 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.92 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.91 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.91 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.9 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.88 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.88 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.86 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 97.86 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 97.86 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.86 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.85 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.84 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.84 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.84 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.83 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.82 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.82 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.8 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.79 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.75 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.75 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.73 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.72 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.71 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.71 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.71 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.7 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.7 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.69 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.69 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.66 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.65 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.61 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.61 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.6 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.58 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.55 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.53 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.53 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.51 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.49 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.48 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.48 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 97.47 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.45 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.45 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.43 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.41 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.39 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.35 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 97.33 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.28 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.27 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 97.17 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 97.14 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 97.14 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.1 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 97.07 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 97.07 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.04 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.03 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 96.99 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 96.93 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.91 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 96.89 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.86 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 96.86 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.85 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 96.83 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 96.81 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 96.7 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 96.69 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.62 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 96.61 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.53 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.43 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.31 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.05 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.01 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 95.82 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.73 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.68 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 95.42 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.2 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 94.96 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.9 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 94.63 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 94.58 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 94.05 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 93.96 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 93.92 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 93.67 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.61 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.61 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 93.57 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.49 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 93.37 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 93.35 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 93.35 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 93.34 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 93.25 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.24 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.22 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 93.18 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.04 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.02 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 93.01 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 93.01 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.0 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 92.97 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 92.96 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.93 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 92.91 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 92.8 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 92.78 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 92.72 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 92.72 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 92.65 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 92.61 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 92.51 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 92.43 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 92.42 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 92.4 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 92.08 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 92.08 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 92.05 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 92.03 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 91.99 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 91.98 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.91 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 91.86 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 91.77 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 91.73 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 91.73 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 91.72 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 91.71 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 91.69 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 91.68 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 91.63 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.62 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 91.59 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 91.46 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 91.38 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 91.3 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 91.25 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 91.22 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 91.18 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 91.17 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 91.09 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 91.06 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 91.04 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 90.96 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.94 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 90.93 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 90.9 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.87 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.87 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 90.85 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 90.79 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 90.78 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.78 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 90.78 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 90.74 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 90.68 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 90.63 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 90.61 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.44 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 90.27 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 90.2 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 90.14 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 90.08 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 90.07 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 90.06 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 89.93 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 89.91 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 89.9 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 89.82 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 89.78 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 89.76 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 89.75 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 89.74 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 89.62 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 89.61 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 89.53 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.46 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 89.39 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 89.28 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 89.26 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 89.2 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 89.19 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 89.17 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 89.14 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 89.12 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 89.1 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 89.03 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 88.92 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 88.83 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 88.71 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 88.65 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 88.57 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 88.47 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 88.46 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 88.41 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 88.4 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 88.39 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 88.36 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 88.34 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 88.28 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.27 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 88.26 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 88.24 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 88.24 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 88.14 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 88.01 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 88.0 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 87.97 |
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-79 Score=630.72 Aligned_cols=458 Identities=26% Similarity=0.378 Sum_probs=382.9
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC--------CCCCceeccccccchhhhhhhhHHHHHHHhhhhhC
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH 110 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~--------~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 110 (507)
+...+|||+||||||||+.||.+++++|.+|+|||+. ..+||+|+|+||+|+|.++...+.+.........+
T Consensus 38 ~~~ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~ 117 (542)
T 4b1b_A 38 EHTYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAY 117 (542)
T ss_dssp -CCSSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhc
Confidence 3445799999999999999999999999999999963 35899999999999999999888877766556678
Q ss_pred CcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccC--CceEEEEeCeEEEccCCCC
Q 010573 111 GVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIE--GGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 111 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~--g~~~~~~~d~lvlAtG~~p 188 (507)
|+......+||.++..+.+..++++...+...+++.+|+++.+.+.+++++++.|...+ +..+.+.+|++|||||++|
T Consensus 118 Gi~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P 197 (542)
T 4b1b_A 118 GWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRP 197 (542)
T ss_dssp TEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred CcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCC
Confidence 88888888999999999999999999888899999999999999999999999886543 3467899999999999999
Q ss_pred CCCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc
Q 010573 189 KSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (507)
Q Consensus 189 ~~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~ 268 (507)
..||........++++++++.+++.|++++|||+|++|+|+|..|+++|++||++++ +++++.+|+++.+.+.+.|++.
T Consensus 198 ~~P~~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~~ 276 (542)
T 4b1b_A 198 HIPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEEQ 276 (542)
T ss_dssp CCCSSSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTTSCHHHHHHHHHHHHHT
T ss_pred CCCCcccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccccchhHHHHHHHHHHhh
Confidence 877766655667889999999999999999999999999999999999999999986 5678999999999999999999
Q ss_pred CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCe-ecCCCCCCCCC
Q 010573 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRI-PVNERFATNIP 347 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i-~Vd~~~~t~~~ 347 (507)
||++++++.+++++..++.+.+.+. ++.++.+|.|++|+|++||++.|+++.+|+.++.+|++ .||+++|||+|
T Consensus 277 gi~~~~~~~v~~~~~~~~~~~v~~~-----~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p 351 (542)
T 4b1b_A 277 GVMFKNGILPKKLTKMDDKILVEFS-----DKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIP 351 (542)
T ss_dssp TCEEEETCCEEEEEEETTEEEEEET-----TSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSST
T ss_pred cceeecceEEEEEEecCCeEEEEEc-----CCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCC
Confidence 9999999999999998888888875 45678899999999999999999999999999876665 78999999999
Q ss_pred CeEEecCCCCC-CCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcc
Q 010573 348 GVYAIGDVIPG-PMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLAN 425 (507)
Q Consensus 348 ~IyA~GD~a~~-~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~ 425 (507)
+|||+|||+++ |++++.|.+||+++++|+++.. ...+|..+|+++|++|++++||+||++|++.+.++.+..+++...
T Consensus 352 ~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~~~~~~~ 431 (542)
T 4b1b_A 352 SIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFLQEFN 431 (542)
T ss_dssp TEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEEEEC---
T ss_pred CeEEeccccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEEEEeecc
Confidence 99999999965 7899999999999999999865 446899999999999999999999999999877655555444322
Q ss_pred cch-----------------hhcCCcceEEEEEE-ECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCC
Q 010573 426 SRA-----------------KAIDDAEGIVKILA-EKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHP 487 (507)
Q Consensus 426 ~~~-----------------~~~~~~~~~~k~~~-~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p 487 (507)
.++ ....+++||+|+++ ++++++|||+|++|++|.|+|+.+++||++++|++||++++++||
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~HP 511 (542)
T 4b1b_A 432 NLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHP 511 (542)
T ss_dssp --------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC-----
T ss_pred chhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccCCcCC
Confidence 221 12245679999986 557899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcc
Q 010573 488 TMSEALKEAAMATHD 502 (507)
Q Consensus 488 ~~~~~~~~~~~~~~~ 502 (507)
|++|+|.+++.++..
T Consensus 512 TlsE~l~~~~~t~~~ 526 (542)
T 4b1b_A 512 TDAESFMNLFVTISS 526 (542)
T ss_dssp ---------------
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999887643
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-78 Score=620.57 Aligned_cols=470 Identities=57% Similarity=0.941 Sum_probs=429.4
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCc
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 116 (507)
+.+++.+|||+||||||||++||..|++.|++|+|||+++.+||+|.+.+|+|++.+......+......+..+|+....
T Consensus 19 ~~~~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~ 98 (491)
T 3urh_A 19 YFQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVAN 98 (491)
T ss_dssp -------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCC
T ss_pred chhhcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCC
Confidence 44455569999999999999999999999999999999899999999999999999999888888777767788888777
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCc-
Q 010573 117 VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT- 195 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~- 195 (507)
..++|..+..+.+.....+...+...+++.+++++.+.+.+++++.+.+.+.+|+...+.||+||||||++|+.+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ipg~~~ 178 (491)
T 3urh_A 99 PKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEV 178 (491)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCBTTBCC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCCCCccc
Confidence 8899999999999999999888888999999999999999999999999988876678999999999999998888876
Q ss_pred -cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 010573 196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
.++..++++.+...+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~ 258 (491)
T 3urh_A 179 AFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKL 258 (491)
T ss_dssp CCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred ccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEE
Confidence 4566788999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecC
Q 010573 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354 (507)
Q Consensus 275 ~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD 354 (507)
++++++++.+++++.+.+.+..+|+.+++++|.||+|+|++|++++++++..|++++++|+|.||+++||++|+|||+||
T Consensus 259 ~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD 338 (491)
T 3urh_A 259 GAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGD 338 (491)
T ss_dssp SEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred CCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCCCCCEEEEEe
Confidence 99999999888888888765433445789999999999999999987778889999999999999999999999999999
Q ss_pred CCCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCc
Q 010573 355 VIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDA 434 (507)
Q Consensus 355 ~a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (507)
|++.|.+++.|..||+.||+||++...++++..+|+++|++|+++++|+||++|++.|+++.++.+++....++.+.+++
T Consensus 339 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 418 (491)
T 3urh_A 339 VVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPFTANGRARAMLQT 418 (491)
T ss_dssp GSSSCCCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEECSSSCEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCC
T ss_pred cCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCEEEEccCCeEEEeCCHHHHHhCCCCEEEEEEecCcchhhhcCCCC
Confidence 99999999999999999999999987778899999999999999999999999999999999999999999999988888
Q ss_pred ceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 435 EGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 435 ~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.+..+..|
T Consensus 419 ~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~ 490 (491)
T 3urh_A 419 DGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALSTFFKPIH 490 (491)
T ss_dssp CCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHC----
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHHhhhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999988776655
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-75 Score=602.02 Aligned_cols=463 Identities=49% Similarity=0.804 Sum_probs=426.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC------CCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS 115 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~------~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 115 (507)
.+|||+|||||+||++||.+|++.|++|+|||++. .+||+|.+.+|+|++.+......+......+..+|+...
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 35899999999999999999999999999999975 589999999999999999888888877776778888777
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCc
Q 010573 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT 195 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~ 195 (507)
....++..+..+.+.....+...+..++++.+++++.+.+.+++.+.+.+...+|+...+.||+||||||++|..+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~~~ 161 (476)
T 3lad_A 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAP 161 (476)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTTSC
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence 77899999999999999988888888888999999999999999999999887776678999999999999987667666
Q ss_pred cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
.+...++++.++..+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~ 241 (476)
T 3lad_A 162 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLG 241 (476)
T ss_dssp CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred CCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEEC
Confidence 56677889999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCC
Q 010573 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355 (507)
Q Consensus 276 ~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~ 355 (507)
+++++++.+++++.+.+.+.. + .+++++|.|++|+|++|+++.+.++..|++++++|+|.||+++||++|||||+|||
T Consensus 242 ~~v~~i~~~~~~~~v~~~~~~-g-~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~ 319 (476)
T 3lad_A 242 ARVTGTEVKNKQVTVKFVDAE-G-EKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDV 319 (476)
T ss_dssp CEEEEEEECSSCEEEEEESSS-E-EEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGG
T ss_pred CEEEEEEEcCCEEEEEEEeCC-C-cEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCCEEEEEcc
Confidence 999999988878887775321 1 26899999999999999998776888999999999999999999999999999999
Q ss_pred CCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcc
Q 010573 356 IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435 (507)
Q Consensus 356 a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (507)
++.|.+++.|..||+.||+||++...+.++..+|+++|++|+++++|+||++|++.|+++.++.+++....++.+.+++.
T Consensus 320 ~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 399 (476)
T 3lad_A 320 VRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTA 399 (476)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHCCCCCCTTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCC
T ss_pred CCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCCEEEECcCCEEEeeCCHHHHHhcCCCEEEEEEeccccchheecCCCc
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999888889
Q ss_pred eEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 436 ~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.+..++.|
T Consensus 400 ~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~ 470 (476)
T 3lad_A 400 GFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIH 470 (476)
T ss_dssp CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCCTT
T ss_pred EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998877665
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-73 Score=582.22 Aligned_cols=463 Identities=59% Similarity=0.960 Sum_probs=412.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCccc-CccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 121 (507)
+|||+|||||+||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+......+..+...+..+|+.. .....++
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS 81 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 489999999999999999999999999999998899999999999999988877776666554355667764 3456789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
..+..+.......+...+..++++.+++++.+++.+++.+.+.+.+.+|+...+.||+||+|||++|..++....+...+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~~~v 161 (468)
T 2qae_A 82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVV 161 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCcCce
Confidence 99999888888888888888888889999999988899999988877765578999999999999885443322233458
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHH-HhcCcEEEcCceEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL-EKQKMKFMLKTKVVG 280 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l-~~~Gv~i~~~~~v~~ 280 (507)
++++++..+...+++++|||+|++|+|+|..+.+.|.+|+++++.+++++.+|+++.+.+.+.+ ++.||+++++++|++
T Consensus 162 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~ 241 (468)
T 2qae_A 162 LSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVG 241 (468)
T ss_dssp ECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEE
T ss_pred echHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEE
Confidence 8889988888889999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC-CC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-GP 359 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~-~~ 359 (507)
++.+++++.+++.+ .+|+.+++++|.|++|+|++|+++++.++..|++++++|+|.||+++||+.|+|||+|||++ .+
T Consensus 242 i~~~~~~~~v~~~~-~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~ 320 (468)
T 2qae_A 242 GTNNGDSVSLEVEG-KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGP 320 (468)
T ss_dssp EEECSSSEEEEEEC-C---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGBSSSC
T ss_pred EEEcCCeEEEEEEc-CCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCCCCEEEeeccCCCCC
Confidence 98877667776642 12333689999999999999999876667889999888999999999999999999999999 88
Q ss_pred CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEE
Q 010573 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (507)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (507)
.+++.|.+||+.||.||++...++++..+|+++|++|+++++|++++++++.|+++.+..+++....++.+.+++.+|+|
T Consensus 321 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k 400 (468)
T 2qae_A 321 MLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVK 400 (468)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEE
T ss_pred ccHhHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEE
Confidence 99999999999999999987766778899999999999999999999999999999999999999999888888889999
Q ss_pred EEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 440 ILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 440 ~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
+++++++++|+|+|++|+++.|+|+.++.||++++|+++|.+++++|||++|++.++++.+..++.|
T Consensus 401 l~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 467 (468)
T 2qae_A 401 VLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMALFAKTIN 467 (468)
T ss_dssp EEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTHHHHHHHHHHHHSCCSC
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHHhccccc
Confidence 9999889999999999999999999999999999999999999999999999999999888777665
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-73 Score=583.63 Aligned_cols=464 Identities=60% Similarity=0.994 Sum_probs=412.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHH-hhhhhCCcccCccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM-HSFASHGVKFSSVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~ 121 (507)
+|||+||||||||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+......++.+. ..+..+|+......+++
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNL 85 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCH
Confidence 48999999999999999999999999999999889999999999999998887776665544 13456777655567889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
..+..+.+...+.+...+..++++.+++++.+.+.+++.+.+.+.+.+|+..++.||+||+|||++|..+|....+...+
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~~~~v 165 (474)
T 1zmd_A 86 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTI 165 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCCcCcE
Confidence 99999988888888888888888999999999988889888888877643467999999999999886444333334457
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
+++.++..+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ .+|+++.+.+.+.+++.||+++++++|++
T Consensus 166 ~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 245 (474)
T 1zmd_A 166 VSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTG 245 (474)
T ss_dssp ECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred EcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEE
Confidence 88888888877899999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred EEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCC
Q 010573 281 VDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (507)
Q Consensus 281 i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~ 359 (507)
++.++++ +.+++.+...++++++++|.|++|+|++|+++++.++.+|++++++|+|.||+++||+.|+|||+|||++.+
T Consensus 246 i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~ 325 (474)
T 1zmd_A 246 ATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325 (474)
T ss_dssp EEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBCSSTTEEECGGGSSSC
T ss_pred EEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCccCCCCEEEeeecCCCC
Confidence 9877665 777664333346678999999999999999987666788999988899999999999999999999999989
Q ss_pred CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEE
Q 010573 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (507)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (507)
.+++.|..||+.||.||++...+++|..+|+++|++|+++++|+++++++..|+++.+..+++....++.+.+++.+|+|
T Consensus 326 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k 405 (474)
T 1zmd_A 326 MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVK 405 (474)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEE
T ss_pred ccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEEEEecccchhhhhcCCCcEEEE
Confidence 99999999999999999987666788899999999999999999999999999999999999999999888888889999
Q ss_pred EEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHh-ccCCCC
Q 010573 440 ILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT-HDKPIH 506 (507)
Q Consensus 440 ~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~-~~~~~~ 506 (507)
+++++++++|+|+|++|+++.|+|+.++.+|++++|+++|.+++++|||++|++.++++.+ .+++.|
T Consensus 406 ~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~ 473 (474)
T 1zmd_A 406 ILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSIN 473 (474)
T ss_dssp EEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHHHHHHHHHHHHHSCCSC
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHHHhcCCcCC
Confidence 9999889999999999999999999999999999999999999999999999999999887 666655
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-73 Score=584.46 Aligned_cols=465 Identities=57% Similarity=0.939 Sum_probs=417.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCccc-CccccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-SSVEVD 120 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 120 (507)
.+|||+||||||||+++|..|++.|++|+|||+++.+||+|.+.+|+|++.+......+..+...+..+|+.. ....++
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 83 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKIN 83 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEEC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccC
Confidence 3589999999999999999999999999999998899999999999999999888877777765566677765 455678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEE------EEeCeEEEccCCCCCCCCCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTV------VKGKNIIIATGSDVKSLPGI 194 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~------~~~d~lvlAtG~~p~~~pg~ 194 (507)
+..+..+.......+...+...+++.+++++.+...+.+.+.+.+.+.+|+... +.||+||+|||++|+.+|+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~~~g~ 163 (478)
T 1v59_A 84 VANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGI 163 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCCCCCC
Confidence 899888888888888888888888899999999988888888888876663234 99999999999999878887
Q ss_pred ccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 010573 195 TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
...+..++++.++..+...+++++|||+|++|+|+|..|++.|.+||++++.+++++.+|+++.+.+.+.+++.||++++
T Consensus 164 ~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~ 243 (478)
T 1v59_A 164 EIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKL 243 (478)
T ss_dssp CCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence 65445688889988887789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEE--cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEe
Q 010573 275 KTKVVGVDL--SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (507)
Q Consensus 275 ~~~v~~i~~--~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~ 352 (507)
+++|++++. +++.+.+++.+..+++++++++|.|++|+|++|+++.+.++..|++++++|+|.||+++||+.|+|||+
T Consensus 244 ~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyA~ 323 (478)
T 1v59_A 244 STKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVV 323 (478)
T ss_dssp SEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEEC
T ss_pred CCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCCccCCCCEEEe
Confidence 999999987 566677776543345567899999999999999998544788899999889999999999999999999
Q ss_pred cCCCCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcC
Q 010573 353 GDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAID 432 (507)
Q Consensus 353 GD~a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (507)
|||++.+.+++.|..||+.||.||++...+++|..+|+++|++|+++++|+++++++..|+++.+..+++....++.+.+
T Consensus 324 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~ 403 (478)
T 1v59_A 324 GDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQ 403 (478)
T ss_dssp GGGSSSCCCHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTT
T ss_pred eccCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCCCEEEEEEecccchhhhhcC
Confidence 99999899999999999999999998766678899999999999999999999999999999999999999888888777
Q ss_pred CcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 433 DAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 433 ~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
++.+++|+++++++++|+|+|++|+++.++|+.++.+|++++|+++|.+++++|||++|++.+++..+.+++.|
T Consensus 404 ~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 477 (478)
T 1v59_A 404 DTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKAIH 477 (478)
T ss_dssp CCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCCSC
T ss_pred CCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHHHHHHHHHHHhcCcCC
Confidence 78899999999889999999999999999999999999999999999999999999999999999888777665
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-73 Score=584.74 Aligned_cols=463 Identities=42% Similarity=0.657 Sum_probs=410.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..+|||+|||||+||+++|..|++.|++|+|||+++.+||+|.+.+|+|++.++.....+..+. .+..+|+.......+
T Consensus 4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~-~~~~~gi~~~~~~~~ 82 (482)
T 1ojt_A 4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR-HLAANGIKYPEPELD 82 (482)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTCCCCCCCCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHH-HHHhCCcccCCCccC
Confidence 3458999999999999999999999999999999889999999999999998887776666553 355677776666788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCC----------ceEEEEeCeEEEccCCCCCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG----------GNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g----------~~~~~~~d~lvlAtG~~p~~ 190 (507)
+..+..+.......+...+..++++.+++++.+.+..++.+.+.+.+.+| +..++.||+||+|||++|..
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~ 162 (482)
T 1ojt_A 83 IDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTK 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCCC
Confidence 99999888888888888888888889999999988888888888765433 22579999999999999865
Q ss_pred CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCc
Q 010573 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 191 ~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
+|+.+.+. .++++.++..+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.+++.||
T Consensus 163 ~~~i~~~~-~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV 241 (482)
T 1ojt_A 163 LPFIPEDP-RIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFD 241 (482)
T ss_dssp CSSCCCCT-TEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEE
T ss_pred CCCCCccC-cEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHHHHhcCC
Confidence 55433222 57888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
+++++++|++++.+++++.+++.+. ++.++++++|.|++|+|++|+++++.++.+|++++++|+|.||+++||+.|+||
T Consensus 242 ~i~~~~~v~~i~~~~~~~~v~~~~~-~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iy 320 (482)
T 1ojt_A 242 NIMVNTKTVAVEPKEDGVYVTFEGA-NAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIY 320 (482)
T ss_dssp EEECSCEEEEEEEETTEEEEEEESS-SCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEE
T ss_pred EEEECCEEEEEEEcCCeEEEEEecc-CCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCcccCCCCEE
Confidence 9999999999988777777777521 111457899999999999999987667888999998899999999999999999
Q ss_pred EecCCCCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhh
Q 010573 351 AIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA 430 (507)
Q Consensus 351 A~GD~a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (507)
|+|||++.+.+++.|.+||++||.||++...++++..+|+++|++|+++++|+||++|+..|+++.++.+++....++.+
T Consensus 321 A~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~ 400 (482)
T 1ojt_A 321 AIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIA 400 (482)
T ss_dssp ECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHH
T ss_pred EEEcccCCCccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEEcCCCeEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhh
Confidence 99999998999999999999999999987766788889999999999999999999999999999999999998889888
Q ss_pred cCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 431 ~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
.+++.+|+|+++|+++++|+|+|++|+++.|+|+.++.||++++|++||.+++++|||++|.+.++++.+..++.|
T Consensus 401 ~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~~~~~~~~ 476 (482)
T 1ojt_A 401 NGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGTCTD 476 (482)
T ss_dssp TTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTCCTT
T ss_pred cCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHhccccc
Confidence 8888899999999889999999999999999999999999999999999999999999999999999887765544
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-73 Score=582.48 Aligned_cols=466 Identities=89% Similarity=1.320 Sum_probs=414.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
+.+|||+|||||+||+++|.+|++.|++|+|||+++.+||+|.+.+|+|++.+......+..+...+..+|+.......+
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 83 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEID 83 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEEC
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence 34689999999999999999999999999999998899999999999999988877776666554355567765555678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCce
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKR 200 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~ 200 (507)
+..+..+.......+...+..++++.+++++.+.+..++.+.+.+.+.+|+...+.||+||+|||++|..++....+...
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~~~ 163 (470)
T 1dxl_A 84 LAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKK 163 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCccc
Confidence 99998888888888877778888888999999988888888888877666446899999999999988644433323345
Q ss_pred EecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 201 IVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 201 ~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
+++..++..+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||++++++++++
T Consensus 164 v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 243 (470)
T 1dxl_A 164 IVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVG 243 (470)
T ss_dssp EECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred EEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 78888888887789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
++.+++++.+++.+..+++++++++|.|++|+|++|+++++.++.+|++++++|+|.||+++||+.|+|||+|||++.+.
T Consensus 244 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~ 323 (470)
T 1dxl_A 244 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM 323 (470)
T ss_dssp EECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC
T ss_pred EEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEEeccCCCCc
Confidence 98766667777653223445789999999999999999987678889999888999999999999999999999999889
Q ss_pred cHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEE
Q 010573 361 LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 440 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 440 (507)
+++.|.+||+.||.||++...+++|..+|+++|++|+++++|+++++++..|+++.+..+++....++.+.+++.+|+|+
T Consensus 324 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 403 (470)
T 1dxl_A 324 LAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKI 403 (470)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEE
T ss_pred cHHHHHHHHHHHHHHHcCCCcCCCCCCCCEEEECCCceEEEcCCHHHHHhcCCcEEEEEEecccchHHHhcCCCcEEEEE
Confidence 99999999999999999877667888999999999999999999999999999999999999988888888888899999
Q ss_pred EEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 441 LAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 441 ~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
++++++++|+|+|++|+++.|+|+.++.+|++++|+++|.+++++|||++|++.++++.+..++.|
T Consensus 404 ~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 469 (470)
T 1dxl_A 404 IAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIH 469 (470)
T ss_dssp EEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCCSC
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHHHhcCccc
Confidence 999889999999999999999999999999999999999999999999999999999888877665
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-72 Score=572.33 Aligned_cols=454 Identities=48% Similarity=0.777 Sum_probs=402.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+|||||+||++||.+|++.|++|+|||+++ +||+|.+.+|+|++.+......+..+. ....+|+. .....++.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~-~~~~~g~~-~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLK-VAEGFGLK-AKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHH-HHGGGTEE-CCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHH-hHHhcCCC-CCCCcCHH
Confidence 5899999999999999999999999999999966 999999999999998887776666554 34556765 45678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
.+..+.....+.+...+..++++.+++++.+++.+++.+.+.+. | .++.||+||||||++|..+|+++.+. .++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~---g--~~~~~d~lViATGs~p~~p~gi~~~~-~v~ 156 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVG---G--ERYGAKSLILATGSEPLELKGFPFGE-DVW 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET---T--EEEEEEEEEECCCEEECCBTTBCCSS-SEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEc---c--EEEEeCEEEEcCCCCCCCCCCCCCCC-cEE
Confidence 99998888888888778888888999999998888887766553 4 68999999999999987655444322 577
Q ss_pred cchhhccccC-CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 203 SSTGALALNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 203 ~~~~~~~~~~-~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
++.++..+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++++++
T Consensus 157 ~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i 236 (464)
T 2eq6_A 157 DSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGY 236 (464)
T ss_dssp CHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEE
T ss_pred cHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEE
Confidence 8888888877 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCc
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~ 361 (507)
+.+++++.+++.+..+|+..++++|.|++|+|++|++.++.++..|++++++|+|.||+++||+.|+|||+|||++.+.+
T Consensus 237 ~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~l 316 (464)
T 2eq6_A 237 EKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLL 316 (464)
T ss_dssp EEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTEEECGGGTCSSCC
T ss_pred EEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCEEEEeccCCCccc
Confidence 88777777776521113334899999999999999998765678889998889999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEE
Q 010573 362 AHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKIL 441 (507)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 441 (507)
++.|..||+.||.||++...++++. +|+++|++|+++++|+++++++..|+++.++.+++....++...+++.+|+|++
T Consensus 317 ~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~ 395 (464)
T 2eq6_A 317 AHKAMREGLIAAENAAGKDSAFDYQ-VPSVVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVV 395 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCC-CCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTSCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCC-CCeEEECCCCEEEEeCCHHHHHhcCCCEEEEEEEcCcchhhhhcCCCcEEEEEE
Confidence 9999999999999999876667788 999999999999999999999999999999999999888888887888999999
Q ss_pred EECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 442 AEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 442 ~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
+++++++|+|+|++|+++.|+|+.++.||++++|+++|.+++++|||++|.+.++++.+..++.|
T Consensus 396 ~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 460 (464)
T 2eq6_A 396 GDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAEAFHKQAIH 460 (464)
T ss_dssp EETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHHHHHHTTCCSS
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHHhcCccc
Confidence 99889999999999999999999999999999999999999999999999999999887766554
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-72 Score=574.20 Aligned_cols=459 Identities=38% Similarity=0.613 Sum_probs=406.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+||||||||+++|..|++.|++|+|||++ .+||.|.+.+|+|++.++.....+..+...+..+++. .....++.
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 80 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GEVTFDYG 80 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-ECCEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-CCCccCHH
Confidence 479999999999999999999999999999996 8999999999999998888777766665445556665 44567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
.+..+.......+...+.+.+++.+++++.+....++.+.+.+.+.+|+..++.||+||+|||++|..++....+.. ++
T Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~~-~~ 159 (464)
T 2a8x_A 81 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VV 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBTT-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCce-EE
Confidence 88888877777777777888888999999998877888888888776644689999999999998854433222223 78
Q ss_pred cchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 203 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
+..+...+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+|+++.+.+.+.+++.||++++++++++++
T Consensus 160 ~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 239 (464)
T 2a8x_A 160 TYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIA 239 (464)
T ss_dssp CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEE
T ss_pred ecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEE
Confidence 88888888778999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcH
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA 362 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~ 362 (507)
.+++++.+++. .+++.+++++|.|++|+|++|+++++.++.+|++++++|+|.||+++||+.|+|||+|||++.+.++
T Consensus 240 ~~~~~~~v~~~--~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~ 317 (464)
T 2a8x_A 240 DGGSQVTVTVT--KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLA 317 (464)
T ss_dssp ECSSCEEEEEE--SSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEEECGGGGCSSCSH
T ss_pred EcCCeEEEEEE--cCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEEEeECcCCCccCH
Confidence 77666777664 1234478999999999999999988666788999988899999999999999999999999989999
Q ss_pred hHHHHHHHHHHHHHcC-CCCC-CCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEE
Q 010573 363 HKAEEDGVACVEFLAG-KHGH-VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKI 440 (507)
Q Consensus 363 ~~A~~~g~~aa~~i~~-~~~~-~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 440 (507)
+.|.+||+.||.||++ ...+ ++|..+|+++|++|+++++|+++++++..|+++.+..+++....++.+.+++.+|+|+
T Consensus 318 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 397 (464)
T 2a8x_A 318 HVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKL 397 (464)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCCCEEEEEEEcchhhhhhhcCCCcEEEEE
Confidence 9999999999999998 5555 6678899999999999999999999999999999999999998898888888899999
Q ss_pred EEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 441 LAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 441 ~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
++|+++++|+|+|++|+++.|+|+.++.+|++++|+++|.+++++|||++|++.++++.+..++.|
T Consensus 398 ~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 463 (464)
T 2a8x_A 398 VADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFHGLVGHMIN 463 (464)
T ss_dssp EEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHHHHHHHHHHHSCCSC
T ss_pred EEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHHHHHHHHHHhccccc
Confidence 999889999999999999999999999999999999999999999999999999999888777665
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-72 Score=569.71 Aligned_cols=452 Identities=44% Similarity=0.728 Sum_probs=403.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.+......+..+. .+..+|+.......++.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 80 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAK-HSEEMGIKAENVTIDFA 80 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHH-TCGGGTEECCSCEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHH-HHHhcCcccCCCccCHH
Confidence 479999999999999999999999999999996 8999999999999998887776666554 34556776655678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
.+..+.......+...+...+++.+++++.+++.+++++.+.+.+.+| ...+.||+||+|||++|..++....+.. ++
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G-~~~i~~d~lViATGs~p~~~~~~g~~~~-v~ 158 (455)
T 1ebd_A 81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPIELPNFKFSNR-IL 158 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTE-EEEEECSEEEECCCEEECCBTTBCCCSS-EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCC-cEEEEeCEEEEecCCCCCCCCCCCccce-Ee
Confidence 998888888888888888888899999999998888888888877655 2579999999999998854433222222 78
Q ss_pred cchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 203 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
+..+...+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|++++
T Consensus 159 ~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~ 238 (455)
T 1ebd_A 159 DSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAE 238 (455)
T ss_dssp CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred cHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 88888887778999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcH
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA 362 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~ 362 (507)
.+++++.+++.. +++++++++|.|++|+|++|+++++.++..|++++++|+|.||+++||+.|+|||+|||++.+.++
T Consensus 239 ~~~~~~~v~~~~--~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~~~~~ 316 (455)
T 1ebd_A 239 EREDGVTVTYEA--NGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALA 316 (455)
T ss_dssp EETTEEEEEEEE--TTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCH
T ss_pred EeCCeEEEEEEe--CCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEEEeccCCCcccH
Confidence 877777777642 345678999999999999999988666788999988899999999999999999999999988999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEE
Q 010573 363 HKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILA 442 (507)
Q Consensus 363 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 442 (507)
+.|..||+.||.||++...+++|..+|+++|++|+++++|+++++++..|+++.+..+++....++.+.+++.+|+|+++
T Consensus 317 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 396 (455)
T 1ebd_A 317 HKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVV 396 (455)
T ss_dssp HHHHHHHHHHHHHHTSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEE
Confidence 99999999999999987666788899999999999999999999999999999999999999899888888889999999
Q ss_pred ECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHh
Q 010573 443 EKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT 500 (507)
Q Consensus 443 ~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 500 (507)
++++++|+|+|++|+++.|+|+.++.||++++|++||.+++++|||++|++.++++.+
T Consensus 397 ~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~ 454 (455)
T 1ebd_A 397 RKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA 454 (455)
T ss_dssp ETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHT
T ss_pred ECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHh
Confidence 9889999999999999999999999999999999999999999999999999998765
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-72 Score=574.35 Aligned_cols=454 Identities=25% Similarity=0.392 Sum_probs=400.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+||||||||++||.+|++.|++|+|||++ .+||+|.+.||+|++.+......+..... +..+|+......+++.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-~~GGtc~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~~~~~ 85 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-AYGTTCARVGCMPSKLLIAAADASYHASQ-TDLFGIQVDRISVNGK 85 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-CSSCHHHHHSHHHHHHHHHHHHHHHHHTC-GGGGTEECSEEEECHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCCCcccccChhcCHHHHHHHHHHHHHhh-hhhcCcCCCCCccCHH
Confidence 489999999999999999999999999999995 69999999999999999888877665544 4566776555678898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
.+..+.......+...+...+... +++++.+.+.+.+.+.+.+ .++ ..+.||+||||||++|..++........+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~--~~~--~~~~~d~lViATGs~p~~p~~~~~~~~~v 161 (492)
T 3ic9_A 86 AVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQV--DDH--SQVIAKRIVIATGSRPNYPEFLAAAGSRL 161 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEE--TTT--EEEEEEEEEECCCEECCCCHHHHTTGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEE--cCC--cEEEeCEEEEccCCCCcCCCCCCccCCcE
Confidence 888887777766655554444443 6788999999988887665 355 78999999999999987554333335678
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+++.+++.+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+|+++.+.+.+.+++. |++++++.++++
T Consensus 162 ~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i 240 (492)
T 3ic9_A 162 LTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVIST 240 (492)
T ss_dssp ECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEE
T ss_pred EcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEE
Confidence 8999999888889999999999999999999999999999999999999999999999999999988 999999999999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecC-CCCCCCCCCeEEecCCCCCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN-ERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd-~~~~t~~~~IyA~GD~a~~~~ 360 (507)
+.+++++.+++.+ .+|+.+++++|.|++|+|++|+++++.++.+|++++++|+|.|| +++||+.|+|||+|||++.++
T Consensus 241 ~~~~~~v~v~~~~-~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~ 319 (492)
T 3ic9_A 241 IEKEDAVEVIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLT 319 (492)
T ss_dssp EECSSSEEEEEEC-TTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSC
T ss_pred EEcCCEEEEEEEe-CCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCc
Confidence 9888788777642 23333789999999999999999988788999999999999999 999999999999999999999
Q ss_pred cHhHHHHHHHHHHHHHcCC--CCCCCCCCccEEEEcCCCeeeecCCHHHHHHcC-----CCEEEEEEecCcccchhhcCC
Q 010573 361 LAHKAEEDGVACVEFLAGK--HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELG-----VEYRVGKFPFLANSRAKAIDD 433 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~--~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 433 (507)
+++.|..||+.||.||++. ....++..+|+++|++|+++++|+||++|++.+ .++.+.++++....++.+.++
T Consensus 320 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~ 399 (492)
T 3ic9_A 320 LLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGK 399 (492)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEEeccchhhhhcCC
Confidence 9999999999999999973 234578889999999999999999999999883 789999999999999998888
Q ss_pred cceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCC
Q 010573 434 AEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKP 504 (507)
Q Consensus 434 ~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~ 504 (507)
+.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.+..+.
T Consensus 400 ~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~~ 470 (492)
T 3ic9_A 400 NKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALRDAQQKL 470 (492)
T ss_dssp CCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHHHHHHHHHHHHHTS
T ss_pred CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999998877654
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-71 Score=567.99 Aligned_cols=444 Identities=27% Similarity=0.478 Sum_probs=395.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
.|||+||||||||++||..|++.|++|+||||++.+||+|.+.+|+|++.+......+....+.. . ....+++.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~-~-----~~~~~~~~ 77 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIA-N-----VKIPLDFS 77 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHH-C-----SCCCCCHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcc-c-----CCCCcCHH
Confidence 58999999999999999999999999999998899999999999999999888877776654432 2 23467899
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccCC
Q 010573 123 AMMAQKDKAVSNLT--RGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDE 198 (507)
Q Consensus 123 ~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~~ 198 (507)
.+..+...... +. ..+..++++.+++++.+.+.+++++.+.|.+.+|+..++.||+||||||++|.. +||..
T Consensus 78 ~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~--- 153 (466)
T 3l8k_A 78 TVQDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVE--- 153 (466)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGG---
T ss_pred HHHHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCcc---
Confidence 99988888877 77 777788888999999999999999999998888744449999999999998854 44433
Q ss_pred ceEecchhhc----cccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCC-CHHHHHHHHHHHHhcCcEEE
Q 010573 199 KRIVSSTGAL----ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-DGEIRKQFQRSLEKQKMKFM 273 (507)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-d~~~~~~~~~~l~~~Gv~i~ 273 (507)
.+++..++. .+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+ ++++.+.+.+.++ |+++
T Consensus 154 -~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~ 229 (466)
T 3l8k_A 154 -YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIK 229 (466)
T ss_dssp -GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEE
T ss_pred -ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEE
Confidence 477888887 566678999999999999999999999999999999999999988 9999999988886 9999
Q ss_pred cCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEe
Q 010573 274 LKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (507)
Q Consensus 274 ~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~ 352 (507)
+++++++++.++ +++.+.+.+ .+|+..++++|.|++|+|++|++. +.++..|++++++| |.||+++||++|+|||+
T Consensus 230 ~~~~v~~i~~~~~~~v~v~~~~-~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~~~~t~~~~Iya~ 306 (466)
T 3l8k_A 230 FNSPVTEVKKIKDDEYEVIYST-KDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDETMKTNIPNVFAT 306 (466)
T ss_dssp CSCCEEEEEEEETTEEEEEECC-TTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCTTCBCSSTTEEEC
T ss_pred ECCEEEEEEEcCCCcEEEEEEe-cCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECCCccCCCCCEEEE
Confidence 999999998776 777777642 133445899999999999999998 65788999999989 99999999999999999
Q ss_pred cCCCCCCCcHhHHHHHHHHHHHHHcCC---CCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchh
Q 010573 353 GDVIPGPMLAHKAEEDGVACVEFLAGK---HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAK 429 (507)
Q Consensus 353 GD~a~~~~~~~~A~~~g~~aa~~i~~~---~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (507)
|||++.+++++.|..||+.||.||++. ....++..+|+++|++|+++++|+||++|+..|+++++..+++....++.
T Consensus 307 GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~ 386 (466)
T 3l8k_A 307 GDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQ 386 (466)
T ss_dssp GGGTCSCCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGSHHHH
T ss_pred EecCCCCccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhCCCCEEEEEEEcccChhhe
Confidence 999998999999999999999999975 34567889999999999999999999999999999999999999999988
Q ss_pred hcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccC
Q 010573 430 AIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDK 503 (507)
Q Consensus 430 ~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 503 (507)
..++++||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.+...
T Consensus 387 ~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~~ 460 (466)
T 3l8k_A 387 IYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTARKVIEG 460 (466)
T ss_dssp HHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHHHHHHHHHC-
T ss_pred ecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHHHHHHHHHhh
Confidence 88888999999999999999999999999999999999999999999999999999999999999999887553
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-71 Score=567.26 Aligned_cols=447 Identities=28% Similarity=0.474 Sum_probs=394.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
++.+|||+||||||||++||..|++.|++|+|||+ +.+||+|.+.+|+|++.+......+... .....+++......+
T Consensus 17 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~-~~~GG~~~~~gc~p~k~l~~~~~~~~~~-~~~~~~g~~~~~~~~ 94 (478)
T 3dk9_A 17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNVGCVPKKVMWNTAVHSEFM-HDHADYGFPSCEGKF 94 (478)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHH-TTTTTTTSCCCCCCC
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcccccCccchHHHHHHHHHHHHH-HHHHhcCccCCCCcc
Confidence 34468999999999999999999999999999997 5899999999999999988877766544 344667776666788
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCC-----CCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL-----PGI 194 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~-----pg~ 194 (507)
++..+..+.......+...+...++..+++++.+.+.+++.....+. .++ .++.||+||||||++|..+ ||.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~-~~g--~~~~~d~lviAtG~~p~~p~~~~i~G~ 171 (478)
T 3dk9_A 95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIE-VSG--KKYTAPHILIATGGMPSTPHESQIPGA 171 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEE-ETT--EEEECSCEEECCCEEECCCCTTTSTTG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEE-ECC--EEEEeeEEEEccCCCCCCCCcCCCCCC
Confidence 99999999999999888888888899999999999999888776666 345 6799999999999987543 443
Q ss_pred ccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 010573 195 TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
. .++++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.+++.||++++
T Consensus 172 ~----~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~ 247 (478)
T 3dk9_A 172 S----LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLK 247 (478)
T ss_dssp G----GSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEET
T ss_pred c----eeEchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence 2 456778888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEcCCe--EEEEEeecCCCc--eEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 275 KTKVVGVDLSGDG--VKLTLEPAAGGE--KTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 275 ~~~v~~i~~~~~~--v~v~~~~~~~g~--~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
++.+++++.++++ +.+.+.+...++ ++++++|.|++|+|++|++..+.++..|++++++|+|.||+++||++||||
T Consensus 248 ~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iy 327 (478)
T 3dk9_A 248 FSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIY 327 (478)
T ss_dssp TEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCSSTTEE
T ss_pred CCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccCCCCEE
Confidence 9999999876555 556654322222 378999999999999999987777889999999999999999999999999
Q ss_pred EecCCCCCCCcHhHHHHHHHHHHHHHcCC--CCCCCCCCccEEEEcCCCeeeecCCHHHHHHcC--CCEEEEEEecCccc
Q 010573 351 AIGDVIPGPMLAHKAEEDGVACVEFLAGK--HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELG--VEYRVGKFPFLANS 426 (507)
Q Consensus 351 A~GD~a~~~~~~~~A~~~g~~aa~~i~~~--~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~~~~~~~~~ 426 (507)
|+|||++.|.+++.|..||+.||+||++. ....+|..+|+++|++|+++++|+||++|++.+ .++.+.+.++....
T Consensus 328 A~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~ 407 (478)
T 3dk9_A 328 AVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMY 407 (478)
T ss_dssp ECGGGGCSSCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGG
T ss_pred EEEecCCCCccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEeeCCHHHHHhhCCCccEEEEEeecCcch
Confidence 99999999999999999999999999987 345688899999999999999999999999875 46777777888888
Q ss_pred chhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHH
Q 010573 427 RAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495 (507)
Q Consensus 427 ~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~ 495 (507)
++...+++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|+|..
T Consensus 408 ~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 476 (478)
T 3dk9_A 408 HAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT 476 (478)
T ss_dssp GGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGS
T ss_pred hhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHh
Confidence 888777889999999999999999999999999999999999999999999999999999999998753
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-70 Score=567.42 Aligned_cols=453 Identities=26% Similarity=0.449 Sum_probs=400.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc--cCcc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK--FSSV 117 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~--~~~~ 117 (507)
+|||+|||||+||++||.+|++. |++|+|||+++ +||+|.+.+|+|++.+......+..+. .+..+|+. ....
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~-~~~~~g~~~~~~~~ 79 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELR-RAPHLGFHIDFDDA 79 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHT-TTTTTTBC------
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHH-HHHhCCCccccCCC
Confidence 37999999999999999999999 99999999977 999999999999998887776665443 34556665 3445
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecC------CEEEEEccCCceEEEEeCeEEEccCCCCCCC
Q 010573 118 EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP------SEVSVDTIEGGNTVVKGKNIIIATGSDVKSL 191 (507)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~------~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~ 191 (507)
..++..+..+.+.....+...+.+++++.+++++.+.+.+++. +.+.+.+.+|+...+.||+||+|||++|..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~p 159 (499)
T 1xdi_A 80 KISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL 159 (499)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence 6789999999888888888888888899999999999888887 6677777666334799999999999988544
Q ss_pred CCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcE
Q 010573 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 192 pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
+....+...+++..+...+...+++++|||+|++|+|+|..+.+.|.+|+++++.+++++.+|+++.+.+.+.+++.||+
T Consensus 160 ~i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 239 (499)
T 1xdi_A 160 PSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVR 239 (499)
T ss_dssp GGGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCE
T ss_pred CCCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCE
Confidence 32222334578888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
++++++|++++.+++++.+++. +++++++|.||+|+|++|+++++.++.+|++++++|+|.||+++||+.|+|||
T Consensus 240 i~~~~~V~~i~~~~~~v~v~~~-----~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 314 (499)
T 1xdi_A 240 LFKNARAASVTRTGAGVLVTMT-----DGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYA 314 (499)
T ss_dssp EETTCCEEEEEECSSSEEEEET-----TSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEE
T ss_pred EEeCCEEEEEEEeCCEEEEEEC-----CCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCcccCCCCEEE
Confidence 9999999999887666666643 45689999999999999999887678889999988999999999999999999
Q ss_pred ecCCCCCCCcHhHHHHHHHHHHHHHcCC-CCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhh
Q 010573 352 IGDVIPGPMLAHKAEEDGVACVEFLAGK-HGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA 430 (507)
Q Consensus 352 ~GD~a~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (507)
+|||++.+.+++.|..||++||.||++. ...++|..+|+++|++|+++++|+++++++..|+++.+..+++....++.+
T Consensus 315 ~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~ 394 (499)
T 1xdi_A 315 AGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKM 394 (499)
T ss_dssp CSGGGTSCSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHH
T ss_pred EeccCCCcccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhCCCCEEEEEEecCcccceee
Confidence 9999999999999999999999999987 455678889999999999999999999999999999999999999999888
Q ss_pred cCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhcc
Q 010573 431 IDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHD 502 (507)
Q Consensus 431 ~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~ 502 (507)
.+++.+|+|+++++++++|+|++++|+++.|+|+.++.||++++|+++|.+++++|||++|++.++++.+..
T Consensus 395 ~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 466 (499)
T 1xdi_A 395 SEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLMA 466 (499)
T ss_dssp TTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHCC
T ss_pred cCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHHHHhc
Confidence 888889999999988999999999999999999999999999999999999999999999999999887654
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-71 Score=564.67 Aligned_cols=440 Identities=27% Similarity=0.451 Sum_probs=396.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+|||||++|++||.+|++.|++|+|||+ +.+||+|.+.+|+|++.+........... .+..+++......+++.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 82 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFE-DAAGFGWTVGESRFDWA 82 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTEEECCCEECHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHH-HHHhcCcccCCCCcCHH
Confidence 58999999999999999999999999999999 88999999999999999888777766554 35667777666788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC-C--CCCCccCCc
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK-S--LPGITIDEK 199 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~-~--~pg~~~~~~ 199 (507)
.+..+.......+...+..++++.+++++.+.+.+++...+.+. .++ ..+.||++|+|||++|. . +||..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~-~~~--~~~~~d~lviAtG~~p~~~p~i~G~~---- 155 (463)
T 4dna_A 83 KLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLL-ASG--KTVTAERIVIAVGGHPSPHDALPGHE---- 155 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEET-TTT--EEEEEEEEEECCCEEECCCTTSTTGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEe-cCC--eEEEeCEEEEecCCCcccCCCCCCcc----
Confidence 99999998888888888888888999999999999888766553 344 78999999999999876 3 33322
Q ss_pred eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 200 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
.++++.+++.+...+++++|||+|++|+|+|..+.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 235 (463)
T 4dna_A 156 LCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQ 235 (463)
T ss_dssp GCBCHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred ccccHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEE
Confidence 46778888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCe-EEEE-EeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 280 GVDLSGDG-VKLT-LEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 280 ~i~~~~~~-v~v~-~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
+++.++++ +.++ +. +++ +++|.|++|+|++|++.++.++..|++++++|+|.||+++||++|+|||+|||++
T Consensus 236 ~i~~~~~~~~~v~~~~-----~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~GD~~~ 309 (463)
T 4dna_A 236 SVSADADGRRVATTMK-----HGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTD 309 (463)
T ss_dssp EEEECTTSCEEEEESS-----SCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEECSGGGS
T ss_pred EEEEcCCCEEEEEEcC-----CCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEEEecCC
Confidence 99887555 4555 43 445 9999999999999999987778899999999999999999999999999999999
Q ss_pred CCCcHhHHHHHHHHHHHHHcCCCC-CCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcce
Q 010573 358 GPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEG 436 (507)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (507)
.+.+++.|..||+.||+||++... ..++..+|+++|++|+++++|+||++|++.|.++.+.++++....++...+++.+
T Consensus 310 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (463)
T 4dna_A 310 RVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKT 389 (463)
T ss_dssp SCCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHHSSEEEEEEEEECCTTHHHHCCCCCE
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHcCCCeEEEEEeccccchhhcCCCceE
Confidence 999999999999999999998643 3578899999999999999999999999999999999999999999888888899
Q ss_pred EEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 437 IVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 437 ~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+++
T Consensus 390 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 450 (463)
T 4dna_A 390 IMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMY 450 (463)
T ss_dssp EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGTCCC
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998765
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-70 Score=564.70 Aligned_cols=451 Identities=29% Similarity=0.425 Sum_probs=390.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEec--------CCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK--------RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK 113 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~--------~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 113 (507)
.+|||+||||||||++||.+|++.|++|+|||+ ...+||+|.+.+|+|++.+......+... .....+|+.
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~-~~~~~~g~~ 83 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMI-RDAHHYGWE 83 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHH-HHHHHTTCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHH-HHHHhcCcc
Confidence 458999999999999999999999999999997 46799999999999999887777665544 345677776
Q ss_pred cC-ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--
Q 010573 114 FS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS-- 190 (507)
Q Consensus 114 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~-- 190 (507)
.. ...++|..+..+.+..+..+...+...+++.+++++.+.+.+++++.+.+.+.+|+...+.||+||||||++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~ 163 (488)
T 3dgz_A 84 VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPT 163 (488)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCC
Confidence 65 467899999999999998888888888889999999999999999999998887766789999999999998854
Q ss_pred -CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcC
Q 010573 191 -LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK 269 (507)
Q Consensus 191 -~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~G 269 (507)
+||.. ...+++.+++.+...+++++|||+|++|+|+|..|.++|.+|+++++. .+++.+|+++.+.+.+.+++.|
T Consensus 164 ~i~G~~---~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~~g 239 (488)
T 3dgz_A 164 QVKGAL---EYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMESHG 239 (488)
T ss_dssp SCBTHH---HHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTT
T ss_pred CCCCcc---cccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-cccccCCHHHHHHHHHHHHHCC
Confidence 44432 235678888888888999999999999999999999999999999986 4788999999999999999999
Q ss_pred cEEEcCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceec-CCCCeecCCCCCCCCC
Q 010573 270 MKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGRIPVNERFATNIP 347 (507)
Q Consensus 270 v~i~~~~~v~~i~~~-~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~G~i~Vd~~~~t~~~ 347 (507)
|++++++.+++++.. ++.+.+++.+..+++..++++|.|++|+|++|+++++.++..|++++ ++|+|.||+++||++|
T Consensus 240 v~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~t~~~ 319 (488)
T 3dgz_A 240 TQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEATSVP 319 (488)
T ss_dssp CEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSBCSST
T ss_pred CEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCCccCCC
Confidence 999999999999874 44567777653334444689999999999999999877788999998 7899999999999999
Q ss_pred CeEEecCCC-CCCCcHhHHHHHHHHHHHHHcCCCC-CCCCCCccEEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecC
Q 010573 348 GVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFL 423 (507)
Q Consensus 348 ~IyA~GD~a-~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~-~~~~~~~~~~~ 423 (507)
||||+|||+ +.+.+++.|..||++||.||++... ..++..+|+++|++|+++++|+||++|++. + ..+.+...++.
T Consensus 320 ~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~ 399 (488)
T 3dgz_A 320 HIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYK 399 (488)
T ss_dssp TEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECC
T ss_pred CEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcEEEEEcccc
Confidence 999999998 6788999999999999999998653 357888999999999999999999999875 3 35777666665
Q ss_pred cccchhhc-CCcceEEEEEEE-CCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 424 ANSRAKAI-DDAEGIVKILAE-KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 424 ~~~~~~~~-~~~~~~~k~~~~-~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
...++... +++++|+|+++| +++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++..++
T Consensus 400 ~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 475 (488)
T 3dgz_A 400 PLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKLH 475 (488)
T ss_dssp CHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTHHHHTCC
T ss_pred chhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHH
Confidence 54443332 236899999999 589999999999999999999999999999999999999999999999998764
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-69 Score=555.76 Aligned_cols=449 Identities=32% Similarity=0.497 Sum_probs=393.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhC-CcccCcccc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH-GVKFSSVEV 119 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 119 (507)
+.++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.||+|++.++.....+..... .... |+.......
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~-~~~~~g~~~~~~~~ 79 (467)
T 1zk7_A 2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRE-SPFDGGIAATVPTI 79 (467)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHC-CTTTTTSCCCCCCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhh-hhhcCCccCCCCcc
Confidence 45689999999999999999999999999999996 89999999999999988777665544332 2223 454444567
Q ss_pred ChHHHHHHHHHHHHHHHH-HHHHHHHhC-CcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCc
Q 010573 120 DLPAMMAQKDKAVSNLTR-GIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~ 195 (507)
++..+..+.......+.. .+.+++++. +++++.+.+.+++.+.+.+.+.+|+...+.||+||||||++|.. +||..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~ 159 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLK 159 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTTT
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCCC
Confidence 788888777766665543 345667777 99999999989999999998877755789999999999998753 44443
Q ss_pred cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
...+++..++..+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ +++++.+.+.+.+++.||+++++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~ 236 (467)
T 1zk7_A 160 --ESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEH 236 (467)
T ss_dssp --TSCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETT
T ss_pred --cCceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcC
Confidence 345678888888888899999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCC
Q 010573 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355 (507)
Q Consensus 276 ~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~ 355 (507)
++|++++.+++.+.+.+. +.++++|.||+|+|++|++..+.++..|++++++|+|.||+++||+.|+|||+|||
T Consensus 237 ~~v~~i~~~~~~~~v~~~------~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~~iya~GD~ 310 (467)
T 1zk7_A 237 TQASQVAHMDGEFVLTTT------HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDC 310 (467)
T ss_dssp CCEEEEEEETTEEEEEET------TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECSTT
T ss_pred CEEEEEEEeCCEEEEEEC------CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCCCEEEEecc
Confidence 999999877766666652 35899999999999999998765678899998889999999999999999999999
Q ss_pred CCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcc
Q 010573 356 IPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAE 435 (507)
Q Consensus 356 a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (507)
++.+.+++.|..||+.||.||++.....++..+|++.|++|+++++|+++.+++..|+++.+..+++....++....++.
T Consensus 311 ~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 390 (467)
T 1zk7_A 311 TDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTR 390 (467)
T ss_dssp BSSCCCHHHHHHHHHHHHHHHTTCCCCCCCTTCEEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCC
T ss_pred CCCcccHHHHHHHHHHHHHHHcCCCcccCCCCCCEEEecCCceEEEecCHHHHHhcCCCeEEEEEecccchhhhhcCCCc
Confidence 99999999999999999999998765677888999999999999999999999999999999999998888887777788
Q ss_pred eEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHh
Q 010573 436 GIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT 500 (507)
Q Consensus 436 ~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 500 (507)
+|+|+++++++++|||+|++|+++.++|+.++.+|++++|+++|.+++++|||++|++.++++..
T Consensus 391 ~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~ 455 (467)
T 1zk7_A 391 GFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTF 455 (467)
T ss_dssp CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHHHHHHHTT
T ss_pred EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHH
Confidence 99999999889999999999999999999999999999999999999999999999999998754
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-70 Score=559.49 Aligned_cols=454 Identities=50% Similarity=0.845 Sum_probs=406.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+||||||||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+......+..+.. ..+|+.......++.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~--~~~g~~~~~~~~~~~ 78 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK--GLLGAKVKGVELDLP 78 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH--CCTTEEECCEEECHH
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh--hcCCcccCCCccCHH
Confidence 379999999999999999999999999999998899999999999999998887777666544 556776555678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
.+..+.....+.+...+..++++.+++++.+.+.+++++.+.+.+ +| ..+.||+||+|||++|..+|....+...++
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~-~g--~~~~~d~lviAtG~~p~~~~~~g~~~~~v~ 155 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEE-TG--EELEARYILIATGSAPLIPPWAQVDYERVV 155 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETT-TC--CEEEEEEEEECCCEEECCCTTBCCCSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEee-CC--EEEEecEEEECCCCCCCCCCCCCCCcCcEe
Confidence 999888888888887788888888999999988888888888876 55 679999999999998865544333344578
Q ss_pred cchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 203 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
+..++..+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|++++
T Consensus 156 ~~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~ 235 (455)
T 2yqu_A 156 TSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVV 235 (455)
T ss_dssp CHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred chHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 88888887778999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcH
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA 362 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~ 362 (507)
.+++++.+++. +++++++|.||+|+|++|++.++.++..|++++++|+|.||+++||+.|+|||+|||++.+.++
T Consensus 236 ~~~~~v~v~~~-----~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~ 310 (455)
T 2yqu_A 236 PEAKGARVELE-----GGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPMLA 310 (455)
T ss_dssp EETTEEEEEET-----TSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGSSSCCCH
T ss_pred EeCCEEEEEEC-----CCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCCCCccCH
Confidence 87777777664 4568999999999999999987666788999888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEE
Q 010573 363 HKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILA 442 (507)
Q Consensus 363 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 442 (507)
+.|..||+.||.||++....+++..+|++.|++|+++++|+++++++..|+++.+..+++....++...+++.+|+|+++
T Consensus 311 ~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 390 (455)
T 2yqu_A 311 HKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLA 390 (455)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEE
T ss_pred HHHHHhHHHHHHHHcCCCccCCCCCCCEEEEcCCceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhcCCCcEEEEEEE
Confidence 99999999999999987666677788999999999999999999999999999999999988888887777889999999
Q ss_pred ECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 443 EKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 443 ~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
++++++|+|++++|+.+.|+++.++++|++++|+++|.+++++|||++|++.++++.+..++.|
T Consensus 391 ~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 454 (455)
T 2yqu_A 391 HAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAALAAWERPIH 454 (455)
T ss_dssp ETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHHHHHSCCSC
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHHhcCccc
Confidence 9889999999999999999999999999999999999999999999999999999888777665
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-70 Score=565.63 Aligned_cols=455 Identities=27% Similarity=0.462 Sum_probs=390.7
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC--------CCCceeccccccchhhhhhhhHHHHHHHhhhhh
Q 010573 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG--------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS 109 (507)
Q Consensus 38 ~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~--------~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 109 (507)
+++...|||+||||||||++||.+|++.|++|+|||+++ .+||+|.+.||+|++.+......+... ..+..
T Consensus 27 ~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~-~~~~~ 105 (519)
T 3qfa_A 27 LPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQAL-QDSRN 105 (519)
T ss_dssp CCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred cCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHH-HHHHh
Confidence 445567999999999999999999999999999999854 799999999999999887776655543 44567
Q ss_pred CCcccCc-cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC
Q 010573 110 HGVKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 110 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
+|+.... ..++|..+..+.+.....+...+...++..+|+++.+.+.+++++.+.+...+|+..++.||+||||||++|
T Consensus 106 ~g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p 185 (519)
T 3qfa_A 106 YGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP 185 (519)
T ss_dssp TTBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence 7876643 578999999999999988888888888899999999999999999999988877556899999999999988
Q ss_pred CC--CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHH
Q 010573 189 KS--LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLE 266 (507)
Q Consensus 189 ~~--~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~ 266 (507)
.. +||. ...++++.+++.+...+++++|||+|++|+|+|..|.++|.+|+++++. .+++.+|+++.+.+.+.++
T Consensus 186 ~~p~i~G~---~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~ 261 (519)
T 3qfa_A 186 RYLGIPGD---KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHME 261 (519)
T ss_dssp CCCCCTTH---HHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCc---cCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccccCCHHHHHHHHHHHH
Confidence 54 3442 2346788888888888999999999999999999999999999999984 6889999999999999999
Q ss_pred hcCcEEEcCceEEEEEEcC----CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceec-CCCCeecCCC
Q 010573 267 KQKMKFMLKTKVVGVDLSG----DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMGRIPVNER 341 (507)
Q Consensus 267 ~~Gv~i~~~~~v~~i~~~~----~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~G~i~Vd~~ 341 (507)
+.||++++++.+++++..+ +.+.+++....++...++++|.|++|+|++|+++.+.++..|++++ ++|+|.||++
T Consensus 262 ~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~ 341 (519)
T 3qfa_A 262 EHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDE 341 (519)
T ss_dssp HTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTT
T ss_pred HCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCC
Confidence 9999999999888876532 4566665433222224689999999999999999877888999998 5799999999
Q ss_pred CCCCCCCeEEecCCC-CCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcC--CCEEE
Q 010573 342 FATNIPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELG--VEYRV 417 (507)
Q Consensus 342 ~~t~~~~IyA~GD~a-~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~--~~~~~ 417 (507)
+||++|||||+|||+ +.+.+++.|..||++||+||++.. ...++..+|+++|++|+++++|+||++|++.+ ..+.+
T Consensus 342 ~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~ 421 (519)
T 3qfa_A 342 EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEV 421 (519)
T ss_dssp SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGEEE
T ss_pred CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCCCEEE
Confidence 999999999999999 678899999999999999999764 34678899999999999999999999998762 35666
Q ss_pred EEEecCcccchhhcC-CcceEEEEEEEC-CCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHH
Q 010573 418 GKFPFLANSRAKAID-DAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495 (507)
Q Consensus 418 ~~~~~~~~~~~~~~~-~~~~~~k~~~~~-~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~ 495 (507)
.+.++....++.... .+++|+|+++|+ ++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++..
T Consensus 422 ~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~ 501 (519)
T 3qfa_A 422 YHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTT 501 (519)
T ss_dssp EEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGG
T ss_pred EEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHH
Confidence 666666555544433 467999999997 589999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 010573 496 AA 497 (507)
Q Consensus 496 ~~ 497 (507)
++
T Consensus 502 ~~ 503 (519)
T 3qfa_A 502 LS 503 (519)
T ss_dssp CC
T ss_pred HH
Confidence 65
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-70 Score=557.79 Aligned_cols=450 Identities=39% Similarity=0.657 Sum_probs=400.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhh---CCcccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFAS---HGVKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~ 119 (507)
+|||+||||||||++||.+|++.|++|+|||+ +.+||+|.+.+|+|++.++.....+..+. .+.. +|+......+
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~-~~~~~~~~g~~~~~~~~ 82 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQAS-RFTEPSPLGISVASPRL 82 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHH-HTTSCCTTCCCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHh-hcccccccCcccCCCcc
Confidence 48999999999999999999999999999999 78999999999999999888877776665 3444 6777666778
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~ 199 (507)
++..+..+....++.+...+..++++.+++++.+++.+++.+.+.+. + ..+.||+||||||++|..+|+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~--~---~~~~~d~lviATGs~p~~~~~~~~~~- 156 (458)
T 1lvl_A 83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD--G---QRIQCEHLLLATGSSSVELPMLPLGG- 156 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEET--T---EEEECSEEEECCCEEECCBTTBCCBT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEe--e---EEEEeCEEEEeCCCCCCCCCCCCccC-
Confidence 99999999999998888888888999999999998888887665552 2 67999999999999986555444333
Q ss_pred eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 200 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
.++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|+
T Consensus 157 ~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~ 236 (458)
T 1lvl_A 157 PVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVE 236 (458)
T ss_dssp TEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEE
T ss_pred cEecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEE
Confidence 57888888888778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~ 359 (507)
+++. +.+.++ . .+|+.+++++|.|++|+|++|+++++.++..|++++++ +|.||+++||+.|+|||+|||++.+
T Consensus 237 ~i~~--~~v~v~--~-~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~~Iya~GD~~~~~ 310 (458)
T 1lvl_A 237 GYEN--GCLLAN--D-GKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMHNVWAIGDVAGEP 310 (458)
T ss_dssp EEET--TEEEEE--C-SSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSSTTEEECGGGGCSS
T ss_pred EEEe--CCEEEE--E-CCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCCCEEEeeccCCCc
Confidence 9975 334443 1 22333689999999999999999876568889998877 8999999999999999999999999
Q ss_pred CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEE
Q 010573 360 MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVK 439 (507)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 439 (507)
.+++.|..||+.||.||++....+++..+|++.|++|+++++|+++++++..|+++.++.+++....++...+++.+|+|
T Consensus 311 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 390 (458)
T 1lvl_A 311 MLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVR 390 (458)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCCCSCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEE
T ss_pred ccHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchhhhhcCCCcEEEE
Confidence 99999999999999999987666778889999999999999999999999999999999999888888877777889999
Q ss_pred EEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 440 ILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 440 ~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
+++|+++++|+|++++|+++.|+|+.++.+|++++|+++|.+++++|||++|.+.++++.+..++.|
T Consensus 391 l~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~~~~~~~~ 457 (458)
T 1lvl_A 391 VVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALH 457 (458)
T ss_dssp EEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCCSC
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHHHhccccc
Confidence 9999889999999999999999999999999999999999999999999999999999888777665
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-70 Score=563.21 Aligned_cols=448 Identities=28% Similarity=0.475 Sum_probs=393.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHH-CCCcEEEEe--------cCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASH 110 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie--------~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 110 (507)
|..+|||+||||||||++||.+|++ .|++|+||| +.+.+||+|.+.+|+|++.+......+..+. ....+
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~-~~~~~ 82 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLR-ESAGF 82 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHH-HHHTT
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHh-HHHhc
Confidence 3446899999999999999999999 999999999 3578999999999999999887777666554 35566
Q ss_pred CcccCcc--ccChHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEecCCEEEEEccCC----ceEEEEeCeEEEc
Q 010573 111 GVKFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEG----GNTVVKGKNIIIA 183 (507)
Q Consensus 111 g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g----~~~~~~~d~lvlA 183 (507)
|+..... .++|..+..+.......+...+...+++. +|+++.+.+.+++.+.+.+...++ ....+.||+||||
T Consensus 83 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViA 162 (495)
T 2wpf_A 83 GWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLA 162 (495)
T ss_dssp TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEEC
T ss_pred CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEe
Confidence 7765544 68999999999998888888888888888 999999999888888777652111 0368999999999
Q ss_pred cCCCCCC--CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhc---CCeeEEEcccCccCCCCCHHHH
Q 010573 184 TGSDVKS--LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIR 258 (507)
Q Consensus 184 tG~~p~~--~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~d~~~~ 258 (507)
||++|.. +||. ..++++++++.+...+++++|||+|++|+|+|..|.++ |.+|+++++.+++++.+|+++.
T Consensus 163 TGs~p~~p~i~G~----~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~ 238 (495)
T 2wpf_A 163 TGSWPQMPAIPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIR 238 (495)
T ss_dssp CCEEECCCCCTTG----GGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHHH
T ss_pred CCCCcCCCCCCCc----cccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHHH
Confidence 9998854 3443 23677888888888899999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhcCcEEEcCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCee
Q 010573 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIP 337 (507)
Q Consensus 259 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~ 337 (507)
+.+.+.+++.||+++++++|++++.+++ .+.+++. +++++++|.||+|+|++|+++.+.++.+|++++++|+|.
T Consensus 239 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~-----~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~ 313 (495)
T 2wpf_A 239 EEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFE-----SGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQ 313 (495)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEET-----TSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBC
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEEC-----CCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEE
Confidence 9999999999999999999999987654 3666664 445899999999999999998665788899999889999
Q ss_pred cCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEE
Q 010573 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416 (507)
Q Consensus 338 Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~ 416 (507)
||+++||+.|+|||+|||++.+.+++.|.+||++||.||++.. ...+|..+|+++|++|+++++|+++++++..+.++.
T Consensus 314 Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~ 393 (495)
T 2wpf_A 314 VDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVA 393 (495)
T ss_dssp CCTTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHHHHHHSSEEE
T ss_pred ECCCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEE
Confidence 9999999999999999999888899999999999999999853 446788999999999999999999999998887888
Q ss_pred EEEEecCcccchhhcCCcceE-EEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHH
Q 010573 417 VGKFPFLANSRAKAIDDAEGI-VKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495 (507)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~ 495 (507)
+.+.++....++....++.+| +|+++++++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+
T Consensus 394 v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 473 (495)
T 2wpf_A 394 VYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCS 473 (495)
T ss_dssp EEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGS
T ss_pred EEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHH
Confidence 888888888887776678899 9999999999999999999999999999999999999999999999999999999876
Q ss_pred HH
Q 010573 496 AA 497 (507)
Q Consensus 496 ~~ 497 (507)
++
T Consensus 474 ~~ 475 (495)
T 2wpf_A 474 MR 475 (495)
T ss_dssp CC
T ss_pred HH
Confidence 54
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-70 Score=560.08 Aligned_cols=450 Identities=29% Similarity=0.490 Sum_probs=387.7
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCccc--
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF-- 114 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~-- 114 (507)
|..++.+|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.+......+.... ....+++..
T Consensus 5 m~~~~~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~-~~~~~g~~~~~ 82 (479)
T 2hqm_A 5 MSTNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVS-HANEYGLYQNL 82 (479)
T ss_dssp -----CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHT-TTTTTTBSTTS
T ss_pred ccCccccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHH-hHHhcCccccc
Confidence 333445689999999999999999999999999999996 7999999999999998876665544443 234455543
Q ss_pred ---C-ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 115 ---S-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 115 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
. ...++|..+..+.+.....+...+...+++.+++++.+.+.+++++.+.+.+.+|+...+.||+||||||++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~ 162 (479)
T 2hqm_A 83 PLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIF 162 (479)
T ss_dssp CCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECC
T ss_pred ccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC
Confidence 2 346789999988888888888888888889999999999888998888888777744589999999999998853
Q ss_pred ---CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh
Q 010573 191 ---LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267 (507)
Q Consensus 191 ---~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~ 267 (507)
+|+. ..++++++++.+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+|+++.+.+.+.+++
T Consensus 163 p~~i~g~----~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~ 238 (479)
T 2hqm_A 163 PENIPGF----ELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYVK 238 (479)
T ss_dssp CTTSTTG----GGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCc----ccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHHh
Confidence 3443 235677788888888999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEcCceEEEEEEcCCe--EEEEEeecCCCce-EEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCC
Q 010573 268 QKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEK-TILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~g~~-~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t 344 (507)
.||+++++++|++++.++++ +.+++. ++ +++++|.||+|+|++|++ .+.++..|++++++|+|.||+++||
T Consensus 239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~-----~G~~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~~~G~i~vd~~~~t 312 (479)
T 2hqm_A 239 EGINVHKLSKIVKVEKNVETDKLKIHMN-----DSKSIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIADEYQNT 312 (479)
T ss_dssp HTCEEECSCCEEEEEECC-CCCEEEEET-----TSCEEEEESEEEECSCEEECC-CSSGGGGTCCBCTTSCBCCCTTCBC
T ss_pred CCeEEEeCCEEEEEEEcCCCcEEEEEEC-----CCcEEEEcCEEEECCCCCCcc-ccChhhcCceECCCCCEeECCCCcc
Confidence 99999999999999876544 566664 34 689999999999999999 4446788999998899999999999
Q ss_pred CCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC----CCCCCCCccEEEEcCCCeeeecCCHHHHHHc-C-CCEEEE
Q 010573 345 NIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH----GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVG 418 (507)
Q Consensus 345 ~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~----~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~-~~~~~~ 418 (507)
+.|+|||+|||++.+.+++.|.+||+.||.||++.. ...+|..+|+++|++|+++++|+++.+++.. + .++.+.
T Consensus 313 ~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~~~~~~~~~ 392 (479)
T 2hqm_A 313 NVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVY 392 (479)
T ss_dssp SSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEE
T ss_pred CCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcCCCCcEEEE
Confidence 999999999999888899999999999999999753 3457778999999999999999999999877 4 348888
Q ss_pred EEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHH
Q 010573 419 KFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAM 498 (507)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~ 498 (507)
.+++....++...+++.+|+|+++++++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+++.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 472 (479)
T 2hqm_A 393 NSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELVTMRG 472 (479)
T ss_dssp EEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC-
T ss_pred EEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHH
Confidence 88888888887667788999999999999999999999999999999999999999999999999999999999876653
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-70 Score=563.12 Aligned_cols=442 Identities=25% Similarity=0.434 Sum_probs=399.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||+|||||+||++||.+|++.|++|+|||+ +.+||.|.+.+|+|++.+......+.... ....+|+......+++
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~-~~~~~g~~~~~~~~~~ 102 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFS-KSIGFGWKYADPIFNW 102 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHH-HHGGGTBCCCCCEECH
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHH-HHHhCCcccCCCccCH
Confidence 368999999999999999999999999999999 78999999999999999888877766554 3567787766678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC-CC--CCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK-SL--PGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~-~~--pg~~~~~ 198 (507)
..+..+.......+...+...+++.+++++.+.+.+++...+.+. .++ ..+.||++|+|||+.|. .+ |+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~-~~~--~~~~~d~lviAtG~~p~~~p~i~G~~--- 176 (484)
T 3o0h_A 103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELS-VTG--ERISAEKILIATGAKIVSNSAIKGSD--- 176 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEET-TTC--CEEEEEEEEECCCEEECCC--CBTGG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEe-cCC--eEEEeCEEEEccCCCcccCCCCCCcc---
Confidence 999999999999998888889999999999999999988876664 244 67999999999999876 33 3322
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
.++++.+++.+...+++++|||+|++|+|+|..+.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|
T Consensus 177 -~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V 255 (484)
T 3o0h_A 177 -LCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATV 255 (484)
T ss_dssp -GSBCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCE
T ss_pred -ccccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 4677788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~ 358 (507)
++++.+++++.+++. +++++++|.||+|+|++|++.++.++..|++++++|+|.||+++||++|+|||+|||++.
T Consensus 256 ~~i~~~~~~v~v~~~-----~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~~ 330 (484)
T 3o0h_A 256 SQVQSTENCYNVVLT-----NGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGH 330 (484)
T ss_dssp EEEEECSSSEEEEET-----TSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGTS
T ss_pred EEEEeeCCEEEEEEC-----CCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEEecCCC
Confidence 999988777777764 456899999999999999999877788899999999999999999999999999999998
Q ss_pred CCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceE
Q 010573 359 PMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGI 437 (507)
Q Consensus 359 ~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (507)
+.+++.|..||+.||.||++.. ...++..+|+++|++|+++++|+||++|++.|.++.+..+++....++...+++.++
T Consensus 331 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (484)
T 3o0h_A 331 IQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMF 410 (484)
T ss_dssp CCCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHTCCCCEE
T ss_pred CcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHcCCCEEEEEecCCcchhhccCCCCcEE
Confidence 9999999999999999999864 346788999999999999999999999999999999999999988888888888999
Q ss_pred EEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 438 VKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 438 ~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|+|..++
T Consensus 411 ~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 470 (484)
T 3o0h_A 411 MKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMY 470 (484)
T ss_dssp EEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGCCC
T ss_pred EEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998765
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-70 Score=559.53 Aligned_cols=445 Identities=28% Similarity=0.443 Sum_probs=392.5
Q ss_pred CCcEEEECCChHHHHHHHHHHH-CCCcEEEEe--------cCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIE--------KRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK 113 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie--------~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 113 (507)
+|||+||||||||++||.+|++ .|++|+||| +.+.+||+|.+.+|+|++.+......+..+. ....+|+.
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~-~~~~~g~~ 81 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIR-ESAGFGWE 81 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTEE
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHH-HHHhcCcc
Confidence 5899999999999999999999 999999999 3578999999999999999888777766554 34566765
Q ss_pred cCcc--ccChHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEecCCEEEEEc---cCCc-eEEEEeCeEEEccCC
Q 010573 114 FSSV--EVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDT---IEGG-NTVVKGKNIIIATGS 186 (507)
Q Consensus 114 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~---~~g~-~~~~~~d~lvlAtG~ 186 (507)
.... .++|..+..+.+.....+...+...+++. +|+++.+.+.+++++.+.+.. .+|+ ...+.||+||||||+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs 161 (490)
T 1fec_A 82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGS 161 (490)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCC
Confidence 5444 68999999999999888888888888888 999999999899988777764 2342 267999999999999
Q ss_pred CCCCC--CCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhc---CCeeEEEcccCccCCCCCHHHHHHH
Q 010573 187 DVKSL--PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQF 261 (507)
Q Consensus 187 ~p~~~--pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~d~~~~~~~ 261 (507)
+|..+ |+. ..++++++++.+...+++++|||+|++|+|+|..|.++ |.+|+++++.+++++.+|+++.+.+
T Consensus 162 ~p~~p~i~g~----~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~~~l 237 (490)
T 1fec_A 162 WPQHLGIEGD----DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQL 237 (490)
T ss_dssp EECCCCSBTG----GGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHH
T ss_pred CCCCCCCCCc----cceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHHHHH
Confidence 88543 333 24678888888888899999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhcCcEEEcCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCC
Q 010573 262 QRSLEKQKMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNE 340 (507)
Q Consensus 262 ~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~ 340 (507)
.+.+++.||+++++++|++++.+++ .+.+++. +++++++|.||+|+|++|+++.|.++.+|++++++|+|.||+
T Consensus 238 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~-----~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~ 312 (490)
T 1fec_A 238 TEQLRANGINVRTHENPAKVTKNADGTRHVVFE-----SGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDA 312 (490)
T ss_dssp HHHHHHTTEEEEETCCEEEEEECTTSCEEEEET-----TSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCT
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEC-----CCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECC
Confidence 9999999999999999999987654 4666664 445899999999999999998665788899999889999999
Q ss_pred CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEE
Q 010573 341 RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419 (507)
Q Consensus 341 ~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~ 419 (507)
++||+.|+|||+|||++.+.+++.|.+||+.||.||++.. ...+|..+|+++|++|+++++|+++++++..+.++.+.+
T Consensus 313 ~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~~~~~~~~ 392 (490)
T 1fec_A 313 YSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYE 392 (490)
T ss_dssp TCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEE
T ss_pred CCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHHHHhcCCCEEEEE
Confidence 9999999999999999888899999999999999999853 446788899999999999999999999988887888888
Q ss_pred EecCcccchhhcCCcceEE-EEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 420 FPFLANSRAKAIDDAEGIV-KILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~-k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
.++....++....++.+|+ |+++++++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 471 (490)
T 1fec_A 393 SSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR 471 (490)
T ss_dssp EEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred eecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHH
Confidence 8888877777666788999 99999999999999999999999999999999999999999999999999999987654
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-70 Score=557.07 Aligned_cols=439 Identities=29% Similarity=0.502 Sum_probs=386.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.+......+..+......+++......+++
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNW 81 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECH
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence 4589999999999999999999999999999996 899999999999999888777666555423455666555567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccCCc
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDEK 199 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~~~ 199 (507)
..+..+.+.....+...+...+++.+++++.+++.+++.+.+.+ ++ ..+.||+||||||++|.. +||. .
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~---~g--~~~~~d~lviAtGs~p~~p~i~g~----~ 152 (450)
T 1ges_A 82 ETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NG--ETITADHILIATGGRPSHPDIPGV----E 152 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TT--EEEEEEEEEECCCEEECCCCSTTG----G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEE---CC--EEEEeCEEEECCCCCCCCCCCCCc----c
Confidence 99999988888888888888888999999999888888876555 45 689999999999998853 3443 2
Q ss_pred eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 200 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
.+++++++..+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~ 232 (450)
T 1ges_A 153 YGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPK 232 (450)
T ss_dssp GSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEE
T ss_pred ceecHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 35677888777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC
Q 010573 280 GVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (507)
Q Consensus 280 ~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~ 358 (507)
+++.++++ +.+++. +++++++|.|++|+|++|+++.+.++.+|++++++|+|.||+++||+.|+|||+|||++.
T Consensus 233 ~i~~~~~~~~~v~~~-----~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~ 307 (450)
T 1ges_A 233 AVVKNTDGSLTLELE-----DGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGA 307 (450)
T ss_dssp EEEECTTSCEEEEET-----TSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTS
T ss_pred EEEEeCCcEEEEEEC-----CCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEeccCCC
Confidence 99876543 666664 445899999999999999998665678899999889999999999999999999999988
Q ss_pred CCcHhHHHHHHHHHHHHHcCCC-CC-CCCCCccEEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecCcccchhhcCCc
Q 010573 359 PMLAHKAEEDGVACVEFLAGKH-GH-VDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAKAIDDA 434 (507)
Q Consensus 359 ~~~~~~A~~~g~~aa~~i~~~~-~~-~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 434 (507)
+.+++.|.+||+.||.||++.. .. .+|..+|+++|++|+++++|+++++++.. | .++.+...++....++...+++
T Consensus 308 ~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 387 (450)
T 1ges_A 308 VELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQ 387 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCC
T ss_pred CccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEEEEECchhhHHHhcCCC
Confidence 8899999999999999999854 33 57888999999999999999999999887 5 6788888888888887766677
Q ss_pred ceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHH
Q 010573 435 EGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495 (507)
Q Consensus 435 ~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~ 495 (507)
.+|+|+++++++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+
T Consensus 388 ~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 448 (450)
T 1ges_A 388 PCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT 448 (450)
T ss_dssp EEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHHHh
Confidence 8999999999999999999999999999999999999999999999999999999998754
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-69 Score=555.13 Aligned_cols=450 Identities=28% Similarity=0.436 Sum_probs=388.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC-------C--CCCceeccccccchhhhhhhhHHHHHHHhhhhhCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-------G--ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHG 111 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-------~--~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 111 (507)
...|||+||||||||++||.+|++.|++|+|||+. . .+||+|.+.+|+|++.+......+.... ....+|
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~-~~~~~g 85 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVH-EAAAYG 85 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHH-HHHhcC
Confidence 34699999999999999999999999999999942 1 3899999999999998877776655443 356677
Q ss_pred cccCc-cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 112 VKFSS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 112 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
+.... ..++|..+..+.....+.+...+...++..+++++.+.+.+++++.+.+.+.+|+ ..+.||+||||||++|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~-~~~~~d~lviATGs~p~~ 164 (483)
T 3dgh_A 86 WNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGE-RTITAQTFVIAVGGRPRY 164 (483)
T ss_dssp BCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCC-EEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCe-EEEEcCEEEEeCCCCcCC
Confidence 76643 5789999999999998888888888888999999999999999999999887774 679999999999998853
Q ss_pred --CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc
Q 010573 191 --LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (507)
Q Consensus 191 --~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~ 268 (507)
+||.. ...+++++++.+...+++++|||+|++|+|+|..|.++|.+|+++++ +.+++.+|+++.+.+.+.+++.
T Consensus 165 p~i~G~~---~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~~ 240 (483)
T 3dgh_A 165 PDIPGAV---EYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEER 240 (483)
T ss_dssp CSSTTHH---HHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-SCSSTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCcc---cccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC-CCCCcccCHHHHHHHHHHHHhC
Confidence 44432 23467888888888899999999999999999999999999999988 5678899999999999999999
Q ss_pred CcEEEcCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCC
Q 010573 269 KMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP 347 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~ 347 (507)
||++++++.+++++.+++ .+.+++.+..+++..++++|.|++|+|++|+++++.++..|+++++ |+|.||+++||++|
T Consensus 241 Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~t~~~ 319 (483)
T 3dgh_A 241 GIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEATNVA 319 (483)
T ss_dssp TCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCBCSST
T ss_pred CCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCCccCCC
Confidence 999999999999987544 4677776654455668999999999999999998777889999998 99999999999999
Q ss_pred CeEEecCCC-CCCCcHhHHHHHHHHHHHHHcCCCC-CCCCCCccEEEEcCCCeeeecCCHHHHHHc-C-CCEEEEEEecC
Q 010573 348 GVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKHG-HVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEYRVGKFPFL 423 (507)
Q Consensus 348 ~IyA~GD~a-~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~-~~~~~~~~~~~ 423 (507)
+|||+|||+ +.|.+++.|..||+.||+||++... ..+|..+|+++|++|+++++|+||++|++. + ..+.+...++.
T Consensus 320 ~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~~ 399 (483)
T 3dgh_A 320 NIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYK 399 (483)
T ss_dssp TEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEEEEECC
T ss_pred CEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCCCCEEEEEEeec
Confidence 999999998 6688999999999999999998653 467889999999999999999999999875 3 35666665665
Q ss_pred cccchhh-cCCcceEEEEEEECC-CCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 424 ANSRAKA-IDDAEGIVKILAEKE-TDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 424 ~~~~~~~-~~~~~~~~k~~~~~~-~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
...++.. ...+.+|+|+++|++ +++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++..++
T Consensus 400 ~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 475 (483)
T 3dgh_A 400 PTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRLA 475 (483)
T ss_dssp CGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGGCC
T ss_pred chhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence 5443322 234679999999986 8999999999999999999999999999999999999999999999987654
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-69 Score=551.85 Aligned_cols=441 Identities=31% Similarity=0.534 Sum_probs=387.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
+.+|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.+......+.... ....+++.......+
T Consensus 2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~-~~~~~g~~~~~~~~~ 79 (463)
T 2r9z_A 2 TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVR-DAPGFGVQASGGTLD 79 (463)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTBCCC---CC
T ss_pred CccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHh-hhhhcCcccCCCCcC
Confidence 34689999999999999999999999999999996 8999999999999998877776665544 345566665556788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDE 198 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~~ 198 (507)
+..+..+.......+...+...+++.+++++.+.+.+++.+.+.+ +| ..+.||+||||||++|.. +||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~---~g--~~~~~d~lviAtGs~p~~p~i~G~---- 150 (463)
T 2r9z_A 80 WPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEV---EG--QRLSADHIVIATGGRPIVPRLPGA---- 150 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEE---TT--EEEEEEEEEECCCEEECCCSCTTG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEE---CC--EEEEcCEEEECCCCCCCCCCCCCc----
Confidence 999999998888888888888888999999999888888876655 55 679999999999998853 3443
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..+++++++..+...+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+++++++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v 230 (463)
T 2r9z_A 151 ELGITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAV 230 (463)
T ss_dssp GGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCE
T ss_pred cceecHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 23567778877777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceE-EEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~-~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
++++.+++++.+++. +++ ++++|.|++|+|++|+++.+.++.+|++++++|+|.||+++||+.|+|||+|||++
T Consensus 231 ~~i~~~~~~~~v~~~-----~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~GD~~~ 305 (463)
T 2r9z_A 231 AALERDAQGTTLVAQ-----DGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALGDITG 305 (463)
T ss_dssp EEEEEETTEEEEEET-----TCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECGGGGT
T ss_pred EEEEEeCCeEEEEEe-----CCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEeecCC
Confidence 999877667777764 445 79999999999999999866567789999988999999999999999999999998
Q ss_pred CCCcHhHHHHHHHHHHHHHcCCC-CC-CCCCCccEEEEcCCCeeeecCCHHHHHHc-CCCEEEEEEecCcccchhhcCCc
Q 010573 358 GPMLAHKAEEDGVACVEFLAGKH-GH-VDYDKVPGVVYTHPEVASVGKTEEQVKEL-GVEYRVGKFPFLANSRAKAIDDA 434 (507)
Q Consensus 358 ~~~~~~~A~~~g~~aa~~i~~~~-~~-~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 434 (507)
.+.+++.|.+||+.+|.||++.. .. .+|..+|+++|++|+++++|+++++++.. |.++.+...++....++...+.+
T Consensus 306 ~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 385 (463)
T 2r9z_A 306 RDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGP 385 (463)
T ss_dssp SCCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCSCEEEEEEEECCGGGTTSSSCC
T ss_pred CcccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCCCCEEEEEEEcccchhhhhcCCC
Confidence 88899999999999999999854 23 57888999999999999999999999886 67888888888888887766678
Q ss_pred ceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 435 EGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 435 ~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
.+|+|+++++++++|+|+|++|+++.|+|+.+++||+.++|++||.+++++|||++|++.+++
T Consensus 386 ~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (463)
T 2r9z_A 386 KTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLK 448 (463)
T ss_dssp CEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGCCC
T ss_pred cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHH
Confidence 899999999989999999999999999999999999999999999999999999999987654
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-67 Score=544.26 Aligned_cols=441 Identities=27% Similarity=0.451 Sum_probs=370.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.+.........+. ....+|+... ..+++.
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~~~gc~P~k~l~~~a~~~~~~~-~~~~~g~~~~-~~~~~~ 78 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILE-NSRHYGFDTK-FSFNLP 78 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHH-HGGGGTCCCC-CCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCccccccCCcchHHHHHHHHHHHHHH-hhHhcCCccC-CccCHH
Confidence 489999999999999999999999999999996 6999999999999998877665555443 3445566544 567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEcc---------CCceEEEEeCeEEEccCCCCCC--C
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTI---------EGGNTVVKGKNIIIATGSDVKS--L 191 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~---------~g~~~~~~~d~lvlAtG~~p~~--~ 191 (507)
.+..+.+..+..+...+...+++.+++++.+++.+++.+.+.+... ++....+.||+||||||++|.. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p~i 158 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPV 158 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCCCC
Confidence 9998888888888888888888999999999877777655555320 1112679999999999999853 3
Q ss_pred CCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcE
Q 010573 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 192 pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
||. ..+++++++..+.. +++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.+++.||+
T Consensus 159 ~G~----~~~~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~ 233 (500)
T 1onf_A 159 KGI----ENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNIN 233 (500)
T ss_dssp TTG----GGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred CCC----CcccCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHHHhCCCE
Confidence 443 23667778877766 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCceEEEEEEcCC-eEEEEEeecCCCceEE-EEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCe
Q 010573 272 FMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTI-LEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349 (507)
Q Consensus 272 i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~-i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~I 349 (507)
+++++++++++.+++ .+.+++. ++++ +++|.|++|+|++|+++.|.++.+|+++ ++|+|.||+++||+.|+|
T Consensus 234 i~~~~~v~~i~~~~~~~~~v~~~-----~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~t~~~~i 307 (500)
T 1onf_A 234 IVTFADVVEIKKVSDKNLSIHLS-----DGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQRTSVNNI 307 (500)
T ss_dssp EECSCCEEEEEESSTTCEEEEET-----TSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCBCSSSSE
T ss_pred EEECCEEEEEEEcCCceEEEEEC-----CCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcccCCCCE
Confidence 999999999987643 3666664 3445 9999999999999999765567889998 779999999999999999
Q ss_pred EEecCCC----------------------------------CCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEc
Q 010573 350 YAIGDVI----------------------------------PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYT 394 (507)
Q Consensus 350 yA~GD~a----------------------------------~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~ 394 (507)
||+|||+ +.+.+++.|.+||+.||+||++.. ...+|..+|+++|+
T Consensus 308 ya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~ 387 (500)
T 1onf_A 308 YAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFS 387 (500)
T ss_dssp EECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSCCEEECC
T ss_pred EEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCCCeEEEc
Confidence 9999999 566799999999999999999753 34678889999999
Q ss_pred CCCeeeecCCHHHHHHc-C-CCEEEEEEecCcccchh----hcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHH
Q 010573 395 HPEVASVGKTEEQVKEL-G-VEYRVGKFPFLANSRAK----AIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVL 468 (507)
Q Consensus 395 ~~~~~~vG~~~~~~~~~-~-~~~~~~~~~~~~~~~~~----~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~ 468 (507)
+|+++++|+++++++.. | .++.+...++....++. ...++.+|+|+++|+++++|||+|++|+++.|+|+.+++
T Consensus 388 ~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ 467 (500)
T 1onf_A 388 HPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIVQGFAV 467 (500)
T ss_dssp SSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHH
T ss_pred CcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHH
Confidence 99999999999999887 4 68888888888887776 345678999999999999999999999999999999999
Q ss_pred HHHCCCCHHHHhcCcCCCCChHHHHHHHH
Q 010573 469 AINYDASSEDIARVCHAHPTMSEALKEAA 497 (507)
Q Consensus 469 ~i~~~~~~~~l~~~~~~~p~~~~~~~~~~ 497 (507)
||+.++|++||.+++++|||++|++..++
T Consensus 468 ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 496 (500)
T 1onf_A 468 ALKMNATKKDFDETIPIHPTAAEEFLTLQ 496 (500)
T ss_dssp HHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred HHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence 99999999999999999999999997654
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-68 Score=550.68 Aligned_cols=440 Identities=24% Similarity=0.381 Sum_probs=373.9
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
+..++||+|||||+||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+......+....+ ...+++ +..
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~~g~-~~~--- 114 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART-FSGQYW-FPD--- 114 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHH-TTTSTT-CCC---
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhh-hhhcCc-HHH---
Confidence 455799999999999999999999999999999998779999999999999988776666554432 233443 111
Q ss_pred ChHHHHHH---HHHHHHHHHHHHH---HHH-----HhCCcEEE-EeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC
Q 010573 120 DLPAMMAQ---KDKAVSNLTRGIE---GLF-----KKNKVTYV-KGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD 187 (507)
Q Consensus 120 ~~~~~~~~---~~~~~~~~~~~~~---~~~-----~~~~v~~~-~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~ 187 (507)
+..+ .+.....+...+. .++ ++.+++++ .+.+.+++.+.+.+. + ..+.||+||+|||++
T Consensus 115 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~---g--~~~~~d~lViATGs~ 185 (523)
T 1mo9_A 115 ----MTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAA---G--KVFKAKNLILAVGAG 185 (523)
T ss_dssp ----CTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEET---T--EEEEBSCEEECCCEE
T ss_pred ----HHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEEC---C--EEEEeCEEEECCCCC
Confidence 1111 2222333333233 455 77899998 778888887765553 4 679999999999998
Q ss_pred CCC--CCCCccCCceEecchhhc-cccCCC-CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHH
Q 010573 188 VKS--LPGITIDEKRIVSSTGAL-ALNEVP-KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQR 263 (507)
Q Consensus 188 p~~--~pg~~~~~~~~~~~~~~~-~~~~~~-~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~ 263 (507)
|.. +||.. ...++++.++. .+...+ ++++|||+|++|+|+|..+.+.|.+|+++++.+++++.+++++.+.+.+
T Consensus 186 p~~p~i~G~~--~~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~ 263 (523)
T 1mo9_A 186 PGTLDVPGVN--AKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLD 263 (523)
T ss_dssp CCCCCSTTTT--SBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHH
T ss_pred CCCCCCCCcc--cCcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHH
Confidence 854 34443 33477888888 777777 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcEEEcCceEEEEEEcCCe----EEEEEeecCCCceE-EEEcCEEEEeecCCCCCC-CCCCcccCceecCCCCee
Q 010573 264 SLEKQKMKFMLKTKVVGVDLSGDG----VKLTLEPAAGGEKT-ILEADVVLVSAGRTPFTA-GLGLDKIGVETDKMGRIP 337 (507)
Q Consensus 264 ~l~~~Gv~i~~~~~v~~i~~~~~~----v~v~~~~~~~g~~~-~i~~D~vi~a~G~~p~~~-~l~~~~~gl~~~~~G~i~ 337 (507)
.+++.||+++++++|++++.++++ +.+++. +++ ++++|.||+|+|++|++. + ++..|++++++|+|.
T Consensus 264 ~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~-----~G~~~i~aD~Vv~A~G~~p~~~~~--l~~~gl~~~~~G~i~ 336 (523)
T 1mo9_A 264 RMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTP-----NGEMRIETDFVFLGLGEQPRSAEL--AKILGLDLGPKGEVL 336 (523)
T ss_dssp HHHHTTCEEESSCEEEEEEECTTSBEEEEEEEET-----TEEEEEECSCEEECCCCEECCHHH--HHHHTCCBCTTSCBC
T ss_pred HHHhCCcEEEECCEEEEEEEcCCCceEEEEEEEC-----CCcEEEEcCEEEECcCCccCCccC--HHHcCCccCCCCCEE
Confidence 999999999999999999875554 556653 455 899999999999999997 4 678899998889999
Q ss_pred cCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEE
Q 010573 338 VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV 417 (507)
Q Consensus 338 Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 417 (507)
||+++||+.|+|||+|||++.+.+++.|..||+.||.||++...++++..+|+++|++|+++++|+|+++|+..|+++.+
T Consensus 337 Vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~ 416 (523)
T 1mo9_A 337 VNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVT 416 (523)
T ss_dssp CCTTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSEEEEEECCHHHHHHTTCCEEE
T ss_pred ECCCCccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhCCCCEEE
Confidence 99999999999999999999889999999999999999998766667888999999999999999999999999999999
Q ss_pred EEEecCc--------------ccchhhc--CCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhc
Q 010573 418 GKFPFLA--------------NSRAKAI--DDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIAR 481 (507)
Q Consensus 418 ~~~~~~~--------------~~~~~~~--~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~ 481 (507)
..+++.. ..++.+. +++.+|+|+++|+++++|||+|++|+++.|+|+.++.||++++|+++|.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~ 496 (523)
T 1mo9_A 417 IKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGD 496 (523)
T ss_dssp EEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHT
T ss_pred EEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHh
Confidence 9988876 6677777 67789999999988999999999999999999999999999999999999
Q ss_pred C--cCCCCChHHHHHHHHHHhcc
Q 010573 482 V--CHAHPTMSEALKEAAMATHD 502 (507)
Q Consensus 482 ~--~~~~p~~~~~~~~~~~~~~~ 502 (507)
+ +++|||++|++.++++...|
T Consensus 497 ~~~~~~~Pt~~e~~~~~~~~~~~ 519 (523)
T 1mo9_A 497 MDELFLNPTHFIQLSRLRAGSKN 519 (523)
T ss_dssp SCCCSSCSCCHHHHHHHHTTCSS
T ss_pred CCcceECCCHHHHHHHHHHhhHh
Confidence 9 99999999999998877655
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-63 Score=524.00 Aligned_cols=452 Identities=29% Similarity=0.450 Sum_probs=377.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC-C-------CCCceeccccccchhhhhhhhHHHHHHHhhhhhCCc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-G-------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~-------~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 112 (507)
...|||+||||||||++||.+|++.|++|+|||+. + .+||+|.+.+|+|++.+.......... .....+|+
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~-~~~~~~g~ 183 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHAL-EDAEHFGW 183 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHH-HHHHHTTC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHH-hhHHhCCc
Confidence 45689999999999999999999999999999973 2 489999999999999887665544433 33456676
Q ss_pred ccCc--cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 113 KFSS--VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 113 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
.... ...+|..+..+....+..+...+...+...+|+++.+.+.+++.+.+.+...+|+...+.||+||||||++|..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p~~ 263 (598)
T 2x8g_A 184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKY 263 (598)
T ss_dssp CCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCCCC
Confidence 5432 46788999888888887777666667778899999999999999998888777755679999999999998853
Q ss_pred --CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc
Q 010573 191 --LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (507)
Q Consensus 191 --~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~ 268 (507)
+||.. ...++..+++.+...+++++|||+|++|+|+|..|+++|.+||++++. .+++.+|+++.+.+.+.+++.
T Consensus 264 p~i~G~~---~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~ 339 (598)
T 2x8g_A 264 PEIPGAV---EYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENH 339 (598)
T ss_dssp CSSTTHH---HHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCcc---cceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhC
Confidence 34432 234566777777777899999999999999999999999999999988 678889999999999999999
Q ss_pred CcEEEcCceEEEEEEc------C---CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecC
Q 010573 269 KMKFMLKTKVVGVDLS------G---DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN 339 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~------~---~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd 339 (507)
||++++++.+++++.. + +.+.+.+.. .+|+...+++|.|++|+|++|+++++.++..|++++++|+|.||
T Consensus 340 gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd 418 (598)
T 2x8g_A 340 GVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHY-TDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCT 418 (598)
T ss_dssp TCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEE-TTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCC
T ss_pred CCEEEECCeEEEEEeccccccccCCCceEEEEEEe-CCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeC
Confidence 9999999988888542 2 445554322 22333345699999999999999876667889999988999999
Q ss_pred CCCCCCCCCeEEecCCC-CCCCcHhHHHHHHHHHHHHHcCCC-CCCCCCCccEEEEcCCCeeeecCCHHHHHHc-C-CCE
Q 010573 340 ERFATNIPGVYAIGDVI-PGPMLAHKAEEDGVACVEFLAGKH-GHVDYDKVPGVVYTHPEVASVGKTEEQVKEL-G-VEY 415 (507)
Q Consensus 340 ~~~~t~~~~IyA~GD~a-~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~vG~~~~~~~~~-~-~~~ 415 (507)
+++||++|+|||+|||+ +.+.+++.|.+||+.||.||++.. ...+|..+|.++|++|+++++|+++.+++.. + ..+
T Consensus 419 ~~~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~ 498 (598)
T 2x8g_A 419 DDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDI 498 (598)
T ss_dssp TTSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGGGE
T ss_pred CCCcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEEEeCCHHHHHhhCCCCcE
Confidence 99999999999999995 557899999999999999999654 3467888999999999999999999999876 4 347
Q ss_pred EEEEEecCcccchhhcC-CcceEEEEEEEC-CCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHH
Q 010573 416 RVGKFPFLANSRAKAID-DAEGIVKILAEK-ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493 (507)
Q Consensus 416 ~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~-~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~ 493 (507)
.+...++....++.... ...+|+|+++++ ++++|||+|++|+++.++|+.+++||++++|++||.+++++|||++|++
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 578 (598)
T 2x8g_A 499 EVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETF 578 (598)
T ss_dssp EEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGG
T ss_pred EEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHH
Confidence 77777777766665543 367999999995 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 010573 494 KEAAM 498 (507)
Q Consensus 494 ~~~~~ 498 (507)
..++.
T Consensus 579 ~~~~~ 583 (598)
T 2x8g_A 579 TTLHV 583 (598)
T ss_dssp GSCCC
T ss_pred HHHHH
Confidence 87764
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-60 Score=481.12 Aligned_cols=401 Identities=20% Similarity=0.288 Sum_probs=310.5
Q ss_pred cEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+||||||||||++||.+|++.| .+|+|||+++..++. ..|+|.. +. .........+..
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~---~~~l~~~---------------~~-~~~~~~~~~~~~- 61 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFA---NCALPYV---------------IG-EVVEDRRYALAY- 61 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBC---GGGHHHH---------------HT-TSSCCGGGTBCC-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCC---cchhHHH---------------Hc-CCccchhhhhhc-
Confidence 6999999999999999999987 579999997654331 1122211 00 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEc---cCCceEEEEeCeEEEccCCCCCCCCCCccCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDT---IEGGNTVVKGKNIIIATGSDVKSLPGITIDE 198 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~---~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~ 198 (507)
..+.++++.+++++.+ .+..+|.....+.. ..++...+.||+||||||++|..+ +.+.+.
T Consensus 62 ---------------~~~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p-~i~g~~ 125 (437)
T 4eqs_A 62 ---------------TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-GFESDI 125 (437)
T ss_dssp ---------------CHHHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCC-CCCCTT
T ss_pred ---------------CHHHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccc-cccCce
Confidence 0134556678998876 46677655443332 334457899999999999998643 232222
Q ss_pred c-eEecchhhcccc-----CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 199 K-RIVSSTGALALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 199 ~-~~~~~~~~~~~~-----~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
. .+.+..++..++ ..+++++|||+|++|+|+|..+.++|.+||++++.+++++.+|+++.+.+.+.++++||++
T Consensus 126 ~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i 205 (437)
T 4eqs_A 126 TFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPY 205 (437)
T ss_dssp EECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCE
T ss_pred EEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEE
Confidence 1 122334443332 3488999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEe
Q 010573 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~ 352 (507)
++++.|++++ ++. ++++ +++++++|.|++|+|++||+++ ++..|++++++|+|.||+++|||+|||||+
T Consensus 206 ~~~~~v~~~~--~~~--v~~~-----~g~~~~~D~vl~a~G~~Pn~~~--~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~ 274 (437)
T 4eqs_A 206 RLNEEINAIN--GNE--ITFK-----SGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVNDKFETNVPNIYAI 274 (437)
T ss_dssp EESCCEEEEE--TTE--EEET-----TSCEEECSEEEECCCEEESCGG--GTTSSCCCCTTSCEECCTTCBCSSTTEEEC
T ss_pred EeccEEEEec--CCe--eeec-----CCeEEeeeeEEEEeceecCcHH--HHhhhhhhccCCcEecCCCccCCCCCEEEE
Confidence 9999999885 333 4443 5678999999999999999986 678899999999999999999999999999
Q ss_pred cCCCCC----------CCcHhHHHHHHHHHHHHHcCCCCC--CCCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEE
Q 010573 353 GDVIPG----------PMLAHKAEEDGVACVEFLAGKHGH--VDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKF 420 (507)
Q Consensus 353 GD~a~~----------~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~ 420 (507)
|||++. +++++.|.+||+++|+||+|.+.. ..+..+|.+.|++|++++||+||++|+..+++ +..+
T Consensus 275 GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~--~~~~ 352 (437)
T 4eqs_A 275 GDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYK--MVEV 352 (437)
T ss_dssp GGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEE--EEEE
T ss_pred EEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCce--EEEE
Confidence 999853 347899999999999999987642 24566788999999999999999999876644 4444
Q ss_pred ecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHhcCcCC-CCChHHHHHH
Q 010573 421 PFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAVLAINYDASSEDIARVCHA-HPTMSEALKE 495 (507)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~~~~~-~p~~~~~~~~ 495 (507)
++....+. ..++++||+|+++|+++++|||+|++|++ +.|+|+.+++||++++|++||.+++++ ||+|+++++.
T Consensus 353 ~~~~~~~~-~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~~d~ 428 (437)
T 4eqs_A 353 TQGAHANY-YPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHPKDL 428 (437)
T ss_dssp EEESSCTT-SSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCH
T ss_pred ecCCchhh-cCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCchHHH
Confidence 44433332 23567899999999999999999999985 899999999999999999999999765 8999986433
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-59 Score=475.44 Aligned_cols=409 Identities=21% Similarity=0.252 Sum_probs=319.8
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+||+|||||+||++||.+|++. |++|+|||+++.+|. .|............ ......
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~-------~~~~~~~~~~~~~~-----------~~~~~~--- 61 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGY-------LSGGLSAYFNHTIN-----------ELHEAR--- 61 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSS-------CCC---------------------------C---
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcc-------cCccchhhhcCCCC-----------CHHHhh---
Confidence 5999999999999999999998 899999999876652 22111000000000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCC--EEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~--~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~ 198 (507)
....+++++.+++++.+ .+..++.. .+.+.. .++...+.||++|||||++|..++....+.
T Consensus 62 ---------------~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~-~~~~~~~~~d~lviAtG~~p~~p~i~g~~~ 125 (452)
T 3oc4_A 62 ---------------YITEEELRRQKIQLLLNREVVAMDVENQLIAWTR-KEEQQWYSYDKLILATGASQFSTQIRGSQT 125 (452)
T ss_dssp ---------------CCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEE-TTEEEEEECSEEEECCCCCBCCCCCBTTTC
T ss_pred ---------------cCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEe-cCceEEEEcCEEEECCCcccCCCCCCCCCC
Confidence 00124556678988765 56666544 444431 223478999999999999985443222223
Q ss_pred ceEecchhh------ccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-CCHHHHHHHHHHHHhcCcE
Q 010573 199 KRIVSSTGA------LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 199 ~~~~~~~~~------~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-~d~~~~~~~~~~l~~~Gv~ 271 (507)
..+++..+. ......+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +|+++.+.+.+.+++.||+
T Consensus 126 ~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~ 205 (452)
T 3oc4_A 126 EKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVI 205 (452)
T ss_dssp TTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEE
T ss_pred CCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCE
Confidence 445554433 223346899999999999999999999999999999999999885 8999999999999999999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
++++++|++++.+++++.+.+. ++ ++++|.|++|+|++|+++++ +.. ++++++|+|.||+++||+.|+|||
T Consensus 206 i~~~~~v~~i~~~~~~v~v~~~-----~g-~i~aD~Vv~A~G~~p~~~~l--~~~-~~~~~~g~i~vd~~~~t~~~~IyA 276 (452)
T 3oc4_A 206 FHFEETVLGIEETANGIVLETS-----EQ-EISCDSGIFALNLHPQLAYL--DKK-IQRNLDQTIAVDAYLQTSVPNVFA 276 (452)
T ss_dssp EEETCCEEEEEECSSCEEEEES-----SC-EEEESEEEECSCCBCCCSSC--CTT-SCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred EEeCCEEEEEEccCCeEEEEEC-----CC-EEEeCEEEECcCCCCChHHH--Hhh-hccCCCCCEEECcCccCCCCCEEE
Confidence 9999999999876777766653 33 89999999999999999864 333 788888999999999999999999
Q ss_pred ecCCCCCC----------CcHhHHHHHHHHHHHHHcCCCCCC--CCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEE
Q 010573 352 IGDVIPGP----------MLAHKAEEDGVACVEFLAGKHGHV--DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGK 419 (507)
Q Consensus 352 ~GD~a~~~----------~~~~~A~~~g~~aa~~i~~~~~~~--~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~ 419 (507)
+|||++.+ ++++.|..||+.||.||++..... .+..+|+.+|+ |+++++|+||++|++.|+++.+..
T Consensus 277 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~-~~~a~vG~te~~a~~~g~~~~~~~ 355 (452)
T 3oc4_A 277 IGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGD-YYLASTGLTETEGLFFPQTLASII 355 (452)
T ss_dssp CGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEETT-EEEEEEECCSGGGGGSSSCEEEEE
T ss_pred EEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEcC-eeEEEecCCHHHHHHCCCceEEEE
Confidence 99999753 589999999999999999875443 45667888885 699999999999999999999888
Q ss_pred EecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECC-ChHHHHHHHHHHHHCCCCHHHHhcC-cCCCCChHHH---HH
Q 010573 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP-NAGELIHEAVLAINYDASSEDIARV-CHAHPTMSEA---LK 494 (507)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~~-~~~~p~~~~~---~~ 494 (507)
+++.. ++ ..+++.+|+|+++++++++|||+|++|+ ++.|+|+.++.||++++|++||.++ +++|||++|+ +.
T Consensus 356 ~~~~~--~~-~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~ 432 (452)
T 3oc4_A 356 VRQPA--PP-LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNIYDITN 432 (452)
T ss_dssp EEEEC--TT-TTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCSSCHHH
T ss_pred EecCC--cc-CCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCchhHHH
Confidence 77644 33 3456789999999999999999999999 7999999999999999999999999 6899999995 55
Q ss_pred HHHHHhcc
Q 010573 495 EAAMATHD 502 (507)
Q Consensus 495 ~~~~~~~~ 502 (507)
.+++.+..
T Consensus 433 ~a~~~~~~ 440 (452)
T 3oc4_A 433 LMGASAYW 440 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55655544
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=470.46 Aligned_cols=405 Identities=22% Similarity=0.318 Sum_probs=320.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
++||+|||||+||++||..|++. +++|+|||+++.+++... .+|.. +. +. .+
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~---~~p~~---------------~~--~~------~~ 56 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC---GIPYV---------------VE--GL------ST 56 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc---CCccc---------------cC--CC------CC
Confidence 47999999999999999999998 789999999876653210 01110 00 00 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCcc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITI 196 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~ 196 (507)
. ..+.....+.+ ++.+++++.+ .+..++.+...+.+.++ ...+.||+||+|||++|. .+||...
T Consensus 57 ~-----------~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g-~~~~~~d~lviAtG~~p~~p~i~G~~~ 124 (449)
T 3kd9_A 57 P-----------DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGG-EKSYEWDYLVFANGASPQVPAIEGVNL 124 (449)
T ss_dssp --------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSSS-EEEEECSEEEECCCEEECCCSCBTTTS
T ss_pred H-----------HHhhhcCHHHHHHhcCcEEEecCEEEEEecCCCEEEECCc-eEEEEcCEEEECCCCCCCCCCCCCCCC
Confidence 0 00111111223 5679999988 78889988888877655 357999999999999885 3455432
Q ss_pred CCceEec---chhhccccC-----CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-CCHHHHHHHHHHHHh
Q 010573 197 DEKRIVS---STGALALNE-----VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEK 267 (507)
Q Consensus 197 ~~~~~~~---~~~~~~~~~-----~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-~d~~~~~~~~~~l~~ 267 (507)
..+++ ..++..+.. .+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus 125 --~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~ 202 (449)
T 3kd9_A 125 --KGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKK 202 (449)
T ss_dssp --TTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTT
T ss_pred --CCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHh
Confidence 23433 334433221 5789999999999999999999999999999999999886 999999999999999
Q ss_pred cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCC
Q 010573 268 QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIP 347 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~ 347 (507)
. |++++++.+.+++.++ .+...+. +++++++|.|++|+|++|++++ ++.+|++++++|+|.||+++||+.|
T Consensus 203 ~-v~i~~~~~v~~i~~~~-~v~~v~~-----~g~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~~~G~i~vd~~~~t~~~ 273 (449)
T 3kd9_A 203 H-VNLRLQEITMKIEGEE-RVEKVVT-----DAGEYKAELVILATGIKPNIEL--AKQLGVRIGETGAIWTNEKMQTSVE 273 (449)
T ss_dssp T-SEEEESCCEEEEECSS-SCCEEEE-----TTEEEECSEEEECSCEEECCHH--HHHTTCCBCTTSSBCCCTTCBCSST
T ss_pred C-cEEEeCCeEEEEeccC-cEEEEEe-----CCCEEECCEEEEeeCCccCHHH--HHhCCccCCCCCCEEECCCCccCCC
Confidence 9 9999999999997654 3332232 4578999999999999999976 6788999999999999999999999
Q ss_pred CeEEecCCCC-------C---CCcHhHHHHHHHHHHHHHcCCCCCCC-CCCccEEEEcCCCeeeecCCHHHHHHcCCCEE
Q 010573 348 GVYAIGDVIP-------G---PMLAHKAEEDGVACVEFLAGKHGHVD-YDKVPGVVYTHPEVASVGKTEEQVKELGVEYR 416 (507)
Q Consensus 348 ~IyA~GD~a~-------~---~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~ 416 (507)
+|||+|||+. . +.+++.|..||+.||+||+|...... +...|++.|++|+++++|+||++|++.|+++.
T Consensus 274 ~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~ 353 (449)
T 3kd9_A 274 NVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVR 353 (449)
T ss_dssp TEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEE
T ss_pred CEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceE
Confidence 9999999983 2 46899999999999999998765443 34568899999999999999999999999998
Q ss_pred EEEEecCcccchhhc-CCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCc-CCCCChHHHHH
Q 010573 417 VGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVC-HAHPTMSEALK 494 (507)
Q Consensus 417 ~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~-~~~p~~~~~~~ 494 (507)
+..++ ...++... +++.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++ ++||++++.+.
T Consensus 354 ~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~~ 431 (449)
T 3kd9_A 354 TAFIK--ASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVWD 431 (449)
T ss_dssp EEEEE--EESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSSC
T ss_pred EEEEe--cCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCchh
Confidence 88765 34555555 5678999999999999999999999999999999999999999999999984 57999998755
Q ss_pred HHHH
Q 010573 495 EAAM 498 (507)
Q Consensus 495 ~~~~ 498 (507)
.+..
T Consensus 432 ~~~~ 435 (449)
T 3kd9_A 432 PLIV 435 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=474.69 Aligned_cols=421 Identities=23% Similarity=0.298 Sum_probs=301.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccc-cchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
++||+|||||+||++||..|++. |++|+|||+++.++.. .| +|... ... +.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~----~~gl~~~~-----------~g~-----~~------ 56 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYG----GCGIPYYV-----------SGE-----VS------ 56 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccccc----ccccchhh-----------cCC-----CC------
Confidence 46999999999999999999998 8999999997765421 11 11100 000 00
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEcc---CCceEEEEeCeEEEccCCCCC--CCCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTI---EGGNTVVKGKNIIIATGSDVK--SLPG 193 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~---~g~~~~~~~d~lvlAtG~~p~--~~pg 193 (507)
....+.+.. ..+....+.+.++.+++++.+ .+..++.....+.+. +|+...+.||+||+|||++|. .+||
T Consensus 57 ~~~~~~~~~----~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G 132 (472)
T 3iwa_A 57 NIESLQATP----YNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEG 132 (472)
T ss_dssp ----------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTT
T ss_pred chHHhcccc----chhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCC
Confidence 000000000 001111122333568888665 566666544444333 365568999999999999874 4555
Q ss_pred CccCCce-Eecchhhcccc-----CCCCeEEEEcCcHHHHHHHHHHHhc-CCeeEEEcccCccCC-CCCHHHHHHHHHHH
Q 010573 194 ITIDEKR-IVSSTGALALN-----EVPKKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVP-SMDGEIRKQFQRSL 265 (507)
Q Consensus 194 ~~~~~~~-~~~~~~~~~~~-----~~~~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l 265 (507)
....+.. +.+..+...+. ..+++++|||+|.+|+|+|..+.+. |.+|+++++.+++++ .+++++.+.+.+.+
T Consensus 133 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 212 (472)
T 3iwa_A 133 MDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDL 212 (472)
T ss_dssp TTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHH
Confidence 5422221 22334444433 4589999999999999999999999 999999999999998 99999999999999
Q ss_pred HhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCC
Q 010573 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATN 345 (507)
Q Consensus 266 ~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~ 345 (507)
++.||+++++++|++++.+++.+.+.+. +++++++|.||+|+|++|++.+ ++..|++++++|+|.||+++||+
T Consensus 213 ~~~GV~i~~~~~v~~i~~~~~~v~v~~~-----~g~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~~~g~i~vd~~~~t~ 285 (472)
T 3iwa_A 213 EKNDVVVHTGEKVVRLEGENGKVARVIT-----DKRTLDADLVILAAGVSPNTQL--ARDAGLELDPRGAIIVDTRMRTS 285 (472)
T ss_dssp HHTTCEEECSCCEEEEEESSSBEEEEEE-----SSCEEECSEEEECSCEEECCHH--HHHHTCCBCTTCCEECCTTCBCS
T ss_pred HhcCCEEEeCCEEEEEEccCCeEEEEEe-----CCCEEEcCEEEECCCCCcCHHH--HHhCCccCCCCCCEEECCCcccC
Confidence 9999999999999999887777777765 4568999999999999999875 56788999999999999999999
Q ss_pred CCCeEEecCCC-------CC---CCcHhHHHHHHHHHHHHHcCCCCCCC-CCCccEEEEcCCCeeeecCCHHHHHHcCCC
Q 010573 346 IPGVYAIGDVI-------PG---PMLAHKAEEDGVACVEFLAGKHGHVD-YDKVPGVVYTHPEVASVGKTEEQVKELGVE 414 (507)
Q Consensus 346 ~~~IyA~GD~a-------~~---~~~~~~A~~~g~~aa~~i~~~~~~~~-~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~ 414 (507)
.|+|||+|||+ +. +.+++.|..||++||+||+|...... ....+.+.|++|+++++|+||++|++.|++
T Consensus 286 ~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~ 365 (472)
T 3iwa_A 286 DPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTVEGALREGYD 365 (472)
T ss_dssp STTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCC
T ss_pred CCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCHHHHHHcCCc
Confidence 99999999998 32 35789999999999999998764421 122334568899999999999999999999
Q ss_pred EEEEEEecCcccchhhc-CCcceEEEEEEECCCCeEEEEEEECC---ChHHHHHHHHHHHHCCCCHHHHhcCcCCC-CCh
Q 010573 415 YRVGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAP---NAGELIHEAVLAINYDASSEDIARVCHAH-PTM 489 (507)
Q Consensus 415 ~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~ilG~~~~g~---~~~~~~~~~~~~i~~~~~~~~l~~~~~~~-p~~ 489 (507)
+.+..++ ...++.++ +++++|+|+++|+++++|||+|++|+ .+.|+|+.+++||++++|++||.+++++| ||+
T Consensus 366 ~~~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~ 443 (472)
T 3iwa_A 366 AVNVHVE--QFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPF 443 (472)
T ss_dssp EEEEEEE--C-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC-----
T ss_pred eEEEEEe--cCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCC
Confidence 9988754 45566666 67889999999999999999999999 45899999999999999999999999987 999
Q ss_pred HHHHH---HHHHHhcc
Q 010573 490 SEALK---EAAMATHD 502 (507)
Q Consensus 490 ~~~~~---~~~~~~~~ 502 (507)
+|+++ .++..+.|
T Consensus 444 ~~~~~~~~~~~~~~~~ 459 (472)
T 3iwa_A 444 ASAMDIVNVAGNVADN 459 (472)
T ss_dssp ---CCHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHH
Confidence 99754 44444444
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-56 Score=458.94 Aligned_cols=428 Identities=20% Similarity=0.239 Sum_probs=318.9
Q ss_pred cccccccceeeeeeccccccCCCCCCCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccc-cchhhhh
Q 010573 18 LSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALL 94 (507)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~~~ 94 (507)
..||..+|+.....+ .+...++||+|||||+||++||..|++. |.+|+|||+++..++. .| +|..
T Consensus 16 ~~np~~g~~~~~~~~-----~~~~~~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~----~~~~~~~--- 83 (480)
T 3cgb_A 16 TGGQQMGRTLYDDDD-----KDRWGSMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYA----QCGLPYV--- 83 (480)
T ss_dssp --------------------------CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBC----GGGHHHH---
T ss_pred cchhhhcccccCCCC-----cCccccceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCC----CCCcchh---
Confidence 468888887422111 1111247999999999999999999996 8999999997665431 11 1100
Q ss_pred hhhHHHHHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEe-EEEEec--CCEEEEEc-cC
Q 010573 95 HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKG-YGKFIS--PSEVSVDT-IE 169 (507)
Q Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~d--~~~~~v~~-~~ 169 (507)
+.... .++..+. ....+.+ +..+++++.+ .+..++ .+.+.+.. .+
T Consensus 84 ------------~~~~~-------~~~~~l~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~ 133 (480)
T 3cgb_A 84 ------------ISGAI-------ASTEKLI-----------ARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKT 133 (480)
T ss_dssp ------------HTTSS-------SCGGGGB-----------SSCHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTT
T ss_pred ------------hcCCc-------CCHHHhh-----------hcCHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCC
Confidence 00000 0011100 0001223 4558999886 556665 44555543 34
Q ss_pred CceEEEEeCeEEEccCCCCCC--CCCCccCCceEec---chhhccccC-----CCCeEEEEcCcHHHHHHHHHHHhcCCe
Q 010573 170 GGNTVVKGKNIIIATGSDVKS--LPGITIDEKRIVS---STGALALNE-----VPKKLVVIGAGYIGLEMGSVWARLGSE 239 (507)
Q Consensus 170 g~~~~~~~d~lvlAtG~~p~~--~pg~~~~~~~~~~---~~~~~~~~~-----~~~~vvVvG~G~~g~e~A~~l~~~g~~ 239 (507)
|+..++.||+||+|||++|.. +||... ..+++ .+++..+.. .+++++|||+|++|+|+|..+.+.|.+
T Consensus 134 g~~~~~~~d~lviAtG~~p~~p~i~G~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~ 211 (480)
T 3cgb_A 134 KDVFEFSYDRLLIATGVRPVMPEWEGRDL--QGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKK 211 (480)
T ss_dssp CCEEEEECSEEEECCCEEECCCCCBTTTS--BTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCE
T ss_pred CceEEEEcCEEEECCCCcccCCCCCCccC--CCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCe
Confidence 643479999999999998853 445432 33443 445544433 689999999999999999999999999
Q ss_pred eEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 240 Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
|+++++.+.+++.+++++.+.+.+.+++.||+++++++|++++.+++...+.+ ++.++++|.||+|+|++|+++
T Consensus 212 Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~------~~~~i~~D~vi~a~G~~p~~~ 285 (480)
T 3cgb_A 212 VRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVET------DKGTYKADLVLVSVGVKPNTD 285 (480)
T ss_dssp EEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEE------TTEEEECSEEEECSCEEESCG
T ss_pred EEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEE------CCCEEEcCEEEECcCCCcChH
Confidence 99999999999999999999999999999999999999999986532223443 235899999999999999988
Q ss_pred CCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC----------CCcHhHHHHHHHHHHHHHcCCCCCC-CCCCc
Q 010573 320 GLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHV-DYDKV 388 (507)
Q Consensus 320 ~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~ 388 (507)
+ ++..|++++++|+|.||+++||+.|+|||+|||+.. +++++.|..||++||.||++....+ .+..+
T Consensus 286 ~--l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~ 363 (480)
T 3cgb_A 286 F--LEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGT 363 (480)
T ss_dssp G--GTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCC
T ss_pred H--HHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccce
Confidence 6 577889998889999999999999999999999942 2579999999999999999865443 35568
Q ss_pred cEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhc-CCcceEEEEEEECCCCeEEEEEEECCC-hHHHHHHH
Q 010573 389 PGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEA 466 (507)
Q Consensus 389 p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~ilG~~~~g~~-~~~~~~~~ 466 (507)
|++.|++|+++++|+++++++..|+++.+..+.. ..++... .++.+|+|+++++++++|+|++++|+. +.|+|+.+
T Consensus 364 ~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~ 441 (480)
T 3cgb_A 364 GIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDS--TNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVI 441 (480)
T ss_dssp EEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEE--ESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHH
T ss_pred eEEEECCcEEEEeCCCHHHHHHcCCceEEEEEec--CCcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHH
Confidence 9999999999999999999999999998877554 3333333 456789999999889999999999998 99999999
Q ss_pred HHHHHCCCCHHHHhcC-cCCCCChHHHHHHHHHH
Q 010573 467 VLAINYDASSEDIARV-CHAHPTMSEALKEAAMA 499 (507)
Q Consensus 467 ~~~i~~~~~~~~l~~~-~~~~p~~~~~~~~~~~~ 499 (507)
+.+|++++|+++|.++ +++|||++|++..+..+
T Consensus 442 ~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~a 475 (480)
T 3cgb_A 442 AMALFNKMSIHDLEDVDLSYAPPYNSVWDPIQQA 475 (480)
T ss_dssp HHHHHTTCBGGGGGGCCCCCCTTTCCSSCHHHHH
T ss_pred HHHHHcCCCHHHHhhcccccCCCCCCchhHHHHH
Confidence 9999999999999997 56899999987666443
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-56 Score=456.61 Aligned_cols=413 Identities=17% Similarity=0.209 Sum_probs=319.2
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
|||+|||||+||++||..|++. |.+|+|||+++.++. .+| ... .. +. ..+. ..++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~----~~~---~~~-------~~----~~-g~~~----~~~~ 57 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF----LSC---GIA-------LY----LG-KEIK----NNDP 57 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB----CGG---GHH-------HH----HT-TCBG----GGCG
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc----ccc---cch-------hh----hc-CCcc----cCCH
Confidence 5899999999999999999998 999999999765542 112 000 00 00 0000 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEc-cCCceEEEEeCeEEEccCCCCCC--CCCCc
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDT-IEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~-~~g~~~~~~~d~lvlAtG~~p~~--~pg~~ 195 (507)
..+ .....+++++.+++++.+. +..++ .+.+.+.. .+++...+.||+||+|||++|.. +||..
T Consensus 58 ~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~ 126 (452)
T 2cdu_A 58 RGL-----------FYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGID 126 (452)
T ss_dssp GGG-----------BSCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTT
T ss_pred HHh-----------hhcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCC
Confidence 100 0011244566799997775 66665 44555543 22334789999999999998853 44543
Q ss_pred cCCceEecch------hhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhc
Q 010573 196 IDEKRIVSST------GALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQ 268 (507)
Q Consensus 196 ~~~~~~~~~~------~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~ 268 (507)
. ..+++.. ++......+++++|||+|++|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.+++.
T Consensus 127 ~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~ 204 (452)
T 2cdu_A 127 S--SRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAH 204 (452)
T ss_dssp S--TTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHT
T ss_pred C--CCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHC
Confidence 2 2344332 2333345689999999999999999999999999999999999988 79999999999999999
Q ss_pred CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCC
Q 010573 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~ 348 (507)
||+++++++|++++.+++++..... +++++++|.||+|+|++|++++ ++.. ++++++|+|.||+++||+.|+
T Consensus 205 Gv~i~~~~~v~~i~~~~~~v~~v~~-----~g~~i~~D~vv~a~G~~p~~~l--l~~~-l~~~~~G~i~Vd~~~~t~~~~ 276 (452)
T 2cdu_A 205 GVNLVLGSKVAAFEEVDDEIITKTL-----DGKEIKSDIAILCIGFRPNTEL--LKGK-VAMLDNGAIITDEYMHSSNRD 276 (452)
T ss_dssp TCEEEESSCEEEEEEETTEEEEEET-----TSCEEEESEEEECCCEEECCGG--GTTT-SCBCTTSCBCCCTTSBCSSTT
T ss_pred CCEEEcCCeeEEEEcCCCeEEEEEe-----CCCEEECCEEEECcCCCCCHHH--HHHh-hhcCCCCCEEECCCcCcCCCC
Confidence 9999999999999875565542221 3468999999999999999986 5666 888888999999999999999
Q ss_pred eEEecCCCCC----------CCcHhHHHHHHHHHHHHHcCCCCCC-CCCCccEEEEcCCCeeeecCCHHHHHHcCCCEEE
Q 010573 349 VYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV 417 (507)
Q Consensus 349 IyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 417 (507)
|||+|||++. +.+++.|.+||+.||+||++..... .+...|+..+++|+++++|+++.+++..|+++.+
T Consensus 277 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~ 356 (452)
T 2cdu_A 277 IFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSE 356 (452)
T ss_dssp EEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEE
T ss_pred EEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEE
Confidence 9999999963 3689999999999999999865332 2345677788899999999999999999999887
Q ss_pred EEEecCcccchhhc-CCcceEEEEEEECCCCeEEEEEEECC-ChHHHHHHHHHHHHCCCCHHHHhcC-cCCCCChHHHHH
Q 010573 418 GKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAP-NAGELIHEAVLAINYDASSEDIARV-CHAHPTMSEALK 494 (507)
Q Consensus 418 ~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~ilG~~~~g~-~~~~~~~~~~~~i~~~~~~~~l~~~-~~~~p~~~~~~~ 494 (507)
.. +....++.++ .++.+++|+++++++++|+|+|++|+ ++.|+|+.++.+|++++|+++|..+ +++|||++|.+.
T Consensus 357 ~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~ 434 (452)
T 2cdu_A 357 VI--IADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFN 434 (452)
T ss_dssp EE--EEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSC
T ss_pred EE--EecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHH
Confidence 74 4455666665 35679999999988999999999999 8999999999999999999999987 799999999744
Q ss_pred H---HHHHhcc
Q 010573 495 E---AAMATHD 502 (507)
Q Consensus 495 ~---~~~~~~~ 502 (507)
. ++..+.+
T Consensus 435 ~~~~aa~~~~~ 445 (452)
T 2cdu_A 435 YLNILGQAAQA 445 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4 4554444
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-57 Score=475.05 Aligned_cols=422 Identities=21% Similarity=0.312 Sum_probs=314.1
Q ss_pred cccccccceeeeeeccccccCCCCCCCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccc-cchhhhh
Q 010573 18 LSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALL 94 (507)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~~~ 94 (507)
..||.++++..... ..+.+.++||+|||||+||++||.+|++. |++|+|||+++.++.. .| +|.
T Consensus 16 ~~np~~g~e~~~~~-----~~~~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~----~~~lp~---- 82 (588)
T 3ics_A 16 TGGQQMGRTLYDDD-----DKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFA----NCGLPY---- 82 (588)
T ss_dssp -----------------------CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC----GGGHHH----
T ss_pred ccchhcCccccCcc-----cCCcccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcccc----CCCCch----
Confidence 36888888866432 22334457999999999999999999998 8999999998766521 11 110
Q ss_pred hhhHHHHHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCC--EEEEEc-cCC
Q 010573 95 HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS--EVSVDT-IEG 170 (507)
Q Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~--~~~v~~-~~g 170 (507)
. +.......... +...++.+.++.++++..+ .+..++.. .+.+.. .+|
T Consensus 83 -------~----~~g~~~~~~~~-----------------~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g 134 (588)
T 3ics_A 83 -------Y----IGGVITERQKL-----------------LVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTN 134 (588)
T ss_dssp -------H----HTTSSCCGGGG-----------------BSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTC
T ss_pred -------h----hcCcCCChHHh-----------------hccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCC
Confidence 0 00000000000 0111234455778998765 56666544 444432 355
Q ss_pred ceEEEEeCeEEEccCCCCC--CCCCCccCCceEecchhhccc--------cCCCCeEEEEcCcHHHHHHHHHHHhcCCee
Q 010573 171 GNTVVKGKNIIIATGSDVK--SLPGITIDEKRIVSSTGALAL--------NEVPKKLVVIGAGYIGLEMGSVWARLGSEV 240 (507)
Q Consensus 171 ~~~~~~~d~lvlAtG~~p~--~~pg~~~~~~~~~~~~~~~~~--------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V 240 (507)
+...+.||+||+|||++|. .+||.. +...+++..+.... ...+++++|||+|.+|+|+|..+.+.|.+|
T Consensus 135 ~~~~~~~d~lviAtG~~p~~p~i~G~~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~V 213 (588)
T 3ics_A 135 ETYNEAYDVLILSPGAKPIVPSIPGIE-EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEV 213 (588)
T ss_dssp CEEEEECSEEEECCCEEECCCCCTTTT-TCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred CEEEEeCCEEEECCCCCCCCCCCCCcc-cCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeE
Confidence 4568999999999999875 445552 23345554433222 245899999999999999999999999999
Q ss_pred EEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 241 TVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 241 tlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+++++.+++++.+++++.+.+.+.+++.||+++++++|++++.++++ +++. +++++++|.||+|+|++|++++
T Consensus 214 tlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~-----~g~~i~~D~Vi~a~G~~p~~~~ 286 (588)
T 3ics_A 214 TLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLK-----SGSVIQTDMLILAIGVQPESSL 286 (588)
T ss_dssp EEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEET-----TSCEEECSEEEECSCEEECCHH
T ss_pred EEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEEC-----CCCEEEcCEEEEccCCCCChHH
Confidence 99999999999999999999999999999999999999999866554 4443 4568999999999999999976
Q ss_pred CCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC-------C---CCcHhHHHHHHHHHHHHHcC-CCCCCCCCCcc
Q 010573 321 LGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-------G---PMLAHKAEEDGVACVEFLAG-KHGHVDYDKVP 389 (507)
Q Consensus 321 l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~-------~---~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p 389 (507)
++..|++++++|+|.||+++||++|+|||+|||+. . +.+++.|..||++||+||+| ..... ...+|
T Consensus 287 --l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~-~~~~~ 363 (588)
T 3ics_A 287 --AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLY-KGTLG 363 (588)
T ss_dssp --HHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCC-CCBCC
T ss_pred --HHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCcccc-CCccc
Confidence 67889999989999999999999999999999993 2 45899999999999999998 54322 22333
Q ss_pred E--EEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECC-ChHHHHHHH
Q 010573 390 G--VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP-NAGELIHEA 466 (507)
Q Consensus 390 ~--~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~-~~~~~~~~~ 466 (507)
+ +.|++|++++||+||++|++.|+++.+..++..... ....+++.||+|+++|+++++|||+|++|+ .+.|+|+.+
T Consensus 364 ~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~ 442 (588)
T 3ics_A 364 TSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHA-GYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVI 442 (588)
T ss_dssp CEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSC-TTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHH
T ss_pred ceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCcc-ccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHH
Confidence 3 458899999999999999999999998886533221 234456789999999999999999999998 489999999
Q ss_pred HHHHHCCCCHHHHhcCcCCC-CChHHH
Q 010573 467 VLAINYDASSEDIARVCHAH-PTMSEA 492 (507)
Q Consensus 467 ~~~i~~~~~~~~l~~~~~~~-p~~~~~ 492 (507)
++||++++|++||.+++++| |++++.
T Consensus 443 ~~ai~~~~t~~~l~~~~~~~~P~~~~~ 469 (588)
T 3ics_A 443 ATAIKANLTVLDLPDLELSYAPPYSSA 469 (588)
T ss_dssp HHHHHTTCBTTTGGGCCCCCSTTTCCS
T ss_pred HHHHHcCCCHHHhhhhhhccCCCcccc
Confidence 99999999999999999887 987754
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-56 Score=451.29 Aligned_cols=404 Identities=24% Similarity=0.302 Sum_probs=315.1
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccc-cchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
+||+|||||+||++||..|++. |++|+|||+++.+|. .+| +|. .+............
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~----~~~~~~~---------------~~~~~~~~~~~~~~- 60 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF----LSAGMQL---------------YLEGKVKDVNSVRY- 60 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB----CGGGHHH---------------HHTTSSCCGGGSBS-
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCc----ccccchh---------------hhcCccCCHHHhhc-
Confidence 4899999999999999999998 899999999766542 122 110 00000000111110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEc-cCCceEEEEeCeEEEccCCCCCC--CCCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDT-IEGGNTVVKGKNIIIATGSDVKS--LPGI 194 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~-~~g~~~~~~~d~lvlAtG~~p~~--~pg~ 194 (507)
...+++++.+++++.+. +..++ .+.+.+.. .+|+..++.||+||||||++|.. +||.
T Consensus 61 -----------------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~ 123 (447)
T 1nhp_A 61 -----------------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGK 123 (447)
T ss_dssp -----------------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTT
T ss_pred -----------------CCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCC
Confidence 11234556789997764 44554 44555543 33544569999999999998853 4554
Q ss_pred ccCCceEecch---hhcccc---C--CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHH
Q 010573 195 TIDEKRIVSST---GALALN---E--VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSL 265 (507)
Q Consensus 195 ~~~~~~~~~~~---~~~~~~---~--~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l 265 (507)
. ...+++.. +...+. . .+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ .+++++.+.+.+.+
T Consensus 124 ~--~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 201 (447)
T 1nhp_A 124 D--LDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201 (447)
T ss_dssp T--SBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHH
T ss_pred C--CCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHH
Confidence 3 23455543 332221 2 689999999999999999999999999999999998888 68999999999999
Q ss_pred HhcCcEEEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCC
Q 010573 266 EKQKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFAT 344 (507)
Q Consensus 266 ~~~Gv~i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t 344 (507)
++.||+++++++|++++.+ +.+ .+.+ ++.++++|.|++|+|++|++.+ ++.. ++++++|+|.||+++||
T Consensus 202 ~~~gv~i~~~~~v~~i~~~-~~v~~v~~------~~~~i~~d~vi~a~G~~p~~~~--~~~~-~~~~~~G~i~Vd~~~~t 271 (447)
T 1nhp_A 202 EANNITIATGETVERYEGD-GRVQKVVT------DKNAYDADLVVVAVGVRPNTAW--LKGT-LELHPNGLIKTDEYMRT 271 (447)
T ss_dssp HTTTEEEEESCCEEEEECS-SBCCEEEE------SSCEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCCTTCBC
T ss_pred HhCCCEEEcCCEEEEEEcc-CcEEEEEE------CCCEEECCEEEECcCCCCChHH--HHhh-hhhcCCCcEEECccccC
Confidence 9999999999999999865 333 3443 2357999999999999999986 4555 77888899999999999
Q ss_pred CCCCeEEecCCCCC----------CCcHhHHHHHHHHHHHHHcCCCCCC-CCCCccEEEEcCCCeeeecCCHHHHHHcCC
Q 010573 345 NIPGVYAIGDVIPG----------PMLAHKAEEDGVACVEFLAGKHGHV-DYDKVPGVVYTHPEVASVGKTEEQVKELGV 413 (507)
Q Consensus 345 ~~~~IyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~p~~~~~~~~~~~vG~~~~~~~~~~~ 413 (507)
+.|+|||+|||+.. +.+++.|.+||+.||.||++...+. .+...|+..|++|+++++|+++++++..|+
T Consensus 272 ~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~ 351 (447)
T 1nhp_A 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGK 351 (447)
T ss_dssp SSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTC
T ss_pred CCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEecCCHHHHHHcCC
Confidence 99999999999962 3689999999999999999865332 345678899999999999999999999999
Q ss_pred CEEEEEEecCcccchhhc-CCcceEEEEEEECCCCeEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHhcC-cCCCCChH
Q 010573 414 EYRVGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAPN-AGELIHEAVLAINYDASSEDIARV-CHAHPTMS 490 (507)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~ilG~~~~g~~-~~~~~~~~~~~i~~~~~~~~l~~~-~~~~p~~~ 490 (507)
++.+.. +....++.+. +++.+|+|+++++++++|+|+|++|++ +.|+|+.++.+|++++|+++|.++ +++|||++
T Consensus 352 ~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~ 429 (447)
T 1nhp_A 352 ETKAVT--VVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFD 429 (447)
T ss_dssp CCEEEE--EEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTC
T ss_pred ceEEEE--EEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCC
Confidence 987765 3445555555 456799999999889999999999998 999999999999999999999997 68999999
Q ss_pred HHHHHHHH
Q 010573 491 EALKEAAM 498 (507)
Q Consensus 491 ~~~~~~~~ 498 (507)
|++..+..
T Consensus 430 e~~~~~~~ 437 (447)
T 1nhp_A 430 KPWNIINT 437 (447)
T ss_dssp CSSCHHHH
T ss_pred CcccHHHH
Confidence 97655543
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=463.15 Aligned_cols=402 Identities=21% Similarity=0.301 Sum_probs=313.3
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccc-cchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGC-IPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
+||+|||||+||++||.+|++. +++|+|||+++.++.. .| +|. . +.............
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~----~~~l~~-----------~----~~~~~~~~~~~~~~ 62 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA----NCGLPY-----------H----ISGEIAQRSALVLQ 62 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBC----GGGHHH-----------H----HTSSSCCGGGGBCC
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcccc----ccCchH-----------H----hcCCcCChHHhhcc
Confidence 5899999999999999999998 7999999998766521 01 110 0 00000000000111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEc---cCCceEEEEeCeEEEccCCCCC--CCCCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDT---IEGGNTVVKGKNIIIATGSDVK--SLPGI 194 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~---~~g~~~~~~~d~lvlAtG~~p~--~~pg~ 194 (507)
. ...+.++.+++++.+ ++..++.....+.+ .+|+..++.||+||||||++|. .+||.
T Consensus 63 ~-----------------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~ 125 (565)
T 3ntd_A 63 T-----------------PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGV 125 (565)
T ss_dssp C-----------------HHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTC
T ss_pred C-----------------HHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCC
Confidence 1 122333468888654 56666654433333 3355568999999999999875 34554
Q ss_pred ccCCceEecchhh---cccc-----CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHH
Q 010573 195 TIDEKRIVSSTGA---LALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLE 266 (507)
Q Consensus 195 ~~~~~~~~~~~~~---~~~~-----~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~ 266 (507)
. ...+++..++ ..+. ..+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++.+++++.+.+.+.++
T Consensus 126 ~--~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~ 203 (565)
T 3ntd_A 126 D--NPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIR 203 (565)
T ss_dssp C--STTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHH
T ss_pred C--CCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHH
Confidence 3 3334444332 2222 4589999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEEcCceEEEEEE-------------------cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccC
Q 010573 267 KQKMKFMLKTKVVGVDL-------------------SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG 327 (507)
Q Consensus 267 ~~Gv~i~~~~~v~~i~~-------------------~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g 327 (507)
+.||++++++.+++++. .++++.+.+. +++++++|.||+|+|++|++.+ ++..|
T Consensus 204 ~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~l--~~~~g 276 (565)
T 3ntd_A 204 DQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLS-----NGELLETDLLIMAIGVRPETQL--ARDAG 276 (565)
T ss_dssp HTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEET-----TSCEEEESEEEECSCEEECCHH--HHHHT
T ss_pred HCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEc-----CCCEEEcCEEEECcCCccchHH--HHhCC
Confidence 99999999999999987 3566666653 4568999999999999999885 57788
Q ss_pred ceecCCCCeecCCCCCCCCCCeEEecCCCC-------C---CCcHhHHHHHHHHHHHHHcCCCCCCCC-CCccEEEEcCC
Q 010573 328 VETDKMGRIPVNERFATNIPGVYAIGDVIP-------G---PMLAHKAEEDGVACVEFLAGKHGHVDY-DKVPGVVYTHP 396 (507)
Q Consensus 328 l~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~-------~---~~~~~~A~~~g~~aa~~i~~~~~~~~~-~~~p~~~~~~~ 396 (507)
++++++|+|.||+++||+.|+|||+|||+. . +.+++.|..||+.||+||+|+...+.. ...+.+.|++|
T Consensus 277 ~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~ 356 (565)
T 3ntd_A 277 LAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDL 356 (565)
T ss_dssp CCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTE
T ss_pred cccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCc
Confidence 999999999999999999999999999983 2 247999999999999999987644322 22345668899
Q ss_pred CeeeecCCHHHHHHcCCCEEEEEEecCcccchhhc-CCcceEEEEEEECCCCeEEEEEEECCCh-HHHHHHHHHHHHCCC
Q 010573 397 EVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAI-DDAEGIVKILAEKETDKILGVHIMAPNA-GELIHEAVLAINYDA 474 (507)
Q Consensus 397 ~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~ilG~~~~g~~~-~~~~~~~~~~i~~~~ 474 (507)
+++++|++|++|++.|+++.+..+. ...++.++ +++.+|+|+++|+++++|||+|++|+++ .|+|+.+++||++++
T Consensus 357 ~~~~vG~~e~~a~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~ 434 (565)
T 3ntd_A 357 AVGATGKNEKQLKQAGIAFEKVYVH--TASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGM 434 (565)
T ss_dssp EEEEEECCHHHHHHTTCCCEEEEEE--EESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCHHHHHHcCCCeEEEEEe--cCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCC
Confidence 9999999999999999998876643 44555565 5678999999999999999999999998 899999999999999
Q ss_pred CHHHHhcCcCC-CCChHHH
Q 010573 475 SSEDIARVCHA-HPTMSEA 492 (507)
Q Consensus 475 ~~~~l~~~~~~-~p~~~~~ 492 (507)
|++||.++++. ||++++.
T Consensus 435 ~~~~l~~~~~~~~P~~~~~ 453 (565)
T 3ntd_A 435 TVEQLQHLELSYAPPYGSA 453 (565)
T ss_dssp BHHHHTTCCCCCCTTTCCS
T ss_pred CHHHHhhhhhccCcccCch
Confidence 99999999854 6888754
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-48 Score=384.04 Aligned_cols=359 Identities=19% Similarity=0.273 Sum_probs=273.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
.++||+|||||+||++||..|++.| .+|+|+|++. +|.|++.++... +. .+.
T Consensus 3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~---------g~~~~~~~l~~~---------~~-~~~------- 56 (384)
T 2v3a_A 3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD---------GRSYSKPMLSTG---------FS-KNK------- 56 (384)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC---------CCEECGGGGGGT---------TT-TTC-------
T ss_pred CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC---------CCccCcccccHH---------Hh-CCC-------
Confidence 4589999999999999999999998 5699999853 344444322111 00 000
Q ss_pred ChHHHHHHHHHHHHHHH-HHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccC
Q 010573 120 DLPAMMAQKDKAVSNLT-RGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITID 197 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~ 197 (507)
.. ..+. .....++++.+++++.+ .+..++.....+.+.+ ..+.||+||+|||++|..++....+
T Consensus 57 ~~-----------~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~d~lviAtG~~p~~p~i~g~~ 122 (384)
T 2v3a_A 57 DA-----------DGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGE---EEVRYRDLVLAWGAEPIRVPVEGDA 122 (384)
T ss_dssp CH-----------HHHEEECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETT---EEEECSEEEECCCEEECCCCCBSTT
T ss_pred CH-----------HHhhccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECC---cEEECCEEEEeCCCCcCCCCCCCcC
Confidence 00 1111 12244566789998876 4566665434454443 4699999999999988643322222
Q ss_pred CceEecchhhcccc------CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-CCHHHHHHHHHHHHhcCc
Q 010573 198 EKRIVSSTGALALN------EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 198 ~~~~~~~~~~~~~~------~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-~d~~~~~~~~~~l~~~Gv 270 (507)
...+++..+...+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus 123 ~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv 202 (384)
T 2v3a_A 123 QDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGV 202 (384)
T ss_dssp TTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTC
T ss_pred cCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCC
Confidence 23466665544322 23899999999999999999999999999999999988876 589999999999999999
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
+++++++|++++.+++++.+++. +++++++|.||+|+|++|++++ ++..|++++ +| |.||+++||+.|+||
T Consensus 203 ~i~~~~~v~~i~~~~~~~~v~~~-----~g~~i~~d~vv~a~G~~p~~~l--~~~~g~~~~-~g-i~vd~~~~t~~~~Iy 273 (384)
T 2v3a_A 203 RFHLGPVLASLKKAGEGLEAHLS-----DGEVIPCDLVVSAVGLRPRTEL--AFAAGLAVN-RG-IVVDRSLRTSHANIY 273 (384)
T ss_dssp EEEESCCEEEEEEETTEEEEEET-----TSCEEEESEEEECSCEEECCHH--HHHTTCCBS-SS-EEECTTCBCSSTTEE
T ss_pred EEEeCCEEEEEEecCCEEEEEEC-----CCCEEECCEEEECcCCCcCHHH--HHHCCCCCC-CC-EEECCCCCCCCCCEE
Confidence 99999999999887777777764 4568999999999999999974 677888887 47 999999999999999
Q ss_pred EecCCCC--CC--CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcC-CCeeeecCCHHHHHHcCCCEEEEEEecCcc
Q 010573 351 AIGDVIP--GP--MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTH-PEVASVGKTEEQVKELGVEYRVGKFPFLAN 425 (507)
Q Consensus 351 A~GD~a~--~~--~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~ 425 (507)
|+|||+. .+ ..+..|..||+.+|+||+|...+++|..+|+++|+. +++..+|.+... .
T Consensus 274 A~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~-----------------~ 336 (384)
T 2v3a_A 274 ALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPACPLVVSPPPRGM-----------------D 336 (384)
T ss_dssp ECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECCTTSCEEEECCCTTC-----------------C
T ss_pred EeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCeeEEEecCCCCC-----------------C
Confidence 9999984 22 357789999999999999987778888999999987 588888876531 0
Q ss_pred cchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHH
Q 010573 426 SRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAV 467 (507)
Q Consensus 426 ~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~ 467 (507)
.++....++.+|.|++++ ++++|+|++++|+++.|+++.+.
T Consensus 337 ~~~~~~~~~~g~~~~~~~-~~~~i~G~~~~g~~a~e~~~~~~ 377 (384)
T 2v3a_A 337 GQWLVEGSGTDLKVLCRD-TAGRVIGYALTGAAVNEKLALNK 377 (384)
T ss_dssp CEEEEEEETTEEEEEEEC-TTSCEEEEEEEGGGGGGHHHHHT
T ss_pred ceEEEEecCCcEEEEEEc-cCCEEEEEEEECcchHHHHHHHH
Confidence 111122345689999887 68999999999999999887664
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=384.00 Aligned_cols=361 Identities=19% Similarity=0.302 Sum_probs=280.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.+..+|+|||||+||++||..|++.+.+|+|||+++.++... ..+...+. ..........
T Consensus 7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~--------------~~l~~~l~-----g~~~~~~l~~- 66 (385)
T 3klj_A 7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYR--------------PRLNEIIA-----KNKSIDDILI- 66 (385)
T ss_dssp -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCG--------------GGHHHHHH-----SCCCGGGTBS-
T ss_pred cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCccc--------------ChhhHHHc-----CCCCHHHccC-
Confidence 345799999999999999999977899999999987654310 00101000 0111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~ 197 (507)
...+++++.+++++.+ ++..+|.+...|.+.+| .++.||+||||||++|.. +||..
T Consensus 67 -----------------~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~~~yd~lvlAtG~~p~~p~i~G~~-- 125 (385)
T 3klj_A 67 -----------------KKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSG--EKIKYEKLIIASGSIANKIKVPHAD-- 125 (385)
T ss_dssp -----------------SCHHHHHHTTCEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCTTCS--
T ss_pred -----------------CCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEecCCCcCCCCCCCCC--
Confidence 1235667789999988 58888887778888888 689999999999998854 44543
Q ss_pred CceEec---chhhccccC---CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-CCHHHHHHHHHHHHhcCc
Q 010573 198 EKRIVS---STGALALNE---VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 198 ~~~~~~---~~~~~~~~~---~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-~d~~~~~~~~~~l~~~Gv 270 (507)
.+++ .+++..+.. .+++++|||+|.+|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus 126 --~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV 203 (385)
T 3klj_A 126 --EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGI 203 (385)
T ss_dssp --CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTC
T ss_pred --CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCC
Confidence 3443 445444433 2799999999999999999999999999999999999875 899999999999999999
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
++++++.++++ ++++++|.||+|+|++|++++ ++.+|++.+ +| |.||+++||+.|+||
T Consensus 204 ~~~~~~~v~~i------------------g~~~~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g-i~vd~~~~t~~~~Iy 261 (385)
T 3klj_A 204 KIYTNSNFEEM------------------GDLIRSSCVITAVGVKPNLDF--IKDTEIASK-RG-ILVNDHMETSIKDIY 261 (385)
T ss_dssp EEECSCCGGGC------------------HHHHHHSEEEECCCEEECCGG--GTTSCCCBS-SS-EEECTTCBCSSTTEE
T ss_pred EEEeCCEEEEc------------------CeEEecCeEEECcCcccChhh--hhhcCCCcC-CC-EEECCCcccCCCCEE
Confidence 99999887665 246889999999999999987 577788876 34 999999999999999
Q ss_pred EecCCCC----CCCcHhHHHHHHHHHHHHHcCCCCCCCCCC-ccEEEE--cCCCeeeecCCHHHHHHcCCCEEEEEEecC
Q 010573 351 AIGDVIP----GPMLAHKAEEDGVACVEFLAGKHGHVDYDK-VPGVVY--THPEVASVGKTEEQVKELGVEYRVGKFPFL 423 (507)
Q Consensus 351 A~GD~a~----~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~-~p~~~~--~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~ 423 (507)
|+|||+. .+.++..|..||+.||.||+|.... |.. .|++++ ++++++++|+++.+. .+. +..
T Consensus 262 A~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~--~~~~~~~~~~~~~~~~~~~~G~~~~~~----~~~-~~~---- 330 (385)
T 3klj_A 262 ACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDAS--YSEIIPSPILKVSGISIISCGDIENNK----PSK-VFR---- 330 (385)
T ss_dssp ECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCCCC--CCCCCCCCEEEETTEEEEEESCCTTCC----CSE-EEE----
T ss_pred EEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCCcC--CCCCCCcEEEEeCCCcEEEEcCCCCCC----CeE-EEE----
Confidence 9999996 3668999999999999999987643 443 466554 788999999998641 111 110
Q ss_pred cccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHH
Q 010573 424 ANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495 (507)
Q Consensus 424 ~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~ 495 (507)
..+..+|.|+++ ++|+|+|++++|+.+... .+..+|+++.++++| ||++|+|.+
T Consensus 331 -------~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~~--~~~~~i~~~~~~~~~-------~~~~E~~~~ 384 (385)
T 3klj_A 331 -------STQEDKYIVCML--KENKIDAAAVIGDVSLGT--KLKKAIDSSKSFDNI-------SSLDAILNN 384 (385)
T ss_dssp -------EECSSCEEEEEE--ETTEEEEEEEESCHHHHH--HHHHHHHTTCBCSCC-------SCHHHHHTT
T ss_pred -------ECCCCeEEEEEE--ECCEEEEEEEECCcHHHH--HHHHHHHcCCCcccc-------cCHHHHHhh
Confidence 123457999998 479999999999966554 689999999998888 999999864
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=370.65 Aligned_cols=333 Identities=24% Similarity=0.339 Sum_probs=249.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.|++|||||+||++||..|++.| +|+|||+++..+. ++.++. .. +. ..+.......
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~---------~~~~l~-----~~----~~-g~~~~~~~~~---- 64 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYY---------SKPMLS-----HY----IA-GFIPRNRLFP---- 64 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCC---------CSTTHH-----HH----HT-TSSCGGGGCS----
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCcc---------ccchhH-----HH----Hh-CCCCHHHhcc----
Confidence 59999999999999999999999 9999999654321 010100 00 00 0011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
...+++++.+++++.+ .+..+|++...|. .++ .++.||+||||||++|..++... ...++
T Consensus 65 --------------~~~~~~~~~~v~~~~g~~v~~id~~~~~V~-~~g--~~~~~d~lViATGs~p~~p~i~G--~~~v~ 125 (367)
T 1xhc_A 65 --------------YSLDWYRKRGIEIRLAEEAKLIDRGRKVVI-TEK--GEVPYDTLVLATGARAREPQIKG--KEYLL 125 (367)
T ss_dssp --------------SCHHHHHHHTEEEECSCCEEEEETTTTEEE-ESS--CEEECSEEEECCCEEECCCCSBT--GGGEE
T ss_pred --------------CCHHHHHhCCcEEEECCEEEEEECCCCEEE-ECC--cEEECCEEEECCCCCCCCCCCCC--cCCEE
Confidence 1124456678999988 4788887766666 556 67999999999999885433211 22344
Q ss_pred cc---hhhccccC---CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 203 SS---TGALALNE---VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 203 ~~---~~~~~~~~---~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
+. .++..+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++ +++++.+.+.+.+++.||++++++
T Consensus 126 ~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~ 204 (367)
T 1xhc_A 126 TLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNS 204 (367)
T ss_dssp CCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSC
T ss_pred EEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCC
Confidence 43 44444322 258999999999999999999999999999999999988 999999999999999999999999
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCC
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a 356 (507)
++++++ .+. +++. +++ +++|.|++|+|++|++++ ++..|++.+ +| |.||+++||+.|+|||+|||+
T Consensus 205 ~v~~i~--~~~--v~~~-----~g~-i~~D~vi~a~G~~p~~~l--l~~~gl~~~-~g-i~Vd~~~~t~~~~IyA~GD~a 270 (367)
T 1xhc_A 205 ELLEAN--EEG--VLTN-----SGF-IEGKVKICAIGIVPNVDL--ARRSGIHTG-RG-ILIDDNFRTSAKDVYAIGDCA 270 (367)
T ss_dssp CEEEEC--SSE--EEET-----TEE-EECSCEEEECCEEECCHH--HHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGE
T ss_pred EEEEEE--eeE--EEEC-----CCE-EEcCEEEECcCCCcCHHH--HHhCCCCCC-CC-EEECCCcccCCCCEEEeEeee
Confidence 999996 333 4443 456 999999999999999984 677888876 34 999999999999999999998
Q ss_pred CC----CCcHhHHHHHHHHHHHHHcCCCCCCCCCCccE--EEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhh
Q 010573 357 PG----PMLAHKAEEDGVACVEFLAGKHGHVDYDKVPG--VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKA 430 (507)
Q Consensus 357 ~~----~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (507)
.. +.+++.|.+||+.||.||++...++++ ..|. +.|++|+++++|+++.++. + +
T Consensus 271 ~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~----~-------~-------- 330 (367)
T 1xhc_A 271 EYSGIIAGTAKAAMEQARVLADILKGEPRRYNF-KFRSTVFKFGKLQIAIIGNTKGEGK----W-------I-------- 330 (367)
T ss_dssp EBTTBCCCSHHHHHHHHHHHHHHHTTCCCCCCS-SCCEEEEEETTEEEEEEECCSSCEE----E-------E--------
T ss_pred ecCCCCccHHHHHHHHHHHHHHHhcCCCccCCC-CCCceEEEECCceEEEECCCCCCCc----c-------c--------
Confidence 42 468999999999999999987644443 2343 4789999999999988421 1 0
Q ss_pred cCCcceEEEEEEECCCCeEEEEEEECCChH
Q 010573 431 IDDAEGIVKILAEKETDKILGVHIMAPNAG 460 (507)
Q Consensus 431 ~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~ 460 (507)
.+|+|++++ +++|+|++++|+.+.
T Consensus 331 ----~~~~k~~~~--~~~ilG~~~~g~~~~ 354 (367)
T 1xhc_A 331 ----EDNTKVFYE--NGKIIGAVVFNDIRK 354 (367)
T ss_dssp ----ETTEEEEC-------CEEEEESCHHH
T ss_pred ----ceEEEEEEE--CCEEEEEEEECChHH
Confidence 468999996 599999999998653
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=359.54 Aligned_cols=364 Identities=20% Similarity=0.254 Sum_probs=270.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC--cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
..+||+|||||+||++||.+|++.|. +|+|||+++.++.. .+..++.+.. .. . .....+
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~----~~~~~~~~~~-------------~~-~-~~~~~~ 66 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD----RPPLSKDFMA-------------HG-D-AEKIRL 66 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC----SGGGGTHHHH-------------HC-C-GGGSBC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCccc----CCCCCHHHhC-------------CC-c-hhhhhH
Confidence 45899999999999999999999987 59999997654321 1111111100 00 0 000000
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--C-CCCc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--L-PGIT 195 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~-pg~~ 195 (507)
. ++++.+++++.+. +..++.....|.+.+| ..+.||+||+|||++|.. + ||..
T Consensus 67 --------------------~-~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~i~~G~~ 123 (408)
T 2gqw_A 67 --------------------D-CKRAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPRALPTLQGAT 123 (408)
T ss_dssp --------------------C-CTTSCSCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGGGTTCS
T ss_pred --------------------H-HHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCccCCCC
Confidence 0 3456789999985 7888876666777777 579999999999998853 3 5543
Q ss_pred cCCce-Eecchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCc
Q 010573 196 IDEKR-IVSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 196 ~~~~~-~~~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv 270 (507)
.+.. +.+.+++..+. ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||
T Consensus 124 -~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV 202 (408)
T 2gqw_A 124 -MPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGV 202 (408)
T ss_dssp -SCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTC
T ss_pred -CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCc
Confidence 2221 23455554443 2379999999999999999999999999999999999887 5899999999999999999
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
+++++++|++++ + + .+++. +++++++|.||+|+|++|++++ ++..|++++ +| |.||+++||+.|+||
T Consensus 203 ~i~~~~~v~~i~-~-~--~v~~~-----~g~~i~~D~vi~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~~~t~~~~Iy 269 (408)
T 2gqw_A 203 DLRFERSVTGSV-D-G--VVLLD-----DGTRIAADMVVVGIGVLANDAL--ARAAGLACD-DG-IFVDAYGRTTCPDVY 269 (408)
T ss_dssp EEEESCCEEEEE-T-T--EEEET-----TSCEEECSEEEECSCEEECCHH--HHHHTCCBS-SS-EECCTTCBCSSTTEE
T ss_pred EEEeCCEEEEEE-C-C--EEEEC-----CCCEEEcCEEEECcCCCccHHH--HHhCCCCCC-CC-EEECCCCccCCCCEE
Confidence 999999999997 3 3 45553 4568999999999999999886 677788886 45 999999999999999
Q ss_pred EecCCCCCC----------CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEE--EcCCCeeeecCCHHHHHHcCCCEEEE
Q 010573 351 AIGDVIPGP----------MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVEYRVG 418 (507)
Q Consensus 351 A~GD~a~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~vG~~~~~~~~~~~~~~~~ 418 (507)
|+|||+..+ ..+..|..||+.||.||++... .+|..+|+++ +.+++++++|+ +. ..++.+
T Consensus 270 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~p~~~~~~~~~~~~~~G~-~~-----~~~~~~- 341 (408)
T 2gqw_A 270 ALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTA-PGYAELPWYWSDQGALRIQVAGL-AS-----GDEEIV- 341 (408)
T ss_dssp ECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTS-CCCCCCCEEEEEETTEEEEEEEC-SC-----CSEEEE-
T ss_pred EEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCC-CcCCCCCeEEEEECCceEEEECC-CC-----CCEEEE-
Confidence 999999653 2678999999999999998754 2677788765 34578999998 21 111110
Q ss_pred EEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCH--HHHhc
Q 010573 419 KFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASS--EDIAR 481 (507)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~--~~l~~ 481 (507)
. . .......+|.+++++ +++|+|++++|+.+ .+..+..+|+.+.++ .+|.+
T Consensus 342 ~----~----~~~~~~~~~~~~~~~--~~~l~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~l~~ 394 (408)
T 2gqw_A 342 R----G----EVSLDAPKFTLIELQ--KGRIVGATCVNNAR--DFAPLRRLLAVGAKPDRAALAD 394 (408)
T ss_dssp E----S----CCCSSSCCEEEEEEE--TTEEEEEEEESCHH--HHHHHHHHHHTTCCCCHHHHHC
T ss_pred E----c----cCCCCCCeEEEEEEe--CCEEEEEEEECChH--HHHHHHHHHHCCCCCChHHhcC
Confidence 0 0 000114568777774 79999999999964 357799999998854 44443
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=364.26 Aligned_cols=379 Identities=19% Similarity=0.224 Sum_probs=280.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.+||+|||||+||++||..|++.|. +|+|||+++.+.... +..++.+.. ..........
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~----~~l~~~~~~--------------~~~~~~~~~~- 64 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL----PPLSKAYLA--------------GKATAESLYL- 64 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS----GGGGTTTTT--------------TCSCSGGGBS-
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcC----CCCcHHHhC--------------CCCChHHhcc-
Confidence 4799999999999999999999998 799999965432210 000110000 0000000001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~ 197 (507)
...+++++.+++++.+. +..++.....|.+.+| ..+.||+||+|||++|.. +||....
T Consensus 65 -----------------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~p~~~~i~G~~~~ 125 (431)
T 1q1r_A 65 -----------------RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDG--RALDYDRLVLATGGRPRPLPVASGAVG 125 (431)
T ss_dssp -----------------SCHHHHHHTTEEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGGGTTHHH
T ss_pred -----------------cCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEcCCCCccCCCCCCcccC
Confidence 01245567899999874 6777765556777777 679999999999998853 3454322
Q ss_pred C---ce-Eecchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcC
Q 010573 198 E---KR-IVSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQK 269 (507)
Q Consensus 198 ~---~~-~~~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~G 269 (507)
+ .. +.+.+++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+.+++.|
T Consensus 126 ~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 205 (431)
T 1q1r_A 126 KANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAG 205 (431)
T ss_dssp HSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCC
Confidence 2 11 23455554443 3489999999999999999999999999999999998877 489999999999999999
Q ss_pred cEEEcCceEEEEEE--cCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCC
Q 010573 270 MKFMLKTKVVGVDL--SGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNI 346 (507)
Q Consensus 270 v~i~~~~~v~~i~~--~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~ 346 (507)
|++++++++++++. +++.+ .+++. +++++++|.||+|+|++|++++ ++..|++++ +| |.||+++||+.
T Consensus 206 V~i~~~~~v~~i~~~~~~~~v~~v~~~-----~G~~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd~~~~ts~ 276 (431)
T 1q1r_A 206 VDIRTGTQVCGFEMSTDQQKVTAVLCE-----DGTRLPADLVIAGIGLIPNCEL--ASAAGLQVD-NG-IVINEHMQTSD 276 (431)
T ss_dssp CEEECSCCEEEEEECTTTCCEEEEEET-----TSCEEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EECCTTSBCSS
T ss_pred eEEEeCCEEEEEEeccCCCcEEEEEeC-----CCCEEEcCEEEECCCCCcCcch--hhccCCCCC-CC-EEECCCcccCC
Confidence 99999999999987 44554 46654 4578999999999999999885 677888886 34 99999999999
Q ss_pred CCeEEecCCCCCCC----------cHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEE--cCCCeeeecCCHHHHHHcCCC
Q 010573 347 PGVYAIGDVIPGPM----------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVY--THPEVASVGKTEEQVKELGVE 414 (507)
Q Consensus 347 ~~IyA~GD~a~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~--~~~~~~~vG~~~~~~~~~~~~ 414 (507)
|+|||+|||+..+. .+..|..||+.||.||+|... .|..+|+++. .++++..+|+++.. .+
T Consensus 277 ~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~G~~~~~-----~~ 349 (431)
T 1q1r_A 277 PLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP--RDEAAPWFWSDQYEIGLKMVGLSEGY-----DR 349 (431)
T ss_dssp TTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC--CCCCCCEEEEEETTEEEEEEECCTTC-----SE
T ss_pred CCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC--CCCCCCeEEEEECCceEEEEeCCCCC-----CE
Confidence 99999999996532 578899999999999998753 5777888642 34678899987631 11
Q ss_pred EEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcCcCCCCC
Q 010573 415 YRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPT 488 (507)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~ 488 (507)
+.+.. ..+...|.+++. ++++|+|++++|+.+.+.+.....+++.+++.++|.+..+....
T Consensus 350 ~~~~~-----------~~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~ 410 (431)
T 1q1r_A 350 IIVRG-----------SLAQPDFSVFYL--QGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKE 410 (431)
T ss_dssp EEEEE-----------ETTTTEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCTTSCHHH
T ss_pred EEEEc-----------cCCCCeEEEEEE--eCCEEEEEEEECChHHHHHHHHHHHCCCCCCHHHhhCCCCCHHH
Confidence 11100 122345766654 57999999999998888887777777888899988877654433
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=351.92 Aligned_cols=370 Identities=21% Similarity=0.320 Sum_probs=275.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCc--EEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLK--TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~--V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
.++||+|||||+||++||.+|++.|++ |+|||+++.++..... + ++. +............
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~---l-~~~--------------~~~~~~~~~~~~~ 69 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPP---L-SKE--------------YLAREKTFERICI 69 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGG---G-GTT--------------TTTTSSCSGGGBS
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCccc---C-CHH--------------HHcCCCCHHHhcc
Confidence 458999999999999999999999987 9999997765432100 0 000 0000000111111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCcc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITI 196 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~ 196 (507)
....++++.+++++.+ .+..++.....+.+.++ ..+.||+||+|||++|.. +|+...
T Consensus 70 ------------------~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i~g~~~ 129 (415)
T 3lxd_A 70 ------------------RPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDG--SAIEYGKLIWATGGDPRRLSCVGADL 129 (415)
T ss_dssp ------------------SCHHHHHHTTEEEEETCCEEEEETTTTEEEETTS--CEEEEEEEEECCCEECCCCBTTSSCC
T ss_pred ------------------CCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCC--CEEEeeEEEEccCCccCCCCCCCccc
Confidence 1135567789999998 78888888778888777 689999999999998854 455442
Q ss_pred CCce-Eecchhhcccc---CC-CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCc
Q 010573 197 DEKR-IVSSTGALALN---EV-PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 197 ~~~~-~~~~~~~~~~~---~~-~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv 270 (507)
.+.. +.+..++..+. .. +++++|||+|++|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||
T Consensus 130 ~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV 209 (415)
T 3lxd_A 130 AGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGV 209 (415)
T ss_dssp BTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTC
T ss_pred cCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCC
Confidence 2221 22444444332 23 89999999999999999999999999999999999877 5899999999999999999
Q ss_pred EEEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCe
Q 010573 271 KFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~I 349 (507)
++++++.|++++.+++++ .+++. +++++++|.||+|+|++|++++ ++..|++.+ +| |.||++++|+.|+|
T Consensus 210 ~i~~~~~v~~i~~~~~~v~~v~l~-----dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~~~~t~~~~i 280 (415)
T 3lxd_A 210 DLRTGAAMDCIEGDGTKVTGVRMQ-----DGSVIPADIVIVGIGIVPCVGA--LISAGASGG-NG-VDVDEFCRTSLTDV 280 (415)
T ss_dssp EEEETCCEEEEEESSSBEEEEEES-----SSCEEECSEEEECSCCEESCHH--HHHTTCCCS-SS-EECCTTCBCSSTTE
T ss_pred EEEECCEEEEEEecCCcEEEEEeC-----CCCEEEcCEEEECCCCccChHH--HHhCCCCcC-CC-EEECCCCCcCCCCE
Confidence 999999999998876665 46664 5678999999999999999976 677788887 34 99999999999999
Q ss_pred EEecCCCCCCC-----------cHhHHHHHHHHHHHHHcCCCCCCCCCCccEEE--EcCCCeeeecCCHHHHHHcCCCEE
Q 010573 350 YAIGDVIPGPM-----------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVEYR 416 (507)
Q Consensus 350 yA~GD~a~~~~-----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~vG~~~~~~~~~~~~~~ 416 (507)
||+|||+..+. .+..|..||+.||+||+|.. ..|..+|+++ +++..+..+|+++.. -++
T Consensus 281 yA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~-----~~~- 352 (415)
T 3lxd_A 281 YAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP--VPYKATPWFWSNQYDLKLQTVGLSTGH-----DNA- 352 (415)
T ss_dssp EECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTC-----SEE-
T ss_pred EEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCC--CCCCCCCeeEeeeCCcEEEEEeCCCCC-----CEE-
Confidence 99999996543 46899999999999999876 3577788754 345677888887531 111
Q ss_pred EEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCC--HHHHh
Q 010573 417 VGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDAS--SEDIA 480 (507)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~--~~~l~ 480 (507)
+.. ...+...|.++++ ++++|+|+..+|+. .....+..+|+.+.+ .++|+
T Consensus 353 ~~~----------~~~~~~~~~~~~~--~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 404 (415)
T 3lxd_A 353 VLR----------GDPATRSFSVVYL--KGGKVVALDCVNMV--KDYVQGKKLVEARAQIAPEQLA 404 (415)
T ss_dssp EEE----------EEGGGTEEEEEEE--ETTEEEEEEEESCH--HHHHHHHHHHHHTCCCCHHHHT
T ss_pred EEE----------ecCCCCeEEEEEE--ECCEEEEEEEECCh--HHHHHHHHHHHCCCCCCHHHhc
Confidence 111 0112346888888 47999999999983 334557778876654 44454
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=355.26 Aligned_cols=368 Identities=21% Similarity=0.306 Sum_probs=273.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCc--EEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLK--TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~--V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+||+|||||+||++||..|++.|++ |+|||+++..+... |. + . ... .......... ...
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~------~~--l-~-~~~--------~~g~~~~~~~-~~~ 63 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDR------PS--L-S-KAV--------LDGSLERPPI-LAE 63 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCS------GG--G-G-THH--------HHTSSSSCCB-SSC
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCC------cc--c-c-HHH--------hCCCCCHHHh-cCC
Confidence 4899999999999999999999987 99999977654320 00 0 0 000 0011111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDE 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~~ 198 (507)
.+++++.+++++.+ ++..++.....+.+.+| ..+.||+||||||++|.. +||....+
T Consensus 64 ------------------~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~ipG~~~~~ 123 (410)
T 3ef6_A 64 ------------------ADWYGEARIDMLTGPEVTALDVQTRTISLDDG--TTLSADAIVIATGSRARTMALPGSQLPG 123 (410)
T ss_dssp ------------------TTHHHHTTCEEEESCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCTTTTSTT
T ss_pred ------------------HHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEccCCcccCCCCCCccccc
Confidence 23456779999999 78888888778887777 689999999999998854 45544222
Q ss_pred ce-Eecchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCcEEE
Q 010573 199 KR-IVSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFM 273 (507)
Q Consensus 199 ~~-~~~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv~i~ 273 (507)
.. +.+..++..+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||+++
T Consensus 124 v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 203 (410)
T 3ef6_A 124 VVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVE 203 (410)
T ss_dssp EECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEE
T ss_pred eEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEE
Confidence 22 22444544433 3489999999999999999999999999999999998876 4789999999999999999999
Q ss_pred cCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEec
Q 010573 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353 (507)
Q Consensus 274 ~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~G 353 (507)
+++.|++++.++....+++. +++++++|.||+|+|++|++++ ++..|++++ + +|.||++++|+.|+|||+|
T Consensus 204 ~~~~v~~i~~~~~~~~v~~~-----dg~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~-gi~vd~~~~t~~~~IyA~G 274 (410)
T 3ef6_A 204 LGTGVVGFSGEGQLEQVMAS-----DGRSFVADSALICVGAEPADQL--ARQAGLACD-R-GVIVDHCGATLAKGVFAVG 274 (410)
T ss_dssp CSCCEEEEECSSSCCEEEET-----TSCEEECSEEEECSCEEECCHH--HHHTTCCBS-S-SEECCTTSBCSSTTEEECG
T ss_pred eCCEEEEEeccCcEEEEEEC-----CCCEEEcCEEEEeeCCeecHHH--HHhCCCccC-C-eEEEccCeeECCCCEEEEE
Confidence 99999999876544456664 5678999999999999999976 677888887 3 4999999999999999999
Q ss_pred CCCCCCC---------cHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEE--cCCCeeeecCCHHHHHHcCCCEEEEEEec
Q 010573 354 DVIPGPM---------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVY--THPEVASVGKTEEQVKELGVEYRVGKFPF 422 (507)
Q Consensus 354 D~a~~~~---------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~--~~~~~~~vG~~~~~~~~~~~~~~~~~~~~ 422 (507)
||+..+. .+..|..||+.||+||+|.. ..|..+|+++. ++..+..+|+++.. .+. +..
T Consensus 275 D~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~-----~~~-~~~--- 343 (410)
T 3ef6_A 275 DVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKN--VSAPQLPVSWTEIAGHRMQMAGDIEGP-----GDF-VSR--- 343 (410)
T ss_dssp GGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCC--CCCCBCCEEEEEETTEEEEEESCSSSS-----SEE-EEE---
T ss_pred cceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCC--CCCCCCCeeEEEECCceEEEEcCCCCC-----CEE-EEE---
Confidence 9996542 48999999999999999875 46777887653 34577888876532 011 000
Q ss_pred CcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCC--CHHHHhc
Q 010573 423 LANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDA--SSEDIAR 481 (507)
Q Consensus 423 ~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~--~~~~l~~ 481 (507)
...+...|.++++ ++++|+|++++|+. .....+..+|+.+. +.++|++
T Consensus 344 -------~~~~~~~~~~~~~--~~~~l~g~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~ 393 (410)
T 3ef6_A 344 -------GMPGSGAALLFRL--QERRIQAVVAVDAP--RDFALATRLVEARAAIEPARLAD 393 (410)
T ss_dssp -------SCTTSSSEEEEEE--ETTEEEEEEEESCH--HHHHHHHHHHHHTCBCCHHHHHC
T ss_pred -------eeCCCCeEEEEEE--ECCEEEEEEEECCh--HHHHHHHHHHhCCCCCCHHHhcC
Confidence 0112334777777 57999999999993 33445777777655 4555553
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=344.05 Aligned_cols=362 Identities=22% Similarity=0.289 Sum_probs=272.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+||+|||||+||++||.+|++.|+ +|+|||+++..+..... + ++. +.............
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~---l-~~~--------------~l~~~~~~~~~~~~- 62 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPP---L-SKA--------------YLKSGGDPNSLMFR- 62 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGG---G-GTG--------------GGGSCCCTTSSBSS-
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCcc---C-CHH--------------HHCCCCCHHHccCC-
Confidence 589999999999999999999998 89999997754332000 0 000 00011111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCccCCc
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGITIDEK 199 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~~~~~ 199 (507)
...++.+.+++++...+..++.....+.+.+| ..+.||+||+|||++|.. +|+.. ..
T Consensus 63 -----------------~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~i~g~~--~~ 121 (404)
T 3fg2_P 63 -----------------PEKFFQDQAIELISDRMVSIDREGRKLLLASG--TAIEYGHLVLATGARNRMLDVPNAS--LP 121 (404)
T ss_dssp -----------------CHHHHHHTTEEEECCCEEEEETTTTEEEESSS--CEEECSEEEECCCEEECCCCSTTTT--ST
T ss_pred -----------------CHHHHHhCCCEEEEEEEEEEECCCCEEEECCC--CEEECCEEEEeeCCCccCCCCCCCC--CC
Confidence 13456678999988778888887777888787 689999999999998753 45543 23
Q ss_pred eEe---cchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCcEE
Q 010573 200 RIV---SSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 200 ~~~---~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv~i 272 (507)
.++ +..++..+. ..+++++|||+|.+|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||++
T Consensus 122 ~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i 201 (404)
T 3fg2_P 122 DVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRM 201 (404)
T ss_dssp TEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEE
T ss_pred cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEE
Confidence 344 333443332 3489999999999999999999999999999999999876 589999999999999999999
Q ss_pred EcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 273 MLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
++++.|++++.+++.+. +++. +++++++|.||+|+|++|++++ ++..|++.+ +| |.||++++|+.|+|||
T Consensus 202 ~~~~~v~~i~~~~~~v~~V~~~-----dG~~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~G-i~vd~~~~t~~~~iya 272 (404)
T 3fg2_P 202 HYGVRATEIAAEGDRVTGVVLS-----DGNTLPCDLVVVGVGVIPNVEI--AAAAGLPTA-AG-IIVDQQLLTSDPHISA 272 (404)
T ss_dssp ECSCCEEEEEEETTEEEEEEET-----TSCEEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EEECTTSBCSSTTEEE
T ss_pred EECCEEEEEEecCCcEEEEEeC-----CCCEEEcCEEEECcCCccCHHH--HHhCCCCCC-CC-EEECCCcccCCCCEEE
Confidence 99999999988766654 6664 5678999999999999999976 677888887 35 9999999999999999
Q ss_pred ecCCCCCCC----------cHhHHHHHHHHHHHHHcCCCCCCCCCCccEEE--EcCCCeeeecCCHHHHHHcCCCEEEEE
Q 010573 352 IGDVIPGPM----------LAHKAEEDGVACVEFLAGKHGHVDYDKVPGVV--YTHPEVASVGKTEEQVKELGVEYRVGK 419 (507)
Q Consensus 352 ~GD~a~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~~~~vG~~~~~~~~~~~~~~~~~ 419 (507)
+|||+..+. .+..|..||+.||.||+|.. ..|..+|+++ +++..+..+|++.. .+-.+..
T Consensus 273 ~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~------~~~~~~~ 344 (404)
T 3fg2_P 273 IGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDA--KPYDGYPWFWSDQGDDKLQIVGLTAG------FDQVVIR 344 (404)
T ss_dssp CGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCC--CCCCCCCEEEEEETTEEEEEEECCTT------CCEEEEE
T ss_pred eecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCC--CCCCCCCceEeEECCcEEEEEeCCCC------CCEEEEE
Confidence 999996432 47899999999999999875 4577788765 34456778887642 1111111
Q ss_pred EecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHHHHHHHCCCCH
Q 010573 420 FPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASS 476 (507)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~~~~i~~~~~~ 476 (507)
...+...|.++++ ++++|+|+..+|+. .....+..+|+.+.++
T Consensus 345 ----------~~~~~~~~~~~~~--~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~ 387 (404)
T 3fg2_P 345 ----------GSVAERSFSAFCY--KAGKLIGIESVNRA--ADHVFGRKILPLDKSV 387 (404)
T ss_dssp ----------EETTTTEEEEEEE--ETTEEEEEEEESCH--HHHHHHHHHTTTTCCC
T ss_pred ----------ecCCCCcEEEEEE--ECCEEEEEEEeCCH--HHHHHHHHHHHcCCCC
Confidence 0123456888888 47999999999983 4455678888876654
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-41 Score=324.42 Aligned_cols=291 Identities=26% Similarity=0.382 Sum_probs=213.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+||||||||++||.+|+++|++|+|||+ +.+||+|.+.+|+|...-.. .....
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~~~~i~~~p~~~----------------------~~~~~ 62 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMANTEEVENFPGFE----------------------MITGP 62 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGGCSCBCCSTTCS----------------------SBCHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeecccccCCcCCcc----------------------ccchH
Confidence 69999999999999999999999999999998 68999999999986421100 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCcc-CC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITI-DE 198 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~-~~ 198 (507)
++ .........+....+..+. ....+.....+...++ .++.||+||||||++|. .+||... ..
T Consensus 63 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~liiAtGs~~~~~~ipG~~~~~~ 129 (312)
T 4gcm_A 63 DL-----------STKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGN--KELTAKAVIIATGAEYKKIGVPGEQELGG 129 (312)
T ss_dssp HH-----------HHHHHHHHHHTTCEEEECCCCEEEECSSCEEEECSS--CEEEEEEEEECCCEEECCCCCTTTTTTBT
T ss_pred HH-----------HHHHHHHHhhccccccceeeeeeeeeecceeeccCC--eEEEeceeEEcccCccCcCCCCChhhhCC
Confidence 11 1112233444555555543 2222322223333444 67999999999999874 4566542 22
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..+.+..........+|+++|||+|++|+|+|..|+++|.+||++++.+++++... ...+.++..++.......+
T Consensus 130 ~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 204 (312)
T 4gcm_A 130 RGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRI-----LQDRAFKNDKIDFIWSHTL 204 (312)
T ss_dssp TTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHH-----HHHHHHHCTTEEEECSEEE
T ss_pred ccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchh-----HHHHHHHhcCcceeeecce
Confidence 33444443333445589999999999999999999999999999999998765322 2345567788998888887
Q ss_pred EEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 279 VGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 279 ~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
......+.... ........++...+++|.|++++|..|+..+ ++..++. +++|+|.||++||||+|||||+|||++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~--~~~~g~~-~~~G~I~vd~~~~Ts~pgIyA~GDv~~ 281 (312)
T 4gcm_A 205 KSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAP--FKDLGIT-NDVGYIVTKDDMTTSVPGIFAAGDVRD 281 (312)
T ss_dssp EEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GGGGTCB-CTTSCBCCCTTSBCSSTTEEECSTTBS
T ss_pred eeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchh--HHhccee-cCCCeEeeCCCCccCCCCEEEEeecCC
Confidence 77766554433 2333344567788999999999999999986 5666665 456899999999999999999999996
Q ss_pred -CCCcHhHHHHHHHHHHHHHc
Q 010573 358 -GPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 358 -~~~~~~~A~~~g~~aa~~i~ 377 (507)
.+.+++.|+.||+.||.||.
T Consensus 282 ~~~~~~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 282 KGLRQIVTATGDGSIAAQSAA 302 (312)
T ss_dssp CSCCSHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 45789999999999999985
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=322.76 Aligned_cols=299 Identities=24% Similarity=0.286 Sum_probs=219.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
|++.|||+||||||||++||.+|+++|++|+|||+ ...||.|.+ ||+|++.+.+.. .+++. .+
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~-~~~gg~~~~-G~~~~~~~i~~~------------~g~~~---~i 63 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEG-FMAGGVAAG-GQLTTTTIIENF------------PGFPN---GI 63 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECC-SSGGGCCTT-CGGGGSSEECCS------------TTCTT---CE
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCcccC-CCcCChHHhhhc------------cCCcc---cC
Confidence 45579999999999999999999999999999998 567888887 888865443211 01110 11
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEE--ecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF--ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT 195 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~ 195 (507)
+..+ +........++.++++....+.. .+.+...+.+.++ .++.||+||||||++|+ .+||..
T Consensus 64 ~~~~-----------l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~liiATG~~~~~~~ipG~~ 130 (314)
T 4a5l_A 64 DGNE-----------LMMNMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEG--KEVLTKSVIIATGATAKRMHVPGED 130 (314)
T ss_dssp EHHH-----------HHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTC--CEEEEEEEEECCCEEECCCCCTTHH
T ss_pred CHHH-----------HHHHHHHHHhhcCcEEEEeEEEEeecCCCceEEEECCC--eEEEEeEEEEcccccccccCCCccc
Confidence 2222 22333455667788877765543 3344455555665 78999999999999874 556654
Q ss_pred cC-CceEecchhhccc--cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 196 ID-EKRIVSSTGALAL--NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 196 ~~-~~~~~~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
.. ...+......... ...+++++|||+|++|+|+|..|+++|.+||++++.+.... ++. ...+.....+++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~--~~~---~~~~~~~~~~~~~ 205 (314)
T 4a5l_A 131 KYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA--SKT---MQERVLNHPKIEV 205 (314)
T ss_dssp HHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHH---HHHHHHTCTTEEE
T ss_pred cccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc--cch---hhhhhhcccceee
Confidence 22 1223333333222 23589999999999999999999999999999998776432 222 2344556778999
Q ss_pred EcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 273 MLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
+....+.++...++.. .+.+.....++++++++|.|++++|++||++++. .++.++++|.+ ||+++|||+|||||
T Consensus 206 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~---~~~~~~~~G~i-v~~~~~Ts~pgIyA 281 (314)
T 4a5l_A 206 IWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLG---GQVKTADDGYI-LTEGPKTSVDGVFA 281 (314)
T ss_dssp ECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT---TSSCBCTTSCB-CCBTTBCSSTTEEE
T ss_pred EeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhc---ccceEcCCeeE-eCCCCccCCCCEEE
Confidence 9999999888765433 3555555566788999999999999999999753 34777877755 89999999999999
Q ss_pred ecCCCCCCC-cHhHHHHHHHHHHHHHc
Q 010573 352 IGDVIPGPM-LAHKAEEDGVACVEFLA 377 (507)
Q Consensus 352 ~GD~a~~~~-~~~~A~~~g~~aa~~i~ 377 (507)
+|||++.+. ++..|+.||+.||.++.
T Consensus 282 ~GDv~~~~~~~~~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 282 CGDVCDRVYRQAIVAAGSGCMAALSCE 308 (314)
T ss_dssp CSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeccCCcchHHHHHHHHHHHHHHHHH
Confidence 999998764 78899999999999874
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=338.84 Aligned_cols=408 Identities=18% Similarity=0.191 Sum_probs=266.9
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCc
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSS 116 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~ 116 (507)
+++..+||+|||||+||++||..|++. +.+|+|||+++.++. ..|.+++.++...... ........++....
T Consensus 7 ~~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y----~r~~lsk~l~~~~~~~--~~~~~~~~~~~~~~ 80 (493)
T 1m6i_A 7 KAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY----MRPPLSKELWFSDDPN--VTKTLRFKQWNGKE 80 (493)
T ss_dssp -CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCB----CSGGGGTGGGCC--CT--HHHHCEEECTTSCE
T ss_pred CCCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC----CCCCCCHHhhcCCccc--hhhccccccccccc
Confidence 345568999999999999999999887 899999999876653 2244455443322100 00000000110000
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHH--HHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCC
Q 010573 117 VEVDLPAMMAQKDKAVSNLTRGIEGL--FKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPG 193 (507)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg 193 (507)
..+.+.... +......+ +.+.+++++.+ .+..+|.....|.+.+| .++.||+||||||++|..+|.
T Consensus 81 ~~~~~~~~~---------~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g--~~i~yd~lviATGs~p~~~~~ 149 (493)
T 1m6i_A 81 RSIYFQPPS---------FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTPRSLSA 149 (493)
T ss_dssp EESBSSCGG---------GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEECCCHH
T ss_pred ccccccchH---------hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCCC
Confidence 000000000 00000001 13468999988 67777766667777777 679999999999999865543
Q ss_pred Ccc------CCce-Eecchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHh----cCCeeEEEcccCccCC-CCCHHHH
Q 010573 194 ITI------DEKR-IVSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWAR----LGSEVTVVEFAADIVP-SMDGEIR 258 (507)
Q Consensus 194 ~~~------~~~~-~~~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~----~g~~Vtlv~~~~~~~~-~~d~~~~ 258 (507)
... .... +.+..++..+. ..+++++|||+|++|+|+|..|.+ .|.+|+++++.+.+++ .+++++.
T Consensus 150 ~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~ 229 (493)
T 1m6i_A 150 IDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLS 229 (493)
T ss_dssp HHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHH
T ss_pred cccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHH
Confidence 221 1111 22444544433 248999999999999999999876 5789999998876654 5788999
Q ss_pred HHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecC-CCCee
Q 010573 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIP 337 (507)
Q Consensus 259 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~G~i~ 337 (507)
+.+.+.+++.||++++++.|++++.+++.+.+++. +++++++|.||+|+|.+|++.+ ++.+|+++++ +|+|.
T Consensus 230 ~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~-----dG~~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~~~~ggi~ 302 (493)
T 1m6i_A 230 NWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLK-----DGRKVETDHIVAAVGLEPNVEL--AKTGGLEIDSDFGGFR 302 (493)
T ss_dssp HHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEET-----TSCEEEESEEEECCCEEECCTT--HHHHTCCBCTTTCSEE
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEEC-----CCCEEECCEEEECCCCCccHHH--HHHcCCccccCCCcEE
Confidence 99999999999999999999999877666667664 4568999999999999999986 6778888875 68999
Q ss_pred cCCCCCCCCCCeEEecCCCCCC---------CcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcC---CCeeeecCCH
Q 010573 338 VNERFATNIPGVYAIGDVIPGP---------MLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTH---PEVASVGKTE 405 (507)
Q Consensus 338 Vd~~~~t~~~~IyA~GD~a~~~---------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~---~~~~~vG~~~ 405 (507)
||++||| .|+|||+|||+..+ ..+..|..||+.||.||++... .|...|+++... ..+..+|...
T Consensus 303 Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~~--~~~~~~~~~s~~~~~~~~~~~g~~~ 379 (493)
T 1m6i_A 303 VNAELQA-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK--PYWHQSMFWSDLGPDVGYEAIGLVD 379 (493)
T ss_dssp CCTTCEE-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC--CCCCCCEEEEESSTTCEEEEEECCC
T ss_pred ECCCccc-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCCC--CcCCcCceeeeeccCcceEEEeccC
Confidence 9999998 59999999999532 2467999999999999998753 456666643221 1223333221
Q ss_pred HHHHHcCCCEEEEEEecCcc-------------cch-----------hh-------------cCCcceEEEEEEECCCCe
Q 010573 406 EQVKELGVEYRVGKFPFLAN-------------SRA-----------KA-------------IDDAEGIVKILAEKETDK 448 (507)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~-------------~~~-----------~~-------------~~~~~~~~k~~~~~~~~~ 448 (507)
......|.. ...... .+. .+ ......|..+++ ++++
T Consensus 380 ~~~~~~G~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 452 (493)
T 1m6i_A 380 SSLPTVGVF-----AKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYL--RDKV 452 (493)
T ss_dssp TTSCEEEEE-----ECCCTTCSHHHHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEE--ETTE
T ss_pred CCcceEEee-----cccccccccccccccccccccccccccccccccccccccccccccccccccCCcEEEEEE--eCCE
Confidence 111111100 000000 000 00 001223566766 4799
Q ss_pred EEEEEEECCChHHHHHHHHHHHHCCCCHHHHhcC
Q 010573 449 ILGVHIMAPNAGELIHEAVLAINYDASSEDIARV 482 (507)
Q Consensus 449 ilG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~ 482 (507)
|+|+..+|.-. .+..+..+|+.+.+++++.++
T Consensus 453 ~~g~~~~~~~~--~~~~~~~li~~~~~~~~~~~~ 484 (493)
T 1m6i_A 453 VVGIVLWNIFN--RMPIARKIIKDGEQHEDLNEV 484 (493)
T ss_dssp EEEEEEESCCS--CHHHHHHHHHHCCBCSCSTTG
T ss_pred EEEEEEecCcc--hHHHHHHHHhCCCCCCCHHHH
Confidence 99999999832 244578888888887777653
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=308.88 Aligned_cols=295 Identities=24% Similarity=0.271 Sum_probs=218.3
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..++||+||||||||+++|..|++.|++|+|||++ .+||.|.+..++... .++.. ..+
T Consensus 6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~------------------~~~~~---~~~ 63 (325)
T 2q7v_A 6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENF------------------PGFPE---PIA 63 (325)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCS------------------TTCSS---CBC
T ss_pred cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccC------------------CCCCC---CCC
Confidence 34589999999999999999999999999999997 789988765432110 00000 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCC---E--EEEEccCCceEEEEeCeEEEccCCCCC--CCCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS---E--VSVDTIEGGNTVVKGKNIIIATGSDVK--SLPG 193 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~---~--~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg 193 (507)
.. .+...+.+.+++.+++++.+.+..++.. . +.+.+.+| ..+.||+||+|||+.|. .+|+
T Consensus 64 ~~-----------~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~~~i~g 130 (325)
T 2q7v_A 64 GM-----------ELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYN--GEYRAKAVILATGADPRKLGIPG 130 (325)
T ss_dssp HH-----------HHHHHHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESS--CEEEEEEEEECCCEEECCCCCTT
T ss_pred HH-----------HHHHHHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCC--CEEEeCEEEECcCCCcCCCCCCC
Confidence 11 1223334556677899888776665432 2 55656666 57999999999999774 3455
Q ss_pred Ccc-CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 194 ITI-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
... ....+++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ++.+. ++.+++.||++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~~~---~~l~~~~gv~i 205 (325)
T 2q7v_A 131 EDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA--NKVAQ---ARAFANPKMKF 205 (325)
T ss_dssp TTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS--CHHHH---HHHHTCTTEEE
T ss_pred hhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc--chHHH---HHHHhcCCceE
Confidence 431 1223444333333344579999999999999999999999999999999886532 43332 23334569999
Q ss_pred EcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEe
Q 010573 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~ 352 (507)
+++++++++..++....+.+.+..+|+..++++|.||+|+|++|++++ ++.. ++++++|+|.||++++|+.|+|||+
T Consensus 206 ~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~-~~~~~~g~i~vd~~~~t~~~~vya~ 282 (325)
T 2q7v_A 206 IWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAF--VKDT-VSLRDDGYVDVRDEIYTNIPMLFAA 282 (325)
T ss_dssp ECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG--GTTT-SCBCTTSCBCCBTTTBCSSTTEEEC
T ss_pred ecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHH--Hhhh-cccCCCccEecCCCCccCCCCEEEe
Confidence 999999999875443356665433445568999999999999999987 4455 7778889999999999999999999
Q ss_pred cCCCCC-CCcHhHHHHHHHHHHHHHcC
Q 010573 353 GDVIPG-PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 353 GD~a~~-~~~~~~A~~~g~~aa~~i~~ 378 (507)
|||+.. +.++..|..||+.||.||..
T Consensus 283 GD~~~~~~~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 283 GDVSDYIYRQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp STTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ecccCccHHHHHHHHHHHHHHHHHHHH
Confidence 999976 67899999999999999974
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=307.93 Aligned_cols=291 Identities=24% Similarity=0.294 Sum_probs=221.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
++||+|||||+||+++|.+|++.|++|+|||++ +||.|.+.+...... +.. ...
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~------------------~~~----~~~-- 68 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYL------------------GLI----EIQ-- 68 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCST------------------TST----TEE--
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccC------------------CCC----CCC--
Confidence 589999999999999999999999999999996 899876533211000 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecC--CEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCcc-C
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITI-D 197 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~--~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~-~ 197 (507)
...+...+.+.+++.+++++...+..++. +.+.+.+.++ ..+.||+||+|||+.|. .+|+... .
T Consensus 69 ---------~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i~g~~~~~ 137 (323)
T 3f8d_A 69 ---------ASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRK--GEFKADSVILGIGVKRRKLGVPGEQEFA 137 (323)
T ss_dssp ---------HHHHHHHHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSS--CEEEEEEEEECCCCEECCCCCTTTTTTB
T ss_pred ---------HHHHHHHHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCC--CEEEcCEEEECcCCCCccCCCCchhhhc
Confidence 11233334556677788888876666543 3566777776 68999999999999874 3455432 1
Q ss_pred CceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCce
Q 010573 198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
...++...........+++++|+|+|.+|+|+|..+.+.|.+|+++++.+++++ ++++ +.+.+++.||+++++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~~~~~gv~~~~~~~ 212 (323)
T 3f8d_A 138 GRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA--QPIY---VETVKKKPNVEFVLNSV 212 (323)
T ss_dssp TTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS--CHHH---HHHHHTCTTEEEECSEE
T ss_pred CCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc--CHHH---HHHHHhCCCcEEEeCCE
Confidence 233433333333344589999999999999999999999999999999988765 3332 33344456999999999
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 278 v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
+++++.+++...+++.+..+|+..++++|.|++|+|++|++++ ++..|++++++|+|.||++++|+.|||||+|||++
T Consensus 213 v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~--~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~ 290 (323)
T 3f8d_A 213 VKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDF--AKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS 290 (323)
T ss_dssp EEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHH--HHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBS
T ss_pred EEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhH--HhhcCeeecCCCcEecCCCceecCCCEEEcceecC
Confidence 9999877655567776544455568999999999999999876 67788999999999999999999999999999998
Q ss_pred C---CCcHhHHHHHHHHHHHHHc
Q 010573 358 G---PMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 358 ~---~~~~~~A~~~g~~aa~~i~ 377 (507)
. +..+..|..||+.||.+|.
T Consensus 291 ~~~~~~~~~~A~~~g~~aa~~i~ 313 (323)
T 3f8d_A 291 AWLGFRQVITAVAQGAVAATSAY 313 (323)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcccceeehhhHHHHHHHHHH
Confidence 5 7899999999999999986
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=302.98 Aligned_cols=293 Identities=23% Similarity=0.255 Sum_probs=218.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+|||+|||||+||+++|..|++.|+ +|+|||+ ..+||.|.+..++.... ++. ..++.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~-~~~gg~~~~~~~~~~~~------------------~~~---~~~~~ 58 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEK-GMPGGQITGSSEIENYP------------------GVK---EVVSG 58 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECS-SSTTCGGGGCSCBCCST------------------TCC---SCBCH
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcC-CCCCcccccccccccCC------------------CCc---ccCCH
Confidence 3799999999999999999999999 9999999 57899887654322100 000 01122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCc-c
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT-I 196 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~-~ 196 (507)
. .+...+.+.+++.+++++..++..++ .+.+.+.+.++ ..+.||+||+|||+.|.. +|+.. .
T Consensus 59 ~-----------~~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~~~~~g~~~~ 125 (311)
T 2q0l_A 59 L-----------DFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDG--KTFEAKSVIIATGGSPKRTGIKGESEY 125 (311)
T ss_dssp H-----------HHHHHHHHHHHTTSCEEECSCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCEEECCCCCBTHHHH
T ss_pred H-----------HHHHHHHHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCC--CEEECCEEEECCCCCCCCCCCCChhhc
Confidence 2 12233345566778988876665543 45566766666 579999999999987743 34432 1
Q ss_pred CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHH-hcCcEEEcC
Q 010573 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLE-KQKMKFMLK 275 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~-~~Gv~i~~~ 275 (507)
.+..+++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++++ .+.+. +.||+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~----~~~l~~~~gv~v~~~ 199 (311)
T 2q0l_A 126 WGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR--CAPIT----LEHAKNNDKIEFLTP 199 (311)
T ss_dssp BTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC--SCHHH----HHHHHTCTTEEEETT
T ss_pred cCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC--CCHHH----HHHHhhCCCeEEEeC
Confidence 123344443333334457999999999999999999999999999999988753 34443 33444 579999999
Q ss_pred ceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCccc----CceecCCCCeecCCCCCCCCCCeE
Q 010573 276 TKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI----GVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 276 ~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~----gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
+++++++.+++++ .+.+....+|+..++++|.|++|+|++|++++ ++.. +++++++|+|.||+++||+.|+||
T Consensus 200 ~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vy 277 (311)
T 2q0l_A 200 YVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAV--LKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLF 277 (311)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGG--GBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEE
T ss_pred CEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhh--hhcccccceeEeccCCCEEeCCccccCCCCeE
Confidence 9999998775554 46665433444568999999999999999887 4455 388888899999999999999999
Q ss_pred EecCCCCC-CCcHhHHHHHHHHHHHHHcC
Q 010573 351 AIGDVIPG-PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 351 A~GD~a~~-~~~~~~A~~~g~~aa~~i~~ 378 (507)
|+|||+.. +.++..|..||+.||.||..
T Consensus 278 a~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 278 AAGDIRIFAPKQVVCAASDGATAALSVIS 306 (311)
T ss_dssp ECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred EcccccCcchHHHHHHHHhHHHHHHHHHH
Confidence 99999976 67999999999999999863
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=301.86 Aligned_cols=290 Identities=26% Similarity=0.382 Sum_probs=219.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+||||||||+++|..|++.|++|+|||+ ..||.|.....++... +.. ..+.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~~~~~~~~~------------------~~~----~~~~- 55 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILDTVDIENYI------------------SVP----KTEG- 55 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGGCCEECCBT------------------TBS----SEEH-
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecccccccccc------------------CcC----CCCH-
Confidence 37999999999999999999999999999976 5788876543322100 000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCC-----EEEEEccCCceEEEEeCeEEEccCCCCC--CCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS-----EVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGI 194 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~-----~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~ 194 (507)
..+...+...+++.+++++.+ ++..++.+ .+.+.+.+| ..+.||+||+|||+.|. .+|+.
T Consensus 56 ----------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~~~~~g~ 123 (310)
T 1fl2_A 56 ----------QKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASG--AVLKARSIIVATGAKWRNMNVPGE 123 (310)
T ss_dssp ----------HHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTS--CEEEEEEEEECCCEEECCCCCTTT
T ss_pred ----------HHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCC--CEEEeCEEEECcCCCcCCCCCCCh
Confidence 122333455667789999988 67777543 567777777 67999999999998774 34554
Q ss_pred c-cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh-cCcEE
Q 010573 195 T-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKMKF 272 (507)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~-~Gv~i 272 (507)
. .....+++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++. +.+.+++ .||++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~----~~~~l~~~~gv~v 197 (310)
T 1fl2_A 124 DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--ADQV----LQDKLRSLKNVDI 197 (310)
T ss_dssp TTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SCHH----HHHHHHTCTTEEE
T ss_pred hhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--ccHH----HHHHHhhCCCeEE
Confidence 3 1123344444333333458999999999999999999999999999999988762 3433 4455666 69999
Q ss_pred EcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 273 MLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
+++++++++..+++.+ .+++.+..+++..++++|.|++|+|++|+++++ +.. ++++++|+|.||+++||+.|+|||
T Consensus 198 ~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l--~~~-l~~~~~g~i~vd~~~~t~~~~vya 274 (310)
T 1fl2_A 198 ILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL--EGA-VERNRMGEIIIDAKCETNVKGVFA 274 (310)
T ss_dssp ESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--TTT-SCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred ecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHH--hcc-ccccCCCcEEcCCCCccCCCCEEE
Confidence 9999999998765554 466655444555689999999999999999864 333 778888999999999999999999
Q ss_pred ecCCCCCC-CcHhHHHHHHHHHHHHHcC
Q 010573 352 IGDVIPGP-MLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 352 ~GD~a~~~-~~~~~A~~~g~~aa~~i~~ 378 (507)
+|||+..+ ..+..|+.||+.||.+|..
T Consensus 275 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 302 (310)
T 1fl2_A 275 AGDCTTVPYKQIIIATGEGAKASLSAFD 302 (310)
T ss_dssp CSTTBSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred eecccCCcchhhhhhHhhHHHHHHHHHH
Confidence 99999865 5789999999999999863
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=301.85 Aligned_cols=294 Identities=23% Similarity=0.331 Sum_probs=217.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
|...+||+|||||+||+++|..|++.|++|+|||+ ..+||.|.+..++... . ++ ...
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~~~~----------------~--~~----~~~ 69 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAEAPLVENY----------------L--GF----KSI 69 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGGCSCBCCB----------------T--TB----SSB
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccccchhhhc----------------C--CC----ccc
Confidence 34468999999999999999999999999999999 6788887655432110 0 00 011
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~ 195 (507)
+.. .+...+.+.+++.+++++.+++..++ .+.+.+.+ ++ ..+.||+||+|||+.|.. +|+..
T Consensus 70 ~~~-----------~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~~~li~AtG~~~~~~~i~g~~ 135 (319)
T 3cty_A 70 VGS-----------ELAKLFADHAANYAKIREGVEVRSIKKTQGGFDIET-ND--DTYHAKYVIITTGTTHKHLGVKGES 135 (319)
T ss_dssp CHH-----------HHHHHHHHHHHTTSEEEETCCEEEEEEETTEEEEEE-SS--SEEEEEEEEECCCEEECCCCCBTTT
T ss_pred CHH-----------HHHHHHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEE-CC--CEEEeCEEEECCCCCcccCCCCChH
Confidence 111 12223345566778988876665554 45555655 44 468999999999987743 34432
Q ss_pred c-CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 010573 196 I-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
. ....++...........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ++. +.+.+++.||++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~--~~~----l~~~l~~~gv~i~~ 209 (319)
T 3cty_A 136 EYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC--ENA----YVQEIKKRNIPYIM 209 (319)
T ss_dssp TTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS--CHH----HHHHHHHTTCCEEC
T ss_pred HhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC--CHH----HHHHHhcCCcEEEc
Confidence 1 1123333333323334579999999999999999999999999999999876532 333 44556688999999
Q ss_pred CceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEec
Q 010573 275 KTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353 (507)
Q Consensus 275 ~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~G 353 (507)
+++++++..+++.+ .+.+.+..+|+..++++|.||+|+|++|++++ ++..|++++++|+|.||++++|+.|+|||+|
T Consensus 210 ~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~~t~~~~vya~G 287 (319)
T 3cty_A 210 NAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSF--LKDSGVKLDERGYIVVDSRQRTSVPGVYAAG 287 (319)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGG--GTTSCCCBCTTSCBCCCTTCBCSSTTEEECS
T ss_pred CCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHH--HhhccccccCCccEeCCCCCccCCCCEEEee
Confidence 99999998765523 45554333444457999999999999999987 4677888888899999999999999999999
Q ss_pred CCCCC-CCcHhHHHHHHHHHHHHHcC
Q 010573 354 DVIPG-PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 354 D~a~~-~~~~~~A~~~g~~aa~~i~~ 378 (507)
||++. +.++..|..||+.||.||..
T Consensus 288 D~~~~~~~~~~~A~~~g~~aa~~i~~ 313 (319)
T 3cty_A 288 DVTSGNFAQIASAVGDGCKAALSLYS 313 (319)
T ss_dssp TTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHH
Confidence 99976 47899999999999999863
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=303.27 Aligned_cols=295 Identities=21% Similarity=0.232 Sum_probs=223.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEE-EecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTC-IEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~l-ie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.++||+|||||+||++||..|++.|++|+| +|+ +.+||.|.+..+++... +.. ....
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~------------------~~~---~~~~ 60 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYP------------------GVA---QVMD 60 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCST------------------TCC---SCBC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCC------------------CCC---CCCC
Confidence 458999999999999999999999999999 999 78899887654432110 000 0111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEe-cC--CEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI-SP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT 195 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-d~--~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~ 195 (507)
. ..+..++...+++.+++++.+++..+ +. ..+.+.+..+. .+.||+||+|||+.|. .+|+..
T Consensus 61 ~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~g~~ 127 (315)
T 3r9u_A 61 G-----------ISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGK--TELAKAVIVCTGSAPKKAGFKGED 127 (315)
T ss_dssp H-----------HHHHHHHHHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSC--EEEEEEEEECCCEEECCCCCBTTT
T ss_pred H-----------HHHHHHHHHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCC--EEEeCEEEEeeCCCCCCCCCCChh
Confidence 1 22333445667778999988876666 44 44664344442 8999999999999774 345544
Q ss_pred c-CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 010573 196 I-DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
. ....+++..........+++++|||+|.+|+|+|..+.+.|.+|+++++.+.+. .++++ +.+.+++.||++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~--~~~~~---~~~~~~~~gv~~~~ 202 (315)
T 3r9u_A 128 EFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR--AAPST---VEKVKKNEKIELIT 202 (315)
T ss_dssp TTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB--SCHHH---HHHHHHCTTEEEEC
T ss_pred hcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC--CCHHH---HHHHHhcCCeEEEe
Confidence 2 224455555554555568999999999999999999999999999999988762 24433 34555788999999
Q ss_pred CceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCC-cccC-ceecCCCCeecCCCCCCCCCCeEE
Q 010573 275 KTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL-DKIG-VETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 275 ~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~g-l~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
++.+++++.+++.+. +++. ..+|+..++++|.|++|+|++|+..++.. +.+| ++++++|+|.||+++||+.|||||
T Consensus 203 ~~~v~~i~~~~~~~~~v~~~-~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a 281 (315)
T 3r9u_A 203 SASVDEVYGDKMGVAGVKVK-LKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFA 281 (315)
T ss_dssp SCEEEEEEEETTEEEEEEEE-CTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred CcEEEEEEcCCCcEEEEEEE-cCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEE
Confidence 999999988775543 5554 23444468999999999999999987532 3465 889999999999999999999999
Q ss_pred ecCCCC-CCCcHhHHHHHHHHHHHHHc
Q 010573 352 IGDVIP-GPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 352 ~GD~a~-~~~~~~~A~~~g~~aa~~i~ 377 (507)
+|||++ .+..+..|+.||+.||.+|.
T Consensus 282 ~GD~~~~~~~~~~~A~~~g~~aa~~i~ 308 (315)
T 3r9u_A 282 AGDLRKDAPKQVICAAGDGAVAALSAM 308 (315)
T ss_dssp CGGGBTTCCCCHHHHHHHHHHHHHHHH
T ss_pred eecccCCchhhhhhHHhhHHHHHHHHH
Confidence 999985 56789999999999999986
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=327.49 Aligned_cols=298 Identities=20% Similarity=0.250 Sum_probs=216.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..+.+|||||||+||+++|.+|++.+++|+|||+++.. .+ .++..+.....++......+
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~----~~----------------~PlL~~va~G~l~~~~i~~p 99 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYF----LF----------------TPLLPSAPVGTVDEKSIIEP 99 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEE----EC----------------GGGGGGTTTTSSCGGGGEEE
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCc----cc----------------ccchhHHhhccccHHHhhhh
Confidence 34568999999999999999999999999999996431 11 11111111222222221112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEcc------------------CCceEEEEeCeEEE
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTI------------------EGGNTVVKGKNIII 182 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~------------------~g~~~~~~~d~lvl 182 (507)
...+ ....+.+++++.+++..+|.+...|.+. .++..++.||+|||
T Consensus 100 ~~~~----------------~~~~~~~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LVi 163 (502)
T 4g6h_A 100 IVNF----------------ALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLIS 163 (502)
T ss_dssp HHHH----------------HTTCSSCEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEE
T ss_pred HHHH----------------HHhhcCCeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEE
Confidence 1110 1123458999999998888765555432 12347899999999
Q ss_pred ccCCCCC--CCCCCccCCceEecchhhcccc-------------C-------CCCeEEEEcCcHHHHHHHHHHHhcC---
Q 010573 183 ATGSDVK--SLPGITIDEKRIVSSTGALALN-------------E-------VPKKLVVIGAGYIGLEMGSVWARLG--- 237 (507)
Q Consensus 183 AtG~~p~--~~pg~~~~~~~~~~~~~~~~~~-------------~-------~~~~vvVvG~G~~g~e~A~~l~~~g--- 237 (507)
|||+.|. .+||.......+.+..++..+. . ...+++|||+|++|+|+|..+.+++
T Consensus 164 AtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~ 243 (502)
T 4g6h_A 164 AVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQD 243 (502)
T ss_dssp CCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred cCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHH
Confidence 9999884 5677543333344444443221 0 1258999999999999999987543
Q ss_pred -----------CeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCC--ceEEEE
Q 010573 238 -----------SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGG--EKTILE 304 (507)
Q Consensus 238 -----------~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g--~~~~i~ 304 (507)
.+|++++..+++++.+++++++.+++.|++.||++++++.|++++ ++++.+.... +++ .+++++
T Consensus 244 l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~--~~~~~~~~~~-~dg~~~~~~i~ 320 (502)
T 4g6h_A 244 LRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVE--EKQLLAKTKH-EDGKITEETIP 320 (502)
T ss_dssp HHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEC--SSEEEEEEEC-TTSCEEEEEEE
T ss_pred HHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEe--CCceEEEEEe-cCcccceeeec
Confidence 689999999999999999999999999999999999999999994 5555554332 222 235799
Q ss_pred cCEEEEeecCCCCCC--CCCCcccCceecCCCCeecCCCCCC-CCCCeEEecCCCC--CCCcHhHHHHHHHHHHHHHcC
Q 010573 305 ADVVLVSAGRTPFTA--GLGLDKIGVETDKMGRIPVNERFAT-NIPGVYAIGDVIP--GPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 305 ~D~vi~a~G~~p~~~--~l~~~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~a~--~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+|.||+|+|.+|+.. .+ ....+...+.+|+|.||++||| +.|||||+|||+. .|+.++.|.+||+++|+||.+
T Consensus 321 ad~viwa~Gv~~~~~~~~l-~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 321 YGTLIWATGNKARPVITDL-FKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp CSEEEECCCEECCHHHHHH-HHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCEEEEccCCcCCHHHHhH-HHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999842 11 2344666778899999999997 8999999999994 467999999999999999963
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=302.70 Aligned_cols=284 Identities=15% Similarity=0.195 Sum_probs=202.8
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec-cccccchhhhhhhhHHHHHHHhhhhhCCcccCccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL-NVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (507)
+++.|||+||||||||++||.+|+|.|++|+|||++ ..||.+. +..+++... .
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~~~~~~~~~~~~-------------------------~ 56 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRVTQNSHGFITRD-------------------------G 56 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGGSSCBCCSTTCT-------------------------T
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCeeeeecCCccCCC-------------------------C
Confidence 345699999999999999999999999999999995 5565432 111111100 1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEE---ecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF---ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPG 193 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg 193 (507)
.....+... ...+..+...+.++...+.. .+...+.+.+.+| .++.||+||||||++|. .+||
T Consensus 57 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~a~~liiATGs~p~~p~i~G 124 (304)
T 4fk1_A 57 IKPEEFKEI----------GLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDH--TKYLAERVLLATGMQEEFPSIPN 124 (304)
T ss_dssp BCHHHHHHH----------HHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTC--CEEEEEEEEECCCCEEECCSCTT
T ss_pred CCHHHHHHH----------HHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCC--CEEEeCEEEEccCCccccccccC
Confidence 111111111 01122333456666665543 3455677777777 78999999999999884 4555
Q ss_pred Cc-cCCceEecchhhccccCCCCeEEEEcCcH-HHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcE
Q 010573 194 IT-IDEKRIVSSTGALALNEVPKKLVVIGAGY-IGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 194 ~~-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~-~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
.. ..+..++++.........+++++|||+|. .++|+|..+.+.+.+|+++.+.+.+ . +.+.+.+++.|++
T Consensus 125 ~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~----~----~~~~~~l~~~g~~ 196 (304)
T 4fk1_A 125 VREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL----S----QTIMDELSNKNIP 196 (304)
T ss_dssp HHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC----C----HHHHHHHHTTTCC
T ss_pred ccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc----h----hhhhhhhhcccee
Confidence 43 23345666655555555677888888775 5689999999999999999876643 2 3456678889999
Q ss_pred EEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeE
Q 010573 272 FMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVY 350 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~Iy 350 (507)
++.+ .++.+..+++.+ .+++. +++++++|.++++.|.+|+..+ +++.|++++++|+|.||+++|||+||||
T Consensus 197 ~~~~-~v~~~~~~~~~~~~v~~~-----~g~~i~~~~~vi~~g~~~~~~~--~~~~g~~~~~~G~I~vd~~~~Ts~p~Iy 268 (304)
T 4fk1_A 197 VITE-SIRTLQGEGGYLKKVEFH-----SGLRIERAGGFIVPTFFRPNQF--IEQLGCELQSNGTFVIDDFGRTSEKNIY 268 (304)
T ss_dssp EECS-CEEEEESGGGCCCEEEET-----TSCEECCCEEEECCEEECSSCH--HHHTTCCCCTTSSSCSSTTCBCSSTTEE
T ss_pred Eeee-eEEEeecCCCeeeeeecc-----ccceeeecceeeeeccccCChh--hhhcCeEECCCCCEEECcCCccCCCCEE
Confidence 9876 477776655444 35554 5678999998888887777665 6788999999999999999999999999
Q ss_pred EecCCCC-CCCcHhHHHHHHHHHHHHHc
Q 010573 351 AIGDVIP-GPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 351 A~GD~a~-~~~~~~~A~~~g~~aa~~i~ 377 (507)
|+|||++ .+.++..|+.||+.||..|.
T Consensus 269 A~GDv~~~~~~~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 269 LAGETTTQGPSSLIIAASQGNKAAIAIN 296 (304)
T ss_dssp ECSHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred EEeccCCCcchHHHHHHHHHHHHHHHHH
Confidence 9999995 45578899999999998874
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=303.89 Aligned_cols=299 Identities=20% Similarity=0.297 Sum_probs=221.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.++||+|||||+||+++|..|++.|++|+|||+++.+||.|.+. .|++.+... .++ .....
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~~~~~~-------------~~~----~~~~~ 64 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTAL--YPEKYIYDV-------------AGF----PKVYA 64 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHT--CTTSEECCS-------------TTC----SSEEH
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeecc--CCCceeecc-------------CCC----CCCCH
Confidence 35899999999999999999999999999999998999987542 232211100 000 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCC---CC--CCCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSD---VK--SLPG 193 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~---p~--~~pg 193 (507)
. .+...+.+.+++.+++++.+ .+..++ .+.+.+.+.++ ..+.||+||+|||+. |. .+|+
T Consensus 65 ~-----------~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~p~~~~i~g 131 (335)
T 2zbw_A 65 K-----------DLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQG--NAYTAKAVIIAAGVGAFEPRRIGAPG 131 (335)
T ss_dssp H-----------HHHHHHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTS--CEEEEEEEEECCTTSEEEECCCCCTT
T ss_pred H-----------HHHHHHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCC--CEEEeCEEEECCCCCCCCCCCCCCCC
Confidence 1 12223344555667887665 454443 33567777666 679999999999994 43 3444
Q ss_pred Cc-cCCceEec-chhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcE
Q 010573 194 IT-IDEKRIVS-STGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 194 ~~-~~~~~~~~-~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
.. .....+++ ..+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+ .++..+.+.+.+++.||+
T Consensus 132 ~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--~~~~~~~l~~~l~~~gv~ 207 (335)
T 2zbw_A 132 EREFEGRGVYYAVKSKA--EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--HEASVKELMKAHEEGRLE 207 (335)
T ss_dssp TTTTBTTTEESSCSCGG--GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--CHHHHHHHHHHHHTTSSE
T ss_pred hhhccCcEEEEecCchh--hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--cHHHHHHHHhccccCCeE
Confidence 43 11222322 11211 12479999999999999999999999999999999887654 367778888899999999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
+++++.+++++.+++...+++....+++.+++++|.|++|+|++|++++ ++..+++++ +|+|.||+++||+.|+|||
T Consensus 208 v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~~~~t~~~~vya 284 (335)
T 2zbw_A 208 VLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGP--LANWGLALE-KNKIKVDTTMATSIPGVYA 284 (335)
T ss_dssp EETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGG--GGGSCCCEE-TTEEECCTTCBCSSTTEEE
T ss_pred EecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchH--hhhcceecc-CCeeeeCCCCCCCCCCEEE
Confidence 9999999999875443356665333445578999999999999999876 567788877 6899999999999999999
Q ss_pred ecCCCC---CCCcHhHHHHHHHHHHHHHcCC
Q 010573 352 IGDVIP---GPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 352 ~GD~a~---~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
+|||+. .+.++..|..||+.||.||.+.
T Consensus 285 ~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 315 (335)
T 2zbw_A 285 CGDIVTYPGKLPLIVLGFGEAAIAANHAAAY 315 (335)
T ss_dssp CSTTEECTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eccccccCcchhhhhhhHHHHHHHHHHHHHH
Confidence 999994 3578999999999999999743
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=303.76 Aligned_cols=297 Identities=24% Similarity=0.236 Sum_probs=219.6
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC----CCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCccc
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR----GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKF 114 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~----~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 114 (507)
++..++||+|||||++|+++|..|++.|++|+|||++ ..+||.+.....+... .++..
T Consensus 18 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~------------------~~~~~ 79 (338)
T 3itj_A 18 GSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENF------------------PGFPD 79 (338)
T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCS------------------TTCTT
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhccc------------------CCCcc
Confidence 3445689999999999999999999999999999994 4788876543311100 00000
Q ss_pred CccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecC--CEEEEEcc---CCceEEEEeCeEEEccCCCCC
Q 010573 115 SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP--SEVSVDTI---EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~--~~~~v~~~---~g~~~~~~~d~lvlAtG~~p~ 189 (507)
.... ..+...+...+++.+++++.+++..++. +.+.+.+. ++ ..+.||+||+|||+.|.
T Consensus 80 ---~~~~-----------~~~~~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~--~~~~~d~vvlAtG~~~~ 143 (338)
T 3itj_A 80 ---GLTG-----------SELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDA--EPVTTDAIILATGASAK 143 (338)
T ss_dssp ---CEEH-----------HHHHHHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSS--CCEEEEEEEECCCEEEC
T ss_pred ---cCCH-----------HHHHHHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCC--cEEEeCEEEECcCCCcC
Confidence 0001 2233344566677899999887666554 44555542 34 67899999999999774
Q ss_pred --CCCCCc-cCCceEecchhhccc--cCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHH
Q 010573 190 --SLPGIT-IDEKRIVSSTGALAL--NEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRS 264 (507)
Q Consensus 190 --~~pg~~-~~~~~~~~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~ 264 (507)
.+|+.. .....+.+....... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+ ...+.+.
T Consensus 144 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------~~~~~~~ 217 (338)
T 3itj_A 144 RMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------STIMQKR 217 (338)
T ss_dssp CCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------CHHHHHH
T ss_pred CCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------CHHHHHH
Confidence 345543 112334444333322 34589999999999999999999999999999999887654 2334455
Q ss_pred HHhc-CcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeec-CCC
Q 010573 265 LEKQ-KMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPV-NER 341 (507)
Q Consensus 265 l~~~-Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~V-d~~ 341 (507)
+.+. ||++++++.+++++.+++++. +++.+..+++++++++|.||+|+|++|+..++ +. +++++++|++.| |++
T Consensus 218 l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~~-~l~~~~~G~i~v~~~~ 294 (338)
T 3itj_A 218 AEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIV--AG-QVDTDEAGYIKTVPGS 294 (338)
T ss_dssp HHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGG--BT-TBCBCTTSCBCCCTTS
T ss_pred HHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHh--hC-ceEecCCCcEEEcCcc
Confidence 5554 999999999999988776554 77765555567889999999999999999863 34 899998999995 888
Q ss_pred CCCCCCCeEEecCCCCC-CCcHhHHHHHHHHHHHHHcC
Q 010573 342 FATNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 342 ~~t~~~~IyA~GD~a~~-~~~~~~A~~~g~~aa~~i~~ 378 (507)
++|+.|||||+|||+.. +..+..|+.||+.||.+|..
T Consensus 295 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 295 SLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEK 332 (338)
T ss_dssp SBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHH
Confidence 99999999999999974 57889999999999999863
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=301.15 Aligned_cols=293 Identities=20% Similarity=0.260 Sum_probs=220.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
.+||+|||||+||+++|..|++.|++|+|||+ ..+||.|......... .++. ..+...
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~~~~------------------~~~~---~~~~~~ 62 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVENW------------------PGDP---NDLTGP 62 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSBCCCS------------------TTCC---SSCBHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc-CCCCceEecchhhhhC------------------CCCC---CCCCHH
Confidence 47999999999999999999999999999997 5788876543221100 0000 001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecC--CEEEEEccCCceEEEEeCeEEEccCCCCCC--CCCCc-cC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVKS--LPGIT-ID 197 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~--~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~-~~ 197 (507)
.+...+...+++.+++++.+++..++. +.+.+ +.++ ..+.||+||+|||+.|.. +|+.. ..
T Consensus 63 -----------~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v-~~~~--~~~~~~~lv~AtG~~~~~~~~~g~~~~~ 128 (320)
T 1trb_A 63 -----------LLMERMHEHATKFETEIIFDHINKVDLQNRPFRL-NGDN--GEYTCDALIIATGASARYLGLPSEEAFK 128 (320)
T ss_dssp -----------HHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEE-EESS--CEEEEEEEEECCCEEECCCCCHHHHHTB
T ss_pred -----------HHHHHHHHHHHHCCCEEEEeeeeEEEecCCEEEE-EeCC--CEEEcCEEEECCCCCcCCCCCCChHHhC
Confidence 122333455667789998887766654 34555 4455 578999999999998743 33332 11
Q ss_pred CceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCce
Q 010573 198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
...+++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++.+.+.+.+.+++.||+++++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv~i~~~~~ 206 (320)
T 1trb_A 129 GRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRT 206 (320)
T ss_dssp TTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCE
T ss_pred CceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCeEEEcCce
Confidence 22344433333333568999999999999999999999999999999988764 3678888888999999999999999
Q ss_pred EEEEEEcCCeEE-EEEeecCC-CceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCC-----CCCCCCeE
Q 010573 278 VVGVDLSGDGVK-LTLEPAAG-GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF-----ATNIPGVY 350 (507)
Q Consensus 278 v~~i~~~~~~v~-v~~~~~~~-g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~-----~t~~~~Iy 350 (507)
+++++.+++++. +++.+..+ ++.+++++|.||+|+|++|++.++ + .+++++ +|+|.||+++ +|+.|+||
T Consensus 207 v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~--~-~~l~~~-~G~i~vd~~~~~~~~~t~~~~vy 282 (320)
T 1trb_A 207 LEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHGNATQTSIPGVF 282 (320)
T ss_dssp EEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGG--T-TTSCEE-TTEECCCCSSSSCTTBCSSTTEE
T ss_pred eEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHh--c-cccccc-CceEEECCCcccccccCCCCCEE
Confidence 999987765543 66653222 445789999999999999999864 3 467778 8999999997 79999999
Q ss_pred EecCCCCC-CCcHhHHHHHHHHHHHHHc
Q 010573 351 AIGDVIPG-PMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 351 A~GD~a~~-~~~~~~A~~~g~~aa~~i~ 377 (507)
|+|||+.. +..+..|..+|+.||.+|.
T Consensus 283 a~GD~~~~~~~~~~~A~~~g~~aa~~i~ 310 (320)
T 1trb_A 283 AAGDVMDHIYRQAITSAGTGCMAALDAE 310 (320)
T ss_dssp ECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred EcccccCCcchhhhhhhccHHHHHHHHH
Confidence 99999976 4688999999999999986
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=305.62 Aligned_cols=292 Identities=20% Similarity=0.250 Sum_probs=220.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
++||+|||||+||+++|..|++.|++|+|||+++.+||.|.+ +.|...+... .+.. ....
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~--~~~~~~~~~~-------------~~~~----~~~~- 66 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA--LYPEKYIYDV-------------AGFP----KIRA- 66 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH--HCTTSEECCS-------------TTCS----SEEH-
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh--cCCCceEecc-------------CCCC----CCCH-
Confidence 479999999999999999999999999999999999997632 2232211000 0000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC--C-EEEEEccCCceEEEEeCeEEEccCC---CCC--CCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--S-EVSVDTIEGGNTVVKGKNIIIATGS---DVK--SLPG 193 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~--~-~~~v~~~~g~~~~~~~d~lvlAtG~---~p~--~~pg 193 (507)
..+...+.+.+++.+++++.+ .+..++. + .+.+.+.++ . +.||+||+|||+ .|. .+|+
T Consensus 67 ----------~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g--~-~~~d~vVlAtG~~~~~p~~~~~~g 133 (332)
T 3lzw_A 67 ----------QELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEE--T-HYSKTVIITAGNGAFKPRKLELEN 133 (332)
T ss_dssp ----------HHHHHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSE--E-EEEEEEEECCTTSCCEECCCCCTT
T ss_pred ----------HHHHHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCC--E-EEeCEEEECCCCCcCCCCCCCCCC
Confidence 223344456667778988864 5555543 2 567777766 3 999999999999 663 4455
Q ss_pred Ccc-CCceEecchhhcccc-CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcE
Q 010573 194 ITI-DEKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 194 ~~~-~~~~~~~~~~~~~~~-~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
... .+..+++ ...... ..+++++|||+|.+|+|+|..+.+.+.+|+++++.+++.+ .++. .+.+++.||+
T Consensus 134 ~~~~~g~~~~~--~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-~~~~-----~~~l~~~gv~ 205 (332)
T 3lzw_A 134 AEQYEGKNLHY--FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-HEHS-----VENLHASKVN 205 (332)
T ss_dssp GGGGBTTTEES--SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-CHHH-----HHHHHHSSCE
T ss_pred hhhccCceEEE--ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-cHHH-----HHHHhcCCeE
Confidence 442 2223333 222222 2379999999999999999999999999999999887643 2222 3447889999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEE
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA 351 (507)
+++++++++++.+++...+++.+..+++++++++|.|++|+|++|+.++ ++..++++ ++|+|.||+++||+.|||||
T Consensus 206 ~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~--~~~~~~~~-~~g~i~vd~~~~t~~~~vya 282 (332)
T 3lzw_A 206 VLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGP--IKNWGLDI-EKNSIVVKSTMETNIEGFFA 282 (332)
T ss_dssp EETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGG--GGGSSCCE-ETTEEECCTTSBCSSTTEEE
T ss_pred EEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchH--HhhcCccc-cCCeEEeCCCCceecCCEEE
Confidence 9999999999877666667777655666788999999999999999986 67788888 56899999999999999999
Q ss_pred ecCCC---CCCCcHhHHHHHHHHHHHHHcC
Q 010573 352 IGDVI---PGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 352 ~GD~a---~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+|||+ +.+.++..|..||+.||.+|+.
T Consensus 283 ~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 283 AGDICTYEGKVNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp CGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence 99999 5678999999999999999974
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=294.51 Aligned_cols=278 Identities=15% Similarity=0.146 Sum_probs=209.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
++||+|||||+||+++|..|++.|++|+|||++...++.......+|. ....+..
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~-------------------------~~~~~~~ 56 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLG-------------------------QDGKAPG 56 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTT-------------------------CTTCCHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcC-------------------------CCCCCHH
Confidence 379999999999999999999999999999996433321110000000 0011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCc-c
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGIT-I 196 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~-~ 196 (507)
.+...+.+.+++. +++++.+++..++ .+.+.+.+.++ .++.||+||+|||+.|. .+|+.. .
T Consensus 57 -----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vviAtG~~~~~~~~~g~~~~ 123 (297)
T 3fbs_A 57 -----------EIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGG--RRETAGRLILAMGVTDELPEIAGLRER 123 (297)
T ss_dssp -----------HHHHHHHHHHTTCTTEEEEESCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCCEEECCCCBTTGGG
T ss_pred -----------HHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECCCCCCCCCCCCCchhh
Confidence 2223334455555 7888888776664 34577887777 67999999999999874 455554 2
Q ss_pred CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
....+++..........+++++|||+|.+|+|+|..|.+.| +|+++.+.+. .++ +.+.+.+++.||+++. +
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~---~~~----~~~~~~l~~~gv~i~~-~ 194 (297)
T 3fbs_A 124 WGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV---EPD----ADQHALLAARGVRVET-T 194 (297)
T ss_dssp BTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC---CCC----HHHHHHHHHTTCEEEC-S
T ss_pred cCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC---CCC----HHHHHHHHHCCcEEEc-c
Confidence 22345555443344445899999999999999999999999 9999988765 233 3456778899999995 8
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceec--CCC-CeecCCCCCCCCCCeEEec
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD--KMG-RIPVNERFATNIPGVYAIG 353 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~--~~G-~i~Vd~~~~t~~~~IyA~G 353 (507)
++++++.++ .+++. +++++++|.|++|+|++|+.++ ++..+++++ ++| ++.||++++|+.|||||+|
T Consensus 195 ~v~~i~~~~---~v~~~-----~g~~~~~D~vi~a~G~~p~~~~--~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~G 264 (297)
T 3fbs_A 195 RIREIAGHA---DVVLA-----DGRSIALAGLFTQPKLRITVDW--IEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACG 264 (297)
T ss_dssp CEEEEETTE---EEEET-----TSCEEEESEEEECCEEECCCSC--HHHHTCCEEEETTEEEECCCTTCBCSSTTEEECS
T ss_pred eeeeeecCC---eEEeC-----CCCEEEEEEEEEccCcccCchh--HHhcCCccccCCCCceEEeCCCCccCCCCEEEEe
Confidence 999986432 55554 4578999999999999999876 677788776 457 8999999999999999999
Q ss_pred CCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 354 DVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 354 D~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
||++.|..+..|..||+.||.+|.
T Consensus 265 D~~~~~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 265 DVARPAGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp GGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCCchHHHHHHHHhHHHHHHHHH
Confidence 999989999999999999999986
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=301.17 Aligned_cols=300 Identities=21% Similarity=0.303 Sum_probs=220.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
|+.++||+|||||+||+++|..|++.|++|+|||+++.+||.|.+. .|++.+... .++. .+
T Consensus 11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~--~~~~~~~~~-------------~~~~----~~ 71 (360)
T 3ab1_A 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAAL--YPEKHIYDV-------------AGFP----EV 71 (360)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHT--CTTSEECCS-------------TTCS----SE
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccc--CCCcccccC-------------CCCC----CC
Confidence 3456899999999999999999999999999999998999987532 222211000 0000 01
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC---CEEEEEccCCceEEEEeCeEEEccCCC---CC--C
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSD---VK--S 190 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~---~~~~v~~~~g~~~~~~~d~lvlAtG~~---p~--~ 190 (507)
+.. .+...+.+.+++.+++++.+ .+..++. ..+.+.+.+| ..+.||+||+|||+. |. .
T Consensus 72 ~~~-----------~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~~li~AtG~~~~~~~~~~ 138 (360)
T 3ab1_A 72 PAI-----------DLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTG--NVYRSRAVLIAAGLGAFEPRKLP 138 (360)
T ss_dssp EHH-----------HHHHHHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTS--CEEEEEEEEECCTTCSCCBCCCG
T ss_pred CHH-----------HHHHHHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCC--cEEEeeEEEEccCCCcCCCCCCC
Confidence 111 12233345566678888765 4555432 2567777776 679999999999984 32 2
Q ss_pred CCC-Cc-cCCceEecc-hhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh
Q 010573 191 LPG-IT-IDEKRIVSS-TGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267 (507)
Q Consensus 191 ~pg-~~-~~~~~~~~~-~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~ 267 (507)
+|+ .. ..+..++.. .+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+. ++..+.+.+.+++
T Consensus 139 i~g~~~~~~~~~v~~~~~~~~--~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--~~~~~~l~~~~~~ 214 (360)
T 3ab1_A 139 QLGNIDHLTGSSVYYAVKSVE--DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH--GKTAHEVERARAN 214 (360)
T ss_dssp GGCCCTTTBTTTEESSCSCGG--GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC--SHHHHSSHHHHHH
T ss_pred CCCchhhCcCceEEEecCCHH--HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC--HHHHHHHHHHhhc
Confidence 344 32 112223221 2221 124799999999999999999999999999999998876543 4566778888889
Q ss_pred cCcEEEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCC
Q 010573 268 QKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNI 346 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~ 346 (507)
.||++++++++++++.+++.+ .+.+. ..+|+..++++|.||+|+|++|+.++ ++..+++++ +|+|.||+++||+.
T Consensus 215 ~gv~i~~~~~v~~i~~~~~~v~~v~~~-~~~g~~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd~~~~t~~ 290 (360)
T 3ab1_A 215 GTIDVYLETEVASIEESNGVLTRVHLR-SSDGSKWTVEADRLLILIGFKSNLGP--LARWDLELY-ENALVVDSHMKTSV 290 (360)
T ss_dssp TSEEEESSEEEEEEEEETTEEEEEEEE-ETTCCEEEEECSEEEECCCBCCSCGG--GGGSSCCEE-TTEEECCTTSBCSS
T ss_pred CceEEEcCcCHHHhccCCCceEEEEEE-ecCCCeEEEeCCEEEECCCCCCCHHH--HHhhccccc-cCeeeecCCCcCCC
Confidence 999999999999998876654 45554 12334478999999999999999876 567788877 68999999999999
Q ss_pred CCeEEecCCCC---CCCcHhHHHHHHHHHHHHHcCC
Q 010573 347 PGVYAIGDVIP---GPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 347 ~~IyA~GD~a~---~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
|+|||+|||+. .+.++..|..||+.||.+|.+.
T Consensus 291 ~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 326 (360)
T 3ab1_A 291 DGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSY 326 (360)
T ss_dssp TTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCccCCCCccceeehhHHHHHHHHHHHHhh
Confidence 99999999994 4578999999999999999753
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=297.37 Aligned_cols=295 Identities=23% Similarity=0.328 Sum_probs=214.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
+...+||+|||||+||+++|..|++.|++|+|||+ ..+||.|.....+... . ++. ..+
T Consensus 11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~~~~~~~~----------------~--~~~---~~~ 68 (335)
T 2a87_A 11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEG-TSFGGALMTTTDVENY----------------P--GFR---NGI 68 (335)
T ss_dssp CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECC-SSCSCGGGSCSCBCCS----------------T--TCT---TCB
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeccchhhhc----------------C--CCC---CCC
Confidence 34568999999999999999999999999999998 4788876543221100 0 000 001
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecC-CEEEE-EccCCceEEEEeCeEEEccCCCCCC--CCCCc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP-SEVSV-DTIEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~-~~~~v-~~~~g~~~~~~~d~lvlAtG~~p~~--~pg~~ 195 (507)
... .+...+.+.+++.+++++.+++..++. +.+.+ .+.++ ..+.||+||+|||+.|.. +|+..
T Consensus 69 ~~~-----------~~~~~l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g--~~~~~d~lviAtG~~~~~~~i~g~~ 135 (335)
T 2a87_A 69 TGP-----------ELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADG--QTHRARAVILAMGAAARYLQVPGEQ 135 (335)
T ss_dssp CHH-----------HHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEETTS--CEEEEEEEEECCCEEECCCCCTHHH
T ss_pred CHH-----------HHHHHHHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCC--CEEEeCEEEECCCCCccCCCCCchH
Confidence 111 122233445666789998887666654 33445 55566 679999999999997743 34432
Q ss_pred -cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 010573 196 -IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 196 -~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
.....+++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+. .+.+++.||++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~--~~~~~---~~~~~~~gV~v~~ 210 (335)
T 2a87_A 136 ELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA--SKIML---DRARNNDKIRFLT 210 (335)
T ss_dssp HTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS--CTTHH---HHHHHCTTEEEEC
T ss_pred hccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc--cHHHH---HHHhccCCcEEEe
Confidence 11233444433333334689999999999999999999999999999999887642 22221 2445678999999
Q ss_pred CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCC-CCCCCCCeEEec
Q 010573 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FATNIPGVYAIG 353 (507)
Q Consensus 275 ~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~G 353 (507)
++++++++.+++...+.+.+..+++.+++++|.|++|+|++|+++++ + .+++++++|+|.||++ ++|+.|+|||+|
T Consensus 211 ~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~t~~~~iya~G 287 (335)
T 2a87_A 211 NHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLV--R-EAIDVDPDGYVLVQGRTTSTSLPGVFAAG 287 (335)
T ss_dssp SEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTT--B-TTBCBCTTSCBCCSTTSSBCSSTTEEECG
T ss_pred CceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHh--h-cccccCCCccEEeCCCCCccCCCCEEEee
Confidence 99999998665433455543334455789999999999999999864 3 4688888899999996 689999999999
Q ss_pred CCCCC-CCcHhHHHHHHHHHHHHHc
Q 010573 354 DVIPG-PMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 354 D~a~~-~~~~~~A~~~g~~aa~~i~ 377 (507)
||++. +..+..|..+|+.||.+|.
T Consensus 288 D~~~~~~~~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 288 DLVDRTYRQAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp GGTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred ecCCccHHHHHHHHHhHHHHHHHHH
Confidence 99976 4688999999999999986
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=307.66 Aligned_cols=291 Identities=25% Similarity=0.384 Sum_probs=221.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...+||+||||||||++||.+|++.|++|+|||+ .+||+|.....++... +.. ...
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~~~~~~~~~------------------~~~----~~~ 265 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLDTVDIENYI------------------SVP----KTE 265 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTTCSCBCCBT------------------TBS----SBC
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccccccccccC------------------CCC----CCC
Confidence 3568999999999999999999999999999986 5788876543332100 000 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCC-----EEEEEccCCceEEEEeCeEEEccCCCCC--CCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS-----EVSVDTIEGGNTVVKGKNIIIATGSDVK--SLP 192 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~-----~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~p 192 (507)
. ..+...+...+++.+++++.+ .+..++.. .+.+.+.+| ..+.||+||+|||++|. .+|
T Consensus 266 ~-----------~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g--~~~~~d~vVlAtG~~~~~~~ip 332 (521)
T 1hyu_A 266 G-----------QKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASG--AVLKARSIIIATGAKWRNMNVP 332 (521)
T ss_dssp H-----------HHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTS--CEEEEEEEEECCCEEECCCCCT
T ss_pred H-----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCC--CEEEcCEEEECCCCCcCCCCCC
Confidence 1 122334455667789999988 67777532 577777777 67999999999998774 455
Q ss_pred CCc-cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh-cCc
Q 010573 193 GIT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK-QKM 270 (507)
Q Consensus 193 g~~-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~-~Gv 270 (507)
|.. .....++.+.........+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.. + ..+.+.+++ .||
T Consensus 333 G~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--~----~~l~~~l~~~~gV 406 (521)
T 1hyu_A 333 GEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--D----QVLQDKVRSLKNV 406 (521)
T ss_dssp TTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--C----HHHHHHHTTCTTE
T ss_pred ChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--C----HHHHHHHhcCCCc
Confidence 543 22233444333322234589999999999999999999999999999999887653 3 335566666 699
Q ss_pred EEEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCe
Q 010573 271 KFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGV 349 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~I 349 (507)
++++++.++++..+++++ .+.+.+..+|+..++++|.|++++|++|+++++ +. .++++++|+|.||++++|++|||
T Consensus 407 ~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l--~~-~l~~~~~G~I~Vd~~~~ts~p~V 483 (521)
T 1hyu_A 407 DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWL--EG-ALERNRMGEIIIDAKCETSVKGV 483 (521)
T ss_dssp EEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGG--TT-TSCBCTTSCBCCCTTCBCSSTTE
T ss_pred EEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHH--hh-hhccCCCCcEEeCCCCCCCCCCE
Confidence 999999999998766555 466665444555689999999999999999874 33 47888889999999999999999
Q ss_pred EEecCCCCCC-CcHhHHHHHHHHHHHHHc
Q 010573 350 YAIGDVIPGP-MLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 350 yA~GD~a~~~-~~~~~A~~~g~~aa~~i~ 377 (507)
||+|||+..+ ..+..|+.+|+.||.++.
T Consensus 484 fA~GD~~~~~~~~~~~A~~~g~~aa~~i~ 512 (521)
T 1hyu_A 484 FAAGDCTTVPYKQIIIATGEGAKASLSAF 512 (521)
T ss_dssp EECSTTBCCSSCCHHHHHHHHHHHHHHHH
T ss_pred EEeecccCCCcceeeehHHhHHHHHHHHH
Confidence 9999999865 578999999999999986
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=292.79 Aligned_cols=293 Identities=23% Similarity=0.255 Sum_probs=213.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEec----CCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK----RGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~----~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (507)
++||+|||||++|+++|..|++.|++|+|||+ ....||.+.....+.. +. ++. ..
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~----------------~~--~~~---~~ 66 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVEN----------------FP--GFP---EG 66 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECC----------------ST--TCT---TC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeecccccc----------------CC--CCc---cC
Confidence 47999999999999999999999999999998 5567776544321100 00 000 00
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecC--CEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP--SEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGI 194 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~--~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~ 194 (507)
++.. .+...+.+.+++.+++++.+++..++. +.+.+.+ ++ ..+.||+||+|||+.|. .+|+.
T Consensus 67 ~~~~-----------~~~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~~~vv~A~G~~~~~~~~~g~ 132 (333)
T 1vdc_A 67 ILGV-----------ELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DS--KAILADAVILAIGAVAKRLSFVGS 132 (333)
T ss_dssp EEHH-----------HHHHHHHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SS--EEEEEEEEEECCCEEECCCCCBTC
T ss_pred CCHH-----------HHHHHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CC--cEEEcCEEEECCCCCcCCCCCCCc
Confidence 1111 122333455667789998887655543 3456666 55 78999999999999874 34444
Q ss_pred ccC-----CceEecchhhcccc--CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh
Q 010573 195 TID-----EKRIVSSTGALALN--EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267 (507)
Q Consensus 195 ~~~-----~~~~~~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~ 267 (507)
... ...+++........ ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~~~~---~~~~~~~ 207 (333)
T 1vdc_A 133 GEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIM---QQRALSN 207 (333)
T ss_dssp SSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHH---HHHHHTC
T ss_pred cccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--cHHH---HHHHHhC
Confidence 320 12333333322222 4589999999999999999999999999999999886532 2222 2244577
Q ss_pred cCcEEEcCceEEEEEEcCC--eE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCC-CC
Q 010573 268 QKMKFMLKTKVVGVDLSGD--GV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FA 343 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~--~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~-~~ 343 (507)
.||++++++++++++.+++ .+ .+.+.+..+++.+++++|.|++|+|++|++.++ + .+++++++|+|.||++ ++
T Consensus 208 ~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~~~~ 284 (333)
T 1vdc_A 208 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFL--D-GGVELDSDGYVVTKPGTTQ 284 (333)
T ss_dssp TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG--T-TSSCBCTTSCBCCCTTSCB
T ss_pred CCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHh--h-ccccccCCCCEEechhhcc
Confidence 8999999999999987664 43 366654334555789999999999999999864 3 4688888899999997 58
Q ss_pred CCCCCeEEecCCCCC-CCcHhHHHHHHHHHHHHHcC
Q 010573 344 TNIPGVYAIGDVIPG-PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 344 t~~~~IyA~GD~a~~-~~~~~~A~~~g~~aa~~i~~ 378 (507)
|+.|+|||+|||+.. +..+..|..+|+.||.+|..
T Consensus 285 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 285 TSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEH 320 (333)
T ss_dssp CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHH
Confidence 999999999999976 46899999999999999863
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.96 Aligned_cols=310 Identities=19% Similarity=0.196 Sum_probs=221.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..+||+||||||||++||.+|++.|+ +|+|||+++.+||.+. .++|...+ .
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~--~~ip~~~~--------------------------~ 237 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST--SEIPQFRL--------------------------P 237 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH--HTSCTTTS--------------------------C
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc--ccCCcccC--------------------------C
Confidence 46899999999999999999999999 7999999888999642 22332110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CCCCC---CCcc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VKSLP---GITI 196 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~~~p---g~~~ 196 (507)
.. +..+..+++++.+|+++.+.... .+. +.+.++ ..+.||+||||||+. |..+| |...
T Consensus 238 -~~-----------~~~~~~~~~~~~gv~~~~~~~v~--~~~--v~~~~~--~~~~~d~vvlAtGa~~p~~l~~~~G~~~ 299 (1025)
T 1gte_A 238 -YD-----------VVNFEIELMKDLGVKIICGKSLS--ENE--ITLNTL--KEEGYKAAFIGIGLPEPKTDDIFQGLTQ 299 (1025)
T ss_dssp -HH-----------HHHHHHHHHHTTTCEEEESCCBS--TTS--BCHHHH--HHTTCCEEEECCCCCEECCCGGGTTCCT
T ss_pred -HH-----------HHHHHHHHHHHCCcEEEcccEec--cce--EEhhhc--CccCCCEEEEecCCCCCCCCCCCCCCCC
Confidence 00 11112356677899998876432 111 233333 346799999999994 65443 4331
Q ss_pred CCceEecchhhcc----------------ccCCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccC-ccCCCCCHHHH
Q 010573 197 DEKRIVSSTGALA----------------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA-DIVPSMDGEIR 258 (507)
Q Consensus 197 ~~~~~~~~~~~~~----------------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~-~~~~~~d~~~~ 258 (507)
...+++..+++. +...+++|+|||+|.+|+|+|..+.++|. +||++++.+ .+++.+++++
T Consensus 300 -~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~- 377 (1025)
T 1gte_A 300 -DQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV- 377 (1025)
T ss_dssp -TTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH-
T ss_pred -CCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH-
Confidence 234666655442 12347899999999999999999999996 899999988 4577776664
Q ss_pred HHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEee---cCC-------CceEEEEcCEEEEeecCCCCCCCCCCcc-c
Q 010573 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEP---AAG-------GEKTILEADVVLVSAGRTPFTAGLGLDK-I 326 (507)
Q Consensus 259 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~---~~~-------g~~~~i~~D~vi~a~G~~p~~~~l~~~~-~ 326 (507)
+.+++.||++++++.++++..+++.+. +++.. .++ ++..++++|.||+|+|++|+...+ ++. .
T Consensus 378 ----~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l-~~~~~ 452 (1025)
T 1gte_A 378 ----ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKV-KEALS 452 (1025)
T ss_dssp ----HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHH-HHHTT
T ss_pred ----HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhh-hhccc
Confidence 356778999999999999987655543 44431 111 223579999999999998754333 333 5
Q ss_pred CceecCCCCeecCC-CCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC---CCCCCCCccEEEEcCCCeeeec
Q 010573 327 GVETDKMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH---GHVDYDKVPGVVYTHPEVASVG 402 (507)
Q Consensus 327 gl~~~~~G~i~Vd~-~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~~~~~~~vG 402 (507)
|++++++|+|.||+ ++||+.|+|||+|||+..+.++..|+.||+.||.+|.+.. ...++...|.+.|+.|+++.++
T Consensus 453 gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ 532 (1025)
T 1gte_A 453 PIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVD 532 (1025)
T ss_dssp TSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCC
T ss_pred CceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccccccccc
Confidence 88999889999997 8999999999999999989999999999999999997421 1134444555556666555554
Q ss_pred CC
Q 010573 403 KT 404 (507)
Q Consensus 403 ~~ 404 (507)
++
T Consensus 533 ls 534 (1025)
T 1gte_A 533 IS 534 (1025)
T ss_dssp CC
T ss_pred ce
Confidence 43
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-36 Score=301.17 Aligned_cols=282 Identities=24% Similarity=0.315 Sum_probs=204.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
...+||+||||||||++||..|++.|++|+|||+.+.+||.+.+ .+|... .+
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~--gip~~~--------------------------~~ 171 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVY--GIPGFK--------------------------LE 171 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHH--TSCTTT--------------------------SC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeee--cCCCcc--------------------------CC
Confidence 35689999999999999999999999999999998889986422 122110 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC-C--CCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p-~--~~pg~~~~ 197 (507)
. .+.....+++++.+++++.+... . . .+.++++ .+.||+||||||+.+ . .+||..
T Consensus 172 -~-----------~~~~~~~~~l~~~gv~~~~~~~v--~-~--~v~~~~~---~~~~d~vvlAtG~~~~~~~~ipG~~-- 229 (456)
T 2vdc_G 172 -K-----------SVVERRVKLLADAGVIYHPNFEV--G-R--DASLPEL---RRKHVAVLVATGVYKARDIKAPGSG-- 229 (456)
T ss_dssp -H-----------HHHHHHHHHHHHTTCEEETTCCB--T-T--TBCHHHH---HSSCSEEEECCCCCEECCTTCSCCT--
T ss_pred -H-----------HHHHHHHHHHHHCCcEEEeCCEe--c-c--EEEhhHh---HhhCCEEEEecCCCCCCCCCCCCCc--
Confidence 0 01112235566778888776532 1 1 1222222 256999999999973 2 455543
Q ss_pred CceEecchhhcc------------------ccCCCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCcc-CCCCCHHH
Q 010573 198 EKRIVSSTGALA------------------LNEVPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI-VPSMDGEI 257 (507)
Q Consensus 198 ~~~~~~~~~~~~------------------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~-~~~~d~~~ 257 (507)
...+++..+++. ....+++|+|||+|.+|+|+|..+.+.|. +|++++|++.. ++..+.+
T Consensus 230 ~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e- 308 (456)
T 2vdc_G 230 LGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQRE- 308 (456)
T ss_dssp TTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHH-
T ss_pred CCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHH-
Confidence 233444332211 12458999999999999999999999998 59999998876 6655544
Q ss_pred HHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEee------cC---------CCceEEEEcCEEEEeecCCCCCCCC
Q 010573 258 RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEP------AA---------GGEKTILEADVVLVSAGRTPFTAGL 321 (507)
Q Consensus 258 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~------~~---------~g~~~~i~~D~vi~a~G~~p~~~~l 321 (507)
.+.+++.||++++++.++++..+ +.+. +++.. .. +++..++++|.||+|+|+.|+...+
T Consensus 309 ----~~~~~~~Gv~~~~~~~~~~i~~~-g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~ 383 (456)
T 2vdc_G 309 ----VAHAEEEGVEFIWQAAPEGFTGD-TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPN 383 (456)
T ss_dssp ----HHHHHHTTCEEECCSSSCCEEEE-EEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHH
T ss_pred ----HHHHHHCCCEEEeCCCceEEeCC-CcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchh
Confidence 24567789999999999888753 2221 22211 01 2334689999999999999987521
Q ss_pred CCcccCceecCCCCeecCCC-CCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 322 GLDKIGVETDKMGRIPVNER-FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 322 ~~~~~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
.++..+++++++|+|.||++ ++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 384 ~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 384 AFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp HHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHH
T ss_pred hcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHH
Confidence 15677899999999999998 9999999999999999999999999999999999864
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=285.85 Aligned_cols=311 Identities=14% Similarity=0.198 Sum_probs=212.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCc-ccCccccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV-KFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 120 (507)
++||+|||||+||+++|.+|++.|+ +|+|||+++ +||.|.++..... +..... ....+++ .......+
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~--~~~~~~-------~~~~~g~~~~~~~~~~ 73 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTR--TITPSF-------TSNGFGMPDMNAISMD 73 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCB--CSSCCC-------CCGGGTCCCTTCSSTT
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCccccc--ccCcch-------hcccCCchhhhhcccc
Confidence 4799999999999999999999999 999999987 9998865432100 000000 0001111 00000011
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHhCCcEEEEeE-EEEecCC--EEEEEccCCceEEEEeCeEEEccCCCCC-CCCCC
Q 010573 121 LPAMMAQKDK--AVSNLTRGIEGLFKKNKVTYVKGY-GKFISPS--EVSVDTIEGGNTVVKGKNIIIATGSDVK-SLPGI 194 (507)
Q Consensus 121 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~--~~~v~~~~g~~~~~~~d~lvlAtG~~p~-~~pg~ 194 (507)
+......... ....+...+....++.+++++.+. +..++.+ .+.|.+.++ .+.||+||+|||+.+. .+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~d~vVlAtG~~~~p~ip~- 149 (369)
T 3d1c_A 74 TSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE---TYHADYIFVATGDYNFPKKPF- 149 (369)
T ss_dssp CCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC---CEEEEEEEECCCSTTSBCCCS-
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC---EEEeCEEEECCCCCCccCCCC-
Confidence 1000000000 012233344556677899988774 5555433 566766655 4899999999999763 4444
Q ss_pred ccCCceEecchhhccccC-CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-------CCCHHHHHHHHHHHH
Q 010573 195 TIDEKRIVSSTGALALNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------SMDGEIRKQFQRSLE 266 (507)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~-~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------~~d~~~~~~~~~~l~ 266 (507)
..+++..+...... .+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .+++...+.+.+.++
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~ 225 (369)
T 3d1c_A 150 ----KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIK 225 (369)
T ss_dssp ----SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHH
T ss_pred ----CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHh
Confidence 12333444433333 357999999999999999999999999999999887763 256777888999999
Q ss_pred hcC-cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEE-EcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCC-CC
Q 010573 267 KQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-FA 343 (507)
Q Consensus 267 ~~G-v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i-~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~-~~ 343 (507)
+.| |++++++.|.+++.+++.+.+++. +++++ .+|.||+|+|++|+++++ ...+++ +++|++.||++ ++
T Consensus 226 ~~g~v~~~~~~~v~~i~~~~~~~~v~~~-----~g~~~~~~d~vi~a~G~~~~~~~~--~~~~~~-~~~g~i~v~~~~~~ 297 (369)
T 3d1c_A 226 QGARIEMNVHYTVKDIDFNNGQYHISFD-----SGQSVHTPHEPILATGFDATKNPI--VQQLFV-TTNQDIKLTTHDES 297 (369)
T ss_dssp TTCCEEEECSCCEEEEEEETTEEEEEES-----SSCCEEESSCCEECCCBCGGGSHH--HHHHSC-CTTSCCCBCTTSBB
T ss_pred hCCcEEEecCcEEEEEEecCCceEEEec-----CCeEeccCCceEEeeccCCccchh--hhhhcc-CCCCCEEechhhcc
Confidence 997 999999999999876777777764 33445 469999999999999653 344466 67788999986 56
Q ss_pred CCCCCeEEecCCCCCCC----cHhHHHHHHHHHHHHHcCC
Q 010573 344 TNIPGVYAIGDVIPGPM----LAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 344 t~~~~IyA~GD~a~~~~----~~~~A~~~g~~aa~~i~~~ 379 (507)
|+.|+|||+|||+..+. ....+..||+.+|++|.+.
T Consensus 298 t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~ 337 (369)
T 3d1c_A 298 TRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQR 337 (369)
T ss_dssp SSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHH
T ss_pred cCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhcc
Confidence 99999999999996533 2456788999999999865
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=281.11 Aligned_cols=303 Identities=16% Similarity=0.177 Sum_probs=203.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
++||+|||||++|+++|..|++.|++|+|||+++.+||.|.+ +.|...+...... ..+ .+.........+.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~--~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~ 73 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH--AWHSLHLFSPAGW-----SSI--PGWPMPASQGPYP 73 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG--SCTTCBCSSCGGG-----SCC--SSSCCCCCSSSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC--CCCCcEecCchhh-----hhC--CCCCCCCCccCCC
Confidence 479999999999999999999999999999999999998865 2332222111110 000 1111110000110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEe--cCCEEE-EEccCCceEEEEeCeEEEccCC--CC--CCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVS-VDTIEGGNTVVKGKNIIIATGS--DV--KSLPGI 194 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--d~~~~~-v~~~~g~~~~~~~d~lvlAtG~--~p--~~~pg~ 194 (507)
. ...+...+....++.+++++.+ ++..+ +.+.+. +.+.++ ++.||+||+|||. .| +.+|+.
T Consensus 74 ~--------~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g---~~~~d~vV~AtG~~~~~~~~~~~g~ 142 (357)
T 4a9w_A 74 A--------RAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR---QWLARAVISATGTWGEAYTPEYQGL 142 (357)
T ss_dssp B--------HHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC---EEEEEEEEECCCSGGGBCCCCCTTG
T ss_pred C--------HHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC---EEEeCEEEECCCCCCCCCCCCCCCc
Confidence 0 1223344456667778888776 44443 455666 777665 7899999999995 44 345555
Q ss_pred ccCCceEecchhh-ccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc-CccCCCC--CHHHHHHHHHHHH----
Q 010573 195 TIDEKRIVSSTGA-LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA-ADIVPSM--DGEIRKQFQRSLE---- 266 (507)
Q Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~~~~~--d~~~~~~~~~~l~---- 266 (507)
........+..+. ......+++++|||+|.+|+|+|..|.+.| +|+++.+. +.+++.. ...+.+.+.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (357)
T 4a9w_A 143 ESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQE 221 (357)
T ss_dssp GGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------
T ss_pred cccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhcccc
Confidence 4222223333332 223345799999999999999999999998 69999887 4555532 3444433333332
Q ss_pred ------------------------hcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC
Q 010573 267 ------------------------KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG 322 (507)
Q Consensus 267 ------------------------~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~ 322 (507)
+.|+ +..+..+.+++ .++ +.+. +++++++|.|++|+|++|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~--~~~--v~~~-----~g~~i~~D~vi~a~G~~p~~~~-- 289 (357)
T 4a9w_A 222 GREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFS--PTG--MQWA-----DGTERAFDAVIWCTGFRPALSH-- 289 (357)
T ss_dssp ------------CBCCCHHHHHHHHTTC-CCEECCCSEEE--TTE--EECT-----TSCEEECSEEEECCCBCCCCGG--
T ss_pred ccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEe--CCe--eEEC-----CCCEecCCEEEECCCcCCCCcc--
Confidence 3343 44455555553 233 3332 5678999999999999999887
Q ss_pred CcccCceecCCCCeecCCC--CCCCCCCeEEec--CCCC-CCCcHhHHHHHHHHHHHHHcCC
Q 010573 323 LDKIGVETDKMGRIPVNER--FATNIPGVYAIG--DVIP-GPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 323 ~~~~gl~~~~~G~i~Vd~~--~~t~~~~IyA~G--D~a~-~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
++..++. +++|+|.||++ ++|+.|||||+| ||+. .+.....|..||+.+|.+|...
T Consensus 290 l~~~gl~-~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~ 350 (357)
T 4a9w_A 290 LKGLDLV-TPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAY 350 (357)
T ss_dssp GTTTTCB-CTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHH
T ss_pred cCccccc-CCCCCccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 5778888 78899999999 889999999999 5665 4567788999999999999743
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=289.56 Aligned_cols=287 Identities=22% Similarity=0.272 Sum_probs=204.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||||||+||++||.+|++.+ ++|+|||+++...- .|. ++ ++....+..++...+.
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~-------~p~--------l~-----~v~~g~~~~~~i~~~~ 62 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGF-------TPA--------FP-----HLAMGWRKFEDISVPL 62 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEEC-------GGG--------HH-----HHHHTCSCGGGSEEES
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCcc-------Ccc--------HH-----HHhcCCCCHHHhhhcH
Confidence 37999999999999999999864 79999999653211 111 00 1111222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC-CCCCCCccCCce
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-KSLPGITIDEKR 200 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p-~~~pg~~~~~~~ 200 (507)
..++++.+|+++.+++..+|++..+|.+++| +++.||+||||||+++ +.+||.......
T Consensus 63 ------------------~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g--~~i~YD~LViAtG~~~~~~i~G~~e~~~~ 122 (430)
T 3hyw_A 63 ------------------APLLPKFNIEFINEKAESIDPDANTVTTQSG--KKIEYDYLVIATGPKLVFGAEGQEENSTS 122 (430)
T ss_dssp ------------------TTTGGGGTEEEECSCEEEEETTTTEEEETTC--CEEECSEEEECCCCEEECCSBTHHHHSCC
T ss_pred ------------------HHHHHHCCcEEEEeEEEEEECCCCEEEECCC--CEEECCEEEEeCCCCccCCccCcccCcCC
Confidence 2456677999999999999998888999888 7899999999999976 345665433344
Q ss_pred EecchhhccccC------CCCeEEEEcCcH------HHHHHH----HHHHhcC----CeeEEEcccCccC---CCCCHHH
Q 010573 201 IVSSTGALALNE------VPKKLVVIGAGY------IGLEMG----SVWARLG----SEVTVVEFAADIV---PSMDGEI 257 (507)
Q Consensus 201 ~~~~~~~~~~~~------~~~~vvVvG~G~------~g~e~A----~~l~~~g----~~Vtlv~~~~~~~---~~~d~~~ 257 (507)
+.+.+++..+.+ ..+.++|+|++. .+.|++ ..+.+.| .+|++++..+.+. +..++..
T Consensus 123 ~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~ 202 (430)
T 3hyw_A 123 ICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGAS 202 (430)
T ss_dssp CSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTH
T ss_pred cccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHH
Confidence 556666544321 134455555542 233443 3445554 4788888776543 3456778
Q ss_pred HHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccC--ceecCCCC
Q 010573 258 RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIG--VETDKMGR 335 (507)
Q Consensus 258 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~g--l~~~~~G~ 335 (507)
.+.+++.++++||++++++.|++++ ++++.+.. .+++++++++|.+++++|.+|+.. +...+ +..+.+|.
T Consensus 203 ~~~l~~~l~~~GV~~~~~~~v~~v~--~~~~~~~~---~~g~~~~i~~d~vi~~~G~~~~~~---~~~~~~~l~~~~~g~ 274 (430)
T 3hyw_A 203 KRLVEDLFAERNIDWIANVAVKAIE--PDKVIYED---LNGNTHEVPAKFTMFMPSFQGPEV---VASAGDKVANPANKM 274 (430)
T ss_dssp HHHHHHHHHHTTCEEECSCEEEEEC--SSEEEEEC---TTSCEEEEECSEEEEECEEECCHH---HHTTCTTTBCTTTCC
T ss_pred HHHHHHHHHhCCeEEEeCceEEEEe--CCceEEEe---eCCCceEeecceEEEeccCCCchH---HHhcccccccCCceE
Confidence 8889999999999999999999994 45544432 245677999999999999999753 23333 44556678
Q ss_pred eecCCCCC-CCCCCeEEecCCCCC------------CCcHhHHHHHHHHHHHHHcC
Q 010573 336 IPVNERFA-TNIPGVYAIGDVIPG------------PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 336 i~Vd~~~~-t~~~~IyA~GD~a~~------------~~~~~~A~~~g~~aa~~i~~ 378 (507)
|.||++|| |++|||||+|||+.. |+.++.|.+||+.+|+||+.
T Consensus 275 i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~ 330 (430)
T 3hyw_A 275 VIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp BCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999 899999999999953 45788999999999999973
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=289.03 Aligned_cols=289 Identities=20% Similarity=0.245 Sum_probs=208.8
Q ss_pred CCcEEEECCChHHHHHHHHHHH---CCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~---~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
++||+|||||+||+++|..|++ .|++|+|||+++.+.. .|... . +......
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~-------~~~~~--------~-----~~~g~~~------ 57 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF-------VPSNP--------W-----VGVGWKE------ 57 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEEC-------GGGHH--------H-----HHHTSSC------
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcc-------cCCcc--------c-----cccCccC------
Confidence 5799999999999999999999 7999999999653211 11110 0 0000000
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCccC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITID 197 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~~ 197 (507)
.+.+...+.+++++.+++++.+.+..++.+...|.+.++ .++.||+||+|||++|. .+||....
T Consensus 58 ------------~~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~i~~d~lviAtG~~~~~~~ipG~~~~ 123 (437)
T 3sx6_A 58 ------------RDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADG--NTVHYDYLMIATGPKLAFENVPGSDPH 123 (437)
T ss_dssp ------------HHHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCCEECGGGSTTCSTT
T ss_pred ------------HHHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCC--CEEECCEEEECCCCCcCcccCCCCCcc
Confidence 011222234567778999998888888887667887777 67999999999999884 56776532
Q ss_pred Cc---eEecchhhccccC------CCCeEEEEcCcHH----H--HHHH----HHHHhcCCe-----eEEEcccCccC---
Q 010573 198 EK---RIVSSTGALALNE------VPKKLVVIGAGYI----G--LEMG----SVWARLGSE-----VTVVEFAADIV--- 250 (507)
Q Consensus 198 ~~---~~~~~~~~~~~~~------~~~~vvVvG~G~~----g--~e~A----~~l~~~g~~-----Vtlv~~~~~~~--- 250 (507)
.. .+.+..++..+.. .+++++|||+|.. | +|+| ..+.+.|.+ |+++++.+.+.
T Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~ 203 (437)
T 3sx6_A 124 EGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLG 203 (437)
T ss_dssp TSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTT
T ss_pred cCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccc
Confidence 11 3445555543321 1456788898654 3 7777 666677864 99999988763
Q ss_pred -CCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCc---eEEEEcCEEEEeecCCCCCCCCCCccc
Q 010573 251 -PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE---KTILEADVVLVSAGRTPFTAGLGLDKI 326 (507)
Q Consensus 251 -~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~---~~~i~~D~vi~a~G~~p~~~~l~~~~~ 326 (507)
+.+ ++....+++.+++.||++++++.|++++ ++++.+.... .+++ ++++++|.+++++|+.|+... .+..
T Consensus 204 l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~--~~~v~~~~~~-~~g~~~~~~~i~~D~vv~~~g~~~~~~~--~~~~ 277 (437)
T 3sx6_A 204 IQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVE--DNKMYVTQVD-EKGETIKEMVLPVKFGMMIPAFKGVPAV--AGVE 277 (437)
T ss_dssp TTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEE--TTEEEEEEEC-TTSCEEEEEEEECSEEEEECCEECCHHH--HTST
T ss_pred cCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEE--CCeEEEEecc-cCCccccceEEEEeEEEEcCCCcCchhh--hccc
Confidence 223 3578889999999999999999999995 4455544211 1222 678999999999998887543 2334
Q ss_pred CceecCCCCeecCCCCCC-CCCCeEEecCCCCC------------CCcHhHHHHHHHHHHHHHcC
Q 010573 327 GVETDKMGRIPVNERFAT-NIPGVYAIGDVIPG------------PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 327 gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~a~~------------~~~~~~A~~~g~~aa~~i~~ 378 (507)
++ .+++|+|.||+++|| +.|||||+|||+.. |..+..|..||+.||+||..
T Consensus 278 gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~ 341 (437)
T 3sx6_A 278 GL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKA 341 (437)
T ss_dssp TT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 66 577899999999998 99999999999963 56899999999999999973
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=300.15 Aligned_cols=296 Identities=21% Similarity=0.229 Sum_probs=218.4
Q ss_pred hccccccccccceeeeeeccccccCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhh
Q 010573 14 LSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKAL 93 (507)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~ 93 (507)
...|..||..+++....+.+.. ..+....+||+|||||+||++||..|++.|++|+|||+++.+||++....++|.+..
T Consensus 363 ~~~C~vnp~~g~e~~~~~~~~~-~~~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~ 441 (690)
T 3k30_A 363 PIRCTQNPSMGEEWRRGWHPER-IRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSA 441 (690)
T ss_dssp CCCCSSCTTTTTTTTTCCCSSC-CCCCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGG
T ss_pred cccCCcCcccCcccccccCccc-cCcccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhH
Confidence 3468999999998765443332 345566789999999999999999999999999999999999998765544443210
Q ss_pred hhhhHHHHHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEecCCEEEEEccCCce
Q 010573 94 LHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGN 172 (507)
Q Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g~~ 172 (507)
+.. +..++...+++. ++++..++. +...++
T Consensus 442 ---------------------------~~~-----------~~~~~~~~~~~~~gv~~~~~~~---------v~~~~~-- 472 (690)
T 3k30_A 442 ---------------------------WGR-----------VKEYREAVLAELPNVEIYRESP---------MTGDDI-- 472 (690)
T ss_dssp ---------------------------GGH-----------HHHHHHHHHHTCTTEEEESSCC---------CCHHHH--
T ss_pred ---------------------------HHH-----------HHHHHHHHHHHcCCCEEEECCe---------ecHHHH--
Confidence 111 112223444554 777765532 122222
Q ss_pred EEEEeCeEEEccCCCCC----------CCCCCccCCceEecchhhcccc-CCCCeEEEEc--CcHHHHHHHHHHHhcCCe
Q 010573 173 TVVKGKNIIIATGSDVK----------SLPGITIDEKRIVSSTGALALN-EVPKKLVVIG--AGYIGLEMGSVWARLGSE 239 (507)
Q Consensus 173 ~~~~~d~lvlAtG~~p~----------~~pg~~~~~~~~~~~~~~~~~~-~~~~~vvVvG--~G~~g~e~A~~l~~~g~~ 239 (507)
..+.||+||+|||+.|. .+|+. +...+++..+.+... ..+++++||| +|.+|+|+|..|.+.|.+
T Consensus 473 ~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~--~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~ 550 (690)
T 3k30_A 473 VEFGFEHVITATGATWRTDGVARFHTTALPIA--EGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYE 550 (690)
T ss_dssp HHTTCCEEEECCCEEECSSCCSSSCSSCCCBC--TTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCE
T ss_pred hhcCCCEEEEcCCCccccccccccCCCCCCCC--CCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCe
Confidence 45789999999999842 23443 345677777766543 3467899999 999999999999999999
Q ss_pred eEEEcccCccCCCCC-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 240 VTVVEFAADIVPSMD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 240 Vtlv~~~~~~~~~~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
|+++++.+.+++..+ +.....+.+.+++.||+++++++|++++ ++++.+.. ..+++++++++|.||+|+|++|++
T Consensus 551 Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~--~~~~~v~~--~~~~~~~~i~aD~VV~A~G~~p~~ 626 (690)
T 3k30_A 551 VSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG--AGGVTVRD--TYASIERELECDAVVMVTARLPRE 626 (690)
T ss_dssp EEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEE--TTEEEEEE--TTTCCEEEEECSEEEEESCEEECC
T ss_pred eEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEE--CCeEEEEE--ccCCeEEEEECCEEEECCCCCCCh
Confidence 999999988776443 5567778899999999999999999996 34444443 234467789999999999999998
Q ss_pred CCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCC
Q 010573 319 AGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 319 ~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
.+ ++..+.. +. +|+.|+|||+|||++.+ ....|+.||+.||.||.+.
T Consensus 627 ~l--~~~l~~~----~~-------~t~~~~VyaiGD~~~~~-~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 627 EL--YLDLVAR----RD-------AGEIASVRGIGDAWAPG-TIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp HH--HHHHHHH----HH-------HTSCSEEEECGGGTSCB-CHHHHHHHHHHHHHHTTCC
T ss_pred HH--HHHHhhh----hc-------ccCCCCEEEEeCCCchh-hHHHHHHHHHHHHHHHHhh
Confidence 75 2332211 11 78999999999999765 4555999999999999876
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-33 Score=278.39 Aligned_cols=284 Identities=19% Similarity=0.210 Sum_probs=208.5
Q ss_pred CcEEEECCChHHHHHHHHHHH---CCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~---~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
+||+|||||+||+++|..|++ .|++|+|||+++.++... +.+. .........+.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~----~~~~----------------~~~~~~~~~~~--- 58 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP----ALPH----------------VAIGVRDVDEL--- 58 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECC----SSCC----------------CCSSCCCCCCE---
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceecc----chhh----------------cccCCcCHHHH---
Confidence 589999999999999999999 899999999976543221 1110 00000001111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCC--ceEEEEeCeEEEccCCCCC--CCCCCcc
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG--GNTVVKGKNIIIATGSDVK--SLPGITI 196 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g--~~~~~~~d~lvlAtG~~p~--~~pg~~~ 196 (507)
...+.+.+++.+++++.+++..++.+...|.+.++ +..++.||+||+|||++|. .+||...
T Consensus 59 ---------------~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~ 123 (409)
T 3h8l_A 59 ---------------KVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDK 123 (409)
T ss_dssp ---------------EEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHH
T ss_pred ---------------HHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhh
Confidence 11124556677999999988888766445554444 3456999999999999874 3566543
Q ss_pred CCceEecchhhcccc----CCCCeEEEEcCcH-------------------------HHHHHH----HHHHhcCC----e
Q 010573 197 DEKRIVSSTGALALN----EVPKKLVVIGAGY-------------------------IGLEMG----SVWARLGS----E 239 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~----~~~~~vvVvG~G~-------------------------~g~e~A----~~l~~~g~----~ 239 (507)
....+.+..+...+. ...++++|||+|. .++|+| ..+.+.|. +
T Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~ 203 (409)
T 3h8l_A 124 YGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVH 203 (409)
T ss_dssp HCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEE
T ss_pred cCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeE
Confidence 223344444444332 2236677999992 466766 45667774 8
Q ss_pred eEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 240 VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 240 Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
|+++++.+ +++.+++++.+.+.+.+++.||+++++++|++++. ++ ++++ +++++++|.|++++|++|+..
T Consensus 204 v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~~--v~~~-----~g~~~~~D~vi~a~G~~~~~~ 273 (409)
T 3h8l_A 204 VTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE--IVDE-----KGNTIPADITILLPPYTGNPA 273 (409)
T ss_dssp EEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECS--SE--EEET-----TSCEEECSEEEEECCEECCHH
T ss_pred EEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCceEEECC--Ce--EEEC-----CCCEEeeeEEEECCCCCccHH
Confidence 99999988 78888999999999999999999999999999953 34 4443 567899999999999999853
Q ss_pred CCCCccc--CceecCCCCeecCCCCCC-CCCCeEEecCCCC--CCCcHhHHHHHHHHHHHHHcCC
Q 010573 320 GLGLDKI--GVETDKMGRIPVNERFAT-NIPGVYAIGDVIP--GPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 320 ~l~~~~~--gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~a~--~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
++.. ++ .+++|+|.||+++|| +.|||||+|||+. .+.++..|..||+.||+||.+.
T Consensus 274 ---l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~ 334 (409)
T 3h8l_A 274 ---LKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANR 334 (409)
T ss_dssp ---HHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4555 44 367789999999998 9999999999995 5778999999999999999743
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=278.99 Aligned_cols=281 Identities=18% Similarity=0.268 Sum_probs=201.2
Q ss_pred CCcEEEECCChHHHHHHHHHHH-C------CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ-L------GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS 115 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~-~------g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 115 (507)
.+||+||||||||++||..|++ . |++|+|||+.+.+||.| ..++.|.+....
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~-~~gv~p~~~~~~-------------------- 61 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV-RSGVAPDHPKIK-------------------- 61 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH-HHTSCTTCTGGG--------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcc-ccccCCCCCCHH--------------------
Confidence 4799999999999999999999 7 99999999988888876 345555321110
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCC-CC--CCC
Q 010573 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSD-VK--SLP 192 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~-p~--~~p 192 (507)
.+...+..++++.+++++.+.. ++. .|.+.++ .+.||+||+|||+. |. .+|
T Consensus 62 ------------------~~~~~~~~~~~~~~v~~~~~v~--v~~---~v~~~~~---~~~~d~lViAtG~~~~~~~~ip 115 (456)
T 1lqt_A 62 ------------------SISKQFEKTAEDPRFRFFGNVV--VGE---HVQPGEL---SERYDAVIYAVGAQSDRMLNIP 115 (456)
T ss_dssp ------------------GGHHHHHHHHTSTTEEEEESCC--BTT---TBCHHHH---HHHSSEEEECCCCCEECCCCCT
T ss_pred ------------------HHHHHHHHHHhcCCCEEEeeEE--ECC---EEEECCC---eEeCCEEEEeeCCCCCCCCCCC
Confidence 0112233456667888876622 221 1333333 47899999999997 43 456
Q ss_pred CCccCCceEecchhhc-----------ccc-CCCCeEEEEcCcHHHHHHHHHHHhc--------------------C-Ce
Q 010573 193 GITIDEKRIVSSTGAL-----------ALN-EVPKKLVVIGAGYIGLEMGSVWARL--------------------G-SE 239 (507)
Q Consensus 193 g~~~~~~~~~~~~~~~-----------~~~-~~~~~vvVvG~G~~g~e~A~~l~~~--------------------g-~~ 239 (507)
|.. ...+++..++. .+. ..+++++|||+|++|+|+|..|.+. | .+
T Consensus 116 G~~--~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~ 193 (456)
T 1lqt_A 116 GED--LPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQE 193 (456)
T ss_dssp TTT--STTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCE
T ss_pred CCC--CCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcE
Confidence 654 33466655542 122 2479999999999999999999874 5 48
Q ss_pred eEEEcccCccCCCCCH-------------------HH------------------HHHHHHHHHh------cCcEEEcCc
Q 010573 240 VTVVEFAADIVPSMDG-------------------EI------------------RKQFQRSLEK------QKMKFMLKT 276 (507)
Q Consensus 240 Vtlv~~~~~~~~~~d~-------------------~~------------------~~~~~~~l~~------~Gv~i~~~~ 276 (507)
|+++.|++.+...+++ ++ .+.+.+.+++ +||++++++
T Consensus 194 V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~ 273 (456)
T 1lqt_A 194 VVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLT 273 (456)
T ss_dssp EEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSE
T ss_pred EEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCC
Confidence 9999998876543321 11 2344455555 799999999
Q ss_pred eEEEEEEcCCeEEEEEeec-------------CCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCC
Q 010573 277 KVVGVDLSGDGVKLTLEPA-------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFA 343 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~-------------~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~ 343 (507)
.+.++..++....+++... .+|+.+++++|.|++|+|++|+. . .+++++++|+|.+|+++|
T Consensus 274 ~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l-----~gl~~d~~g~i~vn~~~r 347 (456)
T 1lqt_A 274 SPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T-----PGLPFDDQSGTIPNVGGR 347 (456)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C-----TTSCCBTTTTBCCEETTE
T ss_pred CCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C-----CCCcccCCCCeeECCCCc
Confidence 9999976532112333210 11233579999999999999987 2 357778889999999999
Q ss_pred -CCCCCeEEecCCCCCCC-cHhHHHHHHHHHHHHHcC
Q 010573 344 -TNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 344 -t~~~~IyA~GD~a~~~~-~~~~A~~~g~~aa~~i~~ 378 (507)
|+.|+|||+|||+.+|. ....|+.+|..+|.+|++
T Consensus 348 vt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~ 384 (456)
T 1lqt_A 348 INGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 384 (456)
T ss_dssp ETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 89999999999997665 566899999999999974
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=298.33 Aligned_cols=312 Identities=17% Similarity=0.242 Sum_probs=215.2
Q ss_pred ccccccccccceeeeeeccccccCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhh
Q 010573 15 SRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALL 94 (507)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~ 94 (507)
..|..||..+++....+.++ ...+....+||+||||||||++||..|++.|++|+|||+++.+||+|....++|....
T Consensus 362 ~~C~~n~~~g~e~~~~~~~~-~~~~~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~- 439 (729)
T 1o94_A 362 MICTQNATAGEEYRRGWHPE-KFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGE- 439 (729)
T ss_dssp CCCSSCTTTTTHHHHCCCTT-CCCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGG-
T ss_pred eeeccCcccccccccccccc-ccccccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHH-
Confidence 35888998888754333222 1334456789999999999999999999999999999999999998877666554311
Q ss_pred hhhHHHHHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHH--HhCCcEEEEeEEEEecCCEEEEEccCCce
Q 010573 95 HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLF--KKNKVTYVKGYGKFISPSEVSVDTIEGGN 172 (507)
Q Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~d~~~~~v~~~~g~~ 172 (507)
+..+..+.... ++... ...++++..+ ..+.++++
T Consensus 440 --------------------------~~~~~~~~~~~-------i~~~~~~~~~~v~i~~~---------~~v~~~~~-- 475 (729)
T 1o94_A 440 --------------------------WSYHRDYRETQ-------ITKLLKKNKESQLALGQ---------KPMTADDV-- 475 (729)
T ss_dssp --------------------------GHHHHHHHHHH-------HHHHHHHSTTCEEECSC---------CCCCHHHH--
T ss_pred --------------------------HHHHHHHHHHH-------HHHhhcccCCceEEEeC---------eEEehhhc--
Confidence 11111111111 11111 1124444322 12333333
Q ss_pred EEEEeCeEEEccCCCC----------CCCCCCccCCceEecchhhcccc-CCCCeEEEEc--CcHHHHHHHHHHHhcCCe
Q 010573 173 TVVKGKNIIIATGSDV----------KSLPGITIDEKRIVSSTGALALN-EVPKKLVVIG--AGYIGLEMGSVWARLGSE 239 (507)
Q Consensus 173 ~~~~~d~lvlAtG~~p----------~~~pg~~~~~~~~~~~~~~~~~~-~~~~~vvVvG--~G~~g~e~A~~l~~~g~~ 239 (507)
..+.||+||||||+.| +.+||.......+++..+++... ..+++|+||| +|.+|+|+|..|++.|.+
T Consensus 476 ~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~ 555 (729)
T 1o94_A 476 LQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHE 555 (729)
T ss_dssp HTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCE
T ss_pred cccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCE
Confidence 3578999999999973 23455432134577777765543 3468999999 999999999999999999
Q ss_pred eEEEcccCccCC--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCC----------------CceE
Q 010573 240 VTVVEFAADIVP--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG----------------GEKT 301 (507)
Q Consensus 240 Vtlv~~~~~~~~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~----------------g~~~ 301 (507)
|+++++.+ +++ .++.. ...+.+.+++.||++++++.+++++. +++.+......+ ++..
T Consensus 556 Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (729)
T 1o94_A 556 VTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHR 631 (729)
T ss_dssp EEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCE
T ss_pred EEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcce
Confidence 99999988 544 12322 45677888999999999999999963 455444311000 1123
Q ss_pred EEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCCC
Q 010573 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHG 381 (507)
Q Consensus 302 ~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~~ 381 (507)
++++|.||+|+|.+|++.+ ++.++ ..+|++++|++|+|||+|||+. +..+..|+.||+.||.+|.+.
T Consensus 632 ~i~aD~Vv~a~G~~p~~~l--~~~l~--------~~vd~~~~t~~~~VyAiGD~~~-~~~~~~A~~~G~~aA~~i~~~-- 698 (729)
T 1o94_A 632 WIEFDSLVLVTGRHSECTL--WNELK--------ARESEWAENDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEEA-- 698 (729)
T ss_dssp EEECSEEEEESCEEECCHH--HHHHH--------HTGGGTGGGTCCEEEECGGGTS-CCCHHHHHHHHHHHHHTTTSS--
T ss_pred eeeCCEEEECCCCCCChHH--HHHHh--------hhcccccccCCCCeEEEeCccc-hhhHHHHHHHHHHHHHHhhhh--
Confidence 4999999999999999875 33321 1378899999999999999986 556778999999999999764
Q ss_pred CCCCCCccE
Q 010573 382 HVDYDKVPG 390 (507)
Q Consensus 382 ~~~~~~~p~ 390 (507)
..+..+|+
T Consensus 699 -l~~~~~p~ 706 (729)
T 1o94_A 699 -NPQIAIPY 706 (729)
T ss_dssp -CTTSCCCC
T ss_pred -cccCCCCe
Confidence 34455563
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=278.34 Aligned_cols=281 Identities=17% Similarity=0.216 Sum_probs=200.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.+||+||||||||+++|..|++.| ++|+|||+++.+||.+ +.++.|.+....
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~-~~g~~p~~~~~~------------------------- 59 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV-RFGVAPDHPEVK------------------------- 59 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH-HHTSCTTCGGGG-------------------------
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCcee-ecccCCCCccHH-------------------------
Confidence 579999999999999999999988 9999999988888754 444544321100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCC-C--CCCCCccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDV-K--SLPGITID 197 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p-~--~~pg~~~~ 197 (507)
.+...+..++++.+++++.+... . . .|.+.+ ..+.||+||||||+.| . .+||..
T Consensus 60 -------------~~~~~~~~~~~~~gv~~~~~~~v--~-~--~V~~~~---~~~~~d~lVlAtGs~~~~~~~ipG~~-- 116 (460)
T 1cjc_A 60 -------------NVINTFTQTARSDRCAFYGNVEV--G-R--DVTVQE---LQDAYHAVVLSYGAEDHQALDIPGEE-- 116 (460)
T ss_dssp -------------GHHHHHHHHHTSTTEEEEBSCCB--T-T--TBCHHH---HHHHSSEEEECCCCCEECCCCCTTTT--
T ss_pred -------------HHHHHHHHHHHhCCcEEEeeeEE--e-e--EEEecc---ceEEcCEEEEecCcCCCCCCCCCCCC--
Confidence 01122345566778888766322 1 1 122222 2368999999999985 3 455543
Q ss_pred CceEecchhhcc----------cc-C-CCCeEEEEcCcHHHHHHHHHHH--------------------hcCC-eeEEEc
Q 010573 198 EKRIVSSTGALA----------LN-E-VPKKLVVIGAGYIGLEMGSVWA--------------------RLGS-EVTVVE 244 (507)
Q Consensus 198 ~~~~~~~~~~~~----------~~-~-~~~~vvVvG~G~~g~e~A~~l~--------------------~~g~-~Vtlv~ 244 (507)
...+++..++.. +. . .+++++|||+|++|+|+|..|. +.|. +|+++.
T Consensus 117 ~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~ 196 (460)
T 1cjc_A 117 LPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVG 196 (460)
T ss_dssp STTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEEC
T ss_pred CCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEE
Confidence 345666655521 11 1 4799999999999999999998 5677 799999
Q ss_pred ccCcc--------------CCCC-------------------CHH---HHHHHHHHHHh--------------cCcEEEc
Q 010573 245 FAADI--------------VPSM-------------------DGE---IRKQFQRSLEK--------------QKMKFML 274 (507)
Q Consensus 245 ~~~~~--------------~~~~-------------------d~~---~~~~~~~~l~~--------------~Gv~i~~ 274 (507)
|++.+ ++.. ++. +.+.+.+.+++ .||++++
T Consensus 197 r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~ 276 (460)
T 1cjc_A 197 RRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRF 276 (460)
T ss_dssp SSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEEC
T ss_pred cCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEEC
Confidence 98765 2210 110 23344445555 8999999
Q ss_pred CceEEEEEEcC-C-eE-EEEEeec------------CCCceEEEEcCEEEEeecCCCCCCCCCCcccCc-eecCCCCeec
Q 010573 275 KTKVVGVDLSG-D-GV-KLTLEPA------------AGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV-ETDKMGRIPV 338 (507)
Q Consensus 275 ~~~v~~i~~~~-~-~v-~v~~~~~------------~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl-~~~~~G~i~V 338 (507)
++.++++..++ + .+ .+++... .+|+.+++++|.||+++|++|+. . .|+ +++++|+|.|
T Consensus 277 ~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l-----~gl~~~d~~g~i~v 350 (460)
T 1cjc_A 277 FRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I-----DPSVPFDPKLGVVP 350 (460)
T ss_dssp SEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C-----CTTSCCBTTTTBCC
T ss_pred CCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C-----CCCcccccCCCeeE
Confidence 99999998763 3 23 2443311 02334689999999999999987 2 367 7888899999
Q ss_pred CCCCCCC-CCCeEEecCCCCCCC-cHhHHHHHHHHHHHHHcC
Q 010573 339 NERFATN-IPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 339 d~~~~t~-~~~IyA~GD~a~~~~-~~~~A~~~g~~aa~~i~~ 378 (507)
|+++||+ +|+|||+|||+.+|. ....|+.+|+.+|.+|++
T Consensus 351 n~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~ 392 (460)
T 1cjc_A 351 NMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQ 392 (460)
T ss_dssp EETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 9999998 799999999997665 467899999999999974
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=269.57 Aligned_cols=308 Identities=15% Similarity=0.171 Sum_probs=200.5
Q ss_pred CcEEEECCChHHHHHHHHHHH---CCCc---EEEEecCCCCCceeccc---cccchhhhhhhhHHHHHHHhhhhhCCccc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQ---LGLK---TTCIEKRGALGGTCLNV---GCIPSKALLHSSHMYHEAMHSFASHGVKF 114 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~---~g~~---V~lie~~~~~GG~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~g~~~ 114 (507)
+||+|||||+||++||..|++ .|++ |+|||+++.+||.|.+. +|.|...... ...|..+........+.+
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~-~~~y~~l~~~~~~~~~~~ 81 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVH-SSMYRYLWSNGPKECLEF 81 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCC-CCCCTTCBCSSCGGGTCB
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCc-CccccchhhcCChhhccc
Confidence 699999999999999999999 9999 99999999999999763 3332110000 000000000000000000
Q ss_pred CccccChHHHHH---HHHHHHHHHHHHHHHHHHhCCcE--EEEe-EEEEec--CC--EEEEEccC---CceEEEEeCeEE
Q 010573 115 SSVEVDLPAMMA---QKDKAVSNLTRGIEGLFKKNKVT--YVKG-YGKFIS--PS--EVSVDTIE---GGNTVVKGKNII 181 (507)
Q Consensus 115 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~d--~~--~~~v~~~~---g~~~~~~~d~lv 181 (507)
. .+.+..-.. ........+..++....++.+++ +..+ .+..++ .+ .+.|.+.+ |+..++.||+||
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VV 159 (464)
T 2xve_A 82 A--DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159 (464)
T ss_dssp T--TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred C--CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEE
Confidence 0 011110000 00000122333344455555665 5444 444442 22 45565543 434678999999
Q ss_pred EccC--CCCC--CCCCCccCCceEecchhhcccc-CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHH
Q 010573 182 IATG--SDVK--SLPGITIDEKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE 256 (507)
Q Consensus 182 lAtG--~~p~--~~pg~~~~~~~~~~~~~~~~~~-~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~ 256 (507)
+||| +.|. .+||.......++++.++.... ..+++|+|||+|.+|+|+|..|++.|.+|+++++++.+++..-
T Consensus 160 vAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~-- 237 (464)
T 2xve_A 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKW-- 237 (464)
T ss_dssp ECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCC--
T ss_pred ECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCC--
Confidence 9999 7774 3556543223345555544332 3589999999999999999999999999999999887765321
Q ss_pred HHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCe
Q 010573 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRI 336 (507)
Q Consensus 257 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i 336 (507)
..||+++ ..|++++ +++ +++. +++++++|.||+|+|++|+++++. +..+++++++|.+
T Consensus 238 ----------~~~V~~~--~~V~~i~--~~~--V~~~-----dG~~i~~D~Vi~atG~~p~~~~l~-~~~gl~~~~~~~v 295 (464)
T 2xve_A 238 ----------PENWDER--PNLVRVD--TEN--AYFA-----DGSSEKVDAIILCTGYIHHFPFLN-DDLRLVTNNRLWP 295 (464)
T ss_dssp ----------CTTEEEC--SCEEEEC--SSE--EEET-----TSCEEECSEEEECCCBCCCCTTBC-TTTCCCCCSSSCC
T ss_pred ----------CCceEEc--CCeEEEe--CCE--EEEC-----CCCEEeCCEEEECCCCCCCCCCcC-cccccccCCCccc
Confidence 2478876 7888884 344 4454 456899999999999999998863 3467887765555
Q ss_pred ecCCC---CCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 337 PVNER---FATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 337 ~Vd~~---~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
++.+ ++|+.|+|||+||++.. .....|..||+.+|+++.|..
T Consensus 296 -~~~~~~~~~t~~p~i~aiGd~~~~-~~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 296 -LNLYKGVVWEDNPKFFYIGMQDQW-YSFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp -SSEETTTEESSSTTEEECSCSCCS-SCHHHHHHHHHHHHHHHTTSS
T ss_pred -ccccceEecCCCCCEEEEeCcccc-cchHHHHHHHHHHHHHHcCCC
Confidence 4433 56899999999999865 468899999999999999863
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=266.01 Aligned_cols=316 Identities=15% Similarity=0.181 Sum_probs=204.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-----CcEEEEecCCCCCceecccccc-chhhhh-----------hhhHHHHHHH
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLG-----LKTTCIEKRGALGGTCLNVGCI-PSKALL-----------HSSHMYHEAM 104 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g-----~~V~lie~~~~~GG~~~~~~~~-p~~~~~-----------~~~~~~~~~~ 104 (507)
..|||+|||||+||+++|..|++.| .+|+|||+++.+|... +.+ |...+. .+... ..+.
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~---~~~~~~~~~~~~~~~~l~~~~~p~~~-~~~~ 104 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG---NTLVSQSELQISFLKDLVSLRNPTSP-YSFV 104 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG---GGCCSSCBCSSCTTSSSSTTTCTTCT-TSHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC---CCCCCCCcCCcchhhccccccCCCCC-CChh
Confidence 4579999999999999999999999 9999999988777221 111 110000 00000 0000
Q ss_pred hhhhhCCc-----ccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecC----CE---EEEEccCC-
Q 010573 105 HSFASHGV-----KFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP----SE---VSVDTIEG- 170 (507)
Q Consensus 105 ~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~----~~---~~v~~~~g- 170 (507)
.++...+. ........ ...+..++....++.++++..+. +..++. .. +.|.+.++
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~ 173 (463)
T 3s5w_A 105 NYLHKHDRLVDFINLGTFYPC-----------RMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNAD 173 (463)
T ss_dssp HHHHHTTCHHHHHHHCCSCCB-----------HHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred HhhhhcCceeecccccCCCCC-----------HHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCC
Confidence 00000000 00000000 12233334455556677777764 555443 22 35655544
Q ss_pred -ceEEEEeCeEEEccCCCCCCCCCCc-cCCc-eEecchhh-ccccC------CCCeEEEEcCcHHHHHHHHHHHhc--CC
Q 010573 171 -GNTVVKGKNIIIATGSDVKSLPGIT-IDEK-RIVSSTGA-LALNE------VPKKLVVIGAGYIGLEMGSVWARL--GS 238 (507)
Q Consensus 171 -~~~~~~~d~lvlAtG~~p~~~pg~~-~~~~-~~~~~~~~-~~~~~------~~~~vvVvG~G~~g~e~A~~l~~~--g~ 238 (507)
+..++.||+||+|||+.|..+++.. ..+. .+++..+. ..... .+++|+|||+|.+|+|+|..|.+. +.
T Consensus 174 g~~~~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~ 253 (463)
T 3s5w_A 174 GEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSV 253 (463)
T ss_dssp SCEEEEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTE
T ss_pred CceEEEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCC
Confidence 2348999999999999876444332 2232 34433332 22222 489999999999999999999999 89
Q ss_pred eeEEEcccCccCCCC--------------------CHHHHHHHHHHHHh--------------------------cCcEE
Q 010573 239 EVTVVEFAADIVPSM--------------------DGEIRKQFQRSLEK--------------------------QKMKF 272 (507)
Q Consensus 239 ~Vtlv~~~~~~~~~~--------------------d~~~~~~~~~~l~~--------------------------~Gv~i 272 (507)
+|++++|.+.+++.. +++....+.+.+.. .||++
T Consensus 254 ~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i 333 (463)
T 3s5w_A 254 QADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAF 333 (463)
T ss_dssp EEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEE
T ss_pred eEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 999999998775522 22222333333222 59999
Q ss_pred EcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC--CCCCCCcccCceecCCCCeecCCCCCCC-----
Q 010573 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF--TAGLGLDKIGVETDKMGRIPVNERFATN----- 345 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~--~~~l~~~~~gl~~~~~G~i~Vd~~~~t~----- 345 (507)
++++.|++++.+++++.+++.+..+|+..++++|.||+|+|++|+ ..+ ++.....+ |++.||+++++.
T Consensus 334 ~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~--l~~l~~~~---g~i~v~~~~~~~~~~~~ 408 (463)
T 3s5w_A 334 RCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQL--LEPLAEYL---GDHEIGRDYRLQTDERC 408 (463)
T ss_dssp ETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTT--TGGGGGGB---C--CCCTTSBCCBCTTB
T ss_pred EeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccch--hHHHHHHh---CCcccCcccccccCCCC
Confidence 999999999988888888887655666677999999999999999 444 34433332 789999999864
Q ss_pred CCCeEEecCCC-----CCCCcHhHHHHHHHHHHHHHc
Q 010573 346 IPGVYAIGDVI-----PGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 346 ~~~IyA~GD~a-----~~~~~~~~A~~~g~~aa~~i~ 377 (507)
.|+|||+|||. ..+.+...|.+++.+++..+-
T Consensus 409 ~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 409 KVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp CSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 46799999998 346688899999998877664
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-33 Score=278.39 Aligned_cols=284 Identities=17% Similarity=0.207 Sum_probs=202.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
++|||||||+||++||.+|++.+ .+|+|||+++.....+. ... +............+.
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~------~~~--------------v~~g~~~~~~~~~~~ 62 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYM------SNE--------------VIGGDRELASLRVGY 62 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTT------HHH--------------HHHTSSCGGGGEECS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccC------HHH--------------HhcCCCCHHHHhhCH
Confidence 57999999999999999999875 68999999654321110 000 000111111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC--CCCCCccCC-
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK--SLPGITIDE- 198 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~--~~pg~~~~~- 198 (507)
+.+...+++++.+++..+|++...+.+.+| .++.||+||+|||+++. .+||.....
T Consensus 63 -------------------~~~~~~gv~~i~~~v~~id~~~~~v~~~~g--~~i~yd~LviAtG~~~~~~~i~G~~e~~~ 121 (401)
T 3vrd_B 63 -------------------DGLRAHGIQVVHDSALGIDPDKKLVKTAGG--AEFAYDRCVVAPGIDLLYDKIEGYSEALA 121 (401)
T ss_dssp -------------------HHHHHTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECGGGSBTCCSGGG
T ss_pred -------------------HHHHHCCCEEEEeEEEEEEccCcEEEeccc--ceeecceeeeccCCccccCCccCchhhcc
Confidence 223456899999999999998888888888 78999999999999874 566654211
Q ss_pred -ce---Eecchhhcccc------CCCCeEEEEcCc----------HHHHHHHHHHHhcC--CeeEEEcccCccC--CCCC
Q 010573 199 -KR---IVSSTGALALN------EVPKKLVVIGAG----------YIGLEMGSVWARLG--SEVTVVEFAADIV--PSMD 254 (507)
Q Consensus 199 -~~---~~~~~~~~~~~------~~~~~vvVvG~G----------~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--~~~d 254 (507)
.. ..+.++...+. ..+..+++.+++ ..+++++..+.+.+ .+|++++..+.+. +.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 201 (401)
T 3vrd_B 122 AKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFT 201 (401)
T ss_dssp GTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHH
T ss_pred cCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEccccccccccccc
Confidence 11 12223332221 123344443221 14556677776665 6899999887763 3566
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G 334 (507)
+.+.+.+.+.+++.||++++++.+..++.+.+...+++. +++++++|.+++++|.+|+.. ++..++ .+++|
T Consensus 202 ~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~-----~g~~i~~D~vi~~~g~~~~~~---~~~~gl-~~~~G 272 (401)
T 3vrd_B 202 KGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETS-----FGETFKAAVINLIPPQRAGKI---AQSASL-TNDSG 272 (401)
T ss_dssp HHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEET-----TSCEEECSEEEECCCEEECHH---HHHTTC-CCTTS
T ss_pred HHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcC-----CCcEEEeeEEEEecCcCCchh---Hhhccc-cccCC
Confidence 777777778888999999999999999887777677664 567899999999999999743 567777 46789
Q ss_pred CeecCCC-CC-CCCCCeEEecCCCCC---CCcHhHHHHHHHHHHHHHc
Q 010573 335 RIPVNER-FA-TNIPGVYAIGDVIPG---PMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 335 ~i~Vd~~-~~-t~~~~IyA~GD~a~~---~~~~~~A~~~g~~aa~~i~ 377 (507)
+|.||++ +| |++|||||+|||+.. |++++.|.+||+++|+||+
T Consensus 273 ~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 273 WCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV 320 (401)
T ss_dssp SBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred CEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 9999987 66 899999999999853 5689999999999999997
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=292.24 Aligned_cols=281 Identities=17% Similarity=0.211 Sum_probs=199.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..+||+||||||||++||.+|++.|++|+|||+++.+||+|.+ | |...+ ... ..
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~--~-~k~~i-~~~----------------------~~ 180 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLD--T-AGEQI-DGM----------------------DS 180 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGG--S-SCCEE-TTE----------------------EH
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceecc--C-Ccccc-CCC----------------------CH
Confidence 4589999999999999999999999999999999899999873 2 21000 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeE-EEEecCCEEE--EE---------cc----CCceEEEEeCeEEEcc
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGY-GKFISPSEVS--VD---------TI----EGGNTVVKGKNIIIAT 184 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~d~~~~~--v~---------~~----~g~~~~~~~d~lvlAt 184 (507)
. .+.....+.+.+ .+++++.+. +..++.+... +. .. ++....+.||+|||||
T Consensus 181 ---~--------~~~~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlAT 249 (965)
T 2gag_A 181 ---S--------AWIEQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLAT 249 (965)
T ss_dssp ---H--------HHHHHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECC
T ss_pred ---H--------HHHHHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECC
Confidence 0 001111222333 488888763 4444433211 11 00 1222579999999999
Q ss_pred CCCCC--CCCCCccCCceEecchhhcc----ccC-CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHH
Q 010573 185 GSDVK--SLPGITIDEKRIVSSTGALA----LNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEI 257 (507)
Q Consensus 185 G~~p~--~~pg~~~~~~~~~~~~~~~~----~~~-~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~ 257 (507)
|+.|. .+||.+ ...+++..++.. ... .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .
T Consensus 250 Gs~p~~~~ipG~~--~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~----~- 322 (965)
T 2gag_A 250 GAHERPIVFENND--RPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA----A- 322 (965)
T ss_dssp CEEECCCCCBTCC--STTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH----H-
T ss_pred CCccCCCCCCCCC--CCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch----h-
Confidence 99774 345544 344666543322 112 258999999999999999999999999999999887642 2
Q ss_pred HHHHHHHHHhcCcEEEcCceEEEEEEc-CCeE-EEEEee--cC--CCceEEEEcCEEEEeecCCCCCCCCCCcccCceec
Q 010573 258 RKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGV-KLTLEP--AA--GGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331 (507)
Q Consensus 258 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v-~v~~~~--~~--~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~ 331 (507)
.+.+++.||++++++.+++++.+ ++++ .+++.+ .. +|+.+++++|.|++++|++|+++++ +.
T Consensus 323 ----~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~--~~------ 390 (965)
T 2gag_A 323 ----AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLH--SQ------ 390 (965)
T ss_dssp ----HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHH--HH------
T ss_pred ----HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHH--Hh------
Confidence 56678899999999999999873 3333 455543 10 1233789999999999999998752 22
Q ss_pred CCCCeecCCCCC-----CCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCC
Q 010573 332 KMGRIPVNERFA-----TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 332 ~~G~i~Vd~~~~-----t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
..|.|.+|++++ |++|+|||+|||++.+.+. .|..||+.||.+|++.
T Consensus 391 ~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l~-~A~~~G~~aA~~i~~~ 442 (965)
T 2gag_A 391 RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDTA-SALSTGAATGAAAATA 442 (965)
T ss_dssp TTCCEEEETTTTEEEECSCCTTEEECGGGGTCCSHH-HHHHHHHHHHHHHHHH
T ss_pred CCCcEEEcCcccccccCCCCCCEEEEEecCCchhHH-HHHHHHHHHHHHHHHH
Confidence 246799999887 8999999999999887765 8999999999999743
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-31 Score=265.96 Aligned_cols=301 Identities=13% Similarity=0.092 Sum_probs=195.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCC--cEEEEecCCCCCceecccccc------chhhh-------hh-------hhH
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCI------PSKAL-------LH-------SSH 98 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~------p~~~~-------~~-------~~~ 98 (507)
...+||+|||||++|+++|..|++.|. +|+|||+++.+||.|.+.++. |.... .. ...
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~ 83 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 83 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCc
Confidence 346899999999999999999999999 999999988999999877652 21100 00 000
Q ss_pred HHHHHH----hhhhhC-CcccCc--cc-cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEe--cCCEEEEEc
Q 010573 99 MYHEAM----HSFASH-GVKFSS--VE-VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDT 167 (507)
Q Consensus 99 ~~~~~~----~~~~~~-g~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--d~~~~~v~~ 167 (507)
.+..+. ..+..+ +..+.. .. .... .+..++....++.+..+..+ .+..+ +.+.+.|.+
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~ 152 (447)
T 2gv8_A 84 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRH-----------TIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTY 152 (447)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHH-----------HHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEE
T ss_pred hhhhhccCCCHHHhccCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEE
Confidence 000000 000000 111100 00 1111 12222333333334444443 34433 344556665
Q ss_pred cC---Cc-eEEEEeCeEEEccCC--CCC--CCCCCccC----CceEecchhhcccc-CCCCeEEEEcCcHHHHHHHHHHH
Q 010573 168 IE---GG-NTVVKGKNIIIATGS--DVK--SLPGITID----EKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWA 234 (507)
Q Consensus 168 ~~---g~-~~~~~~d~lvlAtG~--~p~--~~pg~~~~----~~~~~~~~~~~~~~-~~~~~vvVvG~G~~g~e~A~~l~ 234 (507)
.+ |+ ..++.||+||+|||. .|. .+||.... ...++++.++.... ..+++|+|||+|.+|+|+|..|+
T Consensus 153 ~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~ 232 (447)
T 2gv8_A 153 KGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLT 232 (447)
T ss_dssp EESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHT
T ss_pred eecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHH
Confidence 54 53 347999999999998 553 34554310 11255555544333 25899999999999999999999
Q ss_pred hcCCe-eEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEE-EEcCEEEEee
Q 010573 235 RLGSE-VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTI-LEADVVLVSA 312 (507)
Q Consensus 235 ~~g~~-Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~-i~~D~vi~a~ 312 (507)
+.+.+ |+++++.+.+ ++..||.+ +..|++++.+++. +++. +++. +++|.||+|+
T Consensus 233 ~~~~~~V~l~~r~~~~---------------l~~~~i~~--~~~v~~~~~~~~~--v~~~-----dG~~~~~~D~vi~at 288 (447)
T 2gv8_A 233 PVAKHPIYQSLLGGGD---------------IQNESLQQ--VPEITKFDPTTRE--IYLK-----GGKVLSNIDRVIYCT 288 (447)
T ss_dssp TTSCSSEEEECTTCCS---------------CBCSSEEE--ECCEEEEETTTTE--EEET-----TTEEECCCSEEEECC
T ss_pred HHhCCcEEEEeCCCCc---------------CCCCCeEE--ecCeEEEecCCCE--EEEC-----CCCEeccCCEEEECC
Confidence 99999 9999998764 34567774 5778888644443 4554 3445 7999999999
Q ss_pred cCCCCCCC-----CCCcccCceecCCCCeecCCCCC---CCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCC
Q 010573 313 GRTPFTAG-----LGLDKIGVETDKMGRIPVNERFA---TNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 313 G~~p~~~~-----l~~~~~gl~~~~~G~i~Vd~~~~---t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
|++|++++ +.....++.. ++.+.++.+.+ ++.|+||++||+.... .++.|..||+++|.++.|.
T Consensus 289 G~~~~~~~l~~~~l~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-~~~~a~~qa~~~a~~~~g~ 360 (447)
T 2gv8_A 289 GYLYSVPFPSLAKLKSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLALHVV-PFPTSQAQAAFLARVWSGR 360 (447)
T ss_dssp CBCCCCCCHHHHSCCSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCBSSC-HHHHHHHHHHHHHHHHTTS
T ss_pred CCCcCCCCCcccccccccCceec--CCCcccccccccccCCCCcEEEEecccccc-CchHHHHHHHHHHHHHcCC
Confidence 99999987 5311113333 35666776666 7899999999998764 7889999999999999976
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=275.96 Aligned_cols=277 Identities=21% Similarity=0.275 Sum_probs=201.3
Q ss_pred cccccccccceeeeeeccccccCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhh
Q 010573 16 RNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLH 95 (507)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~ 95 (507)
.|..||..+++..+. ..+....+||+|||||+||++||..|++.|++|+|||+++.+||++....++|.+.
T Consensus 352 ~C~~np~~~~e~~~~------~~~~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~--- 422 (671)
T 1ps9_A 352 SCLVNPRACHETKMP------ILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKE--- 422 (671)
T ss_dssp CCSSCTTTTCTTTSC------CCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCT---
T ss_pred EEEeCcccccccccC------CCCCCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHH---
Confidence 478888888775432 23345568999999999999999999999999999999989999876554444321
Q ss_pred hhHHHHHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEE
Q 010573 96 SSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVV 175 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~ 175 (507)
++. .+..++...+++.+++++.++.... ..+
T Consensus 423 ------------------------~~~-----------~~~~~~~~~~~~~gv~~~~~~~v~~--------------~~~ 453 (671)
T 1ps9_A 423 ------------------------EFY-----------ETLRYYRRMIEVTGVTLKLNHTVTA--------------DQL 453 (671)
T ss_dssp ------------------------THH-----------HHHHHHHHHHHHHTCEEEESCCCCS--------------SSS
T ss_pred ------------------------HHH-----------HHHHHHHHHHHHcCCEEEeCcEecH--------------HHh
Confidence 010 1111233455667888887653211 113
Q ss_pred -EeCeEEEccCCCCCC--CCCCccCCceEecchhhcccc-CCCCeEEEEcCcHHHHHHHHHHHhcCC-------------
Q 010573 176 -KGKNIIIATGSDVKS--LPGITIDEKRIVSSTGALALN-EVPKKLVVIGAGYIGLEMGSVWARLGS------------- 238 (507)
Q Consensus 176 -~~d~lvlAtG~~p~~--~pg~~~~~~~~~~~~~~~~~~-~~~~~vvVvG~G~~g~e~A~~l~~~g~------------- 238 (507)
.||+||||||++|.. +||.. ...+++..+.+... ..+++|+|||+|.+|+|+|..|++.|.
T Consensus 454 ~~~d~lviAtG~~p~~~~i~G~~--~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~ 531 (671)
T 1ps9_A 454 QAFDETILASGIVPRTPPIDGID--HPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEW 531 (671)
T ss_dssp CCSSEEEECCCEEECCCCCBTTT--STTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHT
T ss_pred hcCCEEEEccCCCcCCCCCCCCC--CCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhh
Confidence 799999999998854 44443 34566666655433 358999999999999999999998874
Q ss_pred ------------------------eeEEEcccCccC-CCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEe
Q 010573 239 ------------------------EVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLE 293 (507)
Q Consensus 239 ------------------------~Vtlv~~~~~~~-~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~ 293 (507)
+|+++++.+..+ ..+++.....+.+.|++.||++++++.+++++ ++++.++ .
T Consensus 532 g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~ 608 (671)
T 1ps9_A 532 GIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-I 608 (671)
T ss_dssp TBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-E
T ss_pred cccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-c
Confidence 455666655443 35677777788899999999999999999996 4455543 2
Q ss_pred ecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCC-CcHhHHHHHHHHH
Q 010573 294 PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP-MLAHKAEEDGVAC 372 (507)
Q Consensus 294 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~-~~~~~A~~~g~~a 372 (507)
+|+.+++++|.||+|+|++|+++++ +.+ .. ..++||++|||+... ..+..|++||..+
T Consensus 609 ---~G~~~~i~~D~Vi~a~G~~p~~~l~--~~l----~~------------~g~~v~aiGD~~~~~~~~~~~A~~~g~~a 667 (671)
T 1ps9_A 609 ---NGETQVLAVDNVVICAGQEPNRALA--QPL----ID------------SGKTVHLIGGCDVAMELDARRAIAQGTRL 667 (671)
T ss_dssp ---TTEEEEECCSEEEECCCEEECCTTH--HHH----HT------------TTCCEEECGGGTCCSSCCHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCEEEECCCccccHHHH--HHH----Hh------------cCCCEEEECCcCccCchhHHHHHHHHHHH
Confidence 3344689999999999999998752 221 11 237999999998654 3689999999999
Q ss_pred HHHH
Q 010573 373 VEFL 376 (507)
Q Consensus 373 a~~i 376 (507)
|.||
T Consensus 668 A~~i 671 (671)
T 1ps9_A 668 ALEI 671 (671)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9986
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=258.99 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=182.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..+||+|||||+||++||.+|++. ++|+|||+++.+||.+...... .+++.. +.
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~--------------------~~g~~~-----~~ 160 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIK--------------------QEGFNK-----DS 160 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSE--------------------ETTTTE-----EH
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccc--------------------cCCCCC-----CH
Confidence 357999999999999999999999 9999999998999986542110 011100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEc-cCCceEEEEeCeEEEccCCCCCC--CCCCc
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDT-IEGGNTVVKGKNIIIATGSDVKS--LPGIT 195 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~-~~g~~~~~~~d~lvlAtG~~p~~--~pg~~ 195 (507)
. .+...+.+.+ ..+++++.+. +..++ ...+.+.. .+++...+.||+||||||+.|.. +|+.+
T Consensus 161 ~-----------~~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~ 228 (493)
T 1y56_A 161 R-----------KVVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENND 228 (493)
T ss_dssp H-----------HHHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTT
T ss_pred H-----------HHHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCC
Confidence 0 1111122223 5578876653 33333 22333332 34434579999999999998753 45543
Q ss_pred cCCceEecchhhcccc-----CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCc
Q 010573 196 IDEKRIVSSTGALALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~-----~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
...+++..++..+. ..+++++|+|+|++|+| +.+++.||
T Consensus 229 --~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle----------------------------------~~l~~~GV 272 (493)
T 1y56_A 229 --MPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI----------------------------------QELERWGI 272 (493)
T ss_dssp --STTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH----------------------------------HHHHHHTC
T ss_pred --CCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH----------------------------------HHHHhCCc
Confidence 33466665554321 23589999999999988 45677899
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCcee--cCCCCee-cCCCCCCCCC
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVET--DKMGRIP-VNERFATNIP 347 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~--~~~G~i~-Vd~~~~t~~~ 347 (507)
++++++.|++++.+++...+.+. +++++++|.|++|+|++|++++ ++.+|+++ +++|+|. ||++++ +.|
T Consensus 273 ~v~~~~~v~~i~~~~~v~~v~~~-----~g~~i~aD~Vv~a~G~~p~~~l--~~~~g~~~~~~~~g~i~~vd~~~~-s~~ 344 (493)
T 1y56_A 273 DYVHIPNVKRVEGNEKVERVIDM-----NNHEYKVDALIFADGRRPDINP--ITQAGGKLRFRRGYYSPVLDEYHR-IKD 344 (493)
T ss_dssp EEEECSSEEEEECSSSCCEEEET-----TCCEEECSEEEECCCEEECCHH--HHHTTCCEEEETTEEEECCCTTSE-EET
T ss_pred EEEeCCeeEEEecCCceEEEEeC-----CCeEEEeCEEEECCCcCcCchH--HHhcCCCccccCCceeeccccccC-cCC
Confidence 99999999999865543344443 4578999999999999999976 56666554 5678887 899999 999
Q ss_pred CeEEecCCCCCCCcHhHHHHHHHHHHHHHcCC
Q 010573 348 GVYAIGDVIPGPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 348 ~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
+|||+|||++.+ ++..|..||+.||.+|.+.
T Consensus 345 ~vya~GD~~~~~-~~~~A~~~g~~aa~~i~~~ 375 (493)
T 1y56_A 345 GIYVAGSAVSIK-PHYANYLEGKLVGAYILKE 375 (493)
T ss_dssp TEEECSTTTCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeccCCcc-CHHHHHHHHHHHHHHHHHH
Confidence 999999999754 6889999999999999864
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=249.56 Aligned_cols=302 Identities=21% Similarity=0.279 Sum_probs=197.5
Q ss_pred CCcEEEECCChHHHHHHHHHH-HCCCcEEEEecCCCCCceeccc---cc---cchhhhhhhhHHHHHHHhhhhhCCcccC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAA-QLGLKTTCIEKRGALGGTCLNV---GC---IPSKALLHSSHMYHEAMHSFASHGVKFS 115 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~-~~g~~V~lie~~~~~GG~~~~~---~~---~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 115 (507)
.+||+|||||++|+++|..|+ +.|++|+|||+++.+||+|... +| +|+..+..... .... ....+.
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~--~~~~---~~~~~~-- 80 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFD--RDLL---QESTWK-- 80 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSC--HHHH---HHCCCS--
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccc--cccc---cCCCCc--
Confidence 479999999999999999999 8899999999999999998643 33 34332221110 0000 111111
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEe--cC--CEEEEEccCCceEEEEeCeEEEccC--C
Q 010573 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV--TYVKG-YGKFI--SP--SEVSVDTIEGGNTVVKGKNIIIATG--S 186 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~~--d~--~~~~v~~~~g~~~~~~~d~lvlAtG--~ 186 (507)
....+.. .+..++....++.++ ++..+ .+..+ +. ..+.|.+.+| .++.||+||+||| +
T Consensus 81 ~~~~~~~-----------ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G--~~i~ad~lV~AtG~~s 147 (540)
T 3gwf_A 81 TTYITQP-----------EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG--EVYRAKYVVNAVGLLS 147 (540)
T ss_dssp BSEEEHH-----------HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS--CEEEEEEEEECCCSCC
T ss_pred ccCCCHH-----------HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC--CEEEeCEEEECCcccc
Confidence 1111111 223334455556666 55544 33332 22 3678888887 5789999999999 5
Q ss_pred CCC--CCCCCc-cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCCCCH----HHH
Q 010573 187 DVK--SLPGIT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDG----EIR 258 (507)
Q Consensus 187 ~p~--~~pg~~-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~d~----~~~ 258 (507)
.|. .+||.+ ..+..+++..........+++|+|||+|.+|+|+|..|++.+.+||+++|.+.+ ++.+++ ...
T Consensus 148 ~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~ 227 (540)
T 3gwf_A 148 AINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQI 227 (540)
T ss_dssp SBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHH
T ss_pred cCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHH
Confidence 663 466765 334456666655556667999999999999999999999999999999999984 444332 222
Q ss_pred HHHHH-------------------------------------------------------------------------H-
Q 010573 259 KQFQR-------------------------------------------------------------------------S- 264 (507)
Q Consensus 259 ~~~~~-------------------------------------------------------------------------~- 264 (507)
+.+++ .
T Consensus 228 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (540)
T 3gwf_A 228 AEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKV 307 (540)
T ss_dssp HHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 21110 0
Q ss_pred --------------------------------HHhcCcEEEc--CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEE
Q 010573 265 --------------------------------LEKQKMKFML--KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310 (507)
Q Consensus 265 --------------------------------l~~~Gv~i~~--~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~ 310 (507)
+.+.+|+++. ...|+++. ++++. +. +++++++|.||+
T Consensus 308 ~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it--~~gv~--~~-----dG~~~~~DvIV~ 378 (540)
T 3gwf_A 308 AEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVT--AKGVV--TE-----DGVLHELDVLVF 378 (540)
T ss_dssp HHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEEC--SSEEE--ET-----TCCEEECSEEEE
T ss_pred HHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEe--cCeEE--cC-----CCCEEECCEEEE
Confidence 1144788875 67888884 45543 32 678899999999
Q ss_pred eecCCCCCCCCCCcccCceecCCCCeecCC----------CCC-CCCCCeEEe-cCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 311 SAGRTPFTAGLGLDKIGVETDKMGRIPVNE----------RFA-TNIPGVYAI-GDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 311 a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~----------~~~-t~~~~IyA~-GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
|||+++++.++ .. +.+..++++.+++ .+. .+.||+|++ |..+........+..|++.+++.|.
T Consensus 379 ATGf~~~~~~~--~~--~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~ 453 (540)
T 3gwf_A 379 ATGFDAVDGNY--RR--IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIG 453 (540)
T ss_dssp CCCBSCSSHHH--HT--SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHH
T ss_pred CCccCccccCc--Cc--ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999987431 22 2222222333332 233 478999999 8776544566778888888888774
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=245.61 Aligned_cols=308 Identities=19% Similarity=0.209 Sum_probs=195.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
..+||+|||||++|+++|.+|++.|++|+|||+++.+||+|. ..++|........+.+......-...+........+.
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~-~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~ 86 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY-WNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ 86 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH-HCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc-cCCCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence 458999999999999999999999999999999999999984 5677755443333333322111000011111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEe----cCCEEEEEccCCceEEEEeCeEEEccC--CCC--CC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKV--TYVKG-YGKFI----SPSEVSVDTIEGGNTVVKGKNIIIATG--SDV--KS 190 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~~----d~~~~~v~~~~g~~~~~~~d~lvlAtG--~~p--~~ 190 (507)
..+. .++....++.++ .+..+ .+..+ +...+.|.+.+| .++.||+||+||| +.| +.
T Consensus 87 ~ei~-----------~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~lV~AtG~~s~p~~p~ 153 (545)
T 3uox_A 87 PEML-----------RYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNE--EVVTCRFLISATGPLSASRMPD 153 (545)
T ss_dssp HHHH-----------HHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTT--EEEEEEEEEECCCSCBC---CC
T ss_pred HHHH-----------HHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCC--CEEEeCEEEECcCCCCCCcCCC
Confidence 2222 222333344343 33333 23222 234678888888 7899999999999 676 35
Q ss_pred CCCCc-cCCceEecchhhcc-------ccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCCCC----HHH
Q 010573 191 LPGIT-IDEKRIVSSTGALA-------LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMD----GEI 257 (507)
Q Consensus 191 ~pg~~-~~~~~~~~~~~~~~-------~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~d----~~~ 257 (507)
+||.+ ..+..+++...... ....+|+|+|||+|.+|+|+|..|++.+.+||+++|.+++ ++..+ +..
T Consensus 154 ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~ 233 (545)
T 3uox_A 154 IKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEK 233 (545)
T ss_dssp CTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHH
T ss_pred CCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHH
Confidence 67765 33445666655544 4556899999999999999999999999999999999974 44332 221
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 010573 258 RKQFQ--------------------------------------------------------------------------- 262 (507)
Q Consensus 258 ~~~~~--------------------------------------------------------------------------- 262 (507)
.+.++
T Consensus 234 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (545)
T 3uox_A 234 MDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKI 313 (545)
T ss_dssp HHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11110
Q ss_pred --------------------------------HHHHhcCcEEEc--CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEE
Q 010573 263 --------------------------------RSLEKQKMKFML--KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVV 308 (507)
Q Consensus 263 --------------------------------~~l~~~Gv~i~~--~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~v 308 (507)
+.+.+.+|+++. +..|+++. ++++.. . ++ ++++|.|
T Consensus 314 ~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it--~~gv~~--~-----dG-~~~~D~I 383 (545)
T 3uox_A 314 RQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVT--PEGIKT--A-----DA-AYDLDVI 383 (545)
T ss_dssp HHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEE--TTEEEE--S-----SC-EEECSEE
T ss_pred HHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEc--cCeEEe--C-----CC-eeecCEE
Confidence 111223777775 67888884 445443 2 67 8999999
Q ss_pred EEeecCCCCCCCCCCcccCceecCCCCeecCCC-----------CCCCCCCeEEecCCCC---CCCcHhHHHHHHHHHHH
Q 010573 309 LVSAGRTPFTAGLGLDKIGVETDKMGRIPVNER-----------FATNIPGVYAIGDVIP---GPMLAHKAEEDGVACVE 374 (507)
Q Consensus 309 i~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~-----------~~t~~~~IyA~GD~a~---~~~~~~~A~~~g~~aa~ 374 (507)
|+|||+.+++.++ . ++++..+++..+++. +-.+.||+|.+.--.. .......+..|++.+++
T Consensus 384 V~ATGf~~~~~~~--~--~~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~ 459 (545)
T 3uox_A 384 IYATGFDAVTGSL--D--RIDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLR 459 (545)
T ss_dssp EECCCCBSSSCSC--T--TSEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHH
T ss_pred EECCccccccccC--C--CceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHH
Confidence 9999999977643 2 233333333444322 1247899999843321 23456677888988888
Q ss_pred HHc
Q 010573 375 FLA 377 (507)
Q Consensus 375 ~i~ 377 (507)
.|.
T Consensus 460 ~i~ 462 (545)
T 3uox_A 460 MIS 462 (545)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-26 Score=234.13 Aligned_cols=302 Identities=19% Similarity=0.255 Sum_probs=190.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc---cc---cchhhhhhhhHHHHHHHhhhhhCCcccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV---GC---IPSKALLHSSHMYHEAMHSFASHGVKFS 115 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~---~~---~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 115 (507)
..+||+|||||++|+++|.+|++.|++|+|||+++.+||+|... +| +|+..+...... .. .......
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~--~~---~~~~~~~-- 92 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSP--EL---EQEWNWS-- 92 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCH--HH---HHHCCCS--
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhccccccc--cc---ccCCCCc--
Confidence 45899999999999999999999999999999999999998632 33 444332221100 00 0111111
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEe--cC--CEEEEEccCCceEEEEeCeEEEccC--C
Q 010573 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV--TYVKG-YGKFI--SP--SEVSVDTIEGGNTVVKGKNIIIATG--S 186 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~~--d~--~~~~v~~~~g~~~~~~~d~lvlAtG--~ 186 (507)
....+.. .+..++....++.++ ++..+ .+..+ +. ..+.|.+.+| .++.||+||+||| +
T Consensus 93 ~~~~~~~-----------ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G--~~i~ad~lV~AtG~~s 159 (549)
T 4ap3_A 93 EKYATQP-----------EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG--DEVSARFLVVAAGPLS 159 (549)
T ss_dssp SSSCBHH-----------HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCSEE
T ss_pred cCCCCHH-----------HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC--CEEEeCEEEECcCCCC
Confidence 1111112 223334455556665 45444 33333 22 3678888887 5799999999999 6
Q ss_pred CC--CCCCCCc-cCCceEecchhh-ccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCCCCHHHHHHH
Q 010573 187 DV--KSLPGIT-IDEKRIVSSTGA-LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSMDGEIRKQF 261 (507)
Q Consensus 187 ~p--~~~pg~~-~~~~~~~~~~~~-~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~d~~~~~~~ 261 (507)
.| +.+||.. ..+..+++.... ......+++|+|||+|.+|+|+|..|++.+.+|++++|.+++ +|..++++....
T Consensus 160 ~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~ 239 (549)
T 4ap3_A 160 NANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDAT 239 (549)
T ss_dssp ECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHH
T ss_pred CCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHH
Confidence 66 3567765 334445555433 234456899999999999999999999999999999999875 444332221111
Q ss_pred HHH-----------------------------------------------------------------------------
Q 010573 262 QRS----------------------------------------------------------------------------- 264 (507)
Q Consensus 262 ~~~----------------------------------------------------------------------------- 264 (507)
.+.
T Consensus 240 ~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (549)
T 4ap3_A 240 RAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIR 319 (549)
T ss_dssp HHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 110
Q ss_pred ---------------------------------HHhcCcEEE--cCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEE
Q 010573 265 ---------------------------------LEKQKMKFM--LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309 (507)
Q Consensus 265 ---------------------------------l~~~Gv~i~--~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi 309 (507)
+.+.+|+++ ....|+++. ++++.. . ++ ++++|.||
T Consensus 320 ~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it--~~gv~~--~-----dG-~~~~D~iI 389 (549)
T 4ap3_A 320 AVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMD--ETGIVT--T-----GA-HYDLDMIV 389 (549)
T ss_dssp HHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEE--TTEEEE--S-----SC-EEECSEEE
T ss_pred HHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEe--CCcEEe--C-----CC-ceecCEEE
Confidence 122377776 257788874 445443 2 66 89999999
Q ss_pred EeecCCCCCCCCCCcccCceecCCCCeecCCCC----------C-CCCCCeEEe-cCCCC--CCCcHhHHHHHHHHHHHH
Q 010573 310 VSAGRTPFTAGLGLDKIGVETDKMGRIPVNERF----------A-TNIPGVYAI-GDVIP--GPMLAHKAEEDGVACVEF 375 (507)
Q Consensus 310 ~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~----------~-t~~~~IyA~-GD~a~--~~~~~~~A~~~g~~aa~~ 375 (507)
+|||+++++.++ .. +.+..++++.+++.. . ...||+|.+ |--.. .......+..|++.+++.
T Consensus 390 ~ATGf~~~~~~~--~~--~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~ 465 (549)
T 4ap3_A 390 LATGFDAMTGSL--DK--LEIVGRGGRTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADA 465 (549)
T ss_dssp ECCCEEESSTTG--GG--SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHH
T ss_pred ECCccccccccc--Cc--eeEECCCCcCHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHH
Confidence 999999987542 22 333333345554221 1 468999997 43322 234566777888888876
Q ss_pred Hc
Q 010573 376 LA 377 (507)
Q Consensus 376 i~ 377 (507)
|.
T Consensus 466 i~ 467 (549)
T 4ap3_A 466 IA 467 (549)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=232.98 Aligned_cols=306 Identities=20% Similarity=0.297 Sum_probs=188.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHH--HhhhhhCCcccCcccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA--MHSFASHGVKFSSVEV 119 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~ 119 (507)
..+||+|||||++|+++|..|++.|++|+|||+++.+||+|. ..|.|...+......+... ......... .....
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~-~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~--~~~~~ 91 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY-WNRYPGARCDIESIEYCYSFSEEVLQEWNW--TERYA 91 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH-HCCCTTCBCSSCTTTSSCCSCHHHHHHCCC--CBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc-ccCCCceeecccccccccccChhhhhccCc--ccccC
Confidence 358999999999999999999999999999999999999985 3455543221111110000 000001111 01111
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEe-EEEEe---c-CCEEEEEccCCceEEEEeCeEEEccCC--CCC-
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNK--VTYVKG-YGKFI---S-PSEVSVDTIEGGNTVVKGKNIIIATGS--DVK- 189 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~-~~~~~---d-~~~~~v~~~~g~~~~~~~d~lvlAtG~--~p~- 189 (507)
+...+ ..++....++.+ .++..+ ++..+ + ...+.|.+.+| .++.+|+||+|||. .|.
T Consensus 92 ~~~~i-----------~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~vV~AtG~~s~p~~ 158 (542)
T 1w4x_A 92 SQPEI-----------LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG--DRIRARYLIMASGQLSVPQL 158 (542)
T ss_dssp BHHHH-----------HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCSCCCCCC
T ss_pred CHHHH-----------HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCC--CEEEeCEEEECcCCCCCCCC
Confidence 11222 222223333333 334433 23222 2 24677887777 57899999999994 553
Q ss_pred -CCCCCc-cCCceEecchhh-ccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-CCCC----CHHHHHH-
Q 010573 190 -SLPGIT-IDEKRIVSSTGA-LALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-VPSM----DGEIRKQ- 260 (507)
Q Consensus 190 -~~pg~~-~~~~~~~~~~~~-~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~~~~----d~~~~~~- 260 (507)
.+||.+ ..+..+++.... ......+|+|+|||+|.+|+|++..+++.+.+|+++.|.+.+ ++.. .++..+.
T Consensus 159 p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~ 238 (542)
T 1w4x_A 159 PNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADL 238 (542)
T ss_dssp CCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHH
T ss_pred CCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHH
Confidence 456654 334445555433 223445899999999999999999999999999999998765 2321 1111100
Q ss_pred ----------------------------------------------------------------------HHHH------
Q 010573 261 ----------------------------------------------------------------------FQRS------ 264 (507)
Q Consensus 261 ----------------------------------------------------------------------~~~~------ 264 (507)
+++.
T Consensus 239 ~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (542)
T 1w4x_A 239 KKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVR 318 (542)
T ss_dssp HTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCS
T ss_pred HhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcC
Confidence 0111
Q ss_pred -----------------------------HHhcCcEEE--cCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 265 -----------------------------LEKQKMKFM--LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 265 -----------------------------l~~~Gv~i~--~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
+.+.+|+++ .+..|+++. ++++. +. + +++++|.||+|||
T Consensus 319 ~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~--~~gv~--~~-----d-~~~~~D~ii~atG 388 (542)
T 1w4x_A 319 DPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETIT--PRGVR--TS-----E-REYELDSLVLATG 388 (542)
T ss_dssp SHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEEC--SSEEE--ES-----S-CEEECSEEEECCC
T ss_pred CHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEc--CCeEE--eC-----C-eEEecCEEEEcCC
Confidence 111346665 356777773 44543 32 5 7899999999999
Q ss_pred CCCCCCCCCCcccCceecCCCCeecCC--------C--CC-CCCCCeEEe-cCCCC--CCCcHhHHHHHHHHHHHHHc
Q 010573 314 RTPFTAGLGLDKIGVETDKMGRIPVNE--------R--FA-TNIPGVYAI-GDVIP--GPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 314 ~~p~~~~l~~~~~gl~~~~~G~i~Vd~--------~--~~-t~~~~IyA~-GD~a~--~~~~~~~A~~~g~~aa~~i~ 377 (507)
+++++.. +.. +.+..++++.+++ + +. ...||+|++ |+.+. .+.....|..|++.++++|.
T Consensus 389 ~~~~~~~--~~~--~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~ 462 (542)
T 1w4x_A 389 FDALTGA--LFK--IDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA 462 (542)
T ss_dssp CCCTTHH--HHT--SEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccC--cCc--eeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 9998664 222 3322222344432 2 22 468999998 99863 45566889999999999986
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=184.19 Aligned_cols=152 Identities=22% Similarity=0.260 Sum_probs=132.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC---------CC-----CHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---------SM-----DGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+++|||+|++|+++|..|.+.|.+|+++++.+.+++ .+ ++++.+.+.+.+++.|++++++ +++++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 689999999999999999999999999999876552 23 4788889999999999999999 99999
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC-
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM- 360 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~- 360 (507)
+.+++++.+++. ++ ++++|.||+|+|..|+. ++..|++++ +|.|.||+++||+.|+|||+|||+..+.
T Consensus 82 ~~~~~~~~v~~~-----~g-~i~ad~vI~A~G~~~~~----~~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~~~~ 150 (180)
T 2ywl_A 82 RDMGGVFEVETE-----EG-VEKAERLLLCTHKDPTL----PSLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGKVPG 150 (180)
T ss_dssp EECSSSEEEECS-----SC-EEEEEEEEECCTTCCHH----HHHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTCCSC
T ss_pred EEcCCEEEEEEC-----CC-EEEECEEEECCCCCCCc----cccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCcchh
Confidence 887777666653 34 79999999999999853 356678888 7999999999999999999999998876
Q ss_pred cHhHHHHHHHHHHHHHcCC
Q 010573 361 LAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~ 379 (507)
++..|..||+.||.||.+.
T Consensus 151 ~~~~A~~~g~~aa~~i~~~ 169 (180)
T 2ywl_A 151 HAIISAGDGAYVAVHLVSD 169 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHH
Confidence 8999999999999999753
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-20 Score=189.14 Aligned_cols=216 Identities=19% Similarity=0.270 Sum_probs=132.9
Q ss_pred EEEEEcc---CCceEEEEeCeEEEccCCCCCCCCCCccCCceEecchhhcc------ccCCCCeEEEEcCcHHHHHHHHH
Q 010573 162 EVSVDTI---EGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALA------LNEVPKKLVVIGAGYIGLEMGSV 232 (507)
Q Consensus 162 ~~~v~~~---~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~~~~~~~~------~~~~~~~vvVvG~G~~g~e~A~~ 232 (507)
.+.|.+. .|+..++.++.||+|||..|..++.....+..++++..... -...+|+|+|||+|.+|+|++..
T Consensus 185 ~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~ 264 (501)
T 4b63_A 185 FFTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHD 264 (501)
T ss_dssp EEEEEEEETTTCCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHH
T ss_pred eEEEEEecCCCceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHH
Confidence 3566553 35567899999999999877544334444444444443322 12458999999999999999999
Q ss_pred HHhc--CCeeEEEcccCccCCC---------CCHH-----------HHH--------------------HHHHH-----H
Q 010573 233 WARL--GSEVTVVEFAADIVPS---------MDGE-----------IRK--------------------QFQRS-----L 265 (507)
Q Consensus 233 l~~~--g~~Vtlv~~~~~~~~~---------~d~~-----------~~~--------------------~~~~~-----l 265 (507)
|++. +.+|+++.|++.+.+. ++++ ... .+.+. +
T Consensus 265 L~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~ 344 (501)
T 4b63_A 265 LQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRV 344 (501)
T ss_dssp HHHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcc
Confidence 9865 6899999998765431 1111 111 11111 1
Q ss_pred H-----hcCcEEEcCceEEEEEEcC--CeEEEEEee-------cCCCceEEEEcCEEEEeecCCCCCCCCCCcc-cCcee
Q 010573 266 E-----KQKMKFMLKTKVVGVDLSG--DGVKLTLEP-------AAGGEKTILEADVVLVSAGRTPFTAGLGLDK-IGVET 330 (507)
Q Consensus 266 ~-----~~Gv~i~~~~~v~~i~~~~--~~v~v~~~~-------~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~-~gl~~ 330 (507)
. .....+..+..+..++... +.+.+.... ...++++++++|.||+|||++|+.....+.. ..+..
T Consensus 345 ~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~ 424 (501)
T 4b63_A 345 KNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRP 424 (501)
T ss_dssp HCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSS
T ss_pred CCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCc
Confidence 0 0123566666676665432 234443321 1124677899999999999999864210111 23556
Q ss_pred cCCCCeecCCCCC--C------CCCCeEEecCCC-----CCCCcHhHHHHHHHHHHHHHcC
Q 010573 331 DKMGRIPVNERFA--T------NIPGVYAIGDVI-----PGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 331 ~~~G~i~Vd~~~~--t------~~~~IyA~GD~a-----~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+.+|.+.|+..++ + ..++||+.|-+- +.+.+...|.+.|+++ +.|+|
T Consensus 425 d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~-~~l~g 484 (501)
T 4b63_A 425 TGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMV-QSIFG 484 (501)
T ss_dssp TTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHH-HHHHH
T ss_pred CcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHH-HHHhc
Confidence 7778888887765 2 236799999543 3466778898888765 34444
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-21 Score=199.58 Aligned_cols=305 Identities=17% Similarity=0.171 Sum_probs=170.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee----------ccccccchhhhhhh----------------hH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC----------LNVGCIPSKALLHS----------------SH 98 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~----------~~~~~~p~~~~~~~----------------~~ 98 (507)
||+|||||+||++||..|++.|.+|+||||. ..+|.. .+.++.|.+.+... ..
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 7999999999999999999999999999997 555542 22223332211110 00
Q ss_pred HHHHHHhhhhhCCcccCcc-----ccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEE-EEccC
Q 010573 99 MYHEAMHSFASHGVKFSSV-----EVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVS-VDTIE 169 (507)
Q Consensus 99 ~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~-v~~~~ 169 (507)
.......++...|+++... ...+.......+.....+...+.+.+++.+++++.+. + .+ +...+. +...+
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~ 158 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEK 158 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETT
T ss_pred HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEe
Confidence 0112334455566654320 0000000000000112333444455567799998875 5 44 334331 22222
Q ss_pred CceEEEEeCeEEEccCCCCCCCCCCc----cCCceEecchh----hccccCC--CCeEEEEcCcHHHHHHHHHHHhcCCe
Q 010573 170 GGNTVVKGKNIIIATGSDVKSLPGIT----IDEKRIVSSTG----ALALNEV--PKKLVVIGAGYIGLEMGSVWARLGSE 239 (507)
Q Consensus 170 g~~~~~~~d~lvlAtG~~p~~~pg~~----~~~~~~~~~~~----~~~~~~~--~~~vvVvG~G~~g~e~A~~l~~~g~~ 239 (507)
. ...+.+|.||+|||+.+..++... ..+..+..... ...+... ..+++++|+| +++++..+...|..
T Consensus 159 ~-~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~ 235 (472)
T 2e5v_A 159 R-GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQ 235 (472)
T ss_dssp T-EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCE
T ss_pred C-CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceE
Confidence 1 134779999999999874332111 01111100000 1111111 1234556766 88888888888987
Q ss_pred eEEEcccCccCCCCCHHH--------HHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEE-cCEEEE
Q 010573 240 VTVVEFAADIVPSMDGEI--------RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE-ADVVLV 310 (507)
Q Consensus 240 Vtlv~~~~~~~~~~d~~~--------~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~-~D~vi~ 310 (507)
+ +..+.+++++.++++. ...+.+.+++.|. ++++... + +. + ...++ .+.++.
T Consensus 236 ~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~---~~-----~-------~~~~~~~~~~~~ 296 (472)
T 2e5v_A 236 I-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I---ED-----F-------ERKFPVVAKYLA 296 (472)
T ss_dssp E-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C---TT-----H-------HHHCHHHHHHHH
T ss_pred E-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h---HH-----H-------HHHhHHHHHHHH
Confidence 7 7888888886666543 5566666666553 2221110 0 00 0 01232 366777
Q ss_pred eecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCC-CC----CcHhHHHHHHHHHHHHH
Q 010573 311 SAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP-GP----MLAHKAEEDGVACVEFL 376 (507)
Q Consensus 311 a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~-~~----~~~~~A~~~g~~aa~~i 376 (507)
+.|..|+ +.+. ..+......|+|+||+++||++|||||+|||++ +. .++.++..+|.+.+..+
T Consensus 297 ~~G~dp~-~~i~--v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a 364 (472)
T 2e5v_A 297 RHGHNYK-VKIP--IFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINL 364 (472)
T ss_dssp HTTCCTT-SCEE--CEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHG
T ss_pred HhCcCcc-cceE--eehhhceeCCCeEECCCCccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHH
Confidence 8899999 6532 222233346899999999999999999999986 33 46677777755544444
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-19 Score=178.51 Aligned_cols=201 Identities=18% Similarity=0.302 Sum_probs=116.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC--------cee--ccccccchhhhhhhhHH---------HHH
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG--------GTC--LNVGCIPSKALLHSSHM---------YHE 102 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G--------G~~--~~~~~~p~~~~~~~~~~---------~~~ 102 (507)
.++||+|||||++|++||..|++.|.+|+|+|+++.+| |.| .+.+|.|.+.+.....+ ...
T Consensus 3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (401)
T 2gqf_A 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD 82 (401)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence 35899999999999999999999999999999988774 455 34445443322111111 112
Q ss_pred HHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--c----CCEEEEEccCCceEEE
Q 010573 103 AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--S----PSEVSVDTIEGGNTVV 175 (507)
Q Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d----~~~~~v~~~~g~~~~~ 175 (507)
..+++...|+.+... ++..+++.. ....+...+.+.+++.+++++.+. +..+ + ...+.|.+.++ ++
T Consensus 83 ~~~~~~~~Gi~~~~~--~~g~~~p~~--~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g---~i 155 (401)
T 2gqf_A 83 FISLVAEQGITYHEK--ELGQLFCDE--GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST---QW 155 (401)
T ss_dssp HHHHHHHTTCCEEEC--STTEEEETT--CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE---EE
T ss_pred HHHHHHhCCCceEEC--cCCEEccCC--CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC---EE
Confidence 334445556543211 000000000 112233344556667799998874 4333 3 34566766543 69
Q ss_pred EeCeEEEccCCCCCCCCCCcc-----------------C-CceE-ecchh-h---ccccCCCCeEEEEc-----------
Q 010573 176 KGKNIIIATGSDVKSLPGITI-----------------D-EKRI-VSSTG-A---LALNEVPKKLVVIG----------- 221 (507)
Q Consensus 176 ~~d~lvlAtG~~p~~~pg~~~-----------------~-~~~~-~~~~~-~---~~~~~~~~~vvVvG----------- 221 (507)
.+|+||+|||+.+.+..+... + ...+ ++..+ + +.....+.++.|+|
T Consensus 156 ~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~~~~~i~G~~~~~g~~l~t 235 (401)
T 2gqf_A 156 QCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLPVTITALCGKSFYNQLLFT 235 (401)
T ss_dssp EESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEEEEEEETTSCEEEEEEEEC
T ss_pred ECCEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeeeeEEEEcCCceEEeCEEEE
Confidence 999999999988732111000 0 0111 12222 2 22222355666668
Q ss_pred ----CcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCH
Q 010573 222 ----AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDG 255 (507)
Q Consensus 222 ----~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~ 255 (507)
+|+++++++..+.+ |.++++ .++|.++.
T Consensus 236 ~~g~sG~~~l~~s~~~~~-~~~~~i-----~~~p~~~~ 267 (401)
T 2gqf_A 236 HRGISGPAVLQISNYWQP-TESVEI-----DLLPNHNV 267 (401)
T ss_dssp SSEEESHHHHHHTTTCCT-TCCEEE-----ESCSSSCH
T ss_pred CCCccHHHHHHHHHHHhc-CCEEEE-----ECCCCCCH
Confidence 89999999998876 777775 35666663
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-17 Score=167.33 Aligned_cols=98 Identities=20% Similarity=0.201 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec--------CCCCCCCCCCcc
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG--------RTPFTAGLGLDK 325 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G--------~~p~~~~l~~~~ 325 (507)
+..+...+.+.+++.| +++++++|++|+.+++++.+++. +++++.+|.||+|+| +.|+.+....+.
T Consensus 203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~-----~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~ 276 (431)
T 3k7m_X 203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVK-----DGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSV 276 (431)
T ss_dssp TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEET-----TSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHH
T ss_pred CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEEC-----CCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHH
Confidence 4445566666677778 99999999999888888887764 455799999999999 888876432222
Q ss_pred cCceecCCCCeecCCCCCCCCCCeEEecCCCCC
Q 010573 326 IGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (507)
Q Consensus 326 ~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~ 358 (507)
.+.... ...++|+..++|+.+++|+.||+...
T Consensus 277 ~~~~~~-~~~~kv~~~~~~~~~~i~~~~d~~~~ 308 (431)
T 3k7m_X 277 IEEGHG-GQGLKILIHVRGAEAGIECVGDGIFP 308 (431)
T ss_dssp HHHCCC-CCEEEEEEEEESCCTTEEEEBSSSSS
T ss_pred HHhCCC-cceEEEEEEECCCCcCceEcCCCCEE
Confidence 222222 23599999999999999999998643
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=154.22 Aligned_cols=167 Identities=19% Similarity=0.294 Sum_probs=100.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC-CCCceeccccccchhhhhhhhHHHHHHHhh-------hhhCCcc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMHS-------FASHGVK 113 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~g~~ 113 (507)
..|||+|||||+||++||..|++.|.+|+|||++. .+| ..+|.|+.......+....+... ....++.
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG----~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~ 102 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG----QMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQ 102 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT----CCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc----cccccccccchhhHHHHHHHHHhccHHHHHhhhcccc
Confidence 46999999999999999999999999999999964 344 34566654332222222221110 0001111
Q ss_pred cCcc-------------ccChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEe--cCCEE-EEEccCCceEEEE
Q 010573 114 FSSV-------------EVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEV-SVDTIEGGNTVVK 176 (507)
Q Consensus 114 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--d~~~~-~v~~~~g~~~~~~ 176 (507)
+... ..+. ..+...+.+.+++ .+++++.+.+..+ +.+.+ .|.+.+| ..+.
T Consensus 103 f~~l~~~kgpav~~~r~~~Dr-----------~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG--~~I~ 169 (651)
T 3ces_A 103 FRILNASKGPAVRATRAQADR-----------VLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMG--LKFR 169 (651)
T ss_dssp EEEESTTSCGGGCEEEEEECH-----------HHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTS--EEEE
T ss_pred hhhhhcccCcccccchhhCCH-----------HHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCC--CEEE
Confidence 1100 0111 1233444556666 6999987777666 34443 5666777 7899
Q ss_pred eCeEEEccCCCCC--CCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEc
Q 010573 177 GKNIIIATGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE 244 (507)
Q Consensus 177 ~d~lvlAtG~~p~--~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~ 244 (507)
+|.||+|||+.+. .++|... + .+.+ +| |.++++++..|.++|.+|+.+.
T Consensus 170 Ad~VVLATGt~s~~~~i~G~~~-----~----------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 170 AKAVVLTVGTFLDGKIHIGLDN-----Y----------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp EEEEEECCSTTTCCEEECC--------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred CCEEEEcCCCCccCccccCccc-----C----------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 9999999998774 3344321 0 1233 56 7889999999999999998774
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-15 Score=136.10 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=110.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-----------------CCCC-------CHHHHHHHHHHHHhc-C
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-----------------VPSM-------DGEIRKQFQRSLEKQ-K 269 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-----------------~~~~-------d~~~~~~~~~~l~~~-G 269 (507)
.+|+|||+|+.|+++|..|++.|.+|+++++.... ...+ ...+.+.+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 36999999999999999999999999999986211 0001 126667788888886 9
Q ss_pred cEEEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCC-C--------------------CcccC
Q 010573 270 MKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL-G--------------------LDKIG 327 (507)
Q Consensus 270 v~i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l-~--------------------~~~~g 327 (507)
++++ +++++++..+++.+ .+.+. +++++.+|.||+|+|..++.... + +...+
T Consensus 84 v~i~-~~~v~~i~~~~~~v~~v~~~-----~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g 157 (232)
T 2cul_A 84 LHLF-QATATGLLLEGNRVVGVRTW-----EGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLG 157 (232)
T ss_dssp EEEE-ECCEEEEEEETTEEEEEEET-----TSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTT
T ss_pred cEEE-EeEEEEEEEeCCEEEEEEEC-----CCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCC
Confidence 9998 57999998777765 35543 34579999999999995543210 0 11122
Q ss_pred ceecCCC--------C-------eecCC------CC-CCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 328 VETDKMG--------R-------IPVNE------RF-ATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 328 l~~~~~G--------~-------i~Vd~------~~-~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+++.+.. . ..+.. .+ .|++|||||+|||+ .......|+.||+.+|.+|..
T Consensus 158 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 158 FRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REGDYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp CCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCccHHHHHHHHHHHHHHHHh
Confidence 2222110 0 00000 12 27999999999999 766888899999999999964
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=141.52 Aligned_cols=174 Identities=22% Similarity=0.303 Sum_probs=101.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC-CCCceeccccccchhhhhhhhHHHHHHHh-------hhhhCCcc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMH-------SFASHGVK 113 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~g~~ 113 (507)
..|||+|||||+||++||..|++.|.+|+|||++. .+|+ .+|.|+............+.. .....++.
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~----~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~ 101 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ----MSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQ 101 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC----cCccccccccchHHHHHHHHHhhhHHHHHhhhcccc
Confidence 46899999999999999999999999999999964 4553 456664322211122221110 00111111
Q ss_pred cCc------cccChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEe--cCCEE-EEEccCCceEEEEeCeEEEc
Q 010573 114 FSS------VEVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEV-SVDTIEGGNTVVKGKNIIIA 183 (507)
Q Consensus 114 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--d~~~~-~v~~~~g~~~~~~~d~lvlA 183 (507)
+.. ........... ...+...+.+.+++ .+++++.+.+..+ +.+.+ .|.+.+| ..+.+|.||+|
T Consensus 102 f~~l~~~kGpav~~~r~~~D----r~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG--~~i~AdaVVLA 175 (637)
T 2zxi_A 102 FKMLNTRKGKAVQSPRAQAD----KKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLG--VEYKTKAVVVT 175 (637)
T ss_dssp EEEESTTSCGGGCEEEEEEC----HHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTS--CEEECSEEEEC
T ss_pred eeecccccCccccchhhhCC----HHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCC--cEEEeCEEEEc
Confidence 110 00000000000 01233444556666 5999987777654 34443 4667777 67999999999
Q ss_pred cCCCCC--CCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEc
Q 010573 184 TGSDVK--SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVE 244 (507)
Q Consensus 184 tG~~p~--~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~ 244 (507)
||+.+. .++|... +. +.+ + |+.++++++..|.++|.+++.+.
T Consensus 176 TG~~s~~~~~~G~~~-----~~----------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~ 219 (637)
T 2zxi_A 176 TGTFLNGVIYIGDKM-----IP----------GGR---L-GEPRSEGLSDFYRRFDFPLIRFK 219 (637)
T ss_dssp CTTCBTCEEEETTEE-----EE----------CSB---T-TBCCBCTHHHHHHHTTCCCEEEE
T ss_pred cCCCccCceecccee-----cC----------CCC---C-CchhHHHHHHHHHhcCCceEEec
Confidence 998764 2333220 00 112 2 35678899999999998776553
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=132.69 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=33.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCce
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (507)
..+||||||||+||++||+.|++ |.+|+||||....+|.
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~ 45 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGS 45 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence 35899999999999999999999 9999999998766543
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-12 Score=117.93 Aligned_cols=164 Identities=18% Similarity=0.237 Sum_probs=112.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc-CCeeEEEcccCccCCC--------------------------------------CCH
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADIVPS--------------------------------------MDG 255 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~~~~--------------------------------------~d~ 255 (507)
.+|+|||+|++|+.+|..|++. |.+|+++++.+.+... ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 9999999988754210 123
Q ss_pred HHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeE-EEEEeec---------CCCceEEEEcCEEEEeecCCCCCCCCCCc
Q 010573 256 EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGV-KLTLEPA---------AGGEKTILEADVVLVSAGRTPFTAGLGLD 324 (507)
Q Consensus 256 ~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v-~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (507)
++...+.+.+.+ .|+++++++.|+++..+++.+ .+.+... ..++..++++|.||+|+|..++...+..+
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~ 199 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 199 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHH
Confidence 445556666655 699999999999998777655 3444310 11234689999999999988875432111
Q ss_pred cc---C--ceecCCCCeecCC-------CCCCCCCCeEEecCCCC--------CCCcHhHHHHHHHHHHHHHcCC
Q 010573 325 KI---G--VETDKMGRIPVNE-------RFATNIPGVYAIGDVIP--------GPMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 325 ~~---g--l~~~~~G~i~Vd~-------~~~t~~~~IyA~GD~a~--------~~~~~~~A~~~g~~aa~~i~~~ 379 (507)
.. + +.+.....+.+|. ..+|+.|++|++||++. +| .+..+..+|+.+|.++...
T Consensus 200 ~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp-~~~~~~~sG~~~a~~i~~~ 273 (284)
T 1rp0_A 200 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP-TFGAMMISGQKAGQLALKA 273 (284)
T ss_dssp HHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCS-CCHHHHHHHHHHHHHHHHH
T ss_pred HhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcCh-HHHHHHHhHHHHHHHHHHH
Confidence 10 1 1111112243332 34577899999999882 23 3567889999999999743
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-12 Score=134.02 Aligned_cols=36 Identities=36% Similarity=0.478 Sum_probs=33.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~ 78 (507)
.+||||||||+||++||+.|++.| .+|+||||....
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~ 42 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM 42 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence 479999999999999999999999 999999997544
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-10 Score=114.91 Aligned_cols=57 Identities=16% Similarity=0.345 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.++.+.+.+.+++.|++++++++|++++.+++++.+.+. ++ ++.+|.||+|+|..+.
T Consensus 132 ~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~-----~g-~i~ad~VIlAtG~~S~ 188 (417)
T 3v76_A 132 KDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTS-----AG-TVDAASLVVASGGKSI 188 (417)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEET-----TE-EEEESEEEECCCCSSC
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEEC-----Cc-EEEeeEEEECCCCccC
Confidence 456677888888899999999999999888888777753 34 8999999999998863
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=128.02 Aligned_cols=172 Identities=19% Similarity=0.235 Sum_probs=101.5
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC-CCCceeccccccchhhhhhhhHHHHHHHh-------hhhhC
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG-ALGGTCLNVGCIPSKALLHSSHMYHEAMH-------SFASH 110 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~-~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~ 110 (507)
.....|||+|||||+||++||..|++.|.+|+|||+.. .+|+ .+|.|+.......+..+.+.. .....
T Consensus 17 ~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~----~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~ 92 (641)
T 3cp8_A 17 RGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR----MSCNPAIGGVAKGQITREIDALGGEMGKAIDAT 92 (641)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC----CSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHH
T ss_pred cccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC----CccccchhhhhHHHHHHHHHhcccHHHHHHHhc
Confidence 34456999999999999999999999999999999964 4554 345554332222222222111 00111
Q ss_pred CcccCc------c-------ccChHHHHHHHHHHHHHHHHHHHHHHHh-CCcEEEEeEEEEe--cCCEEE-EEccCCceE
Q 010573 111 GVKFSS------V-------EVDLPAMMAQKDKAVSNLTRGIEGLFKK-NKVTYVKGYGKFI--SPSEVS-VDTIEGGNT 173 (507)
Q Consensus 111 g~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--d~~~~~-v~~~~g~~~ 173 (507)
++.+.. . ..+.. .+...+.+.+++ .+++++.+.+..+ +.+.+. |.+.+| .
T Consensus 93 gi~f~~l~~~kgpav~~~r~~~Dr~-----------~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G--~ 159 (641)
T 3cp8_A 93 GIQFRMLNRSKGPAMHSPRAQADKT-----------QYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSG--R 159 (641)
T ss_dssp EEEEEEECSSSCTTTCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--C
T ss_pred CCchhhcccccCccccchhhhcCHH-----------HHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCC--c
Confidence 121110 0 01111 223334455666 4899987776653 455555 777777 6
Q ss_pred EEEeCeEEEccCCCCCCCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEE
Q 010573 174 VVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV 243 (507)
Q Consensus 174 ~~~~d~lvlAtG~~p~~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv 243 (507)
.+.+|.||+|||+.+....... ..-+. ..++ + |+.++++++..|.+.|.++..+
T Consensus 160 ~i~Ad~VVLATG~~s~~~i~~G---~~~~~----------~g~~--v-G~~~a~~la~~L~~~G~kv~~l 213 (641)
T 3cp8_A 160 AIQAKAAILACGTFLNGLIHIG---MDHFP----------GGRS--T-AEPPVEGLTESLASLGFSFGRL 213 (641)
T ss_dssp EEEEEEEEECCTTCBTCEEEET---TEEEE----------CSSS--T-TSCCBCSHHHHHHHTTCCEEEE
T ss_pred EEEeCEEEECcCCCCCccceee---eeeec----------cccc--c-CCchhhhhHHHHHhCCceEEee
Confidence 8999999999999865321110 00000 0111 1 3577889999999999988654
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=121.54 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=33.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHC------CCcEEEEecCCCCCc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGG 80 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~------g~~V~lie~~~~~GG 80 (507)
.+||||||||+||++||+.|++. |.+|+||||....++
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s 65 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS 65 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence 58999999999999999999997 999999999654443
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=107.00 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++++++|++++.++++ +.+.+. +|+..++.+|.||+|+|...
T Consensus 150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~---~g~~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFG---GAEPMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEEC---TTSCEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEEC---CCceeEEEeCEEEECCCcch
Confidence 467778888899999999999999999887665 666653 23336899999999999764
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.06 E-value=7e-10 Score=113.67 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=81.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC-------ceeccccccchhh-------------------hh
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG-------GTCLNVGCIPSKA-------------------LL 94 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G-------G~~~~~~~~p~~~-------------------~~ 94 (507)
...+||+|||||++|++||+.|++.|++|+|||+.+.++ +.|....|.|... +.
T Consensus 105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~ 184 (549)
T 3nlc_A 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVK 184 (549)
T ss_dssp TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEec
Confidence 345899999999999999999999999999999976542 1111111111000 00
Q ss_pred hhhHHHHHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCE-EEEEccCC
Q 010573 95 HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSE-VSVDTIEG 170 (507)
Q Consensus 95 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~-~~v~~~~g 170 (507)
............+..+|............+.. .....+...+.+.+++.+++++.+. +..+ +... ..|.+.+|
T Consensus 185 ~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~---~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G 261 (549)
T 3nlc_A 185 DPNFYGRKVITEFVEAGAPEEILYVSKPHIGT---FKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNG 261 (549)
T ss_dssp CTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCH---HHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTS
T ss_pred cccccHHHHHHHHHHcCCCceEeecccccccc---chHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCC
Confidence 00111122333344455432110000000000 0112334445566667899998874 4443 3333 44777777
Q ss_pred ceEEEEeCeEEEccCCCC
Q 010573 171 GNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 171 ~~~~~~~d~lvlAtG~~p 188 (507)
.++.+|.||+|+|..+
T Consensus 262 --~~i~Ad~VVlA~G~~s 277 (549)
T 3nlc_A 262 --EEIKSRHVVLAVGHSA 277 (549)
T ss_dssp --CEEECSCEEECCCTTC
T ss_pred --CEEECCEEEECCCCCh
Confidence 6799999999999876
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=96.12 Aligned_cols=109 Identities=28% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+||++|||||++|+.+|..|++.|.+|+|||+.+..-..+...... .+++ . ....
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~---------------------~~~~-~--~~~~- 55 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNY---------------------PGLL-D--EPSG- 55 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCS---------------------TTCT-T--CCCH-
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhcc---------------------CCCc-C--CCCH-
Confidence 3799999999999999999999999999999965221100000000 0000 0 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEe--cCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+++++.+++..+ +.+.+.+.+++| ++.+|.||+|+|..|.
T Consensus 56 ----------~~~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g---~i~ad~vI~A~G~~~~ 111 (180)
T 2ywl_A 56 ----------EELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG---VEKAERLLLCTHKDPT 111 (180)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC---EEEEEEEEECCTTCCH
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC---EEEECEEEECCCCCCC
Confidence 12334445667778999988754444 334566777665 6899999999999983
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-10 Score=101.33 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=73.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhh-hCCcccCccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFA-SHGVKFSSVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 121 (507)
.|||+|||||++|+++|..|++.|.+|+|||+.....|.+ |.|........+.... +. ..+ .+
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~----~~~~~~~~~~~~~~~~----~~d~~g-------~~- 66 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP----FLPPKPPFPPGSLLER----AYDPKD-------ER- 66 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC----SSCCCSCCCTTCHHHH----HCCTTC-------CC-
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcc----cCccccccchhhHHhh----hccCCC-------CC-
Confidence 5899999999999999999999999999999974333321 2222100001111111 11 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEe--cCCEE-EEEccCCceEEEEeCeEEEccCCCCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFI--SPSEV-SVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~--d~~~~-~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
...+...+.+.+++. +++++...+..+ +.+.+ .+.+.+| .++.+|.||+|+|....
T Consensus 67 ----------~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g--~~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 67 ----------VWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSFLG 126 (232)
T ss_dssp ----------HHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTCSS
T ss_pred ----------HHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCC--CEEECCEEEECCCCChh
Confidence 112334455666665 999886665544 33343 4666677 57999999999998653
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=100.46 Aligned_cols=132 Identities=22% Similarity=0.266 Sum_probs=78.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcc-c-
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSV-E- 118 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~- 118 (507)
.++||+|||||++|+++|..|++. |.+|+|||+.+.+||.+...+++......... ....+...|+.+... .
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~-----~~~~l~~~G~~~~~~~~~ 112 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKP-----AHLFLDEIGVAYDEQDTY 112 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETT-----THHHHHHHTCCCEECSSE
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcH-----HHHHHHHcCCCcccCCCE
Confidence 358999999999999999999997 99999999988888765544443322111111 112233334443211 0
Q ss_pred ---cChHHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEeE-EEEe--cCCEE-EEEcc---------C---CceEEEEeC
Q 010573 119 ---VDLPAMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKGY-GKFI--SPSEV-SVDTI---------E---GGNTVVKGK 178 (507)
Q Consensus 119 ---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~--d~~~~-~v~~~---------~---g~~~~~~~d 178 (507)
.+.. .+...+.+.+ +..+++++.+. +..+ +...+ .+.+. + ++...+.+|
T Consensus 113 ~~~~~~~-----------~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad 181 (284)
T 1rp0_A 113 VVVKHAA-----------LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAK 181 (284)
T ss_dssp EEESCHH-----------HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEE
T ss_pred EEecCHH-----------HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECC
Confidence 0111 1222223333 34699998874 4444 33332 22221 1 234689999
Q ss_pred eEEEccCCCCC
Q 010573 179 NIIIATGSDVK 189 (507)
Q Consensus 179 ~lvlAtG~~p~ 189 (507)
.||+|+|..+.
T Consensus 182 ~VV~AtG~~s~ 192 (284)
T 1rp0_A 182 IVVSSCGHDGP 192 (284)
T ss_dssp EEEECCCSSST
T ss_pred EEEECCCCchH
Confidence 99999998663
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=113.75 Aligned_cols=42 Identities=43% Similarity=0.617 Sum_probs=38.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
.+||||||||+||++||+.|++.|++|+||||.+..||....
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~ 167 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKL 167 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhh
Confidence 589999999999999999999999999999998888876443
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.7e-09 Score=103.47 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.+...+.+..++.|++++.+++++.+..+++.+...... .+++..++.+|.||.|.|....
T Consensus 103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~-~~~~~~~~~a~~vIgAdG~~S~ 163 (397)
T 3oz2_A 103 KFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIR-HNNEIVDVRAKMVIAADGFESE 163 (397)
T ss_dssp HHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEE-ETTEEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeec-ccccceEEEEeEEEeCCccccH
Confidence 345566677778899999999999998877776533321 2345567999999999997653
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.3e-09 Score=103.98 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCc---eEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKT---KVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~---~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|+++++++ +|+++..+++++. |++. +++++.+|.||+|+|...
T Consensus 161 ~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~-----~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 161 RNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTA-----DGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEET-----TTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEEC-----CCCEEECCEEEECCCCCh
Confidence 4677788888889999999999 9999988777777 7664 456899999999999754
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-09 Score=112.66 Aligned_cols=42 Identities=26% Similarity=0.565 Sum_probs=37.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
..+||||||||+||++||+.|++.|.+|+||||.+..||...
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~ 161 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 161 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence 458999999999999999999999999999999888876543
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-08 Score=107.67 Aligned_cols=57 Identities=12% Similarity=0.192 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++++++|++++.+++++.+++. ++.++.+|.||+|+|...
T Consensus 417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~-----~G~~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFA-----GDQQATHSVVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEET-----TSCEEEESEEEECCGGGG
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEEC-----CCCEEECCEEEECCCcch
Confidence 567777888888999999999999999988888776653 345799999999999764
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=5.7e-09 Score=105.34 Aligned_cols=141 Identities=24% Similarity=0.346 Sum_probs=80.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc---c------cchhhhh---hhhH---------HHH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG---C------IPSKALL---HSSH---------MYH 101 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~---~------~p~~~~~---~~~~---------~~~ 101 (507)
++||+|||||++|+++|+.|++.|.+|+|+|+.+.+|+.....+ | .+...+. .... ...
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE 105 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence 48999999999999999999999999999999887764321111 1 0100000 0000 011
Q ss_pred HHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCE-EEEEccCCceEEEEe
Q 010573 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSE-VSVDTIEGGNTVVKG 177 (507)
Q Consensus 102 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~-~~v~~~~g~~~~~~~ 177 (507)
....++...|+.+..... ..+++.. .....+...+.+.+++.+++++.+. +..+ +... +.|.+.+| ..+.+
T Consensus 106 ~~~~~~~~~G~~~~~~~~--g~~~p~~-~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G--~~i~A 180 (447)
T 2i0z_A 106 DIITFFENLGVKLKEEDH--GRMFPVS-NKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG--EVLET 180 (447)
T ss_dssp HHHHHHHHTTCCEEECGG--GEEEETT-CCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTC--CEEEC
T ss_pred HHHHHHHhcCCceEEeeC--CEEECCC-CCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCC--CEEEC
Confidence 223334444543321000 0000000 0012233444555667899988763 4433 3444 66777777 46999
Q ss_pred CeEEEccCCCC
Q 010573 178 KNIIIATGSDV 188 (507)
Q Consensus 178 d~lvlAtG~~p 188 (507)
|.||+|||..+
T Consensus 181 d~VVlAtGg~s 191 (447)
T 2i0z_A 181 NHVVIAVGGKS 191 (447)
T ss_dssp SCEEECCCCSS
T ss_pred CEEEECCCCCc
Confidence 99999999876
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-08 Score=100.92 Aligned_cols=60 Identities=18% Similarity=0.286 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+.+.+.+.+++.|++++.+++|++++.++++..+.+.. .+|+..++.+|.||.|+|..+
T Consensus 107 ~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~-~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 107 NFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIED-INGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEE-TTSCEEEEEEEEEEECCGGGC
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEc-CCCCEEEEEcCEEEECCCCch
Confidence 455667777778899999999999998887776666543 233334799999999999876
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=103.14 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+.+.+.+.+++.|++|+++++|++|+.++++++ |++. +++++.+|.||.+++....
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~-----~g~~~~ad~VV~~a~~~~~ 279 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLE-----DGRRFLTQAVASNADVVHT 279 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-----TSCEEECSCEEECCC----
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEec-----CCcEEEcCEEEECCCHHHH
Confidence 35677788889999999999999999998888876 6665 6789999999998875543
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-08 Score=97.27 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++.+++|++++.+++++. +++. ++ ++.+|.||+|+|...
T Consensus 149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~-----~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTN-----KG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEET-----TE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEEC-----Cc-EEECCEEEECcchhH
Confidence 45667788888899999999999999988777766 6543 34 799999999999764
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-09 Score=108.42 Aligned_cols=125 Identities=21% Similarity=0.219 Sum_probs=76.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc-----c-
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK-----F- 114 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~-----~- 114 (507)
...+||+|||||++|+++|..|++.|++|+|||+.+.+|+. ...++.|.. ...+...|+. +
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~-~~~~~~~~~------------~~~l~~~g~~~~~~~~~ 156 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH-NVLHLWPFT------------IHDLRALGAKKFYGRFC 156 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC-CEEECCHHH------------HHHHHTTTHHHHCTTTT
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC-CcccCChhH------------HHHHHHcCCcccccccc
Confidence 45689999999999999999999999999999998777643 222222210 0111112210 0
Q ss_pred -Cc-cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC-----CEEEEEc--c-CCceEEEEeCeEEEc
Q 010573 115 -SS-VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP-----SEVSVDT--I-EGGNTVVKGKNIIIA 183 (507)
Q Consensus 115 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~-----~~~~v~~--~-~g~~~~~~~d~lvlA 183 (507)
.. ..++. ..+...+.+.+++.+++++.+ .+..+.. +.+.+.+ . +|+..++.+|+||+|
T Consensus 157 ~~~~~~~~~-----------~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A 225 (497)
T 2bry_A 157 TGTLDHISI-----------RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISA 225 (497)
T ss_dssp CTTCCEEEH-----------HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEEC
T ss_pred ccccccCCH-----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEEC
Confidence 00 00111 223334455566689999887 4544432 3345554 3 442246899999999
Q ss_pred cCCCCC
Q 010573 184 TGSDVK 189 (507)
Q Consensus 184 tG~~p~ 189 (507)
+|..+.
T Consensus 226 ~G~~S~ 231 (497)
T 2bry_A 226 AGGKFV 231 (497)
T ss_dssp CCTTCC
T ss_pred CCCCcc
Confidence 998764
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.9e-09 Score=107.03 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=77.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccch-hhhhhhhHHHHHHHhh--hhhCCcc---
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPS-KALLHSSHMYHEAMHS--FASHGVK--- 113 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~-~~~~~~~~~~~~~~~~--~~~~g~~--- 113 (507)
++..+||+|||||+||+++|..|++.|++|+|||+.+..+... -.+..|. ...+........+... ....+..
T Consensus 20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~-G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 98 (591)
T 3i3l_A 20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRV-GESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLW 98 (591)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCC-CCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEEC
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCce-eeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEe
Confidence 3456899999999999999999999999999999975433211 1111221 1111111111111110 0000000
Q ss_pred ----------cCc-----------cccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec---CCEEEEEcc
Q 010573 114 ----------FSS-----------VEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS---PSEVSVDTI 168 (507)
Q Consensus 114 ----------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d---~~~~~v~~~ 168 (507)
+.. ..++. ..+...+.+..++.|++++.+ .+..+. ...+.|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r-----------~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~ 167 (591)
T 3i3l_A 99 GQDQAPWTFSFAAPKVAPWVFDHAVQVKR-----------EEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVR 167 (591)
T ss_dssp SSSCCCEEEECCCC--CTTCCSCEEECCH-----------HHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEE
T ss_pred cCCCccceeecccccccccccCeeEEEcH-----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEe
Confidence 000 01111 123334455566789999877 455443 445666665
Q ss_pred -CCceEEEEeCeEEEccCCCC
Q 010573 169 -EGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 169 -~g~~~~~~~d~lvlAtG~~p 188 (507)
+|+..++.+|.||.|+|...
T Consensus 168 ~~G~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 168 RGGESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp ETTEEEEEEESEEEECCGGGC
T ss_pred cCCceEEEEcCEEEECCCCcc
Confidence 55556899999999999865
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-08 Score=95.92 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=52.6
Q ss_pred CeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 238 SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 238 ~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
....++......+. +..+...+.+.+++.|++++.+++|++++.+++++.+++. + .++.+|.||+|+|....
T Consensus 135 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-----~-g~~~a~~vV~A~G~~~~ 206 (389)
T 2gf3_A 135 NYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETA-----N-GSYTADKLIVSMGAWNS 206 (389)
T ss_dssp TEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEET-----T-EEEEEEEEEECCGGGHH
T ss_pred CceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeC-----C-CEEEeCEEEEecCccHH
Confidence 34455544433221 3567778888899999999999999999887777766542 3 37999999999997643
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-08 Score=103.69 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceE-EEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKT-ILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~-~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++++++|++++.+++++.+++. ++. ++.+|.||+|+|...
T Consensus 412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~-----~G~~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFG-----QSQAAKHHATVILATGHRL 469 (689)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC------CCCCEEESEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeC-----CCcEEEECCEEEECCCcch
Confidence 567777888888999999999999999988888777654 334 699999999999764
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.4e-08 Score=96.65 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.+...+.+.+++.|++++.+++|++++.+++++.+... + .++.+|.||+|+|..
T Consensus 154 ~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~-----~-g~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 154 GTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTD-----R-GTYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEES-----S-CEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEEC-----C-CEEEcCEEEEcCCcC
Confidence 45666777888899999999999999887777766542 2 379999999999976
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.4e-09 Score=99.88 Aligned_cols=50 Identities=34% Similarity=0.435 Sum_probs=42.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKA 92 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~ 92 (507)
.+||+|||||++|+++|+.|++. |++|+|||+...+||.+...++.+...
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~ 130 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAM 130 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCE
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhh
Confidence 58999999999999999999997 999999999888887776666655443
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=101.03 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=75.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccch-hhhhhhhHHHHHHHhhhhhCCcccCcc---
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPS-KALLHSSHMYHEAMHSFASHGVKFSSV--- 117 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~g~~~~~~--- 117 (507)
..+||+|||||++|+++|..|++.|++|+|||+.+..++........|. ...+........ +...+......
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~----~~~~~~~~~~~~~~ 85 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDD----VLQGSHTPPTYETW 85 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHH----HHTTCBCCSCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHH----HHhhCCCccceEEE
Confidence 3589999999999999999999999999999997766432111111110 000000000111 11111100000
Q ss_pred -------ccChH---HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCC
Q 010573 118 -------EVDLP---AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGS 186 (507)
Q Consensus 118 -------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~ 186 (507)
..+.. ...-. ...+...+.+.+.+.+++++.+. +..++.+. .+.+.+| .++.+|.||.|+|.
T Consensus 86 ~~g~~~~~~~~~~~~~~~~~----r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g--~~~~ad~vV~AdG~ 158 (379)
T 3alj_A 86 MHNKSVSKETFNGLPWRIMT----RSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTG--EVLEADLIVGADGV 158 (379)
T ss_dssp ETTEEEEEECGGGCCEEEEE----HHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTS--CEEECSEEEECCCT
T ss_pred eCCceeeeccCCCCceEEEC----HHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCC--CEEEcCEEEECCCc
Confidence 00000 00000 12233344455566789998774 54443334 6777777 57999999999998
Q ss_pred CCC
Q 010573 187 DVK 189 (507)
Q Consensus 187 ~p~ 189 (507)
.+.
T Consensus 159 ~s~ 161 (379)
T 3alj_A 159 GSK 161 (379)
T ss_dssp TCH
T ss_pred cHH
Confidence 763
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-08 Score=96.27 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+..+.+.+.+.+++.|++++.+++|++++.+++++.+++. ++ ++.+|.||+|+|....
T Consensus 163 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~-----~g-~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 163 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTP-----SG-DVWANHVVVASGVWSG 220 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEET-----TE-EEEEEEEEECCGGGTH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcC-----Cc-eEEcCEEEECCChhHH
Confidence 3567788888888999999999999999877777766542 33 7999999999998643
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-08 Score=102.41 Aligned_cols=44 Identities=36% Similarity=0.489 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
...+||||||+|+||++||+.|++.|++|+||||.+..||....
T Consensus 39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~~ 82 (510)
T 4at0_A 39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATAL 82 (510)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGG
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchh
Confidence 34689999999999999999999999999999999888876543
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-08 Score=98.06 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++.+++|++++.+++++ .+++. ++ ++.+|.||+|+|...
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~-----~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTT-----RG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEET-----TC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeC-----Cc-eEECCEEEECCchhH
Confidence 3677778888889999999999999998776654 35442 23 699999999999765
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.6e-08 Score=97.17 Aligned_cols=56 Identities=9% Similarity=0.192 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++++++|++++.+++++.|++. ++ ++.+|.||+|+|...
T Consensus 154 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~-----~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 154 DALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCD-----AG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECS-----SE-EEEESEEEECCGGGH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeC-----CC-EEEcCEEEECCChhH
Confidence 466777888888999999999999999988887666643 34 899999999999643
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-07 Score=92.85 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++.+++|++++.+++++.+++. ++ ++.+|.||+|+|...
T Consensus 149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~-----~g-~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETA-----DG-EYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEES-----SC-EEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEEC-----CC-eEEcCEEEEcCCccH
Confidence 356677888888899999999999999887777666543 33 599999999999654
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-09 Score=111.34 Aligned_cols=107 Identities=22% Similarity=0.292 Sum_probs=81.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-----CC----------------------------HHHHH
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----MD----------------------------GEIRK 259 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----~d----------------------------~~~~~ 259 (507)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .+ .++.+
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~ 170 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQL 170 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHH
Confidence 3679999999999999999999999999999988654210 01 45666
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~---~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.+.+.+++.|++++++++|++++.+ ++.+.+++....+|...++.+|.||+|+|..+...
T Consensus 171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 7778888899999999999999764 34566666321022224689999999999988764
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=105.13 Aligned_cols=42 Identities=38% Similarity=0.582 Sum_probs=38.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
..+||+|||+|++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~ 166 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 166 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchh
Confidence 357999999999999999999999999999999888887643
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=101.60 Aligned_cols=35 Identities=37% Similarity=0.604 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
.++||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 35899999999999999999999999999999976
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-10 Score=122.52 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=47.8
Q ss_pred HHhcCcEEEcCceEEEEEEcCC--e-EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCce
Q 010573 265 LEKQKMKFMLKTKVVGVDLSGD--G-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329 (507)
Q Consensus 265 l~~~Gv~i~~~~~v~~i~~~~~--~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~ 329 (507)
+++.|+++++++.|+++..+++ . ..|++.+..+|+..++.+|.||+|+|..|+...|.+...|..
T Consensus 270 ~~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~ 337 (623)
T 3pl8_A 270 APEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL 337 (623)
T ss_dssp EEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSCC
T ss_pred ccCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCcc
Confidence 3445999999999999987643 3 346666544556678999999999999999876544444444
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-08 Score=98.23 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=34.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
..+.+||+|||||++|+++|+.|++.|++|+|+|+.+..
T Consensus 20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~ 58 (407)
T 3rp8_A 20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 58 (407)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 445699999999999999999999999999999997654
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-07 Score=100.95 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+.+++.|++++.+++|++++.+++++. +.+. ++ ++.+|.||+|+|...
T Consensus 151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~-----~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTA-----DG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-----TE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEEC-----Cc-EEECCEEEECCccch
Confidence 46777888888999999999999999988777654 5442 33 799999999999653
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=95.89 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=38.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
+||+||||||||++||..|+++|++|+|+||.+.+||.+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~ 42 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMS 42 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 7999999999999999999999999999999999999764
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.6e-08 Score=99.79 Aligned_cols=37 Identities=35% Similarity=0.396 Sum_probs=34.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
.+||||||||+||++||+.|++.|.+|+||||....+
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~ 43 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTR 43 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 5799999999999999999999999999999976553
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.4e-07 Score=93.31 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+..+...+.+.+++.|++++.+++|+++..+++++. +++.+..+++..++.+|.||.|+|...
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence 346677777888889999999999999988877754 776654455567899999999999653
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=99.09 Aligned_cols=47 Identities=38% Similarity=0.702 Sum_probs=39.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHC------CCcEEEEecCCCCCceeccccccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLNVGCIP 89 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~------g~~V~lie~~~~~GG~~~~~~~~p 89 (507)
.+||+|||||+||+++|+.|++. |.+|+||||.+.+|+.....+++.
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~ 87 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLD 87 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccC
Confidence 48999999999999999999999 999999999887776544334443
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=91.96 Aligned_cols=41 Identities=34% Similarity=0.520 Sum_probs=38.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
+||+|||||++|++||++|++.|++|+|+|+++.+||.+..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~ 41 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTN 41 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEE
Confidence 48999999999999999999999999999999999988754
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.1e-08 Score=101.12 Aligned_cols=38 Identities=34% Similarity=0.381 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
..+||+|||||++|+++|..|++.|++|+|||+.+...
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~ 85 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV 85 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 35899999999999999999999999999999976543
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-08 Score=107.14 Aligned_cols=41 Identities=34% Similarity=0.703 Sum_probs=37.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCce
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (507)
...+||+|||||++|++||..|++.|++|+|+|+.+.+||.
T Consensus 334 ~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 334 YHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGR 374 (776)
T ss_dssp GTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTT
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceece
Confidence 34689999999999999999999999999999998888884
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=93.16 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
++||+|||||++|+++|..|++.|.+|+|+|+.+..
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~ 41 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE 41 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 489999999999999999999999999999997654
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.2e-07 Score=88.46 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=78.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC---------------------CCC--C---------HHHHHHHH
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------------------PSM--D---------GEIRKQFQ 262 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------------~~~--d---------~~~~~~~~ 262 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ + .++.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 369999999999999999999999999999876421 111 0 57778888
Q ss_pred HHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 010573 263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 263 ~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
+.+++.|++++++++|++++.+++.+. +++. ++ ++.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~-----~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARD-----GR-QWLARAVISATGTW 131 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEETTEEEEEETT-----SC-EEEEEEEEECCCSG
T ss_pred HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeC-----CC-EEEeCEEEECCCCC
Confidence 888899999999999999998888777 6643 33 89999999999953
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-07 Score=96.76 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCceEEEEEEcCCe--EEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 255 GEIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 255 ~~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
..+.+.+.+.+++. |++++.+ +|++++.++++ +.+++. +++++.+|.||.|+|.....
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~-----~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTA-----TGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEET-----TSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEEC-----CCCEEECCEEEECCCCchhh
Confidence 35777788888888 9999999 99999875544 445543 34689999999999987754
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.8e-08 Score=99.86 Aligned_cols=144 Identities=13% Similarity=0.197 Sum_probs=76.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHH--HHhhhhhC----Ccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHE--AMHSFASH----GVK 113 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~----g~~ 113 (507)
+..++||+||||||+|+++|..|++.|.+|+||||.+..+..- ....+.... ...+.. +.+.+... ...
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~-r~~~l~~~~----~~~l~~lGl~~~~~~~~~~~~~~ 82 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGES-RGLGFTART----MEVFDQRGILPRFGEVETSTQGH 82 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCC-CSEEECHHH----HHHHHTTTCGGGGCSCCBCCEEE
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC-CcceECHHH----HHHHHHCCCHHHHHhcccccccc
Confidence 4456899999999999999999999999999999976553210 000111100 000000 00000000 000
Q ss_pred cCccccChHHHHH-HHH---HHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCCc-eEEEEeCeEEEccC
Q 010573 114 FSSVEVDLPAMMA-QKD---KAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGG-NTVVKGKNIIIATG 185 (507)
Q Consensus 114 ~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g~-~~~~~~d~lvlAtG 185 (507)
+....++...+.. ... -....+...+.+.+++.++++..+. +..+ +.+.+++.+.++. ..++.+|+||.|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG 162 (500)
T 2qa1_A 83 FGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDG 162 (500)
T ss_dssp ETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCC
T ss_pred ccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCC
Confidence 0000011100000 000 0012233444555666789988873 4433 5566777765542 34799999999999
Q ss_pred CCC
Q 010573 186 SDV 188 (507)
Q Consensus 186 ~~p 188 (507)
...
T Consensus 163 ~~S 165 (500)
T 2qa1_A 163 GRS 165 (500)
T ss_dssp TTC
T ss_pred cch
Confidence 865
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=89.78 Aligned_cols=43 Identities=35% Similarity=0.445 Sum_probs=37.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~ 84 (507)
..+||+|||||++|+++|..|++. |++|+|+|+....||.+..
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~ 108 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 108 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccc
Confidence 346999999999999999999998 9999999998888765443
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.4e-07 Score=91.70 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=37.2
Q ss_pred CcEEEECCChHHHHHHHHHHH---CCCcEEEEecCCCCCceec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~---~g~~V~lie~~~~~GG~~~ 83 (507)
+||+|||||++|+++|+.|++ .|++|+|+||+...||.+.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~ 44 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMT 44 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGC
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCcccee
Confidence 699999999999999999999 8999999999988888654
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.9e-08 Score=97.65 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=33.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
..+||+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP 40 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 3579999999999999999999999999999997653
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.1e-07 Score=89.96 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=34.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCc-EEEEecCCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRGALG 79 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~-V~lie~~~~~G 79 (507)
..+||+|||||++|+++|..|++.|.+ |+|+|+.+.++
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~ 41 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence 458999999999999999999999999 99999977654
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-07 Score=90.44 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
+..+||+|||||++|+++|..|++.|.+|+|||+.+..
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 61 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR 61 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSST
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCc
Confidence 45689999999999999999999999999999997654
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.2e-07 Score=91.74 Aligned_cols=38 Identities=37% Similarity=0.635 Sum_probs=34.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
..+||+|||||++|+++|+.|++.|.+|+||||.+..+
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~ 41 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS 41 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 35899999999999999999999999999999976553
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=94.39 Aligned_cols=35 Identities=23% Similarity=0.534 Sum_probs=32.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
++||+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 36 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 37999999999999999999999999999999653
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-07 Score=96.11 Aligned_cols=37 Identities=35% Similarity=0.526 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
.+||||||||+||++||+.|++.|.+|+||||....+
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~ 54 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTR 54 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGG
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCC
Confidence 4799999999999999999999999999999976443
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-07 Score=88.86 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=80.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC---------------CCC----CHHHHHHHHHHHHhcCcEEEcC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------------PSM----DGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------~~~----d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++...+.+.+++.|++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 579999999999999999999999999999876421 111 2567778888888899999999
Q ss_pred ceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecC---CCCCC
Q 010573 276 TKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGR---TPFTA 319 (507)
Q Consensus 276 ~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~---~p~~~ 319 (507)
++|++++..++ .+.+.+. ++ ++.+|.||+|+|. .|...
T Consensus 88 ~~v~~i~~~~~~~~~v~~~-----~g-~~~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 88 QAVESVEKQADGVFKLVTN-----EE-THYSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp CCEEEEEECTTSCEEEEES-----SE-EEEEEEEEECCTTSCCEECCC
T ss_pred CEEEEEEECCCCcEEEEEC-----CC-EEEeCEEEECCCCCcCCCCCC
Confidence 99999988766 5667664 34 4999999999999 77654
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-07 Score=87.73 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=79.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc--Ccc--------CCCC----CHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA--ADI--------VPSM----DGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~--~~~--------~~~~----d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++. ..+ .+.+ ..++...+.+.+++.|++++. +++++
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 94 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK 94 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence 58999999999999999999999999999985 111 1222 246777788888889999999 89999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+..+++.+.+.+. ++.++.+|.+|+|+|..|....
T Consensus 95 i~~~~~~~~v~~~-----~g~~~~~d~lvlAtG~~~~~~~ 129 (323)
T 3f8d_A 95 IENRGDEFVVKTK-----RKGEFKADSVILGIGVKRRKLG 129 (323)
T ss_dssp EEEC--CEEEEES-----SSCEEEEEEEEECCCCEECCCC
T ss_pred EEecCCEEEEEEC-----CCCEEEcCEEEECcCCCCccCC
Confidence 9887777777764 4468999999999999987643
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-07 Score=92.12 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
.+||+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~ 40 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 48999999999999999999999999999999764
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.5e-06 Score=87.41 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 254 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+..+...+.+..++.|++++.+++|+++..+++.+. +++.+..++++.++.+|.||+|+|...
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws 250 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWV 250 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGH
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhH
Confidence 345666677778889999999999999988776643 665543344555899999999999653
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=89.05 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=81.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---cCCe---eEEEcccCccC---C----------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWAR---LGSE---VTVVEFAADIV---P---------------------------------- 251 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~---~g~~---Vtlv~~~~~~~---~---------------------------------- 251 (507)
++|+|||+|+.|+.+|..|++ .|.+ |+++++.+.+. .
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 689999999999999999999 9999 99999876431 0
Q ss_pred CC---------------CHHHHHHHHHHHHhcCcE--EEcCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEee
Q 010573 252 SM---------------DGEIRKQFQRSLEKQKMK--FMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSA 312 (507)
Q Consensus 252 ~~---------------d~~~~~~~~~~l~~~Gv~--i~~~~~v~~i~~~~~--~v~v~~~~~~~g~~~~i~~D~vi~a~ 312 (507)
.+ ..++.+.+.+.+++.|++ ++++++|+.++..++ ...|++.+..++...++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 00 034556677777778988 899999999987665 66777654333334679999999999
Q ss_pred c--CCCCCCC
Q 010573 313 G--RTPFTAG 320 (507)
Q Consensus 313 G--~~p~~~~ 320 (507)
| ..|+...
T Consensus 163 G~~s~p~~p~ 172 (464)
T 2xve_A 163 GHFSTPYVPE 172 (464)
T ss_dssp CSSSSBCCCC
T ss_pred CCCCCCccCC
Confidence 9 6776543
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.5e-08 Score=98.40 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=75.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHH--HhhhhhC----CcccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA--MHSFASH----GVKFS 115 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~----g~~~~ 115 (507)
.++||+||||||+|+++|..|++.|.+|+|||+.+..+... ....+.... ...+..+ .+.+... ...+.
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~-r~~~l~~~~----~~~l~~lGl~~~~~~~~~~~~~~~~ 85 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGES-RGLGFTART----MEVFDQRGILPAFGPVETSTQGHFG 85 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCC-CSEEECHHH----HHHHHHTTCGGGGCSCCEESEEEET
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-ceeEECHHH----HHHHHHCCCHHHHHhccccccceec
Confidence 46899999999999999999999999999999976553210 000111100 0001000 0000000 00000
Q ss_pred ccccChHHHH---HH-HHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCCc-eEEEEeCeEEEccCCC
Q 010573 116 SVEVDLPAMM---AQ-KDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGG-NTVVKGKNIIIATGSD 187 (507)
Q Consensus 116 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g~-~~~~~~d~lvlAtG~~ 187 (507)
...++...+. +. ..-....+...+.+.+++.++++..+. +..+ +.+.+++.+.++. ..++.+|+||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 165 (499)
T 2qa2_A 86 GRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGR 165 (499)
T ss_dssp TEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTT
T ss_pred ceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcc
Confidence 0000000000 00 000012233444555666789988873 4433 4556677665542 3479999999999986
Q ss_pred C
Q 010573 188 V 188 (507)
Q Consensus 188 p 188 (507)
.
T Consensus 166 S 166 (499)
T 2qa2_A 166 S 166 (499)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-07 Score=90.47 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALG 79 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~G 79 (507)
.+||+|||||++|+++|+.|++. |++|+|||+....+
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~ 74 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN 74 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSC
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 48999999999999999999999 99999999965443
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=84.62 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=77.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC---------------CCC----CHHHHHHHHHHHHhcCcEEEcC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------------PSM----DGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------~~~----d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++...+.+.+++.+++++.+
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG 85 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 579999999999999999999999999999876431 111 1466677778888889999999
Q ss_pred ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 276 ~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
+.|+.++.+++.+.+.+. ++.++.+|.||+|+|..
T Consensus 86 ~~v~~i~~~~~~~~v~~~-----~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 86 ERAETLEREGDLFKVTTS-----QGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp CCEEEEEEETTEEEEEET-----TSCEEEEEEEEECCTTS
T ss_pred CEEEEEEECCCEEEEEEC-----CCCEEEeCEEEECCCCC
Confidence 999999887766666653 34579999999999984
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.1e-08 Score=99.69 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=39.9
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHH-CCCcEEEEecCCCCCceec
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~~GG~~~ 83 (507)
.....+||+|||||++||+||++|++ .|++|+|+|+++++||.|.
T Consensus 6 ~p~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 6 HPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLAS 51 (513)
T ss_dssp CCSEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGC
T ss_pred CCCCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCee
Confidence 33446899999999999999999987 4999999999999999764
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.4e-07 Score=86.55 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=83.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC----cc------------CCCC-----CHHHHHHHHHHHHhcCcEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA----DI------------VPSM-----DGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~----~~------------~~~~-----d~~~~~~~~~~l~~~Gv~i 272 (507)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ .+.+ .+++...+.+.+++.|+++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 101 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI 101 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 5789999999999999999999999999999844 11 1122 2477788888999999999
Q ss_pred EcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.++ ++.++.+++.+.+.+.. ..++.++.+|.+|+|+|.+|....
T Consensus 102 ~~~~-v~~i~~~~~~~~v~~~~--~~~~~~~~~d~vvlAtG~~~~~~~ 146 (338)
T 3itj_A 102 ITET-VSKVDLSSKPFKLWTEF--NEDAEPVTTDAIILATGASAKRMH 146 (338)
T ss_dssp ECSC-EEEEECSSSSEEEEETT--CSSSCCEEEEEEEECCCEEECCCC
T ss_pred EEeE-EEEEEEcCCEEEEEEEe--cCCCcEEEeCEEEECcCCCcCCCC
Confidence 9988 99998877777776531 224567999999999999887653
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=87.15 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=80.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCccC---CC------------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIV---PS------------------------------------ 252 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~---~~------------------------------------ 252 (507)
..+|+|||+|+.|+.+|..|++.|. +|+++++.+.+. ..
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 4689999999999999999999999 999999875331 00
Q ss_pred -------------C--------------CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCc-eEEEE
Q 010573 253 -------------M--------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGE-KTILE 304 (507)
Q Consensus 253 -------------~--------------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~-~~~i~ 304 (507)
+ ..++.+.+.+..++.+..++++++|+.++..++.+.+++.+..+|. ..++.
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~ 165 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI 165 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEE
Confidence 0 0144556666666667889999999999888888888876422233 34799
Q ss_pred cCEEEEeecC--CCCCC
Q 010573 305 ADVVLVSAGR--TPFTA 319 (507)
Q Consensus 305 ~D~vi~a~G~--~p~~~ 319 (507)
+|.||+|+|. .|+..
T Consensus 166 ~d~VVvAtG~~s~p~~p 182 (447)
T 2gv8_A 166 FDAVSICNGHYEVPYIP 182 (447)
T ss_dssp ESEEEECCCSSSSBCBC
T ss_pred eCEEEECCCCCCCCCCC
Confidence 9999999998 66654
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=6.2e-07 Score=94.18 Aligned_cols=36 Identities=36% Similarity=0.436 Sum_probs=33.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
.+||||||||.||++||++|++.|.+|+||||....
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 479999999999999999999999999999997654
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-07 Score=94.25 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=42.2
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecCCCCCceeccc
Q 010573 38 ASASDENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGALGGTCLNV 85 (507)
Q Consensus 38 ~~~~~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~GG~~~~~ 85 (507)
++|..++||+|||||++|++||..|++. |++|+|+|+++.+||.|...
T Consensus 2 ~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~ 50 (399)
T 1v0j_A 2 QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSE 50 (399)
T ss_dssp --CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEE
T ss_pred CcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeec
Confidence 4456679999999999999999999999 99999999999999998653
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=88.93 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=33.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGAL 78 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~ 78 (507)
.++||+|||||++|+++|++|++.| .+|+|||++..+
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~ 59 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAP 59 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSST
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCC
Confidence 4689999999999999999999999 999999994433
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-07 Score=87.49 Aligned_cols=49 Identities=27% Similarity=0.282 Sum_probs=40.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC------CCceeccccccchh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA------LGGTCLNVGCIPSK 91 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~------~GG~~~~~~~~p~~ 91 (507)
++||+|||||+||+.||+.|++.|++|+|+|++.. ..+.+....|.|+.
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSi 55 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSL 55 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSCCSSCTTCCCSCCEE
T ss_pred CCCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccccCCCccccccCcCC
Confidence 37999999999999999999999999999998762 23555666677754
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=8e-07 Score=93.67 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=37.2
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHH-CCCcEEEEecCCCCC
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGALG 79 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~~G 79 (507)
|.++...+||+||||||+|+++|..|++ .|.+|+||||.+..+
T Consensus 26 m~~~~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~ 69 (639)
T 2dkh_A 26 TEAVPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM 69 (639)
T ss_dssp CSSCCSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred cCCCCCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence 4445567899999999999999999999 999999999976543
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.5e-06 Score=82.99 Aligned_cols=98 Identities=21% Similarity=0.290 Sum_probs=78.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCc-----------cCCCC----C-HHHHHHHHHHHHhcCcEEEcCceE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAAD-----------IVPSM----D-GEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~-----------~~~~~----d-~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
+++|||+|+.|+.+|..|++.|. +|+++++... ..+.+ + +++.+.+.+.+++.|++++. .++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v 81 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV 81 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence 68999999999999999999999 9999997531 01221 2 46677778888889999997 789
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+.++.+++.+.+.+. +++++.+|.+|+|+|..|...
T Consensus 82 ~~i~~~~~~~~v~~~-----~g~~~~~~~vv~AtG~~~~~~ 117 (311)
T 2q0l_A 82 QRVSKKDSHFVILAE-----DGKTFEAKSVIIATGGSPKRT 117 (311)
T ss_dssp EEEEEETTEEEEEET-----TSCEEEEEEEEECCCEEECCC
T ss_pred EEEEEcCCEEEEEEc-----CCCEEECCEEEECCCCCCCCC
Confidence 999877776666653 446899999999999888654
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-06 Score=83.30 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=78.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc---------CCCC----CHHHHHHHHHHHHhc-CcEEEcCceEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI---------VPSM----DGEIRKQFQRSLEKQ-KMKFMLKTKVVG 280 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~---------~~~~----d~~~~~~~~~~l~~~-Gv~i~~~~~v~~ 280 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. .+.. ..++...+.+.+++. +++++. .+++.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVE-GRVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEE
Confidence 47999999999999999999999999999964321 1111 146667777777776 788875 58999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
++.+++...+++. +++++.+|.+|+|+|..|...
T Consensus 82 i~~~~~~~~v~~~-----~g~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 82 AKGSFGEFIVEID-----GGRRETAGRLILAMGVTDELP 115 (297)
T ss_dssp EEEETTEEEEEET-----TSCEEEEEEEEECCCCEEECC
T ss_pred EEEcCCeEEEEEC-----CCCEEEcCEEEECCCCCCCCC
Confidence 9888877777764 456899999999999988764
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.5e-07 Score=90.49 Aligned_cols=99 Identities=19% Similarity=0.333 Sum_probs=79.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc------------------------------------C------C
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI------------------------------------V------P 251 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~------------------------------------~------~ 251 (507)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+ + +
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 468999999999999999999999999999987432 0 0
Q ss_pred CC------------------------------CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCce
Q 010573 252 SM------------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEK 300 (507)
Q Consensus 252 ~~------------------------------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~ 300 (507)
.. ...+.+.+.+.+++.|++++++++|++++.+++++. +++. ++
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~-----~G 261 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS-----NG 261 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEET-----TS
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEEC-----CC
Confidence 00 034556677778889999999999999988776654 6654 45
Q ss_pred EEEEcCEEEEeecCCCC
Q 010573 301 TILEADVVLVSAGRTPF 317 (507)
Q Consensus 301 ~~i~~D~vi~a~G~~p~ 317 (507)
+++.+|.||+|+|..+.
T Consensus 262 ~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 262 EEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp CEEECSCEEECCCTTCH
T ss_pred CEEECCEEEECCCCChh
Confidence 68999999999999885
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-06 Score=87.40 Aligned_cols=39 Identities=36% Similarity=0.463 Sum_probs=34.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCce
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~ 81 (507)
++||+|||||++|+++|+.|++.|++|+|+|+++..+|.
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~gt 41 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACAT 41 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCCc
Confidence 589999999999999999999999999999997644443
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-07 Score=93.98 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=42.0
Q ss_pred CCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 38 ~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
..|...+||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus 6 ~~~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 6 ETIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp -CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred hhccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccc
Confidence 34556789999999999999999999999999999999999998754
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.3e-06 Score=83.58 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=78.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC---------------CCC----CHHHHHHHHHHHHhcCcEEEc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------------PSM----DGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------------~~~----d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++.+.+.+.+++.|++++.
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL 93 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence 3579999999999999999999999999999876431 111 156777778888888999999
Q ss_pred CceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 275 KTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 275 ~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
++.|+.++.+++ .+.+++. +++++.+|.+|+|+|..+
T Consensus 94 ~~~v~~i~~~~~~~~~v~~~-----~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 94 NETVTKYTKLDDGTFETRTN-----TGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp SCCEEEEEECTTSCEEEEET-----TSCEEEEEEEEECCTTCS
T ss_pred CCEEEEEEECCCceEEEEEC-----CCcEEEeeEEEEccCCCc
Confidence 999999987654 5666653 446799999999999854
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.9e-07 Score=87.22 Aligned_cols=99 Identities=15% Similarity=0.270 Sum_probs=75.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC---CCCC---------HHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---PSMD---------GEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~d---------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
-+|+|||+|+.|+.+|..|.+.+.+|+++++.+.+. +.+. .++.....+.+++.||+++++++|++++
T Consensus 10 ~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~id 89 (385)
T 3klj_A 10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSID 89 (385)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEEE
T ss_pred CCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEEE
Confidence 479999999999999999988889999999877531 1111 1111223466778899999999999997
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.++.. +++. +++++.+|.+|+|||.+|....
T Consensus 90 ~~~~~--v~~~-----~g~~~~yd~lvlAtG~~p~~p~ 120 (385)
T 3klj_A 90 PNNKL--VTLK-----SGEKIKYEKLIIASGSIANKIK 120 (385)
T ss_dssp TTTTE--EEET-----TSCEEECSEEEECCCEEECCCC
T ss_pred CCCCE--EEEC-----CCCEEECCEEEEecCCCcCCCC
Confidence 66654 4443 5578999999999999987653
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=89.99 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=32.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHH---CCCcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~---~g~~V~lie~~~ 76 (507)
..+||+|||||++|+++|..|++ .|.+|+|||+..
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 35899999999999999999999 999999999954
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=91.05 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=34.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
..+||+||||||+|+++|..|++.|.+|+||||.+..+
T Consensus 25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~ 62 (549)
T 2r0c_A 25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTI 62 (549)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 45899999999999999999999999999999977654
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.3e-07 Score=91.43 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=32.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHH------------CCCcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQ------------LGLKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~------------~g~~V~lie~~~ 76 (507)
..+||+|||||+||+++|..|++ .|++|+|||+.+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 45899999999999999999999 899999999964
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-06 Score=84.62 Aligned_cols=97 Identities=23% Similarity=0.311 Sum_probs=76.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-----------------CC-------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-----------------PS------------------------- 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------~~------------------------- 252 (507)
.+|+|||+|+.|+.+|..+++.|.+|+++++.+.+. ..
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 369999999999999999999999999999876431 00
Q ss_pred ----------------------CCHHHHHHHHHHHHhcCcEEEcCceEEEEEEc----CCeEEEEEeecCCCceEEEEcC
Q 010573 253 ----------------------MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS----GDGVKLTLEPAAGGEKTILEAD 306 (507)
Q Consensus 253 ----------------------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~----~~~v~v~~~~~~~g~~~~i~~D 306 (507)
...++.+.+.+.+++.|++++++++++++..+ ++++.+++. ++ ++.+|
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~-----~g-~i~ad 158 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN-----ST-QWQCK 158 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET-----TE-EEEES
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEEC-----CC-EEECC
Confidence 12345566777888899999999999999866 555666542 33 79999
Q ss_pred EEEEeecCCCC
Q 010573 307 VVLVSAGRTPF 317 (507)
Q Consensus 307 ~vi~a~G~~p~ 317 (507)
.||+|+|..+.
T Consensus 159 ~VVlAtG~~s~ 169 (401)
T 2gqf_A 159 NLIVATGGLSM 169 (401)
T ss_dssp EEEECCCCSSC
T ss_pred EEEECCCCccC
Confidence 99999999884
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.4e-07 Score=91.20 Aligned_cols=98 Identities=19% Similarity=0.347 Sum_probs=75.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---cCCeeEEEcccCcc--CC---------CCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWAR---LGSEVTVVEFAADI--VP---------SMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~~~--~~---------~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+ .+ ....++...+.+.+++.||+++ ..+++.
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~-~~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEE-CSCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEE-EeEEEE
Confidence 689999999999999999999 79999999988864 11 1112333345677788999998 568999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
++.+++ .+++. +++++.+|.+|+|+|.+|+...
T Consensus 84 id~~~~--~V~~~-----~g~~i~~d~lviAtG~~~~~~~ 116 (437)
T 3sx6_A 84 IDAEAQ--NITLA-----DGNTVHYDYLMIATGPKLAFEN 116 (437)
T ss_dssp EETTTT--EEEET-----TSCEEECSEEEECCCCEECGGG
T ss_pred EEcCCC--EEEEC-----CCCEEECCEEEECCCCCcCccc
Confidence 976555 34443 4568999999999999987653
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-06 Score=83.81 Aligned_cols=97 Identities=20% Similarity=0.325 Sum_probs=77.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-----------------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS----------------------------------------- 252 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~----------------------------------------- 252 (507)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 468999999999999999999999999999987654210
Q ss_pred ---CC-----------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 253 ---MD-----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 253 ---~d-----------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
++ ..+.+.+.+.+++.|++++.+++|++++. ++ .+++. +++++.+|.||.|+|..+..
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~-~v~~~-----~g~~~~ad~vV~AdG~~s~v 162 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG-RLTLQ-----TGEVLEADLIVGADGVGSKV 162 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT-EEEET-----TSCEEECSEEEECCCTTCHH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC-EEEEC-----CCCEEEcCEEEECCCccHHH
Confidence 00 34566677788888999999999999976 33 66654 34589999999999988754
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-07 Score=88.25 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=42.9
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC-CCCCceecc
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLN 84 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~~GG~~~~ 84 (507)
.+++...+||+|||||++|++||+.|++.|++|+|+|++ +.+||.|..
T Consensus 38 ~~~~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t 86 (376)
T 2e1m_A 38 LNPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86 (376)
T ss_dssp SSSCCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCE
T ss_pred CCCCCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceee
Confidence 444556789999999999999999999999999999999 899998764
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-06 Score=81.67 Aligned_cols=97 Identities=21% Similarity=0.351 Sum_probs=75.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccC------c------c-CCC----------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA------D------I-VPS---------------------------- 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~------~------~-~~~---------------------------- 252 (507)
.+|+|||+|+.|+.+|..|++.|. +|+++++.+ . + .+.
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 469999999999999999999999 999999875 0 0 000
Q ss_pred CC-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 253 MD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 253 ~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.+ .++...+.+.+++.|++++.++.|++++.+++.+.+... ++ ++.+|.||+|+|..+.
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~-----~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATT-----TE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEES-----SC-CEEEEEEEECCCSTTS
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeC-----CC-EEEeCEEEECCCCCCc
Confidence 01 345556677778889999999999999877666776653 22 5899999999998764
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.5e-06 Score=81.37 Aligned_cols=99 Identities=24% Similarity=0.282 Sum_probs=77.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEE-EcccCc---c--------CCCCC-----HHHHHHHHHHHHhcCcEEEcCc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTV-VEFAAD---I--------VPSMD-----GEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtl-v~~~~~---~--------~~~~d-----~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
..+|+|||+|+.|+.+|..|++.|.+|++ +++... + .+.++ .++...+.+.+++.|++++.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 82 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV- 82 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC-
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE-
Confidence 35899999999999999999999999999 887321 0 12222 577788888889999999988
Q ss_pred eEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 277 KVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 277 ~v~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
++..+ .++ +.+.+.+.. ++ ++.+|.+|+|+|..|...
T Consensus 83 ~v~~i-~~~~~~~~~v~~~~----~~-~~~~d~lvlAtG~~~~~~ 121 (315)
T 3r9u_A 83 GVEQI-LKNSDGSFTIKLEG----GK-TELAKAVIVCTGSAPKKA 121 (315)
T ss_dssp CEEEE-EECTTSCEEEEETT----SC-EEEEEEEEECCCEEECCC
T ss_pred EEEEE-ecCCCCcEEEEEec----CC-EEEeCEEEEeeCCCCCCC
Confidence 88888 665 566643431 33 899999999999988764
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.5e-06 Score=80.91 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=76.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-----------IVPSM-----DGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-----------~~~~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
.+++|||+|+.|+.+|..|++.|.+|+++++... ..+.+ ..++.+.+.+.+++.|++++. ..+
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 87 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV 87 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence 5799999999999999999999999999998721 01122 246667778888889999987 688
Q ss_pred EEEEEc--CCe-EEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 279 VGVDLS--GDG-VKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 279 ~~i~~~--~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+.++.+ ++. +.+.+. +++++.+|.+|+|+|.+|...
T Consensus 88 ~~i~~~~~~~~~~~v~~~-----~g~~~~~~~vv~AtG~~~~~~ 126 (325)
T 2q7v_A 88 QGVQHDATSHPYPFTVRG-----YNGEYRAKAVILATGADPRKL 126 (325)
T ss_dssp EEEEECTTSSSCCEEEEE-----SSCEEEEEEEEECCCEEECCC
T ss_pred EEEEeccCCCceEEEEEC-----CCCEEEeCEEEECcCCCcCCC
Confidence 888765 443 455543 446899999999999988654
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=5.6e-07 Score=90.09 Aligned_cols=44 Identities=32% Similarity=0.659 Sum_probs=40.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~ 84 (507)
...+||+|||||++|++||+.|++.| ++|+|+|+++.+||.+..
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t 48 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS 48 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccc
Confidence 34689999999999999999999999 999999999999997654
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.3e-06 Score=90.06 Aligned_cols=35 Identities=49% Similarity=0.685 Sum_probs=32.2
Q ss_pred CCcEEEECCChHHHHHHHHHH---H-CCCcEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAA---Q-LGLKTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~---~-~g~~V~lie~~~~ 77 (507)
.+||||||||+||++||+.|+ + .|.+|+||||...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 489999999999999999999 6 8999999999764
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-06 Score=81.44 Aligned_cols=99 Identities=11% Similarity=0.159 Sum_probs=76.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC--ccC-----C------C-CCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA--DIV-----P------S-MDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~--~~~-----~------~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+|+|||+|+.|+.+|..+++.|.+|+++++.. .+. + . ..+++...+.+.+++.|++++.+++++.+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 82 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence 68999999999999999999999999996531 110 0 0 12467777888888899999999999999
Q ss_pred EEcC---CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 282 DLSG---DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 282 ~~~~---~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
..+. +...+.+. +++++.+|.+|+|+|.+|...
T Consensus 83 ~~~~~~~~~~~v~~~-----~g~~~~~~~lv~AtG~~~~~~ 118 (310)
T 1fl2_A 83 IPAAVEGGLHQIETA-----SGAVLKARSIIVATGAKWRNM 118 (310)
T ss_dssp ECCSSTTCCEEEEET-----TSCEEEEEEEEECCCEEECCC
T ss_pred EecccCCceEEEEEC-----CCCEEEeCEEEECcCCCcCCC
Confidence 6542 25566654 345799999999999988654
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.3e-07 Score=89.26 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=76.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---cCCeeEEEcccCccC--CC---------CCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWAR---LGSEVTVVEFAADIV--PS---------MDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~~~~--~~---------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. +. ...++...+.+.+++.|++++.+ +++.
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 899999999887541 11 12233444667778889999987 8999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
++.++..+. +.+. .+...++.+|.+|+|+|.+|+..
T Consensus 81 i~~~~~~V~--~~~g-~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 81 IDAKSSMVY--YTKP-DGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp EETTTTEEE--EECT-TSCEEEEECSEEEECCCCEECGG
T ss_pred EeCCCCEEE--EccC-CcccceeeCCEEEECCCCCcCcc
Confidence 876655444 3321 22235699999999999998765
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-06 Score=84.50 Aligned_cols=99 Identities=19% Similarity=0.342 Sum_probs=78.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-------------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------- 251 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------- 251 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+....
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998654300
Q ss_pred --C--------------CC-HHHHHHHHHHHHhc-CcEEEcCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEe
Q 010573 252 --S--------------MD-GEIRKQFQRSLEKQ-KMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVS 311 (507)
Q Consensus 252 --~--------------~d-~~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~g~~~~i~~D~vi~a 311 (507)
. ++ ..+.+.+.+.+++. |++++++++|++++.+++++ .+++. +++++.+|.||.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~-----~g~~~~ad~vV~A 161 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLN-----DGRVLRPRVVVGA 161 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEET-----TSCEEEEEEEEEC
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEEC-----CCCEEECCEEEEC
Confidence 0 00 24455666777776 99999999999998887777 77764 3458999999999
Q ss_pred ecCCCCC
Q 010573 312 AGRTPFT 318 (507)
Q Consensus 312 ~G~~p~~ 318 (507)
+|..+..
T Consensus 162 dG~~s~v 168 (399)
T 2x3n_A 162 DGIASYV 168 (399)
T ss_dssp CCTTCHH
T ss_pred CCCChHH
Confidence 9987653
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=7.9e-06 Score=82.50 Aligned_cols=97 Identities=22% Similarity=0.356 Sum_probs=68.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||++|+.+|..|++.|.+|+|+|+.+.+. |. ..
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l---------~~----~~-------------------------- 207 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL---------PT----MD-------------------------- 207 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC---------TT----SC--------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc---------cc----cC--------------------------
Confidence 4689999999999999999999999999999865431 10 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+++++.+ .+..++ .+.+.+.+.++ .++.+|.||+|+|.+|..
T Consensus 208 ----------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~~D~vv~A~G~~p~~ 266 (455)
T 2yqu_A 208 ----------LEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGG--EVLEADRVLVAVGRRPYT 266 (455)
T ss_dssp ----------HHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEECC
T ss_pred ----------HHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCC--eEEEcCEEEECcCCCcCC
Confidence 011122334556678998877 344443 44566666666 679999999999998853
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-06 Score=86.63 Aligned_cols=102 Identities=22% Similarity=0.408 Sum_probs=77.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC--CC-----CCH------HHHHHHHHHHHhcCcEEEcCceEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--PS-----MDG------EIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~--~~-----~d~------~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. +. ... ++.....+.+++.|++++.+++++
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5899999999999999999998 89999999887642 11 001 111113466778899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.++.+++.+.+... +++.++.+|.+|+|+|.+|....
T Consensus 83 ~id~~~~~v~v~~~----~~~~~~~~d~lviAtG~~p~~p~ 119 (452)
T 3oc4_A 83 AMDVENQLIAWTRK----EEQQWYSYDKLILATGASQFSTQ 119 (452)
T ss_dssp EEETTTTEEEEEET----TEEEEEECSEEEECCCCCBCCCC
T ss_pred EEECCCCEEEEEec----CceEEEEcCEEEECCCcccCCCC
Confidence 99877777766521 25678999999999999987653
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.7e-06 Score=83.30 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=75.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC------CCHHHHHH---------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------MDGEIRKQ--------------------------- 260 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------~d~~~~~~--------------------------- 260 (507)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... +.+...+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987653211 22222221
Q ss_pred ----------------HHHHHHh--cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 261 ----------------FQRSLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 261 ----------------~~~~l~~--~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+.+.|.+ .|++++++++|++++.+++++.+++. +++++.+|.||.|.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFS-----DGTKAEANWVIGADGGASV 154 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEET-----TSCEEEESEEEECCCTTCH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEEC-----CCCEEECCEEEECCCcchh
Confidence 2222222 37899999999999988888888875 4568999999999998764
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.8e-07 Score=87.36 Aligned_cols=44 Identities=27% Similarity=0.491 Sum_probs=40.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
...+||+|||||++|+++|..|++.|++|+|+|+++.+||.|..
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 70 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYD 70 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCC
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccce
Confidence 45689999999999999999999999999999999999998764
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.5e-06 Score=79.34 Aligned_cols=98 Identities=19% Similarity=0.244 Sum_probs=76.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc---c--------CCCC----CHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPSM----DGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------~~~~----d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
.+++|||+|+.|+.+|..|++.|.+|+++++... . .+.+ ..++...+.+.+++.|++++. .+++
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~ 95 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR 95 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence 5799999999999999999999999999997421 0 1111 245667777888889999988 7899
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.++.+++.+.+.+ ++.++.+|.+|+|+|..|...
T Consensus 96 ~i~~~~~~~~v~~------~~~~~~~~~li~AtG~~~~~~ 129 (319)
T 3cty_A 96 SIKKTQGGFDIET------NDDTYHAKYVIITTGTTHKHL 129 (319)
T ss_dssp EEEEETTEEEEEE------SSSEEEEEEEEECCCEEECCC
T ss_pred EEEEeCCEEEEEE------CCCEEEeCEEEECCCCCcccC
Confidence 9987777666654 234799999999999887654
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.25 E-value=5.7e-07 Score=92.58 Aligned_cols=43 Identities=37% Similarity=0.601 Sum_probs=39.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
.++||+|||||+||++||..|++.|++|+|+|+++.+||.+..
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t 45 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYT 45 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceee
Confidence 3579999999999999999999999999999999999998643
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-06 Score=87.22 Aligned_cols=100 Identities=23% Similarity=0.312 Sum_probs=79.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--------C-------------CC----------------CHHH
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------P-------------SM----------------DGEI 257 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------~-------------~~----------------d~~~ 257 (507)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + .+ .+++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 579999999999999999999999999999865321 0 01 1466
Q ss_pred HHHHHHHHHhcCc--EEEcCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeec--CCCCCC
Q 010573 258 RKQFQRSLEKQKM--KFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAG--RTPFTA 319 (507)
Q Consensus 258 ~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~~--~v~v~~~~~~~g~~~~i~~D~vi~a~G--~~p~~~ 319 (507)
.+.+.+..++.|+ +++++++|++++.+++ .+.+++. +++++.+|.||+|+| ..|...
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~-----~G~~i~ad~lV~AtG~~s~p~~p 164 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTD-----RGDEVSARFLVVAAGPLSNANTP 164 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEET-----TCCEEEEEEEEECCCSEEECCCC
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEEC-----CCCEEEeCEEEECcCCCCCCCCC
Confidence 7777888888888 8999999999987665 5666654 456799999999999 566554
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.3e-06 Score=81.39 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=77.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcc----cCcc------------CCCC-----CHHHHHHHHHHHHhcCcEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEF----AADI------------VPSM-----DGEIRKQFQRSLEKQKMKFM 273 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~----~~~~------------~~~~-----d~~~~~~~~~~l~~~Gv~i~ 273 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++ ...+ .+.+ ..++...+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999999999999999999997 2211 1111 24667777888888999999
Q ss_pred cCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 274 ~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.++ ++.++.+++.+.+++ ++.++.+|.+|+|+|.+|...
T Consensus 89 ~~~-v~~i~~~~~~~~v~~------~~~~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 89 TET-VTKVDFSSKPFKLFT------DSKAILADAVILAIGAVAKRL 127 (333)
T ss_dssp CCC-CCEEECSSSSEEEEC------SSEEEEEEEEEECCCEEECCC
T ss_pred EeE-EEEEEEcCCEEEEEE------CCcEEEcCEEEECCCCCcCCC
Confidence 886 888877666666654 346899999999999988654
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.7e-06 Score=84.66 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=72.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC---C--------CCH-HHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---S--------MDG-EIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~--------~d~-~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
.+.+++|||+|+.|+.+|..+++.| +|+++++.+.... . .+. ++.....+.+++.|++++.++.++.
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~ 85 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL 85 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence 4688999999999999999999999 9999998765311 0 111 1111234556778999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
++..... ++ . +++++.+|.+|+|||.+|....
T Consensus 86 id~~~~~--V~-~-----~g~~~~~d~lViATGs~p~~p~ 117 (367)
T 1xhc_A 86 IDRGRKV--VI-T-----EKGEVPYDTLVLATGARAREPQ 117 (367)
T ss_dssp EETTTTE--EE-E-----SSCEEECSEEEECCCEEECCCC
T ss_pred EECCCCE--EE-E-----CCcEEECCEEEECCCCCCCCCC
Confidence 8654433 33 2 4468999999999999987653
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.6e-06 Score=79.21 Aligned_cols=98 Identities=15% Similarity=0.232 Sum_probs=76.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc-----------cCCCC-----CHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-----------IVPSM-----DGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-----------~~~~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+.+ .+++.+.+.+.+++.|++++.++ +
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 84 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I 84 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence 5799999999999999999999999999985320 01112 24667777888888999999886 8
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+.++.+++.+.+ +. ++.++.+|.+|+|+|.+|...
T Consensus 85 ~~i~~~~~~~~v-~~-----~~~~~~~~~lv~AtG~~~~~~ 119 (320)
T 1trb_A 85 NKVDLQNRPFRL-NG-----DNGEYTCDALIIATGASARYL 119 (320)
T ss_dssp EEEECSSSSEEE-EE-----SSCEEEEEEEEECCCEEECCC
T ss_pred eEEEecCCEEEE-Ee-----CCCEEEcCEEEECCCCCcCCC
Confidence 888776666666 33 456899999999999988654
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6.9e-06 Score=84.49 Aligned_cols=100 Identities=22% Similarity=0.237 Sum_probs=78.8
Q ss_pred CeEEEEcCcHHHHHHHHHHH-hcCCeeEEEcccCccC--------C-------------CC----------------CHH
Q 010573 215 KKLVVIGAGYIGLEMGSVWA-RLGSEVTVVEFAADIV--------P-------------SM----------------DGE 256 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~-~~g~~Vtlv~~~~~~~--------~-------------~~----------------d~~ 256 (507)
.+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+. + .+ .++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 9999999999865331 0 01 235
Q ss_pred HHHHHHHHHHhcCc--EEEcCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeecC--CCCCC
Q 010573 257 IRKQFQRSLEKQKM--KFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAGR--TPFTA 319 (507)
Q Consensus 257 ~~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~~--~v~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~ 319 (507)
+.+.+.+..++.|+ .++++++|++++.+++ .+.+++. +++++.+|.||+|+|. +|...
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~-----~G~~i~ad~lV~AtG~~s~p~~p 152 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTD-----HGEVYRAKYVVNAVGLLSAINFP 152 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEET-----TSCEEEEEEEEECCCSCCSBCCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEc-----CCCEEEeCEEEECCcccccCCCC
Confidence 66777788888898 8999999999987665 6667664 4568999999999994 66544
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-06 Score=85.46 Aligned_cols=99 Identities=17% Similarity=0.330 Sum_probs=73.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCe--eEEEcccCccC---CCCCHHHH---------HHHHHHHHhcCcEEEcCceEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSE--VTVVEFAADIV---PSMDGEIR---------KQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~--Vtlv~~~~~~~---~~~d~~~~---------~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
++++|||+|+.|+.+|..|++.|.+ |+++++.+.+. +.+.+... ....+.+++.|++++.+++++.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 82 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA 82 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence 5899999999999999999999977 99998876531 11221111 1123456678999999999999
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
++..... +++. +++++.+|.+|+|+|.+|....
T Consensus 83 id~~~~~--v~~~-----~g~~~~~d~lvlAtG~~p~~~~ 115 (410)
T 3ef6_A 83 LDVQTRT--ISLD-----DGTTLSADAIVIATGSRARTMA 115 (410)
T ss_dssp EETTTTE--EEET-----TSCEEECSEEEECCCEEECCCC
T ss_pred EECCCCE--EEEC-----CCCEEECCEEEEccCCcccCCC
Confidence 9765543 4443 4568999999999999887643
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.7e-06 Score=84.56 Aligned_cols=35 Identities=34% Similarity=0.430 Sum_probs=32.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
++|+||||||+|+++|..|++.|++|+|+||.+.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 58999999999999999999999999999997644
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.9e-07 Score=89.01 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+.+.+.+.+++.|++++++++|++|+.+++++. +++ +++++.+|.||+|+|....
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~------~g~~~~ad~VV~a~~~~~~ 253 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIA------DDRIHDADLVISNLGHAAT 253 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE------TTEEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEE------CCEEEECCEEEECCCHHHH
Confidence 56778888899999999999999999988877765 544 3568999999999986543
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.2e-06 Score=85.43 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=69.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... . .
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------~-------~-------------------------- 211 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT------Y-------D-------------------------- 211 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT------S-------C--------------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc------c-------C--------------------------
Confidence 468999999999999999999999999999996543210 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+ .+..++...+.+...+|+..++.+|.||+|+|.+|.
T Consensus 212 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~ 269 (458)
T 1lvl_A 212 ----------SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPR 269 (458)
T ss_dssp ----------HHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEEC
T ss_pred ----------HHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcC
Confidence 011122234566678999887 455565444555533454467999999999999885
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=7e-07 Score=89.49 Aligned_cols=96 Identities=22% Similarity=0.308 Sum_probs=70.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccC--CC--------CC-HHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV--PS--------MD-GEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--~~--------~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
.|+|+|||+|+.|+.+|..|++.+ .+||++++++... |. ++ +++...+.+.+++.||+++.+ ++++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~ 80 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES 80 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence 378999999999999999999876 6899999887531 11 11 111112345567789999865 7899
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
|+.+++.+ +++ +++++++|.+|+|+|.++.
T Consensus 81 Id~~~~~V--~~~-----~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 81 IDPDANTV--TTQ-----SGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EETTTTEE--EET-----TCCEEECSEEEECCCCEEE
T ss_pred EECCCCEE--EEC-----CCCEEECCEEEEeCCCCcc
Confidence 97666544 443 5678999999999998764
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=84.74 Aligned_cols=100 Identities=18% Similarity=0.316 Sum_probs=73.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCccC---CCCC----------HHHHHHHHHHHHhcCcEEEcCceE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIV---PSMD----------GEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~---~~~d----------~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+. +.+. .++.....+.+++.|++++.++.|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999997 799999765421 0000 111111235567889999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.++.++. .+++. +++++.+|.+|+|+|.+|....
T Consensus 84 ~~i~~~~~--~v~~~-----~g~~~~~d~lviAtG~~p~~~~ 118 (431)
T 1q1r_A 84 TAINRDRQ--QVILS-----DGRALDYDRLVLATGGRPRPLP 118 (431)
T ss_dssp EEEETTTT--EEEET-----TSCEEECSEEEECCCEEECCCG
T ss_pred EEEECCCC--EEEEC-----CCCEEECCEEEEcCCCCccCCC
Confidence 99976554 34443 4568999999999999987653
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.9e-05 Score=79.54 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=79.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC----C--------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----S-------------------------------------- 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----~-------------------------------------- 252 (507)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 3699999999999999999999999999998654200 0
Q ss_pred ----------CC-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 253 ----------MD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 253 ----------~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
++ ..+.+.+.+.+++.|++++.+++|+++..+++.+. +++.+..+|+..++.+|.||.|+|..+..
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence 00 23556667777778999999999999988777765 66643213334589999999999987754
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-06 Score=87.61 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=42.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (507)
+|...+||+|||+|.+|+++|..|++.|++|+++|+++.+||.|...
T Consensus 16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~ 62 (475)
T 3p1w_A 16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL 62 (475)
T ss_dssp -CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred cccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCcccc
Confidence 45567999999999999999999999999999999999999987643
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1e-05 Score=81.76 Aligned_cols=98 Identities=18% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+... .+
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~-- 209 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-------------------------------------GD-- 209 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-------------------------------------cC--
Confidence 368999999999999999999999999999996543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEcc-C--CceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTI-E--GGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~-~--g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..++ .+.+.+.+. + |+..++.+|.||+|+|.+|.
T Consensus 210 ----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~ 272 (464)
T 2eq6_A 210 ----------PETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR 272 (464)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred ----------HHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence 0112223456677899998873 44443 344556654 5 64458999999999998875
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.7e-07 Score=91.11 Aligned_cols=42 Identities=31% Similarity=0.473 Sum_probs=39.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~ 84 (507)
.+||+|||||++||+||..|++.| ++|+|+|+++++||.+..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t 50 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQT 50 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceee
Confidence 479999999999999999999999 999999999999998643
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.7e-06 Score=86.66 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=75.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC-CC----------C-C-H-HHHHHHHHHHHhcCcEEEcCceE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV-PS----------M-D-G-EIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~-~~----------~-d-~-~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. .. . + . .+........++.|++++++++|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 81 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV 81 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence 5899999999999999999998 78999999887641 10 0 0 0 11112233334579999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
++++.+++.+.+. +..+++..++.+|.+|+|||.+|....
T Consensus 82 ~~id~~~~~v~~~--~~~~g~~~~~~~d~lviAtG~~p~~p~ 121 (565)
T 3ntd_A 82 VAIDRAAKLVTVR--RLLDGSEYQESYDTLLLSPGAAPIVPP 121 (565)
T ss_dssp EEEETTTTEEEEE--ETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EEEECCCCEEEEE--ecCCCCeEEEECCEEEECCCCCCCCCC
Confidence 9998777665554 323345568999999999999887653
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.1e-06 Score=78.41 Aligned_cols=100 Identities=18% Similarity=0.202 Sum_probs=76.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc---c--------CCCC-----CHHHHHHHHHHHHhcCcEEEcCce
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPSM-----DGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------~~~~-----d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
..+++|||+|+.|+.+|..|++.|.+|+++++... + .+.+ .+++...+.+.+++.|++++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~- 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED- 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence 46899999999999999999999999999985311 0 1112 24667777788888999999887
Q ss_pred EEEEEEcCCeEEE-EEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 278 VVGVDLSGDGVKL-TLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 278 v~~i~~~~~~v~v-~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
++.++. ++.+.+ .+. +++++.+|.+|+|+|..|....
T Consensus 93 v~~i~~-~~~~~v~~~~-----~g~~~~~d~lviAtG~~~~~~~ 130 (335)
T 2a87_A 93 VESVSL-HGPLKSVVTA-----DGQTHRARAVILAMGAAARYLQ 130 (335)
T ss_dssp EEEEEC-SSSSEEEEET-----TSCEEEEEEEEECCCEEECCCC
T ss_pred EEEEEe-CCcEEEEEeC-----CCCEEEeCEEEECCCCCccCCC
Confidence 888865 444455 443 4568999999999999886543
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.2e-06 Score=83.19 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=68.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCcc------CCC-C------CHHH-------HHHHHHHHHhcCcE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADI------VPS-M------DGEI-------RKQFQRSLEKQKMK 271 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~------~~~-~------d~~~-------~~~~~~~l~~~Gv~ 271 (507)
.++|+|||+|+.|+.+|..|++. |.+|+++++.+.+ ++. + ..++ ........++.|++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 36899999999999999999998 8999999998763 111 1 0111 11222222357999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
++.++++++++.+++.+.+. +..+++...+.+|.+|+|+|.+|....
T Consensus 83 ~~~~~~V~~id~~~~~v~~~--~~~~g~~~~~~~d~lviAtG~~p~~p~ 129 (472)
T 3iwa_A 83 ALVETRAHAIDRAAHTVEIE--NLRTGERRTLKYDKLVLALGSKANRPP 129 (472)
T ss_dssp EECSEEEEEEETTTTEEEEE--ETTTCCEEEEECSEEEECCCEEECCCS
T ss_pred EEECCEEEEEECCCCEEEEe--ecCCCCEEEEECCEEEEeCCCCcCCCC
Confidence 99999999998777666554 222334458999999999999887643
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.4e-06 Score=85.73 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHH---CCCcEEEEecCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~---~g~~V~lie~~~ 76 (507)
.+||+|||||++|+++|..|++ .|.+|+|||+.+
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~ 38 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 3699999999999999999999 999999999964
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-05 Score=80.27 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=75.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----------------------C--------------C----
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------------------S--------------M---- 253 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------------------~--------------~---- 253 (507)
..|+|||+|..|+-+|..+++.|.+|+++++.+.+.. . +
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 106 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence 4699999999999999999999999999998653210 0 0
Q ss_pred --------------------------CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCe-EEEEEeecCCCceEEEEcC
Q 010573 254 --------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEAD 306 (507)
Q Consensus 254 --------------------------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~~D 306 (507)
...+.+.+.+.+++.||+++++++|+++..++++ +.+++. +++++.+|
T Consensus 107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~-----~G~~i~Ad 181 (447)
T 2i0z_A 107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ-----TGEVLETN 181 (447)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-----TCCEEECS
T ss_pred HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEEC-----CCCEEECC
Confidence 0234455667777889999999999999876666 456653 34479999
Q ss_pred EEEEeecCCC
Q 010573 307 VVLVSAGRTP 316 (507)
Q Consensus 307 ~vi~a~G~~p 316 (507)
.||+|+|..+
T Consensus 182 ~VVlAtGg~s 191 (447)
T 2i0z_A 182 HVVIAVGGKS 191 (447)
T ss_dssp CEEECCCCSS
T ss_pred EEEECCCCCc
Confidence 9999999877
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-06 Score=89.01 Aligned_cols=46 Identities=26% Similarity=0.414 Sum_probs=38.7
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
+....+||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus 12 ~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t 57 (478)
T 2ivd_A 12 PRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGT 57 (478)
T ss_dssp -----CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCE
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeee
Confidence 3445689999999999999999999999999999999999997653
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=6.5e-06 Score=85.98 Aligned_cols=104 Identities=19% Similarity=0.290 Sum_probs=78.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC-----------CCC-C--HHHHHHHHHHHHhcCcEEEcCce
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV-----------PSM-D--GEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~-----------~~~-d--~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
.++|+|||+|+.|+.+|..|++. |.+|+++++.+.+. ..+ + ..+...+....++.|+++++++.
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 115 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSE 115 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEE
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 57899999999999999999998 88999999987631 111 1 11223345556678999999999
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 278 v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
|+++..+++.+.+.. ..+++...+.+|.+|+|+|.+|...
T Consensus 116 V~~id~~~~~v~v~~--~~~g~~~~~~~d~lviAtG~~p~~p 155 (588)
T 3ics_A 116 VVKINKEEKTITIKN--VTTNETYNEAYDVLILSPGAKPIVP 155 (588)
T ss_dssp EEEEETTTTEEEEEE--TTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEECCCCEEEEee--cCCCCEEEEeCCEEEECCCCCCCCC
Confidence 999987777665542 2233445799999999999988764
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-06 Score=85.34 Aligned_cols=42 Identities=33% Similarity=0.488 Sum_probs=39.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
++|++|||||++|+++|..|++.|++|+|+|+++.+||.|..
T Consensus 1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEe
Confidence 379999999999999999999999999999999999998764
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-06 Score=87.92 Aligned_cols=43 Identities=37% Similarity=0.663 Sum_probs=39.5
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
...+||+|||||++|++||+.|++.|++|+|+|+++.+||.+.
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 51 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVW 51 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCcee
Confidence 3468999999999999999999999999999999999999753
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.8e-06 Score=82.38 Aligned_cols=100 Identities=24% Similarity=0.324 Sum_probs=69.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC------CCC------CHHHHHHHHHHH-HhcCcEEEcCceE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV------PSM------DGEIRKQFQRSL-EKQKMKFMLKTKV 278 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~------~~~------d~~~~~~~~~~l-~~~Gv~i~~~~~v 278 (507)
.++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. +.+ ..++.....+.+ ++.|+++++++++
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v 82 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV 82 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence 36899999999999999999998 78999999887541 111 011122222333 5789999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCce-EEEEcCEEEEeecCCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEK-TILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~-~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.++ .+...+... ++ .++.+|.+|+|+|.+|....
T Consensus 83 ~~i~--~~~~~v~~~-----~g~~~~~~d~lviAtG~~p~~p~ 118 (449)
T 3kd9_A 83 IEVD--TGYVRVREN-----GGEKSYEWDYLVFANGASPQVPA 118 (449)
T ss_dssp EEEC--SSEEEEECS-----SSEEEEECSEEEECCCEEECCCS
T ss_pred EEEe--cCCCEEEEC-----CceEEEEcCEEEECCCCCCCCCC
Confidence 9984 334445432 33 58999999999999887543
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.8e-06 Score=84.64 Aligned_cols=100 Identities=19% Similarity=0.327 Sum_probs=76.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--------C-----------------------------CCCHHH
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------P-----------------------------SMDGEI 257 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------~-----------------------------~~d~~~ 257 (507)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. | ...+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 479999999999999999999999999999875421 0 012567
Q ss_pred HHHHHHHHHhcCc--EEEcCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeec--CCCCCC
Q 010573 258 RKQFQRSLEKQKM--KFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAG--RTPFTA 319 (507)
Q Consensus 258 ~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~~--~v~v~~~~~~~g~~~~i~~D~vi~a~G--~~p~~~ 319 (507)
...+.+..++.|+ .++++++|++++.+++ .+.|++. +++++.+|.||+|+| .+|...
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~-----~G~~~~ad~lV~AtG~~s~p~~p 152 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLD-----NEEVVTCRFLISATGPLSASRMP 152 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEET-----TTEEEEEEEEEECCCSCBC---C
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEEC-----CCCEEEeCEEEECcCCCCCCcCC
Confidence 7777777888887 7889999999976543 5566664 567899999999999 666654
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.7e-05 Score=78.04 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=70.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.... .+
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-----~~--------------------------------- 186 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL-----LH--------------------------------- 186 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT-----SC---------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc-----cC---------------------------------
Confidence 4689999999999999999999999999999965432100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+++++.+. +..+ +...+.+.+.+| .++.+|.||+|+|.+|.
T Consensus 187 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vv~a~G~~p~ 244 (384)
T 2v3a_A 187 ----------PAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDG--EVIPCDLVVSAVGLRPR 244 (384)
T ss_dssp ----------HHHHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEEC
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCC--CEEECCEEEECcCCCcC
Confidence 0112223455677899998874 4444 344567777777 67999999999998875
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-05 Score=82.91 Aligned_cols=101 Identities=11% Similarity=0.197 Sum_probs=78.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC--ccC-----------C-CCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA--DIV-----------P-SMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~--~~~-----------~-~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
..+|+|||+|+.|+.+|..+++.|.+|+++++.. .+. + ...+++...+.+.+++.|++++.+++++
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~ 291 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS 291 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 4679999999999999999999999999997531 111 0 1134677778888889999999999999
Q ss_pred EEEEc---CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 280 GVDLS---GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 280 ~i~~~---~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.+..+ ++...+++. ++.++.+|.||+|+|.+|...
T Consensus 292 ~i~~~~~~~~~~~V~~~-----~g~~~~~d~vVlAtG~~~~~~ 329 (521)
T 1hyu_A 292 KLVPAATEGGLHQIETA-----SGAVLKARSIIIATGAKWRNM 329 (521)
T ss_dssp EEECCSSTTSCEEEEET-----TSCEEEEEEEEECCCEEECCC
T ss_pred EEEeccCCCceEEEEEC-----CCCEEEcCEEEECCCCCcCCC
Confidence 99653 225666654 456899999999999887653
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-06 Score=88.31 Aligned_cols=42 Identities=36% Similarity=0.666 Sum_probs=39.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
.+||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~ 46 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT 46 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceec
Confidence 479999999999999999999999999999999999998753
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.7e-06 Score=83.54 Aligned_cols=99 Identities=14% Similarity=0.298 Sum_probs=73.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCcc-C--CCC----------CHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADI-V--PSM----------DGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~-~--~~~----------d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
+++++|||+|+.|+.+|..|++.|. +|+++++.+.. . +.+ ..++.....+.+.+.+++++. +++
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v 79 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRM 79 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCE
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEE
Confidence 3689999999999999999999998 89999987632 1 001 111112234566788999998 999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.++.+... +++. +++++.+|.+++|+|.+|....
T Consensus 80 ~~id~~~~~--v~~~-----~g~~~~~d~lvlAtG~~p~~~~ 114 (404)
T 3fg2_P 80 VSIDREGRK--LLLA-----SGTAIEYGHLVLATGARNRMLD 114 (404)
T ss_dssp EEEETTTTE--EEES-----SSCEEECSEEEECCCEEECCCC
T ss_pred EEEECCCCE--EEEC-----CCCEEECCEEEEeeCCCccCCC
Confidence 999765554 4443 4568999999999999887543
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.6e-06 Score=83.01 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=74.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccC--C-CC---------CHH--HHHHHHHHHHhcCcEEEcCceEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV--P-SM---------DGE--IRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--~-~~---------d~~--~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
+|+|||+|+.|+.+|..+++.| .+|+++++.+... + .+ +.. +....++.+++.|++++.+++++
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~ 81 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI 81 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence 5999999999999999999988 4689998876431 0 00 000 00112344567899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.+......+.+. ...++++.++.+|.+|+|||.+|+...
T Consensus 82 ~id~~~~~~~~~--~~~~~~~~~~~yd~lVIATGs~p~~p~ 120 (437)
T 4eqs_A 82 AINDERQTVSVL--NRKTNEQFEESYDKLILSPGASANSLG 120 (437)
T ss_dssp EEETTTTEEEEE--ETTTTEEEEEECSEEEECCCEEECCCC
T ss_pred EEEccCcEEEEE--eccCCceEEEEcCEEEECCCCcccccc
Confidence 997666555544 334556778999999999999997654
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=75.80 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=68.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc---C---C------CC-CHHHHHHHHHHHHhcC-cEEEcCceEEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI---V---P------SM-DGEIRKQFQRSLEKQK-MKFMLKTKVVGV 281 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~---~---~------~~-d~~~~~~~~~~l~~~G-v~i~~~~~v~~i 281 (507)
.|+|||+|+.|+.+|..+++.|.+|+++++...- . + .. .+++.+...+.+.+.+ +.++ ...+..+
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 86 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYY-EKTVVMI 86 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEE-ECCEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEE-eeEEEEe
Confidence 5899999999999999999999999999875321 0 1 11 2455555555555554 5554 4445555
Q ss_pred EE-cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 282 DL-SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 282 ~~-~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.. +.+...+.+. +++++.+|.||+|||.+|....
T Consensus 87 ~~~~~~~~~v~~~-----~g~~~~a~~liiATGs~p~~p~ 121 (304)
T 4fk1_A 87 TKQSTGLFEIVTK-----DHTKYLAERVLLATGMQEEFPS 121 (304)
T ss_dssp EECTTSCEEEEET-----TCCEEEEEEEEECCCCEEECCS
T ss_pred eecCCCcEEEEEC-----CCCEEEeCEEEEccCCcccccc
Confidence 44 3444556554 5678999999999999887654
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.2e-05 Score=78.35 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=78.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--------C----------C------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------P----------S------------------------ 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------~----------~------------------------ 252 (507)
.+|+|||+|..|+-+|..|++.|.+|+++++.+... + .
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 479999999999999999999999999999875110 0 0
Q ss_pred --------------------CC-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEE
Q 010573 253 --------------------MD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLV 310 (507)
Q Consensus 253 --------------------~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~ 310 (507)
++ ..+.+.+.+.+++.|++++.+++|+++..+++.+. +.+.. .+|+..++.+|.||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~-~dG~~~~i~ad~VI~ 166 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRN-TEGVELMAHARFIVD 166 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEEC-SSSCEEEEEEEEEEE
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEe-CCCCEEEEEcCEEEE
Confidence 00 23445566777778999999999999988877654 55442 233335899999999
Q ss_pred eecCCCCC
Q 010573 311 SAGRTPFT 318 (507)
Q Consensus 311 a~G~~p~~ 318 (507)
|+|.....
T Consensus 167 AdG~~S~v 174 (512)
T 3e1t_A 167 ASGNRTRV 174 (512)
T ss_dssp CCCTTCSS
T ss_pred CCCcchHH
Confidence 99987643
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-06 Score=84.65 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=70.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccC-CCCCHHHH---------HHHHHHHHhcCcEEEcCceEEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV-PSMDGEIR---------KQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~-~~~d~~~~---------~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+|+|+|||+|+.|+.+|..|++.+ .+|+++++.+... ......+. ..-.+.+.+.||+++. .+++.+
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~-~~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVH-DSALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEEC-SCEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEE-eEEEEE
Confidence 689999999999999999998876 5899999877532 11111110 0112345568999985 478888
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.+.+.+. +. ++.++.+|.+++|+|.+|+...
T Consensus 81 d~~~~~v~--~~-----~g~~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 81 DPDKKLVK--TA-----GGAEFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp ETTTTEEE--ET-----TSCEEECSEEEECCCEEECGGG
T ss_pred EccCcEEE--ec-----ccceeecceeeeccCCccccCC
Confidence 76555433 32 5678999999999999887643
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.7e-05 Score=78.76 Aligned_cols=98 Identities=20% Similarity=0.335 Sum_probs=75.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-----C----------------------------------C
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----M----------------------------------D 254 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----~----------------------------------d 254 (507)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+. + .
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~g 102 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCCC
Confidence 458999999999999999999999999999987643100 0 0
Q ss_pred ------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEE
Q 010573 255 ------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310 (507)
Q Consensus 255 ------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~ 310 (507)
..+.+.+.+.+.+ ++++++++|++++.+++++.+++. +++++.+|.||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~a~~vV~ 175 (407)
T 3rp8_A 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFT-----DGSSASGDLLIA 175 (407)
T ss_dssp CEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEET-----TSCEEEESEEEE
T ss_pred CEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEc-----CCCEEeeCEEEE
Confidence 1233444444444 789999999999988888888875 456899999999
Q ss_pred eecCCCCC
Q 010573 311 SAGRTPFT 318 (507)
Q Consensus 311 a~G~~p~~ 318 (507)
|.|.....
T Consensus 176 AdG~~S~v 183 (407)
T 3rp8_A 176 ADGSHSAL 183 (407)
T ss_dssp CCCTTCSS
T ss_pred CCCcChHH
Confidence 99987654
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.7e-06 Score=86.54 Aligned_cols=44 Identities=30% Similarity=0.423 Sum_probs=40.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~~GG~~~~ 84 (507)
...+||+|||||++|++||++|++.| .+|+|+|+++.+||.+..
T Consensus 7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCE
T ss_pred ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeee
Confidence 34689999999999999999999998 799999999999998764
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-06 Score=87.91 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.+.+.+.+.+++.|++++++++|++|+.++++ +.|+. ++.++.+|.||+|++..
T Consensus 235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~------~~~~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL------RDSSLEADHVISAIPAS 289 (477)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC------SSCEEEESEEEECSCHH
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE------CCeEEEcCEEEECCCHH
Confidence 67778888888999999999999999877665 66653 23479999999999753
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-05 Score=80.69 Aligned_cols=98 Identities=23% Similarity=0.318 Sum_probs=68.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+.. . .+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------~----------------------------~~-- 210 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS---------G----------------------------FE-- 210 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST---------T----------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc---------c----------------------------cC--
Confidence 46899999999999999999999999999999654311 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEcc-CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTI-EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~-~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..++ .+.+.+.+. +|+..++.+|.||+|+|.+|.
T Consensus 211 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 211 ----------KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 0112223455677899998874 44443 334555543 333478999999999998875
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.5e-06 Score=83.06 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=76.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC--C---------CC---CH-HHHHHHHHHHHhcCcEEEcCceE
Q 010573 216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--P---------SM---DG-EIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~--~---------~~---d~-~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
+++|||+|+.|+.+|..+++. |.+|+++++.+.+. + .. ++ ++.....+.+++.|++++.++.+
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 81 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV 81 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence 689999999999999999998 99999999887521 0 10 11 11112345667789999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.++.+++.+.+. +..++++.++.+|.+|+|+|.+|....
T Consensus 82 ~~i~~~~~~v~v~--~~~~g~~~~~~~d~lviAtGs~p~~p~ 121 (452)
T 2cdu_A 82 TNVDPETKTIKVK--DLITNEEKTEAYDKLIMTTGSKPTVPP 121 (452)
T ss_dssp EEEEGGGTEEEEE--ETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EEEEcCCCEEEEE--ecCCCceEEEECCEEEEccCCCcCCCC
Confidence 9997666655544 222334678999999999999887653
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2e-05 Score=75.11 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=74.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc----------------CCCC-----CHHHHHHHHHHHHhcCcEEEc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI----------------VPSM-----DGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~----------------~~~~-----d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
.|+|||+|+.|+.+|..+++.|.+|+++++.+.. .+.+ .+++...+.+.+++.++++..
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT 85 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence 5999999999999999999999999999875421 0111 146777788888889999875
Q ss_pred CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 275 ~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
. .+.......+...+... ++.++.+|.+|+|||.+|....
T Consensus 86 ~-~v~~~~~~~~~~~~~~~-----~~~~~~~~~liiATG~~~~~~~ 125 (314)
T 4a5l_A 86 E-TIDHVDFSTQPFKLFTE-----EGKEVLTKSVIIATGATAKRMH 125 (314)
T ss_dssp C-CEEEEECSSSSEEEEET-----TCCEEEEEEEEECCCEEECCCC
T ss_pred e-EEEEeecCCCceEEEEC-----CCeEEEEeEEEEcccccccccC
Confidence 4 45555555555555543 5678999999999999887644
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.4e-06 Score=87.59 Aligned_cols=43 Identities=40% Similarity=0.529 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
...+||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~ 53 (504)
T 1sez_A 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLR 53 (504)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCcee
Confidence 3458999999999999999999999999999999999999764
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=80.60 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+.... +
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------------------------------------~-- 223 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASM-------------------------------------D-- 223 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSS-------------------------------------C--
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccccc-------------------------------------C--
Confidence 4689999999999999999999999999999965432110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec----CCEEEEEcc---CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS----PSEVSVDTI---EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d----~~~~~v~~~---~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..++ .+.+.+.+. +|+...+.+|.||+|+|.+|.
T Consensus 224 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 288 (478)
T 1v59_A 224 ----------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288 (478)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence 0112223456677899998874 44443 334555544 333478999999999998875
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.3e-06 Score=87.47 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 255 GEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 255 ~~~~~~~~~~l~~~G-v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
..+.+.+.+.+.+.| ++++++++|++|+.+++++.+++. +++++.+|.||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~-----~g~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTAR-----DGREFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEET-----TCCEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEEC-----CCCEEEcCEEEECCCHH
Confidence 467777888888888 999999999999887777877764 44579999999999954
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=78.13 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=76.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-----CC-C-------------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-----VP-S------------------------------------- 252 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-----~~-~------------------------------------- 252 (507)
+|+|||+|+.|+.+|..|++.|.+|+++++.+.. .. .
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR 83 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCce
Confidence 6999999999999999999999999999987631 00 0
Q ss_pred ----------------CC-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 253 ----------------MD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 253 ----------------~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
++ .++.+.+.+.+.+.|+++++++++++++.++ +.+.+++.. +|+..++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~--~g~~~~~~a~~vV~AdG~ 161 (394)
T 1k0i_A 84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFER--DGERLRLDCDYIAGCDGF 161 (394)
T ss_dssp EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEE--TTEEEEEECSEEEECCCT
T ss_pred EEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEec--CCcEEEEEeCEEEECCCC
Confidence 01 2344556666777899999999999998653 456777632 222237999999999998
Q ss_pred CCCC
Q 010573 315 TPFT 318 (507)
Q Consensus 315 ~p~~ 318 (507)
....
T Consensus 162 ~S~v 165 (394)
T 1k0i_A 162 HGIS 165 (394)
T ss_dssp TCST
T ss_pred CcHH
Confidence 8765
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.1e-06 Score=83.33 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=39.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
++|++|||||++|+++|..|++.|++|+|+|+++.+||.|..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~ 44 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYD 44 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCcccc
Confidence 379999999999999999999999999999999999998743
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.4e-06 Score=88.26 Aligned_cols=42 Identities=33% Similarity=0.461 Sum_probs=38.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC------CcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g------~~V~lie~~~~~GG~~~~ 84 (507)
++||+|||||++|++||++|++.| ++|+|+|+++.+||.+..
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s 52 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQT 52 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEE
Confidence 479999999999999999999999 999999999999987543
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.3e-06 Score=84.57 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=37.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCC---CCCceeccccccch
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG---ALGGTCLNVGCIPS 90 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~---~~GG~~~~~~~~p~ 90 (507)
+||+||||||+|+++|+.|++.|++|+|||+.. ..+|.+....|.+.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~ 72 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNA 72 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccc
Confidence 799999999999999999999999999999965 22344444455443
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.7e-06 Score=83.09 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCe--eEEEcccCccC------C--CC-----CHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSE--VTVVEFAADIV------P--SM-----DGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~--Vtlv~~~~~~~------~--~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..+|+|||+|+.|+.+|..|++.|.+ |+++++.+.+. . .+ ..++.....+.+++.|++++.++++
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 88 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV 88 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence 36899999999999999999999987 99998876421 0 00 1122222356667889999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.+...... +.+. +++.+.+|.+|+|+|.+|....
T Consensus 89 ~~id~~~~~--v~~~-----~g~~~~~d~lvlAtG~~~~~~~ 123 (415)
T 3lxd_A 89 VSLDPAAHT--VKLG-----DGSAIEYGKLIWATGGDPRRLS 123 (415)
T ss_dssp EEEETTTTE--EEET-----TSCEEEEEEEEECCCEECCCCB
T ss_pred EEEECCCCE--EEEC-----CCCEEEeeEEEEccCCccCCCC
Confidence 999765543 4443 4568999999999999887643
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3.4e-06 Score=84.50 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+.+.+.+.+++.|++++++++|++|..+++++..... +++++.+|.||+++|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-----~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-----EGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-----TTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-----CCeEEECCEEEECCCCCcc
Confidence 477888888888999999999999999887777663332 4578999999999998874
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=81.25 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=69.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... ++
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~-- 207 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-------------------------------------FD-- 207 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-------------------------------------hh--
Confidence 468999999999999999999999999999986443110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecC---CEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~---~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+++++.+. +..+.. ..+.+.+.+| ..+.+|.||+|+|.+|..
T Consensus 208 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g--~~i~~D~vv~a~G~~p~~ 267 (450)
T 1ges_A 208 ----------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG--RSETVDCLIWAIGREPAN 267 (450)
T ss_dssp ----------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEESC
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCC--cEEEcCEEEECCCCCcCC
Confidence 0011223445666789988873 444432 2366777777 579999999999998853
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.5e-05 Score=80.66 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=75.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC-----CeeEEEcccCccC-------C--C-----------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG-----SEVTVVEFAADIV-------P--S----------------------------- 252 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g-----~~Vtlv~~~~~~~-------~--~----------------------------- 252 (507)
+|+|||+|+.|+.+|..|++.| .+|+++++.+.+. + .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 6999999999999999999999 8999999877421 0 0
Q ss_pred -------------CCHHHHHHHHHHHHhcCcEEEcCceEEEEEEc---CCe--EEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 253 -------------MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLS---GDG--VKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 253 -------------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~---~~~--v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
...++.+.+....++.+++++++++|++++.+ ++. +.+++.+.. +...++.+|.||+|+|.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~-g~~~~~~~d~lVlAtG~ 190 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNAD-GEELVRTTRALVVSPGG 190 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETT-SCEEEEEESEEEECCCC
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCC-CceEEEEeCEEEECCCC
Confidence 01234444555556668999999999999765 332 355554321 23348999999999999
Q ss_pred CCCCC
Q 010573 315 TPFTA 319 (507)
Q Consensus 315 ~p~~~ 319 (507)
.|..+
T Consensus 191 ~p~~p 195 (463)
T 3s5w_A 191 TPRIP 195 (463)
T ss_dssp EECCC
T ss_pred CCCCc
Confidence 88754
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3e-06 Score=86.67 Aligned_cols=47 Identities=30% Similarity=0.439 Sum_probs=41.4
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
++++...+||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus 27 ~~~~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 27 LKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVR 73 (498)
T ss_dssp SCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCC
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcee
Confidence 33445568999999999999999999999999999999999999764
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.1e-05 Score=74.92 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=71.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc---c--------CCCC----CHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD---I--------VPSM----DGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~--------~~~~----d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
.|+|||+|+.|+.+|..+++.|.+|+++++... . .|.+ .+++.........+.+..+..+.....
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 589999999999999999999999999987531 0 1111 246666677777788888887766655
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
..... ...+. . +++++.+|.+|+|||.+|....
T Consensus 88 ~~~~~-~~~~~-~-----~~~~~~~d~liiAtGs~~~~~~ 120 (312)
T 4gcm_A 88 EDKGE-YKVIN-F-----GNKELTAKAVIIATGAEYKKIG 120 (312)
T ss_dssp EECSS-CEEEE-C-----SSCEEEEEEEEECCCEEECCCC
T ss_pred eeeec-ceeec-c-----CCeEEEeceeEEcccCccCcCC
Confidence 54322 22222 1 4578999999999999887643
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.01 E-value=6e-05 Score=78.26 Aligned_cols=102 Identities=30% Similarity=0.369 Sum_probs=78.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC------------------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------ 251 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------ 251 (507)
..+|+|||||+.|+-+|..|++.|.+|+++++.+....
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 46899999999999999999999999999998731100
Q ss_pred ---------------------CCC-HHHHHHHHHHHHhcCcEEEcCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEE
Q 010573 252 ---------------------SMD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVV 308 (507)
Q Consensus 252 ---------------------~~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~g~~~~i~~D~v 308 (507)
.++ ..+...+.+.+++.|++++.+++|++++.+ ++.+.+++.+ +|...++.+|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~--~G~~~~i~AdlV 180 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRR--GGESVTVESDFV 180 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEE--TTEEEEEEESEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEec--CCceEEEEcCEE
Confidence 011 245566777778899999999999999865 4566677653 233368999999
Q ss_pred EEeecCCCC
Q 010573 309 LVSAGRTPF 317 (507)
Q Consensus 309 i~a~G~~p~ 317 (507)
|.|+|....
T Consensus 181 V~AdG~~S~ 189 (591)
T 3i3l_A 181 IDAGGSGGP 189 (591)
T ss_dssp EECCGGGCH
T ss_pred EECCCCcch
Confidence 999998663
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=80.26 Aligned_cols=104 Identities=20% Similarity=0.316 Sum_probs=75.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC--C---------CC-C-HHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--P---------SM-D-GEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~--~---------~~-d-~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
++++|||+|+.|+.+|..+++. |.+|+++++.+.+. + .. + .++.....+.+++.|++++.++.++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 80 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 3699999999999999999998 89999999877531 1 00 1 1122223456677899999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
.+..+++.+.+. +..+|+..++.+|.+|+|+|.+|....
T Consensus 81 ~i~~~~~~v~~~--~~~~g~~~~~~~d~lviAtG~~p~~p~ 119 (447)
T 1nhp_A 81 AIQPKEHQVTVK--DLVSGEERVENYDKLIISPGAVPFELD 119 (447)
T ss_dssp EEETTTTEEEEE--ETTTCCEEEEECSEEEECCCEEECCCC
T ss_pred EEeCCCCEEEEE--ecCCCceEEEeCCEEEEcCCCCcCCCC
Confidence 997666655544 212233346999999999999987653
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.9e-05 Score=79.85 Aligned_cols=98 Identities=23% Similarity=0.312 Sum_probs=68.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+. |. ++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------~~----------------------------~~-- 211 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL---------PN----------------------------ED-- 211 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS---------TT----------------------------SC--
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc---------cc----------------------------cC--
Confidence 4689999999999999999999999999999865431 10 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEcc-CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTI-EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~-~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+ .+..+. ...+.+.+. +|+..++.+|.||+|+|.+|.
T Consensus 212 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 272 (464)
T 2a8x_A 212 ----------ADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN 272 (464)
T ss_dssp ----------HHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence 011122345566778999887 444443 233555554 555578999999999999885
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.01 E-value=4e-05 Score=78.98 Aligned_cols=100 Identities=23% Similarity=0.312 Sum_probs=79.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--------------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------------------------------------------- 250 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------------------------------------- 250 (507)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+...
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 479999999999999999999999999999875320
Q ss_pred -------------------------C----CCC-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCC----eEEEEEeecC
Q 010573 251 -------------------------P----SMD-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD----GVKLTLEPAA 296 (507)
Q Consensus 251 -------------------------~----~~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~----~v~v~~~~~~ 296 (507)
+ .++ ..+...+.+.+++.|+++++++++++++.+++ ++.+++.+..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~ 165 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD 165 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence 0 001 24556677777788999999999999998888 8888876421
Q ss_pred CCceEEEEcCEEEEeecCCC
Q 010573 297 GGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 297 ~g~~~~i~~D~vi~a~G~~p 316 (507)
...++.+|.||.|.|...
T Consensus 166 --~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 166 --GEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp --EEEEEEEEEEEECCCTTC
T ss_pred --CeEEEEeCEEEECCCCcc
Confidence 136899999999999764
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-05 Score=78.73 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=69.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... ++
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-------------------------------------~~-- 206 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-------------------------------------FD-- 206 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-------------------------------------cC--
Confidence 358999999999999999999999999999985432100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+|+++.+. +..++ .+.+.+.+.+|+. ++.+|.||+|+|.+|..
T Consensus 207 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~-~i~~D~vv~a~G~~p~~ 266 (463)
T 2r9z_A 207 ----------PLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTR-LEGFDSVIWAVGRAPNT 266 (463)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCE-EEEESEEEECSCEEESC
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcE-EEEcCEEEECCCCCcCC
Confidence 0011223455677899998874 44443 3456777777732 79999999999998853
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-06 Score=85.91 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=38.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~ 84 (507)
++||+|||||++|+++|++|++.| ++|+|+|+++.+||.+..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~ 47 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT 47 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence 479999999999999999999999 999999999999987654
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=5e-05 Score=75.42 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=76.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCe-eEEEcccCccCCC-----CC----------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVPS-----MD---------------------------------- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~-----~d---------------------------------- 254 (507)
.+|+|||+|+.|+-+|..|++.|.+ |+++++.+.+.+. +.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g~ 84 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 84 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCCC
Confidence 4799999999999999999999999 9999987643110 00
Q ss_pred ----------------------HHHHHHHHHHHHh-cC-cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEE
Q 010573 255 ----------------------GEIRKQFQRSLEK-QK-MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310 (507)
Q Consensus 255 ----------------------~~~~~~~~~~l~~-~G-v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~ 310 (507)
..+.+.+.+.+++ .| ++++++++|++++. ++++.+++.+..+|+..++.+|.||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~ 163 (410)
T 3c96_A 85 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVG 163 (410)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEE
T ss_pred EEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEE
Confidence 1334455566655 35 68999999999987 66777877642223336899999999
Q ss_pred eecCCCCC
Q 010573 311 SAGRTPFT 318 (507)
Q Consensus 311 a~G~~p~~ 318 (507)
|.|.....
T Consensus 164 AdG~~S~v 171 (410)
T 3c96_A 164 ADGIHSAV 171 (410)
T ss_dssp CCCTTCHH
T ss_pred CCCccchh
Confidence 99987654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.00 E-value=6.7e-05 Score=76.39 Aligned_cols=97 Identities=19% Similarity=0.217 Sum_probs=67.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+.... .
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------------d-------------------------- 214 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQ-------------D-------------------------- 214 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCC-------------C--------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccC-------------C--------------------------
Confidence 4689999999999999999999999999999965432100 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEcc--CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTI--EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~--~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++. |+++.+. +..+ +.+.+.+.+. +|+..++.+|.||+|+|.+|.
T Consensus 215 ----------~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 215 ----------EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp ----------HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred ----------HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 01112223445555 8887663 4333 3344556554 565578999999999999885
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.5e-06 Score=80.62 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=71.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCccC---CCCCHHHHHH-H-H----HHHHhcCcEEEcCceEEEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIV---PSMDGEIRKQ-F-Q----RSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~---~~~d~~~~~~-~-~----~~l~~~Gv~i~~~~~v~~i~ 282 (507)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+. +.+.+.+... . . +.+++.|++++.+++++.++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 86 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 86 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence 4679999999999999999999997 499999877531 1122222110 0 0 03456799999999999997
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.++.. +++. +++++.+|.+|+|+|.+|...
T Consensus 87 ~~~~~--v~~~-----~g~~~~~d~lviAtG~~~~~~ 116 (408)
T 2gqw_A 87 PQAHT--VALS-----DGRTLPYGTLVLATGAAPRAL 116 (408)
T ss_dssp TTTTE--EEET-----TSCEEECSEEEECCCEEECCC
T ss_pred CCCCE--EEEC-----CCCEEECCEEEECCCCCCCCC
Confidence 55443 4443 456899999999999988764
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.5e-05 Score=79.71 Aligned_cols=98 Identities=15% Similarity=0.170 Sum_probs=69.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+... ++
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~d-- 216 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-------------------------------------FD-- 216 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-------------------------------------SC--
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-------------------------------------cc--
Confidence 468999999999999999999999999999986543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecC---CEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~---~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.+|+++.+. +..++. ..+.+.+.+|+. .+.+|.||+|+|.+|..
T Consensus 217 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~-~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 217 ----------ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRI-YEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCE-EEEESEEEECCCBCCTT
T ss_pred ----------hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcE-EEECCEEEECCCCCcCC
Confidence 0112223456777899998874 444432 236677777732 38999999999998853
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.6e-05 Score=77.04 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=80.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC------------------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------------------ 251 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------------------ 251 (507)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 91 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF 91 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence 35799999999999999999999999999997643310
Q ss_pred -----CC-------CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 252 -----SM-------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 252 -----~~-------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.. ...+.+.+.+.+++.|+++++++++++++.+++++.+++.+. +| ..++.+|.||.|.|....
T Consensus 92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~-~g-~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGP-DG-PRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECS-SC-EEEEEEEEEEECCCTTCH
T ss_pred ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcC-CC-cEEEEeCEEEEccCcccH
Confidence 00 024556667777778999999999999998888888887642 12 347999999999998753
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.9e-05 Score=76.90 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=79.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC------------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------------------------------------------ 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------------------------------------------ 252 (507)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 12 ~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 91 (500)
T 2qa1_A 12 AAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFG 91 (500)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEGG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecccc
Confidence 46999999999999999999999999999976532100
Q ss_pred -CC-----------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 253 -MD-----------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 253 -~d-----------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.+ ..+.+.+.+.+++.|+++++++++++++.+++++.+++.+.. | ..++.+|.||.|.|....
T Consensus 92 ~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~-g-~~~~~a~~vVgADG~~S~ 166 (500)
T 2qa1_A 92 VLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPE-G-KHTLRAAYLVGCDGGRSS 166 (500)
T ss_dssp GSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETT-E-EEEEEESEEEECCCTTCH
T ss_pred cCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCC-C-CEEEEeCEEEECCCcchH
Confidence 00 234556667777789999999999999988888888876421 2 247999999999998753
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.6e-05 Score=78.87 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..+++.|.+|+|+++...+.+ .|
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~--------------------------------------~D-- 262 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG--------------------------------------FD-- 262 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT--------------------------------------SC--
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc--------------------------------------cc--
Confidence 46899999999999999999999999999987432211 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEE--ecCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKF--ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~--~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+...+++.+++++.+. +.. .....+.+.+.++ ..+.+|.|++|+|-+|.
T Consensus 263 ----------~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~--~~~~~D~vLvAvGR~Pn 320 (542)
T 4b1b_A 263 ----------QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDK--TSELYDTVLYAIGRKGD 320 (542)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEES
T ss_pred ----------hhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCC--CeEEEEEEEEcccccCC
Confidence 1122334566778899998874 322 3456677777776 56789999999999885
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.6e-06 Score=80.39 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
..++||+|||||++|+++|++|++.|++|+|||++.
T Consensus 4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 456899999999999999999999999999999965
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.8e-05 Score=80.57 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=79.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-------------------------------------C-----C
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-------------------------------------P-----S 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-------------------------------------~-----~ 252 (507)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... . .
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 469999999999999999999999999999754311 0 0
Q ss_pred ---------------C-CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCce-EEEEcCEEEEeecCC
Q 010573 253 ---------------M-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK-TILEADVVLVSAGRT 315 (507)
Q Consensus 253 ---------------~-d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~-~~i~~D~vi~a~G~~ 315 (507)
+ ...+.+.+.+.+++.|++++.+++|++++.+++++.+++... ++ +++.+|.||.|.|..
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~---~G~~~~~a~~vV~ADG~~ 206 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGP---SGPYPVRARYGVGCDGGR 206 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEET---TEEEEEEESEEEECSCSS
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeC---CCcEEEEeCEEEEcCCCC
Confidence 0 134566677777778999999999999988888888887431 44 689999999999987
Q ss_pred CC
Q 010573 316 PF 317 (507)
Q Consensus 316 p~ 317 (507)
..
T Consensus 207 S~ 208 (570)
T 3fmw_A 207 ST 208 (570)
T ss_dssp CH
T ss_pred ch
Confidence 53
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=5.7e-05 Score=78.44 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=76.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC---------------------------------------CC-
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------------------------------------MD- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---------------------------------------~d- 254 (507)
..|+|||+|..|+.+|..+++.|.+|+++++.+.+... .+
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 206 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 57999999999999999999999999999987643210 00
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcC-
Q 010573 255 ------------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG- 285 (507)
Q Consensus 255 ------------------------------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~- 285 (507)
..+...+.+.+++.||+++++++++++..++
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 286 (571)
T 1y0p_A 207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK 286 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence 2334456667778899999999999998765
Q ss_pred CeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 286 DGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 286 ~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+.+. +.+.+ .++...++.+|.||+|+|....
T Consensus 287 g~v~Gv~~~~-~~g~~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 287 GTVKGILVKG-MYKGYYWVKADAVILATGGFAK 318 (571)
T ss_dssp SCEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred CeEEEEEEEe-CCCcEEEEECCeEEEeCCCccc
Confidence 5543 55443 1333347999999999997553
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3e-05 Score=78.66 Aligned_cols=99 Identities=19% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... . ++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~----------------------------~~-- 219 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV--------G----------------------------ID-- 219 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS--------S----------------------------CC--
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc--------c----------------------------cC--
Confidence 368999999999999999999999999999996543110 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCE-EEEEcc---CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSE-VSVDTI---EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~-~~v~~~---~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.||+++.+. +..+. .+. +.+.+. +++..++.+|.||+|+|.+|.
T Consensus 220 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~ 283 (474)
T 1zmd_A 220 ----------MEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPF 283 (474)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence 0112223456677899998874 44443 222 555431 222378999999999999875
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.1e-05 Score=78.38 Aligned_cols=98 Identities=23% Similarity=0.311 Sum_probs=67.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+... ++
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~d-- 214 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-------------------------------------LD-- 214 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-------------------------------------CC--
Confidence 468999999999999999999999999999986543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEe-EEEEec--CCEEEEEcc--CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKG-YGKFIS--PSEVSVDTI--EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~d--~~~~~v~~~--~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+ ++.+|+++.+ .+..+. .+.+.+.+. +|+..++.+|.||+|+|.+|.
T Consensus 215 ----------~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~ 277 (468)
T 2qae_A 215 ----------EDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF 277 (468)
T ss_dssp ----------HHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred ----------HHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence 01122234556 7789999887 444443 223555554 554467999999999998885
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=80.06 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+... .+
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------------~~-- 217 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-------------------------------------MD-- 217 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-------------------------------------cc--
Confidence 468999999999999999999999999999996543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCC--EEEEEcc---CCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPS--EVSVDTI---EGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~--~~~v~~~---~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..++.+ .+.+.+. +|+..++.+|.||+|+|.+|.
T Consensus 218 ----------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 280 (470)
T 1dxl_A 218 ----------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF 280 (470)
T ss_dssp ----------HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred ----------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence 0112223456677899998874 5555432 3555543 444478999999999998875
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.6e-05 Score=77.20 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=72.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----C--C-C---HHHH------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----S--M-D---GEIR------------------------ 258 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----~--~-d---~~~~------------------------ 258 (507)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . + . .++.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 46899999999999999999999999999998764311 0 0 0 0000
Q ss_pred ----------------------HHHHHHHHh--cCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 259 ----------------------KQFQRSLEK--QKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 259 ----------------------~~~~~~l~~--~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
..+.+.|.+ .+++++++++|++++.+++++.+++. +++++.+|.||.|.|.
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~ad~vV~AdG~ 180 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFE-----NKPSETADLVILANGG 180 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEET-----TSCCEEESEEEECSCT
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEEC-----CCcEEecCEEEECCCc
Confidence 011222221 13578889999999888778888775 4457999999999998
Q ss_pred CCCCC
Q 010573 315 TPFTA 319 (507)
Q Consensus 315 ~p~~~ 319 (507)
.....
T Consensus 181 ~S~vR 185 (398)
T 2xdo_A 181 MSKVR 185 (398)
T ss_dssp TCSCC
T ss_pred chhHH
Confidence 87653
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.9e-05 Score=75.13 Aligned_cols=95 Identities=14% Similarity=0.195 Sum_probs=69.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHh---cCCeeEEEcccCccCC--------------------C---CCH---HHH-------
Q 010573 215 KKLVVIGAGYIGLEMGSVWAR---LGSEVTVVEFAADIVP--------------------S---MDG---EIR------- 258 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~~~~~--------------------~---~d~---~~~------- 258 (507)
.+|+|||+|..|+-+|..|++ .|.+|+++++.+.+.. . .+. ...
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~ 81 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL 81 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence 369999999999999999999 9999999997643210 0 000 111
Q ss_pred -------------------------------HHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCE
Q 010573 259 -------------------------------KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307 (507)
Q Consensus 259 -------------------------------~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~ 307 (507)
..++...++.|++++++++|++++.+++++.+++. +++++.+|.
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~-----~g~~~~ad~ 156 (342)
T 3qj4_A 82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQ-----TGSPEQFDL 156 (342)
T ss_dssp HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEES-----SSCCEEESE
T ss_pred hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEEC-----CCCEEEcCE
Confidence 11122233348999999999999988888887764 345689999
Q ss_pred EEEeecC
Q 010573 308 VLVSAGR 314 (507)
Q Consensus 308 vi~a~G~ 314 (507)
||+|+..
T Consensus 157 vV~A~p~ 163 (342)
T 3qj4_A 157 IVLTMPV 163 (342)
T ss_dssp EEECSCH
T ss_pred EEECCCH
Confidence 9999874
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.4e-05 Score=79.19 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=69.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+... .+
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-------------------------------------~~--- 254 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-------------------------------------KD--- 254 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-------------------------------------CS---
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-------------------------------------cc---
Confidence 68999999999999999999999999999996532110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC--CE----EEEEccCCceE-EEEeCeEEEccCCCCCC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--SE----VSVDTIEGGNT-VVKGKNIIIATGSDVKS 190 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~--~~----~~v~~~~g~~~-~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.||+++.+ .+..+.. +. +.+.+.+| . ++.+|.||+|+|.+|..
T Consensus 255 ---------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G--~~~i~aD~Vv~A~G~~p~~ 318 (523)
T 1mo9_A 255 ---------NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNG--EMRIETDFVFLGLGEQPRS 318 (523)
T ss_dssp ---------HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTE--EEEEECSCEEECCCCEECC
T ss_pred ---------HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCC--cEEEEcCEEEECcCCccCC
Confidence 011222345667789999877 4444432 33 56777676 4 89999999999998853
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=97.94 E-value=5e-05 Score=78.57 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=73.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc-cC-----------------------CC------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-IV-----------------------PS------------------ 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~~-----------------------~~------------------ 252 (507)
-.|+|||+|..|+++|..+++.|.+|+++++.+. +. ..
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 4799999999999999999999999999997631 10 00
Q ss_pred ------------CC-HHHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeE-EEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 253 ------------MD-GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGV-KLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 253 ------------~d-~~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.| ..+...+.+.+++ .|++++ +..|+.+..+++.+ .|.+. ++.++.+|.||+|+|..+.
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~-----dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQ-----MGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEET-----TSEEEEEEEEEECCSTTTC
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEEC-----CCCEEECCEEEEcCCCCcc
Confidence 01 1344556677777 699995 67899998766655 35543 4568999999999998764
Q ss_pred C
Q 010573 318 T 318 (507)
Q Consensus 318 ~ 318 (507)
.
T Consensus 183 ~ 183 (651)
T 3ces_A 183 G 183 (651)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.3e-05 Score=77.79 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=73.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc-cC-----------------------CC-----------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD-IV-----------------------PS----------------- 252 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~-~~-----------------------~~----------------- 252 (507)
.-.|+|||+|..|+++|..+++.|.+|+++++.+. +. ..
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~ 100 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN 100 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence 45799999999999999999999999999997641 10 00
Q ss_pred -------------CCH-HHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 253 -------------MDG-EIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 253 -------------~d~-~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.|. .+...+.+.+++ .|++++ +..|+.+..+++.+. |.+. ++.++.+|.||+|+|..+
T Consensus 101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~-----~G~~i~Ad~VVLATG~~s 174 (641)
T 3cp8_A 101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVR-----SGRAIQAKAAILACGTFL 174 (641)
T ss_dssp SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEET-----TSCEEEEEEEEECCTTCB
T ss_pred cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEEC-----CCcEEEeCEEEECcCCCC
Confidence 011 344556667776 499996 458888877777765 6543 446899999999999875
Q ss_pred C
Q 010573 317 F 317 (507)
Q Consensus 317 ~ 317 (507)
+
T Consensus 175 ~ 175 (641)
T 3cp8_A 175 N 175 (641)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=9e-05 Score=70.26 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=98.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccCC--C------------------------------------CC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP--S------------------------------------MD 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~--~------------------------------------~d 254 (507)
-+|+|||+|+.|+.+|..+++. |.+|+++++.+.... . ..
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~ 145 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 145 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence 3799999999999999999998 999999998654420 0 11
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCceEEEEEEcC----C--eEE-EEEee---cC------CCceEEEEc------------
Q 010573 255 GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSG----D--GVK-LTLEP---AA------GGEKTILEA------------ 305 (507)
Q Consensus 255 ~~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~----~--~v~-v~~~~---~~------~g~~~~i~~------------ 305 (507)
.++...+.+.+.+ .|++++.++.++++..++ + .+. +.+.. .. ..+..++.+
T Consensus 146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~ 225 (326)
T 2gjc_A 146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS 225 (326)
T ss_dssp HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence 2344555666666 499999999999997663 2 332 33321 01 114568999
Q ss_pred ---CEEEEeecCCCCCCCCCCcccCceecCCCC------eec-------CCCCCC--CCCCeEEecCCC----CC----C
Q 010573 306 ---DVVLVSAGRTPFTAGLGLDKIGVETDKMGR------IPV-------NERFAT--NIPGVYAIGDVI----PG----P 359 (507)
Q Consensus 306 ---D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~------i~V-------d~~~~t--~~~~IyA~GD~a----~~----~ 359 (507)
+.||.|+|.......+ +...-..++..+. ... -++.+. -+|++|++|-.+ +. |
T Consensus 226 ~~~~~VV~ATG~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~ 304 (326)
T 2gjc_A 226 QKHGVILSTTGHDGPFGAF-CAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGP 304 (326)
T ss_dssp TTCCEEEECCCCC--CCSH-HHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCS
T ss_pred ccCCEEEECcCCCchHHHH-HHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCCh
Confidence 9999999987654322 1110011111111 111 112222 689999999777 22 3
Q ss_pred CcHhHHHHHHHHHHHHHc
Q 010573 360 MLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~ 377 (507)
-+.. -...|+.||+.|+
T Consensus 305 ~fg~-m~~sg~~~a~~~~ 321 (326)
T 2gjc_A 305 TFGA-MALSGVHAAEQIL 321 (326)
T ss_dssp CCHH-HHHHHHHHHHHHH
T ss_pred hhhh-hhhhhHHHHHHHH
Confidence 2322 3457888888775
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=3.2e-05 Score=78.75 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=70.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
..+++|||||+.|+.+|..|++. |.+|+++++.+.+.. . +
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~---------~----------------------------~ 229 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR---------G----------------------------F 229 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST---------T----------------------------S
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc---------c----------------------------c
Confidence 46899999999999999999999 999999999654311 0 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC---CEEEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~---~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
+ ..+...+.+.+++.||+++.+ .+..+.. ..+.+.+.+| .++.+|.||+|+|.+|..
T Consensus 230 d------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G--~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 230 D------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG--AEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp C------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEESC
T ss_pred C------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCC--cEEEcCEEEEccCCCcCc
Confidence 0 011222345667789999887 3444432 2367777777 579999999999998853
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.8e-05 Score=78.01 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=69.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+... ++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~d-- 225 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-------------------------------------FD-- 225 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-------------------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-------------------------------------cC--
Confidence 468999999999999999999999999999986543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecC--CE--EEEEccCCceEEEEeCeEEEccCCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISP--SE--VSVDTIEGGNTVVKGKNIIIATGSDVKS 190 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~--~~--~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 190 (507)
..+...+.+.+++.||+++.+. +..+.. +. +.+.+.+|+ ..+.+|.||+|+|.+|..
T Consensus 226 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~-~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 226 ----------ECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSK-SIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp ----------HHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSC-EEEEESEEEECSCEEECC
T ss_pred ----------HHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCc-EEEEcCEEEECCCCCCcc
Confidence 0111223455666789998873 444432 22 567776663 579999999999988864
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.6e-05 Score=78.42 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=69.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
..+++|||||+.|+.+|..|++. |.+|+||++.+.+-. . +
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~---------~----------------------------~ 233 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR---------G----------------------------F 233 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT---------T----------------------------S
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc---------c----------------------------c
Confidence 46899999999999999999999 999999998654311 0 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC---CEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP---SEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~---~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
+ ..+...+.+.+++.+|+++.+ .+..+.. ..+.+.+.+| .++.+|.||+|+|.+|.
T Consensus 234 d------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G--~~i~~D~vv~a~G~~p~ 293 (495)
T 2wpf_A 234 D------------ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESG--KTLDVDVVMMAIGRIPR 293 (495)
T ss_dssp C------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSCEEEC
T ss_pred C------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCC--cEEEcCEEEECCCCccc
Confidence 0 011222345667789999988 3444432 2366777777 57999999999998875
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-05 Score=80.08 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=68.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+.+.. . ++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~---------~----------------------------~~-- 225 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ---------G----------------------------AD-- 225 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST---------T----------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc---------c----------------------------cC--
Confidence 46899999999999999999999999999998654311 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccC----CceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIE----GGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~----g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+ .+..++ .+...+.+.+ | .++.+|.||+|+|.+|.
T Consensus 226 ----------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g--~~~~~D~vv~a~G~~p~ 287 (482)
T 1ojt_A 226 ----------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPK--EPQRYDAVLVAAGRAPN 287 (482)
T ss_dssp ----------HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCS--SCEEESCEEECCCEEEC
T ss_pred ----------HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCc--eEEEcCEEEECcCCCcC
Confidence 011222345667788999887 444443 3345566554 4 46789999999999885
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=7.4e-05 Score=77.49 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=75.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC---------------------------------------C--
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------------------------------------M-- 253 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---------------------------------------~-- 253 (507)
-.|+|||+|..|+.+|..+++.|.+|+++++.+.+... .
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~ 201 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 201 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 47999999999999999999999999999987643100 0
Q ss_pred -----------------------------------------------CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcC-
Q 010573 254 -----------------------------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG- 285 (507)
Q Consensus 254 -----------------------------------------------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~- 285 (507)
...+...+.+.+++.||+++++++++++..++
T Consensus 202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 281 (566)
T 1qo8_A 202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD 281 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence 11233455667778899999999999998776
Q ss_pred CeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 286 DGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 286 ~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+.+. +.+.+ .++...++.+|.||+|+|....
T Consensus 282 g~v~Gv~~~~-~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 282 HSVVGAVVHG-KHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp SBEEEEEEEE-TTTEEEEEEEEEEEECCCCCTT
T ss_pred CcEEEEEEEe-CCCcEEEEEcCEEEEecCCccc
Confidence 6543 55442 2333347899999999997654
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=9.4e-05 Score=76.26 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=72.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC-ccC--C---------------------C------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA-DIV--P---------------------S------------------ 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~--~---------------------~------------------ 252 (507)
-.|+|||+|..|+++|..+++.|.+|.++++.+ .+. + .
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 469999999999999999999999999999763 110 0 0
Q ss_pred ------------CC-HHHHHHHHHHHHh-cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 253 ------------MD-GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 253 ------------~d-~~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.| ..+...+.+.+++ .|++++ +..|+.+..+++.+. |.+. ++.++.+|.||+|+|..++
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~-----dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTN-----LGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEET-----TSCEEECSEEEECCTTCBT
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEEC-----CCcEEEeCEEEEccCCCcc
Confidence 01 1234556667776 599995 679999887766654 5543 4568999999999998765
Q ss_pred C
Q 010573 318 T 318 (507)
Q Consensus 318 ~ 318 (507)
.
T Consensus 182 ~ 182 (637)
T 2zxi_A 182 G 182 (637)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=7.6e-05 Score=76.97 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=73.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--------C-------------CCC----------------HHH
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--------P-------------SMD----------------GEI 257 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--------~-------------~~d----------------~~~ 257 (507)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. | .+. +++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 479999999999999999999999999999875421 1 011 234
Q ss_pred HHHHHHHHHhcC--cEEEcCceEEEEEEcCC--eEEEEEeecCCCceEEEEcCEEEEeecC--CCCC
Q 010573 258 RKQFQRSLEKQK--MKFMLKTKVVGVDLSGD--GVKLTLEPAAGGEKTILEADVVLVSAGR--TPFT 318 (507)
Q Consensus 258 ~~~~~~~l~~~G--v~i~~~~~v~~i~~~~~--~v~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~ 318 (507)
.+.+....++.+ +.++++++|++++.+++ .+.+++. +++++.+|.||+|+|. .|..
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~-----~G~~~~ad~vV~AtG~~s~p~~ 158 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN-----HGDRIRARYLIMASGQLSVPQL 158 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET-----TCCEEEEEEEEECCCSCCCCCC
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEEC-----CCCEEEeCEEEECcCCCCCCCC
Confidence 455555555554 67889999999987643 5666654 4457999999999995 4544
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00012 Score=75.84 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=75.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC---------------------------------------C-
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS---------------------------------------M- 253 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~---------------------------------------~- 253 (507)
..+|+|||+|..|+.+|..+++.|.+|+++++.+.+... .
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 357999999999999999999999999999987643200 0
Q ss_pred ------------------------------------------------CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcC
Q 010573 254 ------------------------------------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG 285 (507)
Q Consensus 254 ------------------------------------------------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 285 (507)
...+...+.+.+++.||+++++++++++..++
T Consensus 206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~ 285 (572)
T 1d4d_A 206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA 285 (572)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence 11233456667778899999999999997665
Q ss_pred -CeEE-EEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 286 -DGVK-LTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 286 -~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+.+. +.+.+ .++...++.+|.||+|+|..+.
T Consensus 286 ~g~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 286 SGKVTGVLVKG-EYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp -CCEEEEEEEE-TTTEEEEEECSEEEECCCCCTT
T ss_pred CCeEEEEEEEe-CCCcEEEEEcCEEEEeCCCCcc
Confidence 5443 55442 2333457999999999997664
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=4.3e-05 Score=77.99 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=69.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+... . +
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~------~-------------------------------d-- 222 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY------E-------------------------------D-- 222 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC------S-------------------------------S--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------c-------------------------------C--
Confidence 468999999999999999999999999999986543110 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.||+++.+ .+..+. ...+.+.+.+| .++.+|.||+|+|.+|.
T Consensus 223 ----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~aD~Vv~a~G~~p~ 280 (499)
T 1xdi_A 223 ----------ADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDG--RTVEGSHALMTIGSVPN 280 (499)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTS--CEEEESEEEECCCEEEC
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCC--cEEEcCEEEECCCCCcC
Confidence 011222345667789999877 344443 23366666666 67999999999999885
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.9e-05 Score=78.85 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=73.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC--CC----------CC-HHHHHHHHHHH-HhcCcEEEcCceE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV--PS----------MD-GEIRKQFQRSL-EKQKMKFMLKTKV 278 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~--~~----------~d-~~~~~~~~~~l-~~~Gv~i~~~~~v 278 (507)
.+++|||+|+.|+.+|..+++. |.+|+++++.+... +. .+ .++.....+.+ +..|++++.++.+
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v 116 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV 116 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence 5799999999999999999986 88999999876531 00 01 11111223444 3459999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+.++.+++.+.+.. ..+++..++.+|.+|+|+|.+|...
T Consensus 117 ~~i~~~~~~v~v~~--~~~g~~~~~~~d~lviAtG~~p~~p 155 (480)
T 3cgb_A 117 TKVDTEKKIVYAEH--TKTKDVFEFSYDRLLIATGVRPVMP 155 (480)
T ss_dssp EEEETTTTEEEEEE--TTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEECCCCEEEEEE--cCCCceEEEEcCEEEECCCCcccCC
Confidence 99976666655542 1222334799999999999988764
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.7e-05 Score=76.36 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=69.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-------------------------------CCCHH--------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------------------------------SMDGE-------- 256 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------~~d~~-------- 256 (507)
+|+|||+|+.|+.+|..+++.|.+|+++++.+.+.. .++..
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY 85 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence 699999999999999999999999999996664310 11110
Q ss_pred ---HH--HHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEE--EEcCEEEEeecCCCCCCC
Q 010573 257 ---IR--KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTI--LEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 257 ---~~--~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~--i~~D~vi~a~G~~p~~~~ 320 (507)
+. ..+.+.+++.|++++.+ .+..+ +.+.+.+... ++++ +.+|.+|+|+|.+|....
T Consensus 86 ~~~l~~~~~~~~~~~~~~v~~~~g-~v~~i--d~~~~~V~~~-----~g~~~~~~~d~lviAtG~~p~~p~ 148 (466)
T 3l8k_A 86 VQELRFKQHKRNMSQYETLTFYKG-YVKIK--DPTHVIVKTD-----EGKEIEAETRYMIIASGAETAKLR 148 (466)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEESE-EEEEE--ETTEEEEEET-----TSCEEEEEEEEEEECCCEEECCCC
T ss_pred heeccccchHHHHHHhCCCEEEEe-EEEEe--cCCeEEEEcC-----CCcEEEEecCEEEECCCCCccCCC
Confidence 01 33445566779999876 56666 3556666543 3345 999999999999887653
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.84 E-value=8.6e-05 Score=75.62 Aligned_cols=98 Identities=23% Similarity=0.331 Sum_probs=69.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..|++.|.+|+++++.+.+... ++
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~d-- 238 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-------------------------------------MD-- 238 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-------------------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-------------------------------------CC--
Confidence 468999999999999999999999999999986543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccC---CceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIE---GGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~---g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+ +.+.+.+.+.+ |+..++.+|.||+|+|.+|.
T Consensus 239 ----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 301 (491)
T 3urh_A 239 ----------GEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS 301 (491)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred ----------HHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence 0112223455677899998874 4333 34455555442 54578999999999999885
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=8.2e-05 Score=75.70 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..|++.|.+|+++++...+.. ++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~--------------------------------------~d-- 224 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRG--------------------------------------FD-- 224 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT--------------------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccccc--------------------------------------CC--
Confidence 35799999999999999999999999999998421100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe---cCCEEEEEccC---CceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---SPSEVSVDTIE---GGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---d~~~~~v~~~~---g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+ +...+.+.+.+ |+..++.+|.||+|+|.+|.
T Consensus 225 ----------~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~ 288 (488)
T 3dgz_A 225 ----------QQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE 288 (488)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence 0112223456777899998874 3333 33445554433 53446899999999998874
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=2.7e-05 Score=79.38 Aligned_cols=105 Identities=13% Similarity=0.246 Sum_probs=73.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-C-C--------CCCH-HHHHHHHHHH--HhcCcEEEcCceEEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-V-P--------SMDG-EIRKQFQRSL--EKQKMKFMLKTKVVGV 281 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-~-~--------~~d~-~~~~~~~~~l--~~~Gv~i~~~~~v~~i 281 (507)
++|||||+|+.|+.+|..|.+.+.+||+|++++.. . | .+++ ++...+.+.+ ++.+++++. .++++|
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~-~~v~~I 121 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYE-AEATSI 121 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEE-EEEEEE
T ss_pred CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEE-EEEEEE
Confidence 58999999999999999999999999999988753 1 1 1222 1111123332 345788874 578888
Q ss_pred EEcCCeEEEEEee-------------cCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 282 DLSGDGVKLTLEP-------------AAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 282 ~~~~~~v~v~~~~-------------~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.+...+.+...+ ...+++.++++|.+|+|+|.+|+...
T Consensus 122 D~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ 173 (502)
T 4g6h_A 122 NPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG 173 (502)
T ss_dssp EGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT
T ss_pred EhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC
Confidence 8777766654311 11245678999999999999998754
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.4e-05 Score=73.58 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=69.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-------CCHHHH------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------MDGEIR------------------------------ 258 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------~d~~~~------------------------------ 258 (507)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... +.+...
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 7999999999999999999999999999987654210 111110
Q ss_pred -----------------------------HHHHHHHH-hcCcEEEcCceEEEEEEcC-CeEEEEEeecCCCceEEEEcCE
Q 010573 259 -----------------------------KQFQRSLE-KQKMKFMLKTKVVGVDLSG-DGVKLTLEPAAGGEKTILEADV 307 (507)
Q Consensus 259 -----------------------------~~~~~~l~-~~Gv~i~~~~~v~~i~~~~-~~v~v~~~~~~~g~~~~i~~D~ 307 (507)
..+.+.|. ..+..++++++++.++..+ +++++++. +++++.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~-----dG~~~~adl 157 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFA-----DGSHENVDV 157 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEET-----TSCEEEESE
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEEC-----CCCEEEeeE
Confidence 11223222 2244678889999997654 46788876 567899999
Q ss_pred EEEeecCCCC
Q 010573 308 VLVSAGRTPF 317 (507)
Q Consensus 308 vi~a~G~~p~ 317 (507)
||-|.|....
T Consensus 158 vVgADG~~S~ 167 (412)
T 4hb9_A 158 LVGADGSNSK 167 (412)
T ss_dssp EEECCCTTCH
T ss_pred EEECCCCCcc
Confidence 9999998764
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=81.54 Aligned_cols=43 Identities=26% Similarity=0.432 Sum_probs=38.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCCCCCceecc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTCLN 84 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~~~ 84 (507)
..+||+|||||++|+++|..|++.|+ +|+|+|+++.+||.|..
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceee
Confidence 35799999999999999999999998 89999999999998754
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.4e-06 Score=81.99 Aligned_cols=89 Identities=22% Similarity=0.251 Sum_probs=69.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-------CC--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-------VP--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-------~~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ .| .+++++.....+.+++.|+++++++.+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 196 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG---- 196 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence 3678999999999999999999999999999998764 23 2466777778888999999999988652
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.. +++. + ..+.+|.|++|+|..
T Consensus 197 --~~--v~~~-----~-~~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 197 --RD--ASLP-----E-LRRKHVAVLVATGVY 218 (456)
T ss_dssp --TT--BCHH-----H-HHSSCSEEEECCCCC
T ss_pred --cE--EEhh-----H-hHhhCCEEEEecCCC
Confidence 11 2221 1 135699999999986
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=73.67 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=68.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..|++.|.+|+++++.+.+... .+
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~-- 220 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-------------------------------------VD-- 220 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-------------------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-------------------------------------cC--
Confidence 468999999999999999999999999999996543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEe--cCCEEEEEccCCc-eEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTIEGG-NTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--d~~~~~v~~~~g~-~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+ .+..+ +.+.+.+.+.++. ...+.+|.||+|+|.+|.
T Consensus 221 ----------~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~ 281 (476)
T 3lad_A 221 ----------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPV 281 (476)
T ss_dssp ----------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEEC
T ss_pred ----------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCccc
Confidence 011222345667789999887 34443 3344555555432 367999999999998875
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.75 E-value=2e-05 Score=83.35 Aligned_cols=43 Identities=30% Similarity=0.569 Sum_probs=39.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
...+||+|||||++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~ 147 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 147 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 4568999999999999999999999999999999999998654
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00019 Score=72.50 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=68.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..+++.|.+|+++++.+.+... ++
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-------------------------------------~~-- 210 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-------------------------------------FD-- 210 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-------------------------------------cC--
Confidence 468999999999999999999999999999985432100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecC--C-EEEEE-ccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISP--S-EVSVD-TIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~--~-~~~v~-~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.|++++.+ .+..+.. + .+.+. +.+| . +.+|.||+|+|.+|.
T Consensus 211 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g--~-i~aD~Vv~a~G~~p~ 269 (463)
T 4dna_A 211 ----------QDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHG--E-IVADQVMLALGRMPN 269 (463)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSC--E-EEESEEEECSCEEES
T ss_pred ----------HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCC--e-EEeCEEEEeeCcccC
Confidence 011223345677789999886 3444432 2 25677 7777 5 999999999998875
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=73.50 Aligned_cols=98 Identities=19% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+++++.+.+... .+
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~d-- 227 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-------------------------------------FD-- 227 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-------------------------------------SC--
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-------------------------------------cC--
Confidence 468999999999999999999999999999985543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--C-C-EEEEEccC---Cce--EEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--P-S-EVSVDTIE---GGN--TVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~-~-~~~v~~~~---g~~--~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+. . . .+.+.+.+ ++. ..+.+|.||+|+|.+|.
T Consensus 228 ----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~ 294 (478)
T 3dk9_A 228 ----------SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPN 294 (478)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEES
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccC
Confidence 0112223456677899998874 44443 2 2 35565554 222 68999999999998875
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00015 Score=73.22 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=68.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc--------------------------cCCC----------CC-HH
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD--------------------------IVPS----------MD-GE 256 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~--------------------------~~~~----------~d-~~ 256 (507)
..+++|||+|+.|+.+|..+++.|.+|+++++... ..+. .+ +.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (467)
T 1zk7_A 4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSK 83 (467)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCHHH
Confidence 36799999999999999999999999999997730 0111 11 11
Q ss_pred HHH-------H-----HHHHHHhc-CcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 257 IRK-------Q-----FQRSLEKQ-KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 257 ~~~-------~-----~~~~l~~~-Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+.. . ..+.+++. |++++.+. +..+ +.+.+.+.+. +++.+++.+|.+|+|+|.+|....
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~---~g~~~~~~~d~lviAtGs~p~~p~ 154 (467)
T 1zk7_A 84 LLAQQQARVDELRHAKYEGILGGNPAITVVHGE-ARFK--DDQSLTVRLN---EGGERVVMFDRCLVATGASPAVPP 154 (467)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEE-EEEE--ETTEEEEEET---TSSEEEEECSEEEECCCEEECCCC
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEE-EEEc--cCCEEEEEeC---CCceEEEEeCEEEEeCCCCCCCCC
Confidence 111 1 12445556 99998763 5555 3455666543 222368999999999999887653
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00031 Score=71.59 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 257 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+...+.+.+++.|++++.+++|+++..+++.+.+++.+..+|+..++.+|.||.|+|...
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 344456666778999999999999987776666766533334445799999999999764
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00036 Score=71.96 Aligned_cols=99 Identities=13% Similarity=0.258 Sum_probs=74.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC------------------------------C------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP------------------------------S------------ 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~------------------------------~------------ 252 (507)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 3699999999999999999999999999997643210 0
Q ss_pred -------C---------------------C-HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEE
Q 010573 253 -------M---------------------D-GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTIL 303 (507)
Q Consensus 253 -------~---------------------d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i 303 (507)
+ + ..+.+.+.+.+++. +++++++++++.+++++.+++.+..+|...++
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i 183 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAV 183 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEE
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEE
Confidence 0 0 12344455555554 88899999999888888888875333444689
Q ss_pred EcCEEEEeecCCC
Q 010573 304 EADVVLVSAGRTP 316 (507)
Q Consensus 304 ~~D~vi~a~G~~p 316 (507)
.+|.||.|.|...
T Consensus 184 ~a~~vVgADG~~S 196 (549)
T 2r0c_A 184 HARYLVACDGASS 196 (549)
T ss_dssp EEEEEEECCCTTC
T ss_pred EeCEEEECCCCCc
Confidence 9999999999654
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.71 E-value=2.3e-05 Score=77.03 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=32.6
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGAL 78 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~ 78 (507)
+||+|||||++|+++|..|++. |++|+|+|+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 4899999999999999999999 9999999997765
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.70 E-value=3e-05 Score=83.47 Aligned_cols=42 Identities=31% Similarity=0.592 Sum_probs=38.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCcee
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~ 82 (507)
...+||+|||||++|++||..|++.|++|+|+|+.+.+||.+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~ 317 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRV 317 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCce
Confidence 446799999999999999999999999999999999999864
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.8e-05 Score=76.91 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=31.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCC------CcEEEEecCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG------LKTTCIEKRGA 77 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g------~~V~lie~~~~ 77 (507)
+||+|||||++|+++|++|++.| .+|+|+|++..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 48999999999999999999998 99999999653
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=74.23 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=68.0
Q ss_pred CCcEEEECCChHHHHHHHHHHH----CCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ----LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~----~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (507)
..+++|||||+.|+.+|..|++ .|.+|+++++.+.+-+. .+|
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~-----~l~----------------------------- 225 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK-----ILP----------------------------- 225 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT-----TSC-----------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccc-----cCC-----------------------------
Confidence 4689999999999999999887 47899999885432110 000
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEe--cCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.||+++.+ .+..+ +...+.+.+.+| .++.+|.||+|+|.+|.
T Consensus 226 --------------~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG--~~i~aD~Vv~a~G~~pn 283 (493)
T 1m6i_A 226 --------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDG--RKVETDHIVAAVGLEPN 283 (493)
T ss_dssp --------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECCCEEEC
T ss_pred --------------HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCC--CEEECCEEEECCCCCcc
Confidence 001122345667789999887 34444 334566777787 68999999999999875
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.69 E-value=4.6e-05 Score=77.57 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=73.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC----------CCC---HHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------SMD---GEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~~d---~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
.+|+|||+|+.|+.+|..|++. .+|+++++.+.+.. .++ .++...+.+.+ +.|++++.++.+.++
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i 186 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV 186 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence 5799999999999999999999 99999998775411 111 23333334444 669999999999988
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
..+++.+.+...+ .++...+.+|.+|+|+|..|...
T Consensus 187 ~~~~~~~~~~~~~--~~~~~~~~~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 187 FDKGEYFLVPVVR--GDKLIEILAKRVVLATGAIDSTM 222 (493)
T ss_dssp EECSSSEEEEEEE--TTEEEEEEESCEEECCCEEECCC
T ss_pred EcCCcEEEEEEec--CCeEEEEECCEEEECCCCCccCC
Confidence 7766655544321 22234799999999999988654
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00016 Score=73.36 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=68.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..+++.|.+|+++++.+.+.. . ++
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~---------~----------------------------~~-- 231 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR---------N----------------------------FD-- 231 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST---------T----------------------------SC--
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc---------c----------------------------cC--
Confidence 46899999999999999999999999999998543211 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEe--cCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFI--SPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.|++++.+ .+..+ +...+.+.+.+| .++.+|.||+|+|.+|.
T Consensus 232 ----------~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~aD~Vi~A~G~~p~ 289 (484)
T 3o0h_A 232 ----------YDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNG--QTICADRVMLATGRVPN 289 (484)
T ss_dssp ----------HHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTS--CEEEESEEEECCCEEEC
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCC--cEEEcCEEEEeeCCCcC
Confidence 011122345566678998876 34443 334567777777 67999999999998875
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0002 Score=72.70 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=66.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||+|+.|+..|..|++.|.+|+++++...+.+ ++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~--------------------------------------~d-- 226 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRG--------------------------------------FD-- 226 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTT--------------------------------------SC--
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcc--------------------------------------cC--
Confidence 35799999999999999999999999999988321100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec---CCEEEEEccCC---ceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEG---GNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d---~~~~~v~~~~g---~~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +..+. ...+.+.+.++ +..++.+|.||+|+|.+|.
T Consensus 227 ----------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~ 290 (483)
T 3dgh_A 227 ----------QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL 290 (483)
T ss_dssp ----------HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred ----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence 0112223456677899998874 44442 22355554443 3468999999999998874
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00045 Score=71.77 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=76.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc------CCeeEEEcccCccCCC------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL------GSEVTVVEFAADIVPS------------------------------------ 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~------g~~Vtlv~~~~~~~~~------------------------------------ 252 (507)
-.|+|||+|+.|+-+|..|++. |.+|+++++.+.+...
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4699999999999999999999 9999999976432100
Q ss_pred ---------C---C--------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCC-eEE-EEEee---cCCCc--
Q 010573 253 ---------M---D--------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD-GVK-LTLEP---AAGGE-- 299 (507)
Q Consensus 253 ---------~---d--------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-~v~-v~~~~---~~~g~-- 299 (507)
+ + ..+.+.+.+.+++.|+++++++.++++..+++ .+. |.+.+ ..+|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~ 195 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence 0 1 14456677777888999999999999987654 343 65532 01222
Q ss_pred -----eEEEEcCEEEEeecCCCC
Q 010573 300 -----KTILEADVVLVSAGRTPF 317 (507)
Q Consensus 300 -----~~~i~~D~vi~a~G~~p~ 317 (507)
+.++.+|.||.|.|....
T Consensus 196 ~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 196 TTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EEEECCCEEECSEEEECCCTTCH
T ss_pred cccCCceEEECCEEEEeeCCCch
Confidence 358999999999998764
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=3.1e-05 Score=77.97 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=68.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccC--------CCC--CHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIV--------PSM--DGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~--------~~~--d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
.+++++|||+|+.|+.+|..|.+.| .+|+++++.+.+. +.+ .+++...+.+.+++.||+++.++.+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~- 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG- 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence 3678999999999999999999998 8999999887654 222 23566777788888999999887662
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.. +++. + ..+.+|.||+|||..|
T Consensus 84 -----~~--V~~~-----~-~~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 -----RD--VTVQ-----E-LQDAYHAVVLSYGAED 106 (460)
T ss_dssp -----TT--BCHH-----H-HHHHSSEEEECCCCCE
T ss_pred -----eE--EEec-----c-ceEEcCEEEEecCcCC
Confidence 11 2221 1 2468999999999885
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00034 Score=71.63 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=64.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..|++.|.+|+++++...+.. ++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~--------------------------------------~d-- 249 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--------------------------------------FD-- 249 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTT--------------------------------------SC--
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccc--------------------------------------CC--
Confidence 35799999999999999999999999999998321100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EE---EecC---CEEEEE--ccCCc-eEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GK---FISP---SEVSVD--TIEGG-NTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~---~~d~---~~~~v~--~~~g~-~~~~~~d~lvlAtG~~p~ 189 (507)
..+...+.+.+++.+|+++.+. +. ..+. ..+.+. ..+++ ...+.+|.||+|+|.+|.
T Consensus 250 ----------~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~ 316 (519)
T 3qfa_A 250 ----------QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDAC 316 (519)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEES
T ss_pred ----------HHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCccc
Confidence 0112223456677899998873 22 2222 334443 33443 356889999999998874
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00033 Score=73.13 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+++|||||+.|+.+|..|++.|.+|+++++.
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 318 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS 318 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 357999999999999999999999999999984
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3.4e-05 Score=81.47 Aligned_cols=35 Identities=37% Similarity=0.602 Sum_probs=32.6
Q ss_pred CCcEEEECCChHHHHHHHHHHH-----CCCcEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ-----LGLKTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~-----~g~~V~lie~~~~ 77 (507)
.+||+||||||+|+++|..|++ .|.+|+||||.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 4799999999999999999999 9999999999654
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00011 Score=72.91 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCcEEEcCceEE---------EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 257 IRKQFQRSLEKQKMKFMLKTKVV---------GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 257 ~~~~~~~~l~~~Gv~i~~~~~v~---------~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+...+.+.+++.|++++.+++|+ +++.+++.+.+.+. ++ ++.+|.||+|+|...
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~-----~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHE-----TR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBC-----CE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEEC-----Cc-EEECCEEEECCCccH
Confidence 44556677778899999999999 87655555544321 33 799999999999764
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00052 Score=72.14 Aligned_cols=102 Identities=17% Similarity=0.300 Sum_probs=76.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHh-cCCeeEEEcccCccCC------------------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWAR-LGSEVTVVEFAADIVP------------------------------------------ 251 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~~~------------------------------------------ 251 (507)
..|+|||+|+.|+-+|..|++ .|.+|+++++.+....
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 469999999999999999999 9999999987643210
Q ss_pred -------------------C-----CC-HHHHHHHHHHHHhcCc--EEEcCceEEEEEEcCC----eEEEEEeec---CC
Q 010573 252 -------------------S-----MD-GEIRKQFQRSLEKQKM--KFMLKTKVVGVDLSGD----GVKLTLEPA---AG 297 (507)
Q Consensus 252 -------------------~-----~d-~~~~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~~----~v~v~~~~~---~~ 297 (507)
. ++ ..+...+.+.+++.|+ ++++++++++++.+++ ++.+++.+. .+
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~ 192 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA 192 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence 0 00 2455567777778876 9999999999987653 577777641 13
Q ss_pred CceEEEEcCEEEEeecCCC
Q 010573 298 GEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 298 g~~~~i~~D~vi~a~G~~p 316 (507)
|..+++.+|.||.|.|...
T Consensus 193 G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 193 GQIETVQARYVVGCDGARS 211 (639)
T ss_dssp TCEEEEEEEEEEECCCTTC
T ss_pred CCeEEEEeCEEEECCCcch
Confidence 4456899999999999653
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=3.5e-05 Score=77.55 Aligned_cols=88 Identities=20% Similarity=0.321 Sum_probs=67.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh-c------CCeeEEEcccCccC--------C--CCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWAR-L------GSEVTVVEFAADIV--------P--SMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~-~------g~~Vtlv~~~~~~~--------~--~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
+++|+|||+|+.|+.+|..|.+ . |.+|+++++.+.+. + ...+++...+.+.+++.|++++.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 4689999999999999999999 7 99999999887643 1 1234566777788888899999885
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.+ +.. +++. ++ .+.+|.||+|+|..
T Consensus 83 ~v------~~~--v~~~-----~~-~~~~d~lViAtG~~ 107 (456)
T 1lqt_A 83 VV------GEH--VQPG-----EL-SERYDAVIYAVGAQ 107 (456)
T ss_dssp CB------TTT--BCHH-----HH-HHHSSEEEECCCCC
T ss_pred EE------CCE--EEEC-----CC-eEeCCEEEEeeCCC
Confidence 53 122 2222 22 47899999999997
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00012 Score=77.67 Aligned_cols=87 Identities=28% Similarity=0.388 Sum_probs=66.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC---------CCCC--HHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---------PSMD--GEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---------~~~d--~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
.++|+|||+|+.|+.+|..+++.|.+|+++++.+.+. +... .+....+.+.+++.||++++++.++.
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-- 450 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-- 450 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence 4689999999999999999999999999999876542 1111 23445567778888999998875431
Q ss_pred EcCCeEEEEEeecCCCceEEE-EcCEEEEeecCCCCCCC
Q 010573 283 LSGDGVKLTLEPAAGGEKTIL-EADVVLVSAGRTPFTAG 320 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i-~~D~vi~a~G~~p~~~~ 320 (507)
..+ .+|.||+|||.+|....
T Consensus 451 ------------------~~~~~~d~lviAtG~~p~~~~ 471 (671)
T 1ps9_A 451 ------------------DQLQAFDETILASGIVPRTPP 471 (671)
T ss_dssp ------------------SSSCCSSEEEECCCEEECCCC
T ss_pred ------------------HHhhcCCEEEEccCCCcCCCC
Confidence 113 78999999999987653
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00079 Score=68.77 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcC-EEEEeecCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEAD-VVLVSAGRTP 316 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~~D-~vi~a~G~~p 316 (507)
.+...+.+.+++.|++++++++++++..+ ++.+. +.+.. ++...++.+| .||+|+|-..
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~--~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ--YGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE--TTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE--CCcEEEEEeCCeEEEeCCChh
Confidence 34455666677889999999999999877 45443 55443 2334579996 9999999665
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0012 Score=63.02 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=99.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccCC---------------------------CC-----------C
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIVP---------------------------SM-----------D 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~~---------------------------~~-----------d 254 (507)
-.|+|||+|+.|+.+|..+++. |.+|+++++.+.+.. .+ .
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~ 159 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA 159 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence 4799999999999999999997 999999998754310 00 1
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCceEEEEEEcC-----------------C--eEE-EEEee---cCC------CceEEEE
Q 010573 255 GEIRKQFQRSLEK-QKMKFMLKTKVVGVDLSG-----------------D--GVK-LTLEP---AAG------GEKTILE 304 (507)
Q Consensus 255 ~~~~~~~~~~l~~-~Gv~i~~~~~v~~i~~~~-----------------~--~v~-v~~~~---~~~------g~~~~i~ 304 (507)
.++.+.+.+.+++ .|++++.++.++++..++ + .+. +.+.. ... .+..++.
T Consensus 160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~ 239 (344)
T 3jsk_A 160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN 239 (344)
T ss_dssp HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence 2344556666666 599999999999886654 2 222 22211 011 2456899
Q ss_pred cCEEEEeecCCCCCCCCCC---cccCce--ecCCCCeecC-------CCCCCCCCCeEEecCCC----C----CCCcHhH
Q 010573 305 ADVVLVSAGRTPFTAGLGL---DKIGVE--TDKMGRIPVN-------ERFATNIPGVYAIGDVI----P----GPMLAHK 364 (507)
Q Consensus 305 ~D~vi~a~G~~p~~~~l~~---~~~gl~--~~~~G~i~Vd-------~~~~t~~~~IyA~GD~a----~----~~~~~~~ 364 (507)
++.||.|+|.......... ...++. +......+.+ ++-+--+||+|++|=.+ + +|.+..
T Consensus 240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~g~~rmgp~fg~- 318 (344)
T 3jsk_A 240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEIDGANRMGPTFGA- 318 (344)
T ss_dssp CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHHTCEECCSCCHH-
T ss_pred cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhcCCCCCCcccce-
Confidence 9999999998765321101 111221 1111112211 11222369999999766 2 333332
Q ss_pred HHHHHHHHHHHHcC
Q 010573 365 AEEDGVACVEFLAG 378 (507)
Q Consensus 365 A~~~g~~aa~~i~~ 378 (507)
=...|+.||+.++.
T Consensus 319 m~~sg~~~a~~~~~ 332 (344)
T 3jsk_A 319 MALSGVKAAHEAIR 332 (344)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHH
Confidence 34578888877753
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0014 Score=65.19 Aligned_cols=35 Identities=40% Similarity=0.403 Sum_probs=31.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT 35 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 36999999999999999999999999999987654
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00086 Score=70.70 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=74.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHh-----cCCeeEEEcccCccCC--C---CC------------------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWAR-----LGSEVTVVEFAADIVP--S---MD------------------------------ 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~-----~g~~Vtlv~~~~~~~~--~---~d------------------------------ 254 (507)
-.|+|||+|+.|+-+|..|++ .|.+|+++++.+.... . +.
T Consensus 9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~~~tle~l~~lGl~~~l~~~~~~~~~~~~~~ 88 (665)
T 1pn0_A 9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNLGLADKILSEANDMSTIALYN 88 (665)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECHHHHHHHHTTTCHHHHHTTCBCCCEEEEEE
T ss_pred CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEChHHHHHHHHCCCHHHHHHhccccceEEEEe
Confidence 369999999999999999999 9999999997643210 0 00
Q ss_pred ------------------------------HHHHHHHHHHHHhcC---cEEEcCceEEEEEEcC--------CeEEEEEe
Q 010573 255 ------------------------------GEIRKQFQRSLEKQK---MKFMLKTKVVGVDLSG--------DGVKLTLE 293 (507)
Q Consensus 255 ------------------------------~~~~~~~~~~l~~~G---v~i~~~~~v~~i~~~~--------~~v~v~~~ 293 (507)
..+.+.+.+.+++.| +++++++.++.++.++ .++.+++.
T Consensus 89 ~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~ 168 (665)
T 1pn0_A 89 PDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLR 168 (665)
T ss_dssp ECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEE
T ss_pred CCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEE
Confidence 123345556666666 8999999999998764 46788776
Q ss_pred ec---------------------------------------CCCceEEEEcCEEEEeecCCC
Q 010573 294 PA---------------------------------------AGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 294 ~~---------------------------------------~~g~~~~i~~D~vi~a~G~~p 316 (507)
+. .+|..+++.+|+||-|.|.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S 230 (665)
T 1pn0_A 169 YMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHS 230 (665)
T ss_dssp ECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTC
T ss_pred ecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCC
Confidence 42 234447899999999999653
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00055 Score=72.66 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCcEEEEC--CChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIG--GGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG--~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..+|+||| +|..|+.+|..|++.|.+|+++++.+.+..... .. .
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~------------~~----------------------~ 568 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTN------------NT----------------------F 568 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGG------------GG----------------------T
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccc------------cc----------------------h
Confidence 35699999 999999999999999999999998654322100 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEc-cCCceEEEEeCeEEEccCCCCC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDT-IEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~-~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
....+.+.+++.+|+++.+. +..++.+...+.. .+++..++.+|.||+|+|.+|.
T Consensus 569 --------------~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~ 625 (690)
T 3k30_A 569 --------------EVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625 (690)
T ss_dssp --------------CHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred --------------hHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence 01112355677899999884 6667777766653 2344578999999999999875
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=4.9e-05 Score=84.30 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=70.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCccC-------C--CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIV-------P--SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
+++|+|||+|+.|+.+|..|++.|. +|+++++.+.+. + .++.+......+.+++.||++++++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence 5789999999999999999999998 799999876542 2 23556666677888899999999877631
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecC-CCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGR-TPFT 318 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~ 318 (507)
.. +++. ++.++.+|.||+|+|. +|..
T Consensus 264 --~~--v~~~-----~~~~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 264 --NE--ITLN-----TLKEEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp --TS--BCHH-----HHHHTTCCEEEECCCCCEECC
T ss_pred --ce--EEhh-----hcCccCCCEEEEecCCCCCCC
Confidence 11 2221 2335679999999998 4764
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.001 Score=66.12 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=38.0
Q ss_pred HHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 263 RSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 263 ~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
+.+++.|++++++++|++++.+++++ ++ . +++++.+|.||+|+|....
T Consensus 197 ~~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~-----~g~~~~ad~Vv~a~~~~~~ 244 (421)
T 3nrn_A 197 RIIMENKGKILTRKEVVEINIEEKKV-YT-R-----DNEEYSFDVAISNVGVRET 244 (421)
T ss_dssp HHHHTTTCEEESSCCEEEEETTTTEE-EE-T-----TCCEEECSEEEECSCHHHH
T ss_pred HHHHHCCCEEEcCCeEEEEEEECCEE-EE-e-----CCcEEEeCEEEECCCHHHH
Confidence 44566799999999999998877777 43 2 4568999999999996543
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00068 Score=74.61 Aligned_cols=106 Identities=17% Similarity=0.189 Sum_probs=72.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC---CC-----C----CHHHHHHHHHHHHhc-CcEEEcCceEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV---PS-----M----DGEIRKQFQRSLEKQ-KMKFMLKTKVVG 280 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~-----~----d~~~~~~~~~~l~~~-Gv~i~~~~~v~~ 280 (507)
..+|+|||+|+.|+.+|..+++.|.+|+++++.+.+. .. + ..+....+.+.+.+. +++++.++.+..
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~ 207 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG 207 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence 3579999999999999999999999999999876541 01 1 123444555566664 999999999988
Q ss_pred EEEcCCeEEEEEee----cC------CCceEEEEcCEEEEeecCCCCCC
Q 010573 281 VDLSGDGVKLTLEP----AA------GGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 281 i~~~~~~v~v~~~~----~~------~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+...+....+.... .. .++..++.+|.+|+|||..|...
T Consensus 208 i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~ 256 (965)
T 2gag_A 208 SYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPI 256 (965)
T ss_dssp EETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCC
T ss_pred eecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCC
Confidence 85332211121100 00 11234799999999999988654
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0017 Score=66.87 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=39.1
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEcCCe--EEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+.+++.|++++.+ +|++++.++++ +.+++. +++++.+|.||.|+|.....
T Consensus 170 ~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~-----~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 170 FLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTK-----EGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEET-----TSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEEC-----CCcEEEeCEEEECCCCchhh
Confidence 3445556679999999 89999875544 345543 34579999999999987654
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0011 Score=66.78 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=69.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC----------C---------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP----------S--------------------------------- 252 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~--------------------------------- 252 (507)
.|+|||+|..|+-+|..+++.|.+|+++++...-.. .
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 389999999999999999999999999987610000 0
Q ss_pred --------------C----------------------CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeec
Q 010573 253 --------------M----------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPA 295 (507)
Q Consensus 253 --------------~----------------------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~ 295 (507)
+ ..++...+.+.+++.|++++.++.+ ++..+++.+. +.+.+
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~- 158 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEK- 158 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETT-
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEe-
Confidence 0 0123344555566789999999999 9976666553 33321
Q ss_pred CCCceEEEEcCEEEEeecCCCCC
Q 010573 296 AGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 296 ~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+..++.+|.||+|+|..+..
T Consensus 159 ---~~g~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 159 ---RGLVEDVDKLVLATGGYSYL 178 (472)
T ss_dssp ---TEEECCCSEEEECCCCCGGG
T ss_pred ---CCCeEEeeeEEECCCCCccc
Confidence 22357799999999987754
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00018 Score=74.32 Aligned_cols=37 Identities=32% Similarity=0.658 Sum_probs=33.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
...||++|||+|++|+.+|.+|++.|.+|+|+|+...
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3469999999999999999999999999999999653
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0019 Score=67.17 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=70.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccCC-----------CC---------------------C-------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVP-----------SM---------------------D------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~-----------~~---------------------d------- 254 (507)
.|+|||+|..|+-+|..+++.| .+|+++++.+.... .+ +
T Consensus 7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~ 86 (602)
T 1kf6_A 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYF 86 (602)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 5999999999999999999999 99999987532100 00 0
Q ss_pred -----------------------------------------------HHHHHHHHHHHHhcC-cEEEcCceEEEEEEcCC
Q 010573 255 -----------------------------------------------GEIRKQFQRSLEKQK-MKFMLKTKVVGVDLSGD 286 (507)
Q Consensus 255 -----------------------------------------------~~~~~~~~~~l~~~G-v~i~~~~~v~~i~~~~~ 286 (507)
..+...+.+.+++.| |+++.++.++++..+++
T Consensus 87 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g 166 (602)
T 1kf6_A 87 VHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDG 166 (602)
T ss_dssp HHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCC
Confidence 123334445555677 99999999999987766
Q ss_pred eEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 287 GVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 287 ~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.+. +.+.+..+|....+.++.||+|+|.
T Consensus 167 ~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 167 HVRGLVAMNMMEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp EEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred EEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 543 3333323343347999999999995
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00038 Score=72.02 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=40.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
+...|||+|||+|..|...|..|++.|++|++|||++..||.|.
T Consensus 5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccc
Confidence 33469999999999999999999999999999999999999764
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00013 Score=76.57 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=33.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC--------CcEEEEecCC-CC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG--------LKTTCIEKRG-AL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g--------~~V~lie~~~-~~ 78 (507)
.++|+|||||++|++||..|++.| ++|+|+|+++ ++
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 468999999999999999999988 9999999988 88
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00025 Score=73.20 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=33.0
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRGA 77 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~~ 77 (507)
...||+||||||.||+.+|.+|++.+ .+|+|||+.+.
T Consensus 4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 34599999999999999999999987 79999999654
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=72.54 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHH-CCCcEEEEecCCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGA 77 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~ 77 (507)
...||+||||+|+||..+|.+|++ .+++|+|+|+...
T Consensus 15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 346999999999999999999998 5799999999543
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0026 Score=64.64 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=75.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC--------------CeeEEEcccCcc-------CCC--------------------C-
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG--------------SEVTVVEFAADI-------VPS--------------------M- 253 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~-------~~~--------------------~- 253 (507)
.|+|||+|+.|+-+|..|.+.| ....++++.+.+ ++. +
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s 120 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT 120 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence 5999999999999999887643 245566665432 110 0
Q ss_pred -----------------------CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcC--------CeEEEEEeecCCCceEE
Q 010573 254 -----------------------DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSG--------DGVKLTLEPAAGGEKTI 302 (507)
Q Consensus 254 -----------------------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~--------~~v~v~~~~~~~g~~~~ 302 (507)
-.++.+.++...++.+..++++++|++++..+ +...|+..+..++..++
T Consensus 121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~ 200 (501)
T 4b63_A 121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA 200 (501)
T ss_dssp HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence 02445555555555667788999999997643 24678887777778889
Q ss_pred EEcCEEEEeecCCCCCCC
Q 010573 303 LEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 303 i~~D~vi~a~G~~p~~~~ 320 (507)
+.++.||+|+|..|....
T Consensus 201 ~~ar~vVlatG~~P~iP~ 218 (501)
T 4b63_A 201 RRTRKVVIAIGGTAKMPS 218 (501)
T ss_dssp EEEEEEEECCCCEECCCT
T ss_pred EEeCEEEECcCCCCCCCC
Confidence 999999999999887764
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00019 Score=73.77 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
..||+||||+|+||+.+|.+|++ |.+|+|+|+...
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~ 59 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL 59 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 45999999999999999999999 999999999543
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00029 Score=69.08 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=66.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC-----------------------CC-----------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV-----------------------PS----------------- 252 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~-----------------------~~----------------- 252 (507)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+.+. ..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 3699999999999999999999 99999999865430 00
Q ss_pred ---------------CCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 253 ---------------MDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 253 ---------------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
...++.+.+.+.+++.|++++++++|++++.. .++.+|.||.|.|..+.
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~----------------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL----------------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC----------------CGGGCSEEEECCGGGGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc----------------ccccCCEEEECCCCCch
Confidence 00345666777777779999998888776311 12568999999998775
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0015 Score=69.69 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=66.4
Q ss_pred CCcEEEEC--CChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 43 ENDVVVIG--GGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 43 ~~dvvIIG--~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
..+|+||| ||..|+.+|..|++.|.+|+|+++.+ +... ..+.. .
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~---------~~~~~------------------------~ 573 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANY---------MHFTL------------------------E 573 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHH---------HHHTT------------------------C
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccc---------ccccc------------------------c
Confidence 45899999 99999999999999999999999854 2110 00000 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEc--cCC-----------------ceEEEEeCeE
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDT--IEG-----------------GNTVVKGKNI 180 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~--~~g-----------------~~~~~~~d~l 180 (507)
...+.+.+++.||+++.+. +..+..+.+.+.. .++ +...+.+|.|
T Consensus 574 ---------------~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~V 638 (729)
T 1o94_A 574 ---------------YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSL 638 (729)
T ss_dssp ---------------HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEE
T ss_pred ---------------HHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEE
Confidence 0112345667899998884 5666666655542 222 1234899999
Q ss_pred EEccCCCCC
Q 010573 181 IIATGSDVK 189 (507)
Q Consensus 181 vlAtG~~p~ 189 (507)
|+|+|..|.
T Consensus 639 v~a~G~~p~ 647 (729)
T 1o94_A 639 VLVTGRHSE 647 (729)
T ss_dssp EEESCEEEC
T ss_pred EECCCCCCC
Confidence 999998875
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0075 Score=62.54 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=39.1
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+.+.+++.||+++.++.++++..+ ++.+. +.+.+..++....+.++.||+|+|...
T Consensus 149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 334455679999999999999875 45443 444433344445799999999999643
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0059 Score=62.25 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcCCe--EEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
+.+.+++.|++++.+ +|++++.++++ +.+++. +++++.+|.||.|+|.....
T Consensus 179 L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~-----~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 179 LSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTK-----QHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEES-----SSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEEC-----CCCEEEcCEEEECCCcchHH
Confidence 344455679999999 89999875544 445543 34589999999999987654
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0007 Score=69.02 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=33.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG 79 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G 79 (507)
.||++|||+|++|+.+|.+|++.|.+|+|+|+....+
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 5899999999999999999999999999999976443
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0083 Score=61.42 Aligned_cols=51 Identities=10% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHHHh-cCcEEEcCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 262 QRSLEK-QKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 262 ~~~l~~-~Gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+.+++ .|++++.+ +|++++.++++. .+++. ++.++.+|.||.|+|.....
T Consensus 182 ~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~-----~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 182 TEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITK-----QNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEES-----SSCEEECSEEEECSGGGCCC
T ss_pred HHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEEC-----CCCEEEcCEEEECCCcchHH
Confidence 344455 79999999 599997765443 44443 33469999999999997654
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00061 Score=70.30 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~ 76 (507)
..||+||||||.||+.+|.+|++. +.+|+|+|+..
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 469999999999999999999975 79999999965
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0081 Score=62.50 Aligned_cols=53 Identities=6% Similarity=0.081 Sum_probs=38.0
Q ss_pred HHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 264 SLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 264 ~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+++.||+++.++.++++..+++.+. +.+.+..++....+.++.||+|+|-..
T Consensus 164 ~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 164 RSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 33456899999999999987666554 444333344445799999999999654
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00083 Score=68.47 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
...||++|||+|++|+.+|.+|++.|.+|+|+|+...
T Consensus 9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4569999999999999999999999999999999643
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0014 Score=66.80 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=31.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc-CCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~ 249 (507)
-.|+|||+|.+|+-+|..|++. |.+|++++.++++
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~ 46 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP 46 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence 3699999999999999999874 9999999988775
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0045 Score=63.51 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
-.|+|||+|..|+-+|..+++ |.+|+++++.+.
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 369999999999999999999 999999998754
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0038 Score=62.47 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=29.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcC-CeeEEEcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLG-SEVTVVEF 245 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~ 245 (507)
.+|+|||+|..|+-+|..|++.| .+|+++++
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 47999999999999999999999 99999998
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.015 Score=61.00 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 263 RSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 263 ~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
+.+++.|++++.++.++++..+++.+. +.+.+..+|....+.++.||+|+|-..
T Consensus 166 ~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 166 NECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred HHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence 344556899999999999976666543 444333344445799999999998543
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00082 Score=69.19 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=32.5
Q ss_pred CCcEEEECCChHHHHHHHHHHH-CCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~~ 78 (507)
.||+||||||.||+.+|.+|++ .+.+|+|+|+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 4899999999999999999998 68999999996544
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0067 Score=60.97 Aligned_cols=41 Identities=34% Similarity=0.401 Sum_probs=34.2
Q ss_pred cEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 270 v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
++++++++|++|+.+++++.|++. +++++.+|.||+|++..
T Consensus 248 ~~i~~~~~V~~i~~~~~~~~v~~~-----~g~~~~ad~vi~a~p~~ 288 (470)
T 3i6d_A 248 TKVYKGTKVTKLSHSGSCYSLELD-----NGVTLDADSVIVTAPHK 288 (470)
T ss_dssp EEEECSCCEEEEEECSSSEEEEES-----SSCEEEESEEEECSCHH
T ss_pred CEEEeCCceEEEEEcCCeEEEEEC-----CCCEEECCEEEECCCHH
Confidence 589999999999988888887764 45679999999999743
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0017 Score=67.43 Aligned_cols=36 Identities=31% Similarity=0.378 Sum_probs=32.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHH-CCCcEEEEecCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGA 77 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~ 77 (507)
..||++|||+|++|+.+|.+|++ .|.+|+|+|+...
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~ 59 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCc
Confidence 45899999999999999999999 7999999999653
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=66.46 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=33.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC-CCcEEEEecCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKRGAL 78 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~~~~ 78 (507)
..||++|||+|++|+.+|.+|++. +.+|+|+|+....
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence 358999999999999999999998 8999999996543
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.024 Score=59.39 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=37.2
Q ss_pred HHHhc-Cc-EEEcCceEEEEEEcCC---eEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 264 SLEKQ-KM-KFMLKTKVVGVDLSGD---GVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 264 ~l~~~-Gv-~i~~~~~v~~i~~~~~---~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.+++. || +++.++.++++..+++ .+. +...+..++....+.++.||+|+|-..
T Consensus 160 ~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~ 218 (643)
T 1jnr_A 160 AAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT 218 (643)
T ss_dssp HHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence 33445 89 9999999999987655 554 443333344455799999999999654
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0051 Score=56.54 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=31.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999987654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0074 Score=50.55 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=32.4
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
|+......+++|||+|..|...|..|.+.|++|+++|++
T Consensus 13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 445555678999999999999999999999999999984
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.021 Score=59.79 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=28.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc------CCeeEEEccc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL------GSEVTVVEFA 246 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~------g~~Vtlv~~~ 246 (507)
-.|+|||+|..|+-+|..+++. |.+|+++++.
T Consensus 23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~ 60 (662)
T 3gyx_A 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA 60 (662)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence 3599999999999999999997 9999999874
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.012 Score=48.23 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+.+++|+|+|.-|...|..|.+.|++|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 358999999999999999999999999999983
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.017 Score=47.35 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+++|||.|..|...|..|.+.|++|+++|++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 457999999999999999999999999999994
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.01 Score=60.31 Aligned_cols=35 Identities=31% Similarity=0.385 Sum_probs=31.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
|+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence 68999999999999999999999999999998876
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.021 Score=46.49 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++++|||+|..|...|..|.+.|++|+++|++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 57999999999999999999999999999983
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.034 Score=46.29 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+++|+|+|..|...|..|.+.|++|+++|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 57999999999999999999999999999983
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.028 Score=44.16 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-CcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~ 75 (507)
.+++|+|+|..|...+..|.+.| ++|++++++
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 57999999999999999999999 899999983
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.029 Score=54.64 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=31.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~ 39 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI 39 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4899999999999999999999999999998765
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.035 Score=45.33 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+++|+|+|..|...|..|.+.|++|+++|++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47999999999999999999999999999983
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.042 Score=54.49 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
..++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34689999999999999999999999999999876
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.047 Score=55.24 Aligned_cols=61 Identities=28% Similarity=0.398 Sum_probs=45.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCC-------C-----------HHHHHHHHHHHHhcCcEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM-------D-----------GEIRKQFQRSLEKQKMKFM 273 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-------d-----------~~~~~~~~~~l~~~Gv~i~ 273 (507)
.+++|+|||+|.+|+.+|..|.+.|.+|+++++.+++.... + ......+.+.+++.|+++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 110 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN 110 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce
Confidence 46789999999999999999999999999999887663211 0 0113456677777887653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.055 Score=48.02 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
....|+|||||..|...|..|.+.|.+|+||+++
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4578999999999999999999999999999873
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.04 Score=54.31 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=31.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999876
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.042 Score=52.28 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=56.1
Q ss_pred CCeEEEEcCcHHHHH-HHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEE
Q 010573 214 PKKLVVIGAGYIGLE-MGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e-~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~ 292 (507)
.+++.|||.|.+|+. +|..|.+.|.+|+..+..+. + . ..+.|++.|++++.+...
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~-----~-~----~~~~L~~~gi~v~~g~~~-------------- 59 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY-----P-P----MSTQLEALGIDVYEGFDA-------------- 59 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC-----T-T----HHHHHHHTTCEEEESCCG--------------
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC-----c-H----HHHHHHhCCCEEECCCCH--------------
Confidence 578999999999996 88999999999999987653 1 1 234567789988754211
Q ss_pred eecCCCceEE-EEcCEEEEeecCCCCCCC
Q 010573 293 EPAAGGEKTI-LEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 293 ~~~~~g~~~~-i~~D~vi~a~G~~p~~~~ 320 (507)
+.-. ..+|.||.++|..|..+.
T Consensus 60 ------~~l~~~~~d~vV~Spgi~~~~p~ 82 (326)
T 3eag_A 60 ------AQLDEFKADVYVIGNVAKRGMDV 82 (326)
T ss_dssp ------GGGGSCCCSEEEECTTCCTTCHH
T ss_pred ------HHcCCCCCCEEEECCCcCCCCHH
Confidence 0000 147999999999887653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.091 Score=43.71 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
..+++++|+|+|.+|..++..|.+.|.+|+++.+.+.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3468999999999999999999999999999987653
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.063 Score=51.80 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
++|+|||+|..|++.|..+++.|.+|+++++++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999999765
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.083 Score=45.34 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHC-CCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL-GLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~-g~~V~lie~~ 75 (507)
..+++|||+|..|...|..|.+. |++|+++|++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIR 72 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 45799999999999999999999 9999999983
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.068 Score=47.44 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+++|||+|..|...|..|.+.|++|+++|++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~ 32 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD 32 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999984
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.073 Score=51.16 Aligned_cols=34 Identities=41% Similarity=0.536 Sum_probs=31.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG 38 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3699999999999999999999999999999863
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.072 Score=52.68 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=31.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6899999999999999999999999999987654
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.069 Score=52.66 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..+|+|||+|+.|+.+|..+++.|.+|+++++.+.+
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~ 62 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP 62 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 357999999999999999999999999999987753
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.091 Score=50.84 Aligned_cols=37 Identities=35% Similarity=0.724 Sum_probs=33.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc-Ccc
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA-ADI 249 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~-~~~ 249 (507)
.+.+|+|||+|..|+-+|..|.+.|.+|++++++ +++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 3678999999999999999999999999999988 554
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.05 Score=54.31 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=57.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~ 292 (507)
.++++.|||.|.+|+-+|..|.+.|.+|+..+..+... + ...+.|++.|++++.+.....
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~---~-----~~~~~L~~~gi~~~~g~~~~~------------ 67 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE---N-----PTAQSLLEEGIKVVCGSHPLE------------ 67 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG---C-----HHHHHHHHTTCEEEESCCCGG------------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC---C-----hHHHHHHhCCCEEEECCChHH------------
Confidence 37899999999999999999999999999998765211 1 123467778999876533100
Q ss_pred eecCCCceEEEE-cCEEEEeecCCCCCCC
Q 010573 293 EPAAGGEKTILE-ADVVLVSAGRTPFTAG 320 (507)
Q Consensus 293 ~~~~~g~~~~i~-~D~vi~a~G~~p~~~~ 320 (507)
..-. +|.||+++|..|+.+.
T Consensus 68 --------~~~~~~d~vv~spgi~~~~p~ 88 (451)
T 3lk7_A 68 --------LLDEDFCYMIKNPGIPYNNPM 88 (451)
T ss_dssp --------GGGSCEEEEEECTTSCTTSHH
T ss_pred --------hhcCCCCEEEECCcCCCCChh
Confidence 0011 6899999999887653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.2 Score=40.75 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=31.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
..++++|+|.|..|..++..|.+.|.+|+++++.+
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 35789999999999999999999999999998754
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.079 Score=53.19 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=32.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~ 249 (507)
++|+|||+|.+|+-+|..|++.|. +|+++++++++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 579999999999999999999999 99999987765
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.04 E-value=0.058 Score=49.49 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
....|+|||||..|...|..|.+.|++|+||+++
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3468999999999999999999999999999984
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.098 Score=50.74 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|+|||+|.+|+.+|..|+..|.+|+++|++
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~ 222 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVR 222 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 458999999999999999999999999999984
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.083 Score=51.20 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 479999999999999999999999999999864
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.11 Score=51.93 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|+|||.|.+|+++|..|+++|++|++.|++
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~ 41 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGK 41 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 468999999999999999999999999999984
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.083 Score=51.58 Aligned_cols=33 Identities=33% Similarity=0.399 Sum_probs=30.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 6 DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (397)
T 2oln_A 6 DVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999999999998754
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.11 Score=48.25 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|.|||+|.-|...|..+++.|++|+++|++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDIN 36 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 458999999999999999999999999999984
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.065 Score=53.25 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=30.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
.+|+|||.|.+|+++|..|+++|++|+++|...
T Consensus 6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 38 (439)
T 2x5o_A 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (439)
T ss_dssp CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSS
T ss_pred CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCC
Confidence 579999999999999999999999999999854
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.092 Score=51.80 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=33.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~ 249 (507)
..+|+|||+|..|+-+|..|++.| .+|+++++.+++
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~ 42 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 468999999999999999999999 899999988765
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.071 Score=51.47 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~ 36 (372)
T 2uzz_A 4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP 36 (372)
T ss_dssp EEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 699999999999999999999999999998753
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.31 Score=43.15 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=51.3
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEE
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLT 291 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~ 291 (507)
-.+++++|||+|.+|...+..|.+.|.+|+++.+. ..+++ .+..++.+++++...-
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~------~~~~l----~~l~~~~~i~~i~~~~-------------- 84 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT------VSAEI----NEWEAKGQLRVKRKKV-------------- 84 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS------CCHHH----HHHHHTTSCEEECSCC--------------
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC------CCHHH----HHHHHcCCcEEEECCC--------------
Confidence 34799999999999999999999999999999753 34443 3333455666542210
Q ss_pred EeecCCCceEEEEcCEEEEeecCCC
Q 010573 292 LEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 292 ~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
. ...--.+|+||.|||...
T Consensus 85 -~-----~~dL~~adLVIaAT~d~~ 103 (223)
T 3dfz_A 85 -G-----EEDLLNVFFIVVATNDQA 103 (223)
T ss_dssp -C-----GGGSSSCSEEEECCCCTH
T ss_pred -C-----HhHhCCCCEEEECCCCHH
Confidence 0 001123899999988654
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.096 Score=50.89 Aligned_cols=34 Identities=26% Similarity=0.465 Sum_probs=31.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~ 37 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3699999999999999999999999999998653
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.12 Score=52.04 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=33.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 46 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP 46 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 568999999999999999999999999999988765
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=92.65 E-value=0.094 Score=52.35 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=33.4
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 250 (507)
.+|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G 47 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 47 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 469999999999999999999999999999998763
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.1 Score=53.07 Aligned_cols=35 Identities=34% Similarity=0.571 Sum_probs=32.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~ 249 (507)
.+|+|||+|..|+-+|..|.+.| .+|++++.++++
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri 44 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 57999999999999999999999 999999987754
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.1 Score=50.11 Aligned_cols=34 Identities=38% Similarity=0.527 Sum_probs=31.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
.+.+|||+|||.||+.+|..|...|. +|+++|++
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45689999999999999999999998 99999995
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.1 Score=50.61 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=30.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999999874
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=92.42 E-value=0.11 Score=52.96 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=32.5
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 39 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 39 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 57999999999999999999999999999987765
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.12 Score=49.84 Aligned_cols=32 Identities=38% Similarity=0.616 Sum_probs=30.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
.+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 57999999999999999999999999999975
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.16 Score=48.17 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHH-HHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYV-AAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~-aA~~l~~~g~~V~lie~~ 75 (507)
+.++.|||.|.+|++ +|..|+++|++|++.|+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~ 37 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAK 37 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 458999999999997 788899999999999984
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=92.08 E-value=0.14 Score=48.10 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|.|||+|.-|...|..++..|++|+|+|.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~ 38 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIE 38 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSC
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECC
Confidence 357999999999999999999999999999984
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.14 Score=49.85 Aligned_cols=35 Identities=31% Similarity=0.648 Sum_probs=32.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.+++|||+|.+|+-+|..|.+.|.+|+++++++++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 38 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 47999999999999999999999999999987655
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.13 Score=51.67 Aligned_cols=36 Identities=22% Similarity=0.422 Sum_probs=32.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~ 51 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 51 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 568999999999999999999999999999988765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.11 Score=49.85 Aligned_cols=33 Identities=36% Similarity=0.467 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|+|||+|..|+.+|..|+..|.+|+++|++
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~ 216 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVR 216 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 458999999999999999999999999999984
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.12 Score=50.04 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=31.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.++|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 578999999999999999999 59999999988644
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.18 Score=47.67 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=30.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
..+|.|||+|..|...|..|+..|+ +|+|+|.+
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~ 37 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV 37 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4689999999999999999999998 99999974
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.24 Score=49.99 Aligned_cols=42 Identities=38% Similarity=0.567 Sum_probs=39.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
.+||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t 80 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWS 80 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCccee
Confidence 389999999999999999999999999999999999997643
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.14 Score=49.05 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
...+|+|+|+|.+|..+|..|...|. +|+++|++
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 45799999999999999999999998 79999995
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.16 Score=49.46 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=32.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..+++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 357999999999999999999999999999987664
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=91.73 E-value=0.15 Score=50.66 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=43.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-----------------CCHHHHHHHHHHHHhcCcEEE
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-----------------MDGEIRKQFQRSLEKQKMKFM 273 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----------------~d~~~~~~~~~~l~~~Gv~i~ 273 (507)
.+|+|||+|..|+-+|..|.+.|.+|+++++.+++... +... ...+.+.+++.|++..
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~ 80 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD-QTALISLLDELGLKTF 80 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT-CHHHHHHHHHTTCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc-cHHHHHHHHHcCCccc
Confidence 47999999999999999999999999999988765211 1111 2345566777888754
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=91.72 E-value=0.16 Score=47.96 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
.++|.|||+|..|.+.|..|++.|+ +|+++|.+
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~ 37 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA 37 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 4689999999999999999999998 99999984
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.13 Score=50.13 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=30.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHh-cC-CeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWAR-LG-SEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~-~g-~~Vtlv~~~~ 247 (507)
.+|+|||+|..|+-+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 99 9999999876
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.16 Score=51.28 Aligned_cols=36 Identities=36% Similarity=0.426 Sum_probs=33.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 48 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 468999999999999999999999999999998775
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=91.68 E-value=0.085 Score=52.69 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
.++++|+|+|-.|...|..|.+.|++|++||+++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3689999999999999999999999999999854
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=91.63 E-value=0.11 Score=53.19 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=31.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh---cCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWAR---LGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~---~g~~Vtlv~~~~ 247 (507)
..+|+|||||..|+-+|..|++ .|.+|+++++.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 4689999999999999999999 899999999865
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.18 Score=48.62 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
|.+|+|||||.-|..+|..+++.|++|+++|.++
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999865
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.59 E-value=0.16 Score=48.73 Aligned_cols=31 Identities=26% Similarity=0.247 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
++|.|||+|..|...|..|++.|++|+++++
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r 35 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDI 35 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 5899999999999999999999999999988
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=0.18 Score=47.87 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
++|.|||+|..|.+.|..|++.|+ +|+|+|.+
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~ 42 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV 42 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 589999999999999999999998 99999984
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.18 Score=47.55 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
++|+|||+|..|...|..|++.|+ +|+++|++
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~ 41 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 41 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 589999999999999999999998 99999983
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.16 Score=50.29 Aligned_cols=35 Identities=31% Similarity=0.361 Sum_probs=31.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 249 (507)
.+|+|||+|..|+-+|..|++.|. +|+++++.+..
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~ 42 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP 42 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 479999999999999999999999 99999987653
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.19 Score=47.50 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
++|.|||+|.-|.+.|..|++.|++|+++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r 33 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSR 33 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeC
Confidence 5899999999999999999999999999998
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.21 Score=47.60 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
++|.|||+|.-|.+.|..|++.|++|+++++
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r 34 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLAR 34 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEC
Confidence 5899999999999999999999999999987
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.16 Score=48.06 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=44.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh--cCCeeEEEcccCccCCC-------CC-HHHHHHHHHHHHhcCcEEEcCce
Q 010573 214 PKKLVVIGAGYIGLEMGSVWAR--LGSEVTVVEFAADIVPS-------MD-GEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~~~-------~d-~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
...|+|||+|+.|+-+|..|++ .|.+|+++++.+.+... ++ ..+...+.+.+++.|+++..+..
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~ 138 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGD 138 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCc
Confidence 4579999999999999999964 69999999987764210 11 11122334556677888776543
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.09 E-value=0.17 Score=49.60 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=31.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhc-CCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARL-GSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~-g~~Vtlv~~~~~~ 249 (507)
.+++|||+|..|+-+|..|++. |.+|+++++++++
T Consensus 8 ~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 8 FDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 5799999999999999999998 9999999987654
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.15 Score=48.83 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=29.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC------CeeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG------SEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g------~~Vtlv~~~~ 247 (507)
+|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6999999999999999999998 8999999764
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.2 Score=48.42 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=31.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
+++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 6899999999999999999999999999987654
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=90.96 E-value=0.25 Score=46.85 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
.+|.|||+|..|...|..|++.|+ +|+|+|.+
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~ 47 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDII 47 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 589999999999999999999998 99999984
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.94 E-value=0.26 Score=40.72 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999999999999875
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.21 Score=48.84 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|+|||+|.+|+.+|..|+..|.+|+++|++
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~ 204 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTR 204 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999984
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.21 Score=47.05 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
+++.|||+|.-|.+.|..|++.|++|+++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r 33 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLR 33 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEc
Confidence 4799999999999999999999999999998
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.2 Score=52.87 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=32.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~ 307 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAP 307 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 68999999999999999999999999999986543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.19 Score=53.09 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=32.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~ 299 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP 299 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 368999999999999999999999999999986543
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.26 Score=43.29 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=31.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
.+++.|||+|.-|.+.|..|++.|++|+++++++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 35799999999999999999999999999998643
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.21 Score=50.10 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=32.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~ 249 (507)
.+|+|||+|.+|+-+|..|.+.| .+|+++++.+++
T Consensus 5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~ 41 (475)
T 3lov_A 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL 41 (475)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 57999999999999999999999 999999987654
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.23 Score=48.90 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=33.9
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+..+.+.++.|||.|..|+..|..+++.|++|+.+|-+
T Consensus 15 ~p~~~~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did 53 (444)
T 3vtf_A 15 VPRGSHMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVN 53 (444)
T ss_dssp CCTTCCCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CCCCCCCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECC
Confidence 344455678999999999999999999999999999974
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.22 Score=40.50 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.++++|+|+|.+|..++..|.+.|.+|+++++.+
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3689999999999999999999999999998753
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.25 Score=48.04 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|+|||+|.+|+.++..|+..|.+|+++|+.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~ 204 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVR 204 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 458999999999999999999999999999984
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.22 Score=46.78 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=29.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
++|.|||+|.-|...|..|++.|++|+++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEEC
Confidence 4799999999999999999999999999998
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.27 Score=45.93 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+|.|||+|.-|...|..|++.|++|+++|++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 57999999999999999999999999999984
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.25 Score=45.68 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
+|.|||+|.-|...|..|++.|++|+++++++
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 33 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence 69999999999999999999999999999853
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.61 E-value=0.26 Score=46.30 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
...+++|.|||.|.-|...|..|++.|++|+++|++
T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345578999999999999999999999999999984
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.44 E-value=0.24 Score=47.66 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+|+|+|+|.+|..++..|+..|.+|+++|++
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~ 199 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 199 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 58999999999999999999999999999983
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.27 E-value=0.29 Score=39.38 Aligned_cols=33 Identities=12% Similarity=0.467 Sum_probs=29.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.+++|+|+|.+|..++..|.+.|.+|+++++.+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999997643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.24 Score=38.54 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=30.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~ 247 (507)
.++++|+|+|.+|..++..|.+.| .+|+++.|.+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 468999999999999999999999 8898887753
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=90.14 E-value=0.23 Score=51.18 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.-.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4579999999999999999999999999999865
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=90.08 E-value=0.29 Score=51.37 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=32.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
..++|+|||+|..|+.+|..|.+.|.+|+++++.++
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~ 141 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 141 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 367999999999999999999999999999998754
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.34 Score=44.26 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+++|||+|-+|.++|..|++.|.+|+|++|.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt 150 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRS 150 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 468999999999999999999999999999984
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=90.06 E-value=0.23 Score=45.02 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
.+|+|||+|..|..+|..|++.|. +++|+|++
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 579999999999999999999997 89999984
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.14 Score=41.92 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=29.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
..+++|||+|..|...|..|++.|.+|+++++
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r 52 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGR 52 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 35799999999999999999999999999998
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.3 Score=52.59 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=32.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.++|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~ 313 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 313 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcC
Confidence 579999999999999999999999999999977643
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.90 E-value=0.41 Score=44.82 Aligned_cols=35 Identities=31% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
....+|.|||.|.-|...|..|++.|++|+++|++
T Consensus 7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~ 41 (306)
T 3l6d_A 7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRS 41 (306)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34568999999999999999999999999999983
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.36 Score=45.56 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
..+|.|||+|..|.+.|..|+..|+ +++|+|.+
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~ 40 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIA 40 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4689999999999999999999988 99999984
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=89.78 E-value=0.35 Score=47.83 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=41.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV 85 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~ 85 (507)
|...+||+|||+|++|+++|..|++.|++|+|+|+++.+||.|...
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~ 48 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI 48 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEE
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCcccccccc
Confidence 4456899999999999999999999999999999999999987543
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=89.76 E-value=0.3 Score=44.76 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
-.+++|+|||+|.+|...+..|.+.|.+|+++....
T Consensus 11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred cCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 347899999999999999999999999999997643
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=89.75 E-value=0.45 Score=47.44 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEE-cCCeE-EEEEeecCCCceEEEEcCEEEEeecCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDL-SGDGV-KLTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~-~~~~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
.++.+.+.+.+++.|++++++++|++|.. +++.+ .|++. +++++.||.||.+.+..
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~-----~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSS-----DGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEET-----TSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEEC-----CCcEEECCEEEECCCcc
Confidence 47888899999999999999999999987 44544 35553 45689999999999988
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.29 Score=45.68 Aligned_cols=34 Identities=21% Similarity=0.079 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
.++|.|||.|.-|...|..|++.|++|+++|+++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 48 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRI 48 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999999999999999999999999999853
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.33 Score=45.43 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=30.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.++|.|||.|.-|...|..|++.|++|+++|++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 358999999999999999999999999999983
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=89.61 E-value=0.28 Score=48.90 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHC-CC-cEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL-GL-KTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~-g~-~V~lie~~~~ 77 (507)
.++|.|||+|.-|+..|..|++. |+ +|+++|+++.
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 46899999999999999999999 99 9999998643
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=0.31 Score=48.80 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.++|.|||.|.-|+..|..|++.|++|+++|++
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~ 40 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVD 40 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence 468999999999999999999999999999984
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.46 E-value=0.37 Score=47.23 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+|+|||.|..|...|..|.+.|++|++||++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d 36 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHD 36 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 57999999999999999999999999999984
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=89.39 E-value=0.34 Score=45.37 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
+|+|||+|..|.+.|..|+..|+ +|+|+|.+
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~ 34 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD 34 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 69999999999999999999998 99999983
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.3 Score=50.09 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.-.|+|||||..|+-+|..+++.|.+|+++++.+
T Consensus 18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d 51 (561)
T 3da1_A 18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND 51 (561)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3579999999999999999999999999999874
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=89.26 E-value=0.34 Score=48.79 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=55.5
Q ss_pred CCCCeEEEEcCcHHHHH-HHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEE
Q 010573 212 EVPKKLVVIGAGYIGLE-MGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKL 290 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e-~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v 290 (507)
...+++.|||-|-+|+- +|..|.+.|.+|+..+..+. + ..+.|++.|+++..+....
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~------~-----~~~~l~~~gi~~~~g~~~~----------- 77 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN------S-----VTQHLTALGAQIYFHHRPE----------- 77 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC------H-----HHHHHHHTTCEEESSCCGG-----------
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC------H-----HHHHHHHCCCEEECCCCHH-----------
Confidence 34689999999999996 89999999999999876531 1 2345778899987652110
Q ss_pred EEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 291 TLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 291 ~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
....+|.||.++|..|..+.
T Consensus 78 ----------~~~~~d~vV~Spgi~~~~p~ 97 (494)
T 4hv4_A 78 ----------NVLDASVVVVSTAISADNPE 97 (494)
T ss_dssp ----------GGTTCSEEEECTTSCTTCHH
T ss_pred ----------HcCCCCEEEECCCCCCCCHH
Confidence 01137999999999876643
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=0.44 Score=42.02 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=29.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++++.|||+|..|...|..|.+.|++|.+++++
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~ 60 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRN 60 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 358999999999999999999999999999983
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=0.33 Score=39.29 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=30.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467999999999999999999999999998764
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=89.17 E-value=0.4 Score=44.03 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
...++|+|+|-+|.++|..|++.|.+|+++++
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R 150 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNR 150 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEEC
Confidence 45799999999999999999999999999988
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=89.14 E-value=0.33 Score=48.37 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|+|||+|..|...+..|.+.|.+|+|++++
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~ 44 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence 468999999999999999999999999999984
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=89.12 E-value=0.28 Score=45.68 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+++.|||+|.-|.+.|..|++.|++|++++++
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESS
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEec
Confidence 47999999999999999999999999999984
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.37 Score=46.21 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=31.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
|...++|.|||.|.-|...|..|++.|++|+++|++
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~ 54 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLN 54 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCC
Confidence 445578999999999999999999999999999983
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=89.03 E-value=0.15 Score=45.62 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=29.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
...+++|+|+|..|...|..|.+.|+ |+++|++
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~ 40 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDE 40 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCG
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECC
Confidence 34589999999999999999999999 9999984
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.42 Score=46.09 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..|+|+|+|..|..+|..|+..|.+|+++|++
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~ 198 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVN 198 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 57999999999999999999999999999983
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=0.37 Score=48.49 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~ 249 (507)
..+++|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 467999999999999999999998 799999988764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.71 E-value=0.45 Score=45.61 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.++|.|||+|.-|.+.|..|++.|++|++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 468999999999999999999999999999983
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.65 E-value=0.44 Score=42.49 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+.++|.|| |.-|...+.+|.+.|++|++++++
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECC
Confidence 3568999998 999999999999999999999984
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=0.25 Score=46.39 Aligned_cols=35 Identities=17% Similarity=0.429 Sum_probs=31.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.++|.|||+|..|.-+|..++..|.+|++++..+.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~ 40 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR 40 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46899999999999999999999999999987653
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=0.38 Score=47.07 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=31.9
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEe
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIE 73 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie 73 (507)
+.+|+...+|+|+|+|..|...+..+++.|++|.++|
T Consensus 18 ~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 18 QGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp ---CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred eccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 5556667899999999999999999999999999999
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.46 E-value=0.5 Score=44.33 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK 74 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~ 74 (507)
...+|.|||+|..|.+.|..|+..|+ +|+|+|.
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~ 40 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDI 40 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 34689999999999999999999999 9999998
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=88.41 E-value=0.4 Score=47.58 Aligned_cols=32 Identities=38% Similarity=0.559 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++|.|||.|..|+..|..|++.|++|+++|++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~ 34 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTD 34 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECC
Confidence 48999999999999999999999999999984
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=88.40 E-value=0.32 Score=45.72 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=30.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
.+++|.|||.|.-|...|..|++.|+ +|+++|++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 35689999999999999999999999 99999983
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=88.39 E-value=1.2 Score=41.90 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=32.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
++++.|||-|.+|-.+|..+..+|.+|+.+.+.+.
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~ 174 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGR 174 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChH
Confidence 78999999999999999999999999999887653
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=88.36 E-value=0.51 Score=42.55 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..++|.|||+|.-|.+.|..|++.|++|++++++
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568999999999999999999999999999984
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.34 E-value=0.47 Score=44.67 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=30.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
.++|.|||+|..|.+.|..|+..+. ++.|+|.+
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~ 41 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF 41 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4689999999999999999999987 89999984
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=88.28 E-value=0.36 Score=48.24 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--CCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~ 75 (507)
.+++|.|||.|..|...|..|++. |++|+++|++
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~ 39 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN 39 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 346899999999999999999998 8999999984
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=0.5 Score=45.73 Aligned_cols=33 Identities=42% Similarity=0.612 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
...|+|||+|..|..+|..++..|.+|+++|++
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~ 200 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGMGATVTVLDIN 200 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 458999999999999999999999999999983
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.26 E-value=0.36 Score=42.73 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=30.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+++|+|.|| |..|...+..|.+.|++|.+++++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 468999996 899999999999999999999984
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=88.24 E-value=0.44 Score=44.36 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=29.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
.++|.|||+|.-|...|..|.+.|++|+++++
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~ 35 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDL 35 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeC
Confidence 46899999999999999999999999999988
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=88.24 E-value=0.6 Score=42.99 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=30.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
++|+|.|+|.-|...+..|.+.|++|++++++.
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 36 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSA 36 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999853
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.14 E-value=0.59 Score=43.92 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+|.|||+|.-|...|..|.+.|++|++++++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~ 62 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRT 62 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCC
Confidence 468999999999999999999999999999984
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=0.44 Score=46.78 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=30.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
....++|.|||.|.-|+..|..|++ |++|+++|++
T Consensus 33 ~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~ 67 (432)
T 3pid_A 33 GSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIV 67 (432)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSC
T ss_pred ccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecC
Confidence 3445689999999999999999998 9999999984
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=0.5 Score=44.32 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHC--CCcEEEEecC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~ 75 (507)
+|.|||+|..|.+.|..|++. +++|+++|++
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~ 34 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV 34 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 699999999999999999985 7899999985
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=87.97 E-value=0.49 Score=44.07 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=29.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK 74 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~ 74 (507)
..+++|||+|.+|.++|..|++.|. +|++++|
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR 173 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANR 173 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECS
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 4579999999999999999999997 8999988
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 507 | ||||
| d1dxla3 | 123 | d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas | 7e-52 | |
| d3lada3 | 124 | d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas | 4e-48 | |
| d1v59a3 | 123 | d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas | 3e-47 | |
| d1ojta3 | 128 | d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas | 8e-41 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 2e-40 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 5e-19 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 2e-39 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 3e-31 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 1e-04 | |
| d1lvla3 | 123 | d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas | 2e-35 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 9e-35 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 1e-28 | |
| d1ebda3 | 115 | d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas | 1e-34 | |
| d1xdia2 | 118 | d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas | 3e-33 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 4e-33 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 3e-17 | |
| d1dxla2 | 123 | c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase | 4e-33 | |
| d1feca3 | 128 | d.87.1.1 (A:358-485) Trypanothione reductase {Crit | 1e-31 | |
| d1mo9a3 | 140 | d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c | 2e-31 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 5e-31 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 1e-25 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 1e-30 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 5e-22 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 9e-05 | |
| d1gesa3 | 115 | d.87.1.1 (A:336-450) Glutathione reductase {Escher | 2e-30 | |
| d1h6va3 | 133 | d.87.1.1 (A:367-499) Mammalian thioredoxin reducta | 3e-30 | |
| d1onfa3 | 119 | d.87.1.1 (A:377-495) Glutathione reductase {Plasmo | 1e-29 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 5e-29 | |
| d3grsa3 | 115 | d.87.1.1 (A:364-478) Glutathione reductase {Human | 1e-28 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 9e-28 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 1e-27 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 1e-27 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 4e-15 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 3e-27 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 2e-26 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 6e-22 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 5e-26 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 5e-25 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 1e-21 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 5e-25 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 2e-23 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 3e-24 | |
| d1nhpa3 | 126 | d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus | 9e-24 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 4e-23 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 7e-12 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 1e-22 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 2e-20 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 3e-22 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 3e-21 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 3e-14 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 8e-21 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 1e-20 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 4e-20 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 2e-12 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 3e-05 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 3e-19 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 1e-18 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 1e-17 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 4e-17 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 4e-17 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 1e-16 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 2e-16 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 3e-16 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 6e-15 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 2e-14 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 2e-14 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 2e-13 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 4e-05 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 2e-13 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 4e-13 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 3e-12 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 4e-12 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 0.002 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 4e-11 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 1e-10 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 2e-10 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 2e-10 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 3e-10 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 7e-10 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 1e-09 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 3e-09 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 3e-09 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 3e-09 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 8e-08 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 4e-09 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 4e-09 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 4e-09 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 6e-09 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 4e-05 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 8e-09 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 1e-08 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 2e-07 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 2e-08 | |
| d2cula1 | 230 | c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T | 5e-08 | |
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 1e-07 | |
| d2bs2a2 | 336 | c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo | 3e-07 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 6e-07 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 3e-06 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 6e-07 | |
| d2gmha1 | 380 | c.3.1.2 (A:4-236,A:336-482) Electron transfer flav | 1e-06 | |
| d1jnra2 | 356 | c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct | 4e-06 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 5e-06 | |
| d1chua2 | 305 | c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E | 7e-06 | |
| d2gf3a1 | 281 | c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac | 9e-06 | |
| d1neka2 | 330 | c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase | 9e-06 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 2e-05 | |
| d1kf6a2 | 311 | c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es | 2e-05 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 3e-05 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 3e-05 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 3e-05 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 7e-05 | |
| d1gtea3 | 153 | c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas | 2e-04 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 3e-04 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 5e-04 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 6e-04 | |
| d3coxa1 | 370 | c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of | 6e-04 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 8e-04 | |
| d1pj5a2 | 305 | c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox | 0.002 | |
| d1pn0a1 | 360 | c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So | 0.002 | |
| d1n4wa1 | 367 | c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of | 0.003 | |
| d1kyqa1 | 150 | c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr | 0.003 | |
| d1mv8a2 | 202 | c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse | 0.004 |
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 170 bits (431), Expect = 7e-52
Identities = 111/123 (90%), Positives = 120/123 (97%)
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEK 444
YDKVPGVVYT+PEVASVGKTEEQVKE GVEYRVGKFPF+ANSRAKAID+AEG+VKI+AEK
Sbjct: 1 YDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEK 60
Query: 445 ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKP 504
ETDKILGVHIMAPNAGELIHEA +A+ YDASSEDIARVCHAHPTMSEA+KEAAMAT+DKP
Sbjct: 61 ETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKP 120
Query: 505 IHI 507
IHI
Sbjct: 121 IHI 123
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 160 bits (406), Expect = 4e-48
Identities = 59/123 (47%), Positives = 86/123 (69%)
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEK 444
YD +P V+YTHPE+A VGKTE+ +K GV VG FPF A+ RA A +D G VK++A+
Sbjct: 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADA 60
Query: 445 ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKP 504
+TD++LGVH++ P+A EL+ + +A+ + S+ED+ + AHP +SEAL EAA+A
Sbjct: 61 KTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHA 120
Query: 505 IHI 507
IH+
Sbjct: 121 IHV 123
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 158 bits (400), Expect = 3e-47
Identities = 80/122 (65%), Positives = 100/122 (81%)
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEK 444
Y+ +P V+Y+HPEVA VGKTEEQ+KE G++Y++GKFPF ANSRAK D EG VKIL +
Sbjct: 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDS 60
Query: 445 ETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKP 504
+T++ILG HI+ PNAGE+I EA LA+ Y AS+ED+ARVCHAHPT+SEA KEA MA +DK
Sbjct: 61 KTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKA 120
Query: 505 IH 506
IH
Sbjct: 121 IH 122
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 140 bits (355), Expect = 8e-41
Identities = 43/120 (35%), Positives = 63/120 (52%)
Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
+PGV YT PEVA VG+TE K + FP+ A+ RA A + K++ + ET
Sbjct: 4 IPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETG 63
Query: 448 KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
+I+G I+ PN G++I E LAI + DI + H HPT+ E++ AA +
Sbjct: 64 RIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGTCTDL 123
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 142 bits (359), Expect = 2e-40
Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 18/221 (8%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D + IGGG GG + +AA G K IE LGGTC+NVGC+P K + H++ +
Sbjct: 4 DYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTCVNVGCVPKKVMWHAAQIREAIH 62
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
+G + + + ++A + + + E + KN V +KG+ +F+
Sbjct: 63 MYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA---- 118
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL-----------ALNEV 213
T+E + +I+IATG S P ++ + + G N
Sbjct: 119 -KTLEVNGETITADHILIATGG-RPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTN 176
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
+ + +G +E+ V G ++ F +D
Sbjct: 177 IEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLD 217
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 83.8 bits (206), Expect = 5e-19
Identities = 37/213 (17%), Positives = 61/213 (28%), Gaps = 43/213 (20%)
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE-------------------------------F 245
+ IG G G+ + A G + ++E +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64
Query: 246 AADI-----VPSMDGEI---RKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAG 297
D + + E + + +L V V
Sbjct: 65 GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124
Query: 298 GEKTILEADVVLVSA----GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIG 353
GE + ++ R P + L+ GV+T++ G I V++ TNI G+YA+G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184
Query: 354 DVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYD 386
D L A G E L D
Sbjct: 185 DNTGAVELTPVAVAAGRRLSERLFNNKPDEHLD 217
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 140 bits (354), Expect = 2e-39
Identities = 136/149 (91%), Positives = 143/149 (95%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
SDENDVV+IGGGPGGYVAAIKAAQLG KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY
Sbjct: 1 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 60
Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
HEA HSFA+HGVK S+VE+DL AMM QKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF+SP
Sbjct: 61 HEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSP 120
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVK 189
SE+SVDTIEG NTVVKGK+IIIATGSDVK
Sbjct: 121 SEISVDTIEGENTVVKGKHIIIATGSDVK 149
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 118 bits (295), Expect = 3e-31
Identities = 63/72 (87%), Positives = 68/72 (94%)
Query: 313 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVAC 372
GRTPFT+GL LDKIGVETDK+GRI VNERF+TN+ GVYAIGDVIPGPMLAHKAEEDGVAC
Sbjct: 150 GRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVAC 209
Query: 373 VEFLAGKHGHVD 384
VE+LAGK GHVD
Sbjct: 210 VEYLAGKVGHVD 221
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE 244
+V+IG G G A+LG + T +E
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIE 33
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 125 bits (316), Expect = 2e-35
Identities = 44/120 (36%), Positives = 67/120 (55%)
Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
+ V +T PEV VGKT EQ + G++ V +FPF AN RA +++ G V+++A ++
Sbjct: 4 IAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNH 63
Query: 448 KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507
ILG + EL ++ A ED+A HAHPT+ EA++EAA+ +HI
Sbjct: 64 LILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI 123
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 128 bits (321), Expect = 9e-35
Identities = 91/235 (38%), Positives = 124/235 (52%), Gaps = 21/235 (8%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
+ + +DVV+IGGGP GYVAAIKAAQLG T C+EKRG LGGTCLNVGCIPSKALL++SH
Sbjct: 1 TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSH 60
Query: 99 MYHEAMHSFASHGVKF-SSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF 157
++H+ G+ +++++ KD AV LT GIE LFKKNKVTY KG G F
Sbjct: 61 LFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF 120
Query: 158 ISPSEVSVDTIEGGNTVV------KGKNIIIATGSDVKSLPGITIDEKRI--------VS 203
+++ V ++G V KNII+ATGS+V G + V
Sbjct: 121 EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVD 180
Query: 204 STGALALNEV----PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
G L +++ + V+G G + G + VE ++
Sbjct: 181 KRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEG--IAAVEMLKTGHGHVN 233
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (277), Expect = 1e-28
Identities = 40/83 (48%), Positives = 55/83 (66%)
Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361
+ V GR P+ AGLG +KIG+E DK GR+ ++++F + P + +GDV GPML
Sbjct: 151 VATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPML 210
Query: 362 AHKAEEDGVACVEFLAGKHGHVD 384
AHKAEE+G+A VE L HGHV+
Sbjct: 211 AHKAEEEGIAAVEMLKTGHGHVN 233
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 123 bits (310), Expect = 1e-34
Identities = 51/112 (45%), Positives = 71/112 (63%)
Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
+P VV++ PE ASVG E+Q K+ G++ KFPF AN RA A++D +G +K++ KE
Sbjct: 2 IPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDG 61
Query: 448 KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 499
I+G I+ PNA ++I E LAI ++EDIA HAHPT+ E EAA
Sbjct: 62 VIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEV 113
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 120 bits (301), Expect = 3e-33
Identities = 34/114 (29%), Positives = 57/114 (50%)
Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETD 447
V V+T PE+A+VG + + V R P N+RAK + G VKI + T
Sbjct: 4 VAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTG 63
Query: 448 KILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501
++G ++AP A ELI +A+ + ++A+ +P++S ++ EAA
Sbjct: 64 VVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM 117
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 124 bits (312), Expect = 4e-33
Identities = 59/286 (20%), Positives = 107/286 (37%), Gaps = 44/286 (15%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D++VIGGG GG AA +AA+ K +EK LGGTC+NVGC+P K + +++ ++ +
Sbjct: 3 DLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTCVNVGCVPKKIMFNAASVHD--I 59
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE-- 162
+ H + +LP ++ ++DK + L K+KV +G F+S +
Sbjct: 60 LENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRIL 119
Query: 163 -------VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI---VSSTGALALNE 212
+ D +++G+NI+IA G+ T + K V + + +
Sbjct: 120 IKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIVVD 179
Query: 213 VPKKLVVIGAGYIG--LEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270
++ V +G + + + + + F
Sbjct: 180 ENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYN------- 232
Query: 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316
V+LT G L AD + + R
Sbjct: 233 -----------------VQLTPVAINAGR---LLADRLFLKKTRKT 258
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 79.3 bits (194), Expect = 3e-17
Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 7/128 (5%)
Query: 298 GEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD----KMGRIPVNERFATNIPGVYAIG 353
+ ILE +L++ G P + + +E I V+E T++ +YA+G
Sbjct: 134 LNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVG 193
Query: 354 DVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGV 413
D M+ E + + ++ + + V ++ + ++ V ++ +
Sbjct: 194 DCC---MVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRL 250
Query: 414 EYRVGKFP 421
+ +
Sbjct: 251 FLKKTRKT 258
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 119 bits (300), Expect = 4e-33
Identities = 106/123 (86%), Positives = 118/123 (95%)
Query: 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249
SLPG+TIDEK+IVSSTGALAL+E+PKKLVVIGAGYIGLEMGSVW R+GSEVTVVEFA++I
Sbjct: 1 SLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60
Query: 250 VPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309
VP+MD EIRKQFQRSLEKQ MKF LKTKVVGVD SGDGVKLT+EP+AGGE+TI+EADVVL
Sbjct: 61 VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVL 120
Query: 310 VSA 312
VSA
Sbjct: 121 VSA 123
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 116 bits (291), Expect = 1e-31
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRA-KAIDDAEGIVKILAE 443
+ KV V++ P + G EE + + V + F + +V+I+
Sbjct: 1 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTN 60
Query: 444 KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501
++LGVH++ ++ E+I + + A D HPT +E L +
Sbjct: 61 HADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAY 118
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 115 bits (290), Expect = 2e-31
Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 16/135 (11%)
Query: 388 VPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFP----------------FLANSRAKAI 431
P ++TH EV+ +G EE+ + G E K P + + K
Sbjct: 4 YPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGT 63
Query: 432 DDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSE 491
G KI+ + +T K+LG H + A + + I + +++ + +
Sbjct: 64 AHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTH 123
Query: 492 ALKEAAMATHDKPIH 506
++ + + K +
Sbjct: 124 FIQLSRLRAGSKNLV 138
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 117 bits (294), Expect = 5e-31
Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 48/217 (22%)
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE-----------------------FAADIVPSM 253
+V+GAG G A+LG +VT+VE +
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65
Query: 254 DGEIRKQFQRSLEKQKMKFMLK------TKVVGVDLSGDGV-----------KLTLEPAA 296
+ K +++ K++ T V L G+ V T+
Sbjct: 66 EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVN 125
Query: 297 GGEKTILEADVVLVSAGRTPF--------TAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
G +++ G P T LGL++IG++ G I V+++ T++P
Sbjct: 126 GDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPN 185
Query: 349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDY 385
++AIGD++PGP LAHKA +G E +AG VDY
Sbjct: 186 IFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDY 222
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 103 bits (256), Expect = 1e-25
Identities = 73/155 (47%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
+ E + +V+G GPGGYVAAI+AAQLG K T +EK G LGG CLNVGCIPSKAL+ +SH Y
Sbjct: 1 AIETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRY 59
Query: 101 HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP 160
+ G+K +V +D + K V LT G+EGL K NKV VKG F+
Sbjct: 60 EQ-AKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA 118
Query: 161 SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT 195
+ V V + T KN IIATGS L G
Sbjct: 119 NTVRVVNGDSAQT-YTFKNAIIATGSRPIELVGRR 152
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 116 bits (292), Expect = 1e-30
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH 98
SA E DVVV+GGGPGGY AA AA GLK +E+ LGG CLNVGCIPSKALLH++
Sbjct: 2 SADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAA 61
Query: 99 MYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI 158
+ E + A++G+K+ E+D+ + A KD VS LT G+ G+ K KV ++G G+F+
Sbjct: 62 VIDE-VRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFL 120
Query: 159 SPSE 162
P
Sbjct: 121 DPHH 124
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 92.3 bits (228), Expect = 5e-22
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 305 ADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHK 364
+ ++ + R P + +K GV G I V+++ TN+P +YAIGD++ PMLAHK
Sbjct: 150 KNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHK 209
Query: 365 AEEDGVACVEFLAGKHGHVD 384
A +G E AG + D
Sbjct: 210 AVHEGHVAAENCAGHKAYFD 229
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 41.8 bits (97), Expect = 9e-05
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE 244
+VV+G G G A G +V +VE
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVAIVE 36
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 112 bits (280), Expect = 2e-30
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLANSRAKAIDDAEGIVKILA 442
Y +P VV++HP + +VG TE Q +E + +V K F A A +K++
Sbjct: 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVC 60
Query: 443 EKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+KI+G+H + E++ +A+ A+ +D HPT +E
Sbjct: 61 VGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF 111
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 112 bits (281), Expect = 3e-30
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRV---GKFPFLANSRAKAIDDAEGIVK-I 440
YD VP V+T E G +EE+ E E + F + + D+ + K I
Sbjct: 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVI 60
Query: 441 LAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 499
K+ ++++G H++ PNAGE+ A+ + + + HP +E ++
Sbjct: 61 CNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSVT 119
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 110 bits (275), Expect = 1e-29
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVG------KFPFLANSRAKAIDDAEGIV 438
Y +P V+++HP + ++G +EE ++ + V F + + + +
Sbjct: 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYL 60
Query: 439 KILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
K++ + + I G+HI+ NA E++ +A+ +A+ +D HPT +E
Sbjct: 61 KLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEF 115
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 108 bits (271), Expect = 5e-29
Identities = 65/122 (53%), Positives = 88/122 (72%), Gaps = 2/122 (1%)
Query: 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP 251
PGI IDE++IVSSTGAL+L E+PK+L +IG G IGLEMGSV++RLGS+VTVVEF I
Sbjct: 1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA 60
Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVL 309
SMDGE+ K Q+ L+KQ + F L TKV+ + D V++ +E ++ LEA+V+L
Sbjct: 61 SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL 120
Query: 310 VS 311
V+
Sbjct: 121 VA 122
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (268), Expect = 1e-28
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 385 YDKVPGVVYTHPEVASVGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILA 442
Y+ +P VV++HP + +VG TE++ + F A + ++K++
Sbjct: 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60
Query: 443 EKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAL 493
+ +K++G+H+ E++ +A+ A+ D HPT SE L
Sbjct: 61 ANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEEL 111
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 105 bits (262), Expect = 9e-28
Identities = 57/127 (44%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
Query: 188 VKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
V LP I D RI+ S+GALAL EVP KL++IG G IGLEMG+V++ LGS + VVE
Sbjct: 1 VTKLPFIPEDP-RIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59
Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307
++ D ++ K +Q+ E + M+ TK V V+ DGV +T E A K D
Sbjct: 60 GLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFE-GANAPKEPQRYDA 118
Query: 308 VLVSAGR 314
VLV+AGR
Sbjct: 119 VLVAAGR 125
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 109 bits (274), Expect = 1e-27
Identities = 41/251 (16%), Positives = 91/251 (36%), Gaps = 20/251 (7%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY- 100
E DVVV+G G G AA + ++ ++ IE+ + GG G + S ++
Sbjct: 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLF 92
Query: 101 -------HEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG 153
++ ++ + ++A+ + + N + + K N+V V
Sbjct: 93 LDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVT 152
Query: 154 YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEV 213
++ + + ++ V++ K ++ + G D P KR+ S + +
Sbjct: 153 NWALVAQNHHTQSCMDP--NVMEAKIVVSSCGHDG---PFGATGVKRLKSIGMIDHVPGM 207
Query: 214 PKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVP---SMDGEIRKQFQRSLEK 267
+ I V + G EV ++ A + P +M +K Q +L+
Sbjct: 208 KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKA 267
Query: 268 QKMKFMLKTKV 278
+ + +
Sbjct: 268 LGLPNAIDGTL 278
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 107 bits (268), Expect = 1e-27
Identities = 69/220 (31%), Positives = 107/220 (48%), Gaps = 16/220 (7%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
+++IGGGPGGYVAAI+A QLG+ T +E ALGGTCLN+GCIPSKAL+H + +H+A
Sbjct: 7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQAS 65
Query: 105 HSFASHG--VKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
+ +S +D+ +A KD V LT G+ L KK+ V V G+ K +
Sbjct: 66 RFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG-- 123
Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSST------GALALNEVPKK 216
+E ++ +++++ATGS LP + + A+A++E +
Sbjct: 124 ---KQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQT 180
Query: 217 LV--VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
+ V G + E + V E A +
Sbjct: 181 SMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFE 220
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 72.3 bits (176), Expect = 4e-15
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 314 RTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACV 373
R P T G L+ + ++ + I ++ER T++ V+AIGDV PMLAH+A G
Sbjct: 151 RRPRTKGFNLECLDLKMNG-AAIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVA 209
Query: 374 EFLAGKHGHVD 384
E +AGK +
Sbjct: 210 EIIAGKARRFE 220
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 110 bits (274), Expect = 3e-27
Identities = 49/343 (14%), Positives = 102/343 (29%), Gaps = 13/343 (3%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKT-TCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA 103
V+V+G G G AA + ++ G+ +E +GG + ++
Sbjct: 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGV 60
Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
+ + + L + D N+ + G++ ++ V + E+
Sbjct: 61 NGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSV--EEM 118
Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAG 223
+ + I+A + P +V V
Sbjct: 119 GEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQN 178
Query: 224 YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283
+ L S + V +V + G+ K +S + + L V +
Sbjct: 179 TVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKY 238
Query: 284 SGDGVKLTLE--PAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVN-- 339
S GV + E + ++ A + ++ + F L K+ + + VN
Sbjct: 239 SPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRA-IYQFWPVGVNRY 297
Query: 340 --ERFATNIPGVYAIGDVI--PGPMLAHKAEEDGVACVEFLAG 378
++ + VY G+ H A G+ E L
Sbjct: 298 EYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 105 bits (261), Expect = 2e-26
Identities = 95/232 (40%), Positives = 131/232 (56%), Gaps = 21/232 (9%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK------RGALGGTCLNVGCIPSKALL 94
S + DV+VIG GPGGYVAAIK+AQLGLKT IEK + ALGGTCLNVGCIPSKALL
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALL 60
Query: 95 HSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY 154
SS+ +HEA SF HG+ V +D+P M+A+KD+ V NLT G+ L K N VT +G+
Sbjct: 61 DSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH 120
Query: 155 GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEV- 213
GK ++ +V V +G + V+ +N+I+A+GS +P + + + +G + L+E
Sbjct: 121 GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSG-VTLDERG 179
Query: 214 -----------PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
+ IG G + + G V V E A M+
Sbjct: 180 FIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEG--VVVAERIAGHKAQMN 229
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 92.4 bits (228), Expect = 6e-22
Identities = 34/71 (47%), Positives = 44/71 (61%)
Query: 314 RTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACV 373
R P T L GV D+ G I V++ AT++PGVYAIGDV+ G MLAHKA E+GV
Sbjct: 159 RRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVA 218
Query: 374 EFLAGKHGHVD 384
E +AG ++
Sbjct: 219 ERIAGHKAQMN 229
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 100 bits (249), Expect = 5e-26
Identities = 51/120 (42%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 194 ITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM 253
+D+ IV STGAL VP KL VIGAG IGLE+GSVWARLG+EVTV+E +P++
Sbjct: 2 APVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAV 61
Query: 254 DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
D ++ K+ Q+ L KQ +K +L +V G ++ V + A G + D ++V+ G
Sbjct: 62 DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKS--QAFDKLIVAVG 119
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 100 bits (250), Expect = 5e-25
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 20/235 (8%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D +VIGGG GG +A +AA+LG + +E LGGTC+NVGC+P K + +++ M
Sbjct: 5 DYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSE-FM 62
Query: 105 HSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVS 164
H A +G + + + ++D VS L + K+ + ++G+ F S +
Sbjct: 63 HDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKP- 121
Query: 165 VDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGY 224
TIE +I+IATG + V +T L+LN++ + G+
Sbjct: 122 --TIEVSGKKYTAPHILIATGGMPSTPHE-------RVPNTKDLSLNKLGIQTD--DKGH 170
Query: 225 IGLEMGSVWARLGSEVTVVEFAADIV-PSMDGEIRKQFQRSLEKQKMKFMLKTKV 278
I V + V + D+ ++ + R L + ++ +K+
Sbjct: 171 I-----IVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKL 220
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.1 bits (225), Expect = 1e-21
Identities = 27/85 (31%), Positives = 37/85 (43%)
Query: 302 ILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361
I + R P T L L+K+G++TD G I V+E TN+ G+YA+GDV +L
Sbjct: 137 IATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALL 196
Query: 362 AHKAEEDGVACVEFLAGKHGHVDYD 386
A G L D
Sbjct: 197 TPVAIAAGRKLAHRLFEYKEDSKLD 221
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 101 bits (253), Expect = 5e-25
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 3/116 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
D + IGGG G + +G + +++ LGG+C + C+P + A
Sbjct: 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLAR 103
Query: 105 HSFASHGVK-FSSVEVDLPAMMAQKDKAVSNLTRG--IEGLFKKNKVTYVKGYGKF 157
+ + V + ++ + + + N + K
Sbjct: 104 TFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKV 159
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 97.3 bits (241), Expect = 2e-23
Identities = 44/242 (18%), Positives = 76/242 (31%), Gaps = 57/242 (23%)
Query: 195 TIDEKRIVSSTGALALNEVPKK--LVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--- 249
D ++ + P++ + IG G G + +G +V+ +
Sbjct: 25 APDGGEVIYNVD----ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGS 80
Query: 250 ------VPSMD---GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK 300
VP R+ Q + KVVG+ D + G
Sbjct: 81 CPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMN 140
Query: 301 -----------------------------TILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
+ +A ++++ G P T + E
Sbjct: 141 FQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELA 200
Query: 332 KM--------GRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHV 383
K+ G + VNE T++P VYA+GD+I GPM KA + G + G+ +
Sbjct: 201 KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGE--KI 258
Query: 384 DY 385
Y
Sbjct: 259 SY 260
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 95.3 bits (236), Expect = 3e-24
Identities = 47/120 (39%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Query: 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP 251
P RI+ STGAL L EVPK LVVIG GYIG+E+G+ +A G++VT++E A +I+
Sbjct: 1 PNFKFSN-RILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS 59
Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311
+ ++ ++ L+K+ ++ + G + DGV +T E A GE ++AD VLV+
Sbjct: 60 GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE--ANGETKTIDADYVLVT 117
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 94.2 bits (234), Expect = 9e-24
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 6/114 (5%)
Query: 396 PEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIM 455
+ AS G E ++LG E + D + K++ + ET +ILG +M
Sbjct: 13 YKFASTGINEVMAQKLGKETKAVTVVE-DYLMDFNPDKQKAWFKLVYDPETTQILGAQLM 71
Query: 456 APN-AGELIHEAVLAINYDASSEDIARVCHA-HPTMSEA---LKEAAMATHDKP 504
+ I+ LAI + ED+A P + + AA+ +
Sbjct: 72 SKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQE 125
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 95.9 bits (237), Expect = 4e-23
Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 22/215 (10%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK--RGALGGTCLNVGCIPSKALLHSSHMYHE 102
+V++GGGP GY AA+ AA +TT + +GG + C+PSK + S+ + E
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTE 62
Query: 103 -AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPS 161
+ F ++ LP + A+ + + I V + G G+ I +
Sbjct: 63 LRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDST 122
Query: 162 E------VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI---------VSSTG 206
+ +G + + +++ATG+ + LP ++ +
Sbjct: 123 PGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQLGRGN 182
Query: 207 ALALNEVPKKLV--VIGAGYI--GLEMGSVWARLG 237
L ++ V + L + AG L + SV A G
Sbjct: 183 YLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQG 217
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 63.2 bits (152), Expect = 7e-12
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 324 DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGH 382
+++G++ + + V+ T G+YA GD LA A G + G+
Sbjct: 172 ERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVS 230
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 94.6 bits (234), Expect = 1e-22
Identities = 58/248 (23%), Positives = 94/248 (37%), Gaps = 27/248 (10%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCI---------EKRGALGGTCLNVGCIPSK 91
S D+VVIG G GG A AA L K + ALGGTC+NVGC+P K
Sbjct: 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60
Query: 92 ALLHSS-HMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEG-LFKKNKVT 149
++ + +M + + SV + A++A K+KAVS + EG +T
Sbjct: 61 LMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120
Query: 150 YVKGYGKF----ISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSST 205
+ +G+G S D + + I++ATGS + GI + +
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQH-LGIEVPRSQ----- 174
Query: 206 GALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--VPSMDGEIRKQFQR 263
L L + + V G I ++ S + + + + + P E
Sbjct: 175 -TLQLEKAG--VEVAKNGAIKVDAYS-KTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDT 230
Query: 264 SLEKQKMK 271
+
Sbjct: 231 VFANKPRA 238
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 88.5 bits (218), Expect = 2e-20
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 297 GGEKTILEADVVLVSAGRTP--------FTAGLGLDKIGVETDKMGRIPVNERFATNIPG 348
L+ + +L++ G P + L L+K GVE K G I V+ TN+
Sbjct: 144 SAVLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDN 203
Query: 349 VYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380
+YAIGDV ML A +G A V+ +
Sbjct: 204 IYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 235
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 89.8 bits (222), Expect = 3e-22
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP 251
PG D++ +SS +L P K +V+GA Y+ LE A +G +VTV+ + ++
Sbjct: 1 PG---DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR 56
Query: 252 SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDG----VKLTLEPAAGGEKTILEADV 307
D ++ + +E+ +KF+ + ++ G +K+T + E E +
Sbjct: 57 GFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNT 116
Query: 308 VLVSAG 313
VL++ G
Sbjct: 117 VLLAVG 122
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 90.5 bits (223), Expect = 3e-21
Identities = 45/243 (18%), Positives = 77/243 (31%), Gaps = 18/243 (7%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT---------CLNVGCIPSK 91
S D+VVIG G GG AA AA L K + + G C+NVGC+P K
Sbjct: 1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKK 60
Query: 92 ALLHSSHMYHEAMHSFASHGVKFSSV--EVDLPAMMAQKDKAVSNLTRGIEGLF-KKNKV 148
++ + A G +F + ++A KD+AV N+ + + +F +
Sbjct: 61 LMVTGAQYMEHLRE-SAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGL 119
Query: 149 TYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGAL 208
+ G+G S + + + + ++ L + S
Sbjct: 120 EFFLGWGSLESK-----NVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTK 174
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
L +++ G E + V + P E
Sbjct: 175 DLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTT 234
Query: 269 KMK 271
K
Sbjct: 235 PRK 237
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 70.5 bits (171), Expect = 3e-14
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 313 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVAC 372
GR+P T L L GV G + V+E TN+ +YAIGDV ML A + A
Sbjct: 168 GRSPRTKDLQLQNAGVMIKN-GGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAAL 226
Query: 373 VEFLAGKHGH 382
V+ + G
Sbjct: 227 VDTVFGTTPR 236
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 91.4 bits (225), Expect = 8e-21
Identities = 30/334 (8%), Positives = 71/334 (21%), Gaps = 34/334 (10%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC---------LNVGCIPSK 91
+E DV+V+G G + + + G K +++ GG +
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63
Query: 92 ALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYV 151
+ + V + + G
Sbjct: 64 PPETMGRGRDW-NVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 152 KGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN 211
+ ++ + + K ++ D + + S
Sbjct: 123 STETEALAS-----NLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKF 177
Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA-------------DIVPSMDGEIR 258
++ + ++ + L + T+ GE+
Sbjct: 178 DLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELP 237
Query: 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318
+ F R +ML V + + V E + ++ P
Sbjct: 238 QGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-----EGEVARCKQLICDPSYVPDR 292
Query: 319 AGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352
+ F T + I
Sbjct: 293 VPIDDGSESQVFCSCSYD-ATTHFETTCNDIKDI 325
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 85.2 bits (210), Expect = 1e-20
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE 256
++SST ALA +P+ LVV+G GYIGLE+G + +LG++V+VVE I+P+ D E
Sbjct: 4 LGGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSE 63
Query: 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
+ SL+K + L V G + +G L + G + LEAD VLV+ G
Sbjct: 64 LTAPVAESLKKLGIALHLGHSVEGYE---NGCLLAND--GKGGQLRLEADRVLVAVG 115
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 87.1 bits (214), Expect = 4e-20
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK--------RGALGGTCLNVGCIPSKALLHS 96
D+++IGGG GG AA +AA+ K ++ LGGTC+NVGCIP K + +
Sbjct: 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQA 64
Query: 97 SHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 156
+ + S +V+ D M + +L G ++ KV Y YGK
Sbjct: 65 ALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK 124
Query: 157 FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKS 190
FI P ++ +G V + +IATG +
Sbjct: 125 FIGPHKIMATNNKGKEKVYSAERFLIATGERPRY 158
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.7 bits (156), Expect = 2e-12
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 330 TDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLAGK 379
+K G+IPV + TN+P +YAIGD++ G + L A + G + L G
Sbjct: 179 NEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGG 229
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 11/57 (19%), Positives = 19/57 (33%)
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
L++IG G GL A+ +V V++F + + K
Sbjct: 6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMH 62
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 87.2 bits (214), Expect = 3e-19
Identities = 43/363 (11%), Positives = 98/363 (26%), Gaps = 37/363 (10%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSH----MYH 101
V VIG G G AA K GL T E G GG +V ++
Sbjct: 4 VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEG 62
Query: 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS-- 159
+ S G++ L K+ + +
Sbjct: 63 DVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEP 122
Query: 160 -PSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLV 218
+ + + G +V +L+++ +L
Sbjct: 123 ILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELW 182
Query: 219 VIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ---------- 268
+ + + +G++ ++L + + + + +
Sbjct: 183 NLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLR 242
Query: 269 KMKFMLKTKVVGVDLSGDGV------KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG 322
+ + L ++V+ + S + + D V+++A + +
Sbjct: 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKS-MK 301
Query: 323 LDKIG-----------VETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVA 371
+ K G + + ++ N+PG++ G+ G + KA G
Sbjct: 302 IAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSV-GKALSSGCN 360
Query: 372 CVE 374
+
Sbjct: 361 AAD 363
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.5 bits (195), Expect = 1e-18
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250
+PG ++S G L E+P + V++GAGYI +EM + + LGS+ +++ ++
Sbjct: 3 IPGA----SLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL 58
Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK----TILEAD 306
S D I LE ++ + ++V V + G+++++ A G I + D
Sbjct: 59 RSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVD 118
Query: 307 VVLVSAG 313
+L + G
Sbjct: 119 CLLWAIG 125
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 77.6 bits (190), Expect = 1e-17
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 20/152 (13%)
Query: 183 ATGSD---VKSLPGITIDEKRIVSSTGALALNEVPKKLVVI---GAGYIGLEMGSVWARL 236
G++ +PG ++ + + K VVI ++ + A
Sbjct: 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATA 63
Query: 237 GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK------- 289
G EVT+V R L + ++ + ++ +
Sbjct: 64 GHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGS 123
Query: 290 -------LTLEPAAGGEKTILEADVVLVSAGR 314
A +E D +++ GR
Sbjct: 124 KRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 155
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 75.2 bits (184), Expect = 4e-17
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWA---RLGSEVTVVEFAADIVPSMDGE 256
++S A L+E PK+ + +G GYI +E ++ G +V + I+ D E
Sbjct: 4 LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE 63
Query: 257 IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314
+RKQ L + V + DG + + G + + DVV+++ GR
Sbjct: 64 LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVF--ESGAE--ADYDVVMLAIGR 117
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 75.2 bits (184), Expect = 4e-17
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250
+PG+ + + S G AL +P+++ V+GAGYIG+E+G V LG++ + E +
Sbjct: 2 IPGV----EYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL 57
Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310
PS D I + + + + V + DG LTLE G D ++
Sbjct: 58 PSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDG-SLTLELEDGRS---ETVDCLIW 113
Query: 311 SAG 313
+ G
Sbjct: 114 AIG 116
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 75.6 bits (184), Expect = 1e-16
Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 19/184 (10%)
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
+V++G G G+E+ G E + V + + +
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 274 LK--------TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDK 325
L+ + + + + L+ D ++++ G P L
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122
Query: 326 IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM----------LAHKAEEDGVACVEF 375
I +NE T+ P + A+GD A E
Sbjct: 123 AAGLQV-DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAI 181
Query: 376 LAGK 379
L GK
Sbjct: 182 LCGK 185
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 73.3 bits (179), Expect = 2e-16
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 13/125 (10%)
Query: 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVW---ARLGSEVTVVEFAA 247
+PGI + +SS A L E P++++ +G G+I +E ++ +VT+
Sbjct: 1 IPGI----EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56
Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEAD 306
I+ D +R++ + L ++ + K V+L+ DG K +T E G+K ++ D
Sbjct: 57 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFE---SGKK--MDFD 111
Query: 307 VVLVS 311
+V+++
Sbjct: 112 LVMMA 116
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 76.1 bits (186), Expect = 3e-16
Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 31/178 (17%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL----------NVGCIPS 90
S ++ ++IG G G A + A+LG T + +G L N+ P+
Sbjct: 2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPA 61
Query: 91 KALLHSSHMYHEAMHSF---------ASHGVKFSSVEVDLPAMMAQKDKAVSNLTR---- 137
L + H A+ + A G+ + E+ ++ V L
Sbjct: 62 HYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDK 121
Query: 138 -GIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGI 194
G + L + + V + + +V ++ +T + KN+I+ATG S+PG+
Sbjct: 122 YGAKILLR----SEVSQVERIQNDEKV-RFVLQVNSTQWQCKNLIVATGG--LSMPGL 172
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.9 bits (177), Expect = 6e-15
Identities = 38/295 (12%), Positives = 75/295 (25%), Gaps = 22/295 (7%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC---------LNVGCIPSK 91
+ DV+V+G G + + + G K I+K+ GG P
Sbjct: 3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 62
Query: 92 ALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYV 151
S + + + ++ + + K Y
Sbjct: 63 KEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYK 122
Query: 152 KGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALN 211
+ + S + E + I D+ + G+ +D+ + L
Sbjct: 123 VPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLG 182
Query: 212 EVPKKLVVIGAGYIGLE----------MGSVWARLGSEVTVVEFAADIVPSMDGEIRKQF 261
K+ + + + S + GE+ + F
Sbjct: 183 NSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGF 242
Query: 262 QRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316
R +ML T + V D K G +A +V+ P
Sbjct: 243 ARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGT---FKAPLVIADPTYFP 294
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 67.9 bits (165), Expect = 2e-14
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250
+ GI + +SS + E KK+ ++G+GYI +E+ +V RLG + + I+
Sbjct: 4 VKGI----ENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL 58
Query: 251 PSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV 310
D + + ++K + + VV + D L++ + G + D V+
Sbjct: 59 RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDK-NLSIHLSDG--RIYEHFDHVIY 115
Query: 311 S 311
Sbjct: 116 C 116
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 67.7 bits (164), Expect = 2e-14
Identities = 18/102 (17%), Positives = 38/102 (37%)
Query: 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
E +VV+G +E G + G ++ + D E R +++Q M+
Sbjct: 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGME 79
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
+ + V ++ +G + + +E D V + G
Sbjct: 80 IISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 66.7 bits (161), Expect = 2e-13
Identities = 25/176 (14%), Positives = 49/176 (27%), Gaps = 15/176 (8%)
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
+VV+GAG + + + G + + + D + + + +
Sbjct: 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 62
Query: 274 LKTKVVGVDL----SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL-DKIGV 328
+ V+ + A + L ++++ G P
Sbjct: 63 DCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122
Query: 329 ETDKMGRIPVNERFATNIPGVYAIGDVIPGPM----------LAHKAEEDGVACVE 374
I V+ T P VYA+GDV A+ G+A
Sbjct: 123 GLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVAR 178
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 42.0 bits (97), Expect = 4e-05
Identities = 26/195 (13%), Positives = 49/195 (25%), Gaps = 24/195 (12%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
VVV+G G + Q G +
Sbjct: 6 VVVLGAGLASVSFVAELRQAGYQGLITVV----------------------GDEAERPYD 43
Query: 106 SFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSV 165
+ + + + ++ V L F T G+ + + +
Sbjct: 44 RPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVL 103
Query: 166 DTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYI 225
T V+ + A G GI +D + AL +V ++ + +
Sbjct: 104 ATGAAPRAVLANDALARAAGLACDD--GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFE 161
Query: 226 GLEMGSVWARLGSEV 240
+E S G V
Sbjct: 162 RIETWSNAQNQGIAV 176
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 69.0 bits (167), Expect = 2e-13
Identities = 48/345 (13%), Positives = 94/345 (27%), Gaps = 18/345 (5%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC--LNVGCIPSKALLHSSHMYHE 102
+V V+GGG G A G +E LGG + + +S
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREP 61
Query: 103 AMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSE 162
A + A+ + PA + L + + E
Sbjct: 62 ATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGE 121
Query: 163 VSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGA 222
+ G G + + L++ LV +
Sbjct: 122 LFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMER 181
Query: 223 GYIGLEMGSVWARLGSEVTVVEFAADIVP-----SMDGEIRKQFQRSLEKQKMKFMLKTK 277
+ L +G++ A+ + + DG ++ + +
Sbjct: 182 EHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGAR 241
Query: 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR-------TPFTAGLGLDKIGVET 330
V G+ G +L +E G + L V+++A P L G+
Sbjct: 242 VEGLAREDGGWRLIIE--EHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYN 299
Query: 331 DK-MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE 374
+ R+ + +PG++ IG+ G L + +
Sbjct: 300 LGHLERVAAIDAALQRLPGLHLIGNAYKGVGLND-CIRNAAQLAD 343
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (156), Expect = 4e-13
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 214 PKKLVVIGAGYIGLEMGSVWAR----LGSEVTVVEFAADIVPS-MDGEIRKQFQRSLEKQ 268
K + +IG G++G E+ R LG+EV + + + + + ++
Sbjct: 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE 96
Query: 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
+K M V V +S + + L+ + +E D ++ + G
Sbjct: 97 GVKVMPNAIVQSVGVSSGKLLIKLK-----DGRKVETDHIVAAVG 136
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 65.5 bits (158), Expect = 3e-12
Identities = 45/350 (12%), Positives = 89/350 (25%), Gaps = 23/350 (6%)
Query: 33 LTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
G + S+ VV++G G G AA A G + T +E GG +
Sbjct: 20 ARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGW 79
Query: 93 LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVK 152
+ M H + + S K + +
Sbjct: 80 YANLGPMRLPEKHRIV----------REYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGE 129
Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
+ G + + + ++K I K ST + E
Sbjct: 130 VKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKE 189
Query: 213 V---PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK 269
P + +IG V + + + + K +
Sbjct: 190 GDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQ 249
Query: 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLV-----SAGRTPFTAGLGLD 324
K +V+ + + V + E + ++ AD V+V + F L
Sbjct: 250 DKVHFNAQVIKIQQNDQKVTVVYETLSKETPSV-TADYVIVCTTSRAVRLIKFNPPLLPK 308
Query: 325 K---IGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGV 370
K + ++ + +Y G+ + G+
Sbjct: 309 KAHALRSVFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGL 358
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.0 bits (157), Expect = 4e-12
Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 12/194 (6%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQ--LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMY 100
+DV+++G G G AA A+ LK IE A GG G + S ++
Sbjct: 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHL 109
Query: 101 HEAMHSF----ASHGVKFSSVEVDLPAMMAQKDKA----VSNLTRGIEGLFKKNKVTYVK 152
V + + ++++ + + N T + + +
Sbjct: 110 FLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEV 169
Query: 153 GYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNE 212
+ + ++ T G N+I G ++ I+S+TG
Sbjct: 170 TVAGVV--TNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFG 227
Query: 213 VPKKLVVIGAGYIG 226
++
Sbjct: 228 AFCAKRIVDIDQNQ 241
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (88), Expect = 0.002
Identities = 12/141 (8%), Positives = 28/141 (19%), Gaps = 3/141 (2%)
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
K L + A +V + + + + +
Sbjct: 139 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIEL 198
Query: 274 LKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333
K G + L +V + G+ K
Sbjct: 199 AGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGM---KGLDMNHAE 255
Query: 334 GRIPVNERFATNIPGVYAIGD 354
+ ++ + +Y G
Sbjct: 256 HDVVIHSGAYAGVDNMYFAGM 276
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 59.8 bits (143), Expect = 4e-11
Identities = 26/179 (14%), Positives = 47/179 (26%), Gaps = 14/179 (7%)
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
+K+VV+G G G EVT++E D R LE K
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61
Query: 272 FMLKTKVVGVDLSGDGVKLTL--EPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVE 329
+ + + + D +V+ G + +
Sbjct: 62 YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIA 121
Query: 330 -------TDKMGRIPVNERFATNIPGVYAIGDVI---PGPMLAHKAEEDGVACVEFLAG 378
+ + ++ G++ IGD P P + A G +
Sbjct: 122 QIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAVVV 180
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 58.2 bits (139), Expect = 1e-10
Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 14/172 (8%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVE----FAADIVPSMDGEIRKQFQRSLEKQKMK 271
K+V++G G G E+ ++ EVTV++ + L +
Sbjct: 2 KVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
+ K + + EK + D ++++ G + G+ T
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVD---LARRSGIHTG 117
Query: 332 KMGRIPVNERFATNIPGVYAIGDVIPGPM----LAHKAEEDGVACVEFLAGK 379
+ I +++ F T+ VYAIGD A A E + L G+
Sbjct: 118 RG--ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 167
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 56.2 bits (135), Expect = 2e-10
Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 190 SLPGI--TIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247
+ G + + I + E + ++IG G+IGLE+ A G V ++
Sbjct: 6 QIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLI-HRG 64
Query: 248 DIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADV 307
+ +D E+ + LE+ +KF L ++++ + +GV +E V
Sbjct: 65 AMFLGLDEELSNMIKDMLEETGVKFFLNSELLEAN--EEGVLT--------NSGFIEGKV 114
Query: 308 VLVSAG 313
+ + G
Sbjct: 115 KICAIG 120
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 56.3 bits (135), Expect = 2e-10
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 188 VKSLPGITIDEKRIVSSTGALALNEV---PKKLVVIGAGYIGLEMGSVWARLGSEVTVVE 244
+ +L G T+ + + A + +L+++G G IGLE+ + G V++VE
Sbjct: 1 LPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVE 60
Query: 245 FAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTIL 303
++ + + R Q + + V G V L + T +
Sbjct: 61 TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV--DGVVLLD-------DGTRI 111
Query: 304 EADVVLVSAG 313
AD+V+V G
Sbjct: 112 AADMVVVGIG 121
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 58.5 bits (140), Expect = 3e-10
Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 20/177 (11%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKAL----------- 93
DV+VIGGGP G +AAI AA+ G ++K LG G
Sbjct: 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKH 63
Query: 94 LHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG 153
+ + + + S ++ + E + + + ++ + +
Sbjct: 64 IPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDL 123
Query: 154 YGKFISPSEVSVDTIEGGNTVV---------KGKNIIIATGSDVKSLPGITIDEKRI 201
K + + V E G T + +++IA G G T D
Sbjct: 124 GVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAW 180
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 54.9 bits (131), Expect = 7e-10
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE-IRKQFQRSLEKQKMKF 272
+LVVIG GYIGLE+ + + VT+++ AA ++ + + ++ + +
Sbjct: 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDI 94
Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
T+V G ++S D K+T G + L AD+V+ G
Sbjct: 95 RTGTQVCGFEMSTDQQKVTAVLCEDGTR--LPADLVIAGIG 133
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 56.0 bits (133), Expect = 1e-09
Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 32/194 (16%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSM---------------DGEIRKQ 260
K++V+G+ + G E L + + + S +R
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61
Query: 261 FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320
+E + + T++ + V + GE+ + D +++S G PF
Sbjct: 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVK--DLVSGEERVENYDKLIISPGAVPFELD 119
Query: 321 LGLDKIGVETDKM-----GRIPVNERFATNIPGVYAIGDVIPGP----------MLAHKA 365
+ G I +E T+ P V+A+GD LA A
Sbjct: 120 GVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNA 179
Query: 366 EEDGVACVEFLAGK 379
+ G V+ L
Sbjct: 180 RKQGRFAVKNLEEP 193
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 56.2 bits (134), Expect = 3e-09
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 38 ASASDEN-DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC 82
ASA + DVVV+G G G+ AAI A G K IEK +GG
Sbjct: 10 ASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNA 55
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 55.2 bits (131), Expect = 3e-09
Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 46/221 (20%)
Query: 37 FASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHS 96
F +++ V+++G GP G AA + G + +GG V +P
Sbjct: 43 FRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSY 102
Query: 97 SHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK 156
Y E I L KKNK + + K
Sbjct: 103 HRDYRETQ----------------------------------ITKLLKKNKESQLALGQK 128
Query: 157 FISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGA---LALNEV 213
++ + +IIATG+ +L + + + +
Sbjct: 129 PMTADD---------VLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDA 179
Query: 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD 254
++ A + G + ++ + I
Sbjct: 180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAWGTP 220
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 54.4 bits (129), Expect = 3e-09
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 10/153 (6%)
Query: 217 LVVIGAGYIGLEMGSVWARLGSEVTVVE----------FAADIVPSMDGEIRKQFQRSLE 266
++++G+G G AR G ++ + S+ ++ +L+
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 267 KQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI 326
++ + + + + +
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123
Query: 327 GVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359
VE ++MG I ++ + TN+ GV+A GD P
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP 156
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 50.1 bits (118), Expect = 8e-08
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMYHEA 103
DV+++G GP G AAI +A+ G++T + +R G +++ S +
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62
Query: 104 MHSFASHGVKF 114
+ V
Sbjct: 63 KVHVDEYDVDV 73
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 55.8 bits (133), Expect = 4e-09
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
A S+ V+V+G G G+ A++ A + G ++K GG
Sbjct: 14 AGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 55.6 bits (133), Expect = 4e-09
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV---GCIPSKALLHSSHMYH 101
D +++G G G V A + +L K IEKR +GG G K H H
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62
Query: 102 EAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKN 146
+ + + + V+F+ A+ K + ++
Sbjct: 63 KYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVK 107
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 55.6 bits (133), Expect = 4e-09
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DV+V+G G G A + +LG IE G +GG P S Y +
Sbjct: 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVW-YWNRYPGARCDIESIEYCYSF 67
Query: 105 H 105
Sbjct: 68 S 68
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 53.6 bits (127), Expect = 6e-09
Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 3/164 (1%)
Query: 213 VPKKLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271
K+ ++GAG + S ARLG S++T+ E + V + QF+ + +
Sbjct: 3 YSAKIALLGAGPASISCASFLARLGYSDITIFE-KQEYVGGLSTSEIPQFRLPYDVVNFE 61
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD 331
L + + G + ++ +A + + + ++ +
Sbjct: 62 IELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFN 121
Query: 332 KMGRIPVNE-RFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVE 374
+ V+ T+ P V+A GD++ ++ DG
Sbjct: 122 RWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASW 165
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 42.4 bits (98), Expect = 4e-05
Identities = 13/84 (15%), Positives = 26/84 (30%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMH 105
+ ++G GP A A+LG I ++ G + + E M
Sbjct: 7 IALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMK 66
Query: 106 SFASHGVKFSSVEVDLPAMMAQKD 129
+ S+ + + K+
Sbjct: 67 DLGVKIICGKSLSENEITLNTLKE 90
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 8e-09
Identities = 17/63 (26%), Positives = 23/63 (36%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
DVVV+GGG G AA GL +E R +GG + K +
Sbjct: 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQ 60
Query: 105 HSF 107
+
Sbjct: 61 NRI 63
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 52.6 bits (125), Expect = 1e-08
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 1/151 (0%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
+ ++G GP + AAI AA+ LK E A +
Sbjct: 7 RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILG 66
Query: 105 HSFASHGVK-FSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEV 163
K + K S + + G E
Sbjct: 67 VELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEP 126
Query: 164 SVDTIEGGNTVVKGKNIIIATGSDVKSLPGI 194
+ ++GG + ++ G+ S+PG+
Sbjct: 127 ATKFLDGGVELDSDGYVVTKPGTTQTSVPGV 157
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 49.5 bits (117), Expect = 2e-07
Identities = 28/164 (17%), Positives = 46/164 (28%), Gaps = 19/164 (11%)
Query: 210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD--------------- 254
L +L ++G+G AR + + E +
Sbjct: 1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGF 60
Query: 255 --GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312
G + + KQ +F V K +A ++ + A
Sbjct: 61 PEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILA-DAVILAIGA 119
Query: 313 GRTPFTAGLGLDKIGVETDKMGRIPVNE-RFATNIPGVYAIGDV 355
GVE D G + T++PGV+A GDV
Sbjct: 120 VAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDV 163
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 53.4 bits (127), Expect = 2e-08
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 38 ASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGT 81
A + DVV+IG G G AA+ A G K +EK GG
Sbjct: 18 AGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 61
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Score = 51.6 bits (123), Expect = 5e-08
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK-RGALGGTCLNVGCIPSKALLHSSHMYHEA 103
V+++G G G A AQ G++ + + A+ P S +
Sbjct: 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPF----LPPKPPFPPGSLLERAY 59
Query: 104 MHSF 107
Sbjct: 60 DPKD 63
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 47.9 bits (113), Expect = 1e-07
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 207 ALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGE-IRKQFQRSL 265
++ +VVIG+GYIG+E +A+ G +VTV++ + + +
Sbjct: 23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 82
Query: 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311
E + V + G K+ +K +AD+V+V+
Sbjct: 83 EANNITIATGETVERYEGDGRVQKVVT------DKNAYDADLVVVA 122
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 50.1 bits (118), Expect = 3e-07
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
D +VIGGG G AA+ Q GL T +
Sbjct: 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS 42
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 47.9 bits (113), Expect = 6e-07
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 21/159 (13%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVE------------FAADIVPSMDGEIRKQFQ 262
KL+++G+G G AR + ++ + +
Sbjct: 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLM 65
Query: 263 RSLEKQKMKF---MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE---ADVVLVSAGRTP 316
+ + KF ++ + VDL +L + ++ A S
Sbjct: 66 ERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAI 125
Query: 317 FTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355
F L L+ ++ T+IPGV+A GDV
Sbjct: 126 FEGQLELENGYIKVQS---GIHGNATQTSIPGVFAAGDV 161
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (107), Expect = 3e-06
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAM 104
++++G GP GY AA+ AA+ L+ I GG + + + M
Sbjct: 7 KLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVENWPGDPNDLTGPLLM 65
Query: 105 HSFASHGVKF 114
H KF
Sbjct: 66 ERMHEHATKF 75
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 49.0 bits (116), Expect = 6e-07
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTC-----LNVGCIPSKALLHSSHMY 100
++++G G G V + A+ G + I++R +GG + H H
Sbjct: 5 ILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTD 64
Query: 101 HEAMHSFASHGVKF 114
+E + ++ + +
Sbjct: 65 NETVWNYVNKHAEM 78
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Score = 48.7 bits (115), Expect = 1e-06
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 41 SDENDVVVIGGGPGGYVAAIKAAQL------GLKTTCIEKRGALGGTCLNVGCIPSKAL 93
++E DVV++G GP G AA + QL L+ +EK +G L+ C+ +A
Sbjct: 30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAF 88
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.5 bits (109), Expect = 4e-06
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQL----GLKTTCIEKRGALGGTCL 83
E D+++IGGG G AA +AA GLK T +EK +
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV 65
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (108), Expect = 5e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
V++IG G G AA + G+ T +E R +GG
Sbjct: 7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (107), Expect = 7e-06
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCIPSKALLHSSHMYHEA 103
DV++IG G G A++ A + + K G T G I + S H
Sbjct: 9 DVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVE 67
Query: 104 MHSFASHG 111
A G
Sbjct: 68 DTLIAGAG 75
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Score = 45.1 bits (105), Expect = 9e-06
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86
DV+V+G G G A + A+ G+KT ++ + G
Sbjct: 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHG 46
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 45.2 bits (106), Expect = 9e-06
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80
E D VVIG G G AA++ +Q G + K
Sbjct: 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG-TCLNVGCIPSKALLHSSHMYHEA 103
+ VVIGGG G A A+ T E G T G + + A + +
Sbjct: 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDF 65
Query: 104 MHSFASH 110
Sbjct: 66 AMHSQRL 72
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Score = 43.8 bits (102), Expect = 2e-05
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 43 ENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGG 80
+ D+ ++G G G AAI AAQ K I K +
Sbjct: 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS 44
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 46 VVVIGGGPGGYVAAI--KAAQLGLKTTCIEKRGALGGT 81
+ +IG GP G V A A + + T E+RG+ GG
Sbjct: 7 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 44
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.4 bits (101), Expect = 3e-05
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75
V +IG GP G + + G+ +E++
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (99), Expect = 3e-05
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 4/146 (2%)
Query: 33 LTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKA 92
A + ++ V+G GP G AI AA G + T + +GG IP K
Sbjct: 33 TKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKE 92
Query: 93 LLHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKD---KAVSNLTRGIEGLFKKNKVT 149
+ + Y+ M +K + + + N + V
Sbjct: 93 EFYETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIPNRALAQPLIDSGKTVH 152
Query: 150 YVKGYGKFISPSEVSVDTIEGGNTVV 175
+ G + +G +
Sbjct: 153 LI-GGCDVAMELDARRAIAQGTRLAL 177
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 42.4 bits (98), Expect = 7e-05
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75
+ + V+GG G AA+ G+ E+
Sbjct: 5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERS 36
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 10/114 (8%)
Query: 209 ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268
L + ++V+GAG + + R G+ + F ++ + EK
Sbjct: 40 PLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF-VNIRAVPEEVELAKEEKC 98
Query: 269 KMKFMLKTKVVGVDLSGDGVKLTLEPAAG---------GEKTILEADVVLVSAG 313
+ L + V V + + L+ADVV+ + G
Sbjct: 99 EFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 6/148 (4%)
Query: 46 VVVIGGGPGGYVAA--IKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEA 103
+ V+G GP G+ A + EK+ G + + + + +
Sbjct: 4 ICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQT 63
Query: 104 MHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVT----YVKGYGKFIS 159
S V D+ Q L+ G E + + G +
Sbjct: 64 ARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNME 123
Query: 160 PSEVSVDTIEGGNTVVKGKNIIIATGSD 187
V V + V +G +I T
Sbjct: 124 GRVVDVPGLYCSGWVKRGPTGVITTTMT 151
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (88), Expect = 5e-04
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 47/162 (29%)
Query: 191 LPGITIDEKRIVSSTGAL-ALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVV------ 243
+ GI D +++S L V K+ +IG G IG + ++ G +
Sbjct: 7 IDGI--DHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCN 64
Query: 244 --------------------------------EFAADIVPSMDGEIRKQFQRSLEKQKMK 271
A+ + + +L + +K
Sbjct: 65 EWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVK 124
Query: 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313
+ +D DG+ + + GE +L D V++ AG
Sbjct: 125 MIPGVSYQKID--DDGLHVVIN----GETQVLAVDNVVICAG 160
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.3 bits (90), Expect = 6e-04
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 46 VVVIGGGPGGYVAAIKAAQLGLKT-------TCIEKRGALGGTCLNVGCIPSKALLHSSH 98
+ ++G GP + AA + T +E G + G P + S
Sbjct: 5 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG-LVRSGVAPDHPKIKSIS 63
Query: 99 MYHEAMH 105
E
Sbjct: 64 KQFEKTA 70
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Score = 39.5 bits (91), Expect = 6e-04
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
+ D +VIG G GG VAA++ Q G+ T +E
Sbjct: 3 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM 38
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.9 bits (89), Expect = 8e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75
D+++ G G GG A+ Q G+ + +
Sbjct: 3 DILIAGAGIGGLSCALALHQAGIGKVTLLES 33
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Score = 37.8 bits (86), Expect = 0.002
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL----GGTCLNVGCI----PSKALLHS 96
+V+IG G G A + G + +G L G T G + PSK +
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASF 62
Query: 97 SHMYHEAMHSFASHG 111
+ E + S G
Sbjct: 63 AKYTVEKLLSLTEDG 77
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Score = 37.8 bits (86), Expect = 0.002
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 45 DVVVIGGGPGGYVAAIKAAQL-----GLKTTCIEKR 75
DV+++G GP G +AA ++ LK I+KR
Sbjct: 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR 44
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Score = 37.7 bits (86), Expect = 0.003
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74
VVIG G G V+A++ + G++T +E
Sbjct: 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.9 bits (82), Expect = 0.003
Identities = 15/104 (14%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVV--EFAADIVPSMDGEIRKQFQRSLEKQKMKF 272
K++++IG G +GL G ++T+V + I+P I+ + Q + +F
Sbjct: 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRF 73
Query: 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTP 316
+ + + ++ + + +A ++++
Sbjct: 74 INPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDH 117
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.1 bits (82), Expect = 0.004
Identities = 10/58 (17%), Positives = 23/58 (39%)
Query: 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273
++ + G GY+G + G EV V+ ++ + ++ + LE +
Sbjct: 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 507 | |||
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 100.0 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 100.0 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 100.0 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 100.0 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.97 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.97 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.97 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.97 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.97 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.96 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.96 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.96 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.96 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.96 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.95 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.95 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.95 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.95 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.95 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.95 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.94 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.92 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.92 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.9 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.9 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.88 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.87 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.85 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.85 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.84 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.84 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.84 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.83 | |
| d1nhpa3 | 126 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.82 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.82 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.82 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.81 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.81 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.8 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.8 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.8 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.78 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.78 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.76 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.76 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.75 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.75 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.72 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.72 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.71 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.65 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.64 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.63 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.63 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.63 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.63 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.6 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.56 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.53 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.5 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.46 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.44 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.43 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.42 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.39 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.37 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 99.34 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.34 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.31 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.28 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.28 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.26 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.25 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.25 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.24 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.22 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.2 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.19 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.18 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 99.18 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.16 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 99.1 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.1 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.1 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 99.07 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.06 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.05 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.04 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.04 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.04 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.01 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.99 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.98 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.97 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.96 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.95 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.94 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.9 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.9 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.89 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.86 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.85 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.84 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.81 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.8 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.77 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.76 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.75 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.74 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.74 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.74 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.73 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.72 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.7 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.68 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.67 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.65 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.65 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.64 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.61 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.59 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.58 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.56 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.56 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.56 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.55 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.41 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.41 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.37 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.35 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.33 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.3 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.25 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.23 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.19 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.12 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.09 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.07 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.98 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.94 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.9 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.87 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 97.86 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.86 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.81 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.74 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.71 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.65 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.61 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.59 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.51 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.48 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.47 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 97.44 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.43 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.41 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.35 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.32 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.31 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.29 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 97.27 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.27 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 97.26 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 97.13 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.09 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 97.06 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 97.01 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 96.99 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 96.88 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.81 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.75 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.75 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 96.44 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.38 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.28 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.28 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.28 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 96.18 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.16 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.09 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.04 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.98 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.97 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.95 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.74 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.71 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.68 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.63 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 95.61 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.52 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.51 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.32 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.3 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.25 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 95.05 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 95.05 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 95.04 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 95.03 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.98 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.96 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.92 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.82 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.81 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.79 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 94.74 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.73 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.6 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.58 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.39 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 94.33 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.28 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.24 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.09 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.07 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.06 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.99 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 93.96 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 93.88 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.6 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.6 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.58 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.55 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 93.48 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.42 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.41 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.38 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 93.0 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 92.71 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.57 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 92.48 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 92.47 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 92.44 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 92.27 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 92.18 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.06 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.9 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 91.76 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 91.74 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.73 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.72 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.62 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.56 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.55 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.54 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 91.46 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 91.27 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 91.12 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 90.98 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.97 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 90.89 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 90.84 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 90.76 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 90.7 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.6 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.51 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.43 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.33 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 90.26 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 90.13 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.04 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 89.88 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 89.67 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 89.62 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 89.59 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 89.44 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 89.39 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 89.24 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 89.19 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 89.18 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 89.03 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.93 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 88.87 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 88.73 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.58 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 88.38 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 88.11 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 88.07 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 88.02 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 88.02 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 88.0 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 87.89 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 87.87 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 87.81 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.78 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 87.68 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.58 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 87.58 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.38 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 87.2 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 86.94 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 86.79 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 86.67 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 86.61 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 86.53 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 86.45 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 86.06 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 85.83 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 85.82 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 85.23 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 85.19 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 85.03 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 85.01 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 84.04 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 83.79 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 83.75 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 83.7 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 83.69 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 83.45 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 83.05 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 83.03 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 82.26 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 82.16 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 82.05 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 81.94 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 81.94 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 81.74 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 81.67 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 81.53 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 81.45 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 81.42 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 81.33 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 80.97 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 80.91 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.85 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 80.71 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.7 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.48 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.38 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.34 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 80.33 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 80.28 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 80.27 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 80.1 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 80.1 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 80.01 |
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=100.00 E-value=1.7e-34 Score=263.05 Aligned_cols=218 Identities=89% Similarity=1.364 Sum_probs=195.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||+||||||||++||..++++|.+|+|||+++.+||.|.+.+|+|++.+.............+...++........+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 81 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL 81 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecH
Confidence 56999999999999999999999999999999999999999999999999988888887777777777888777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
.....++......+...+..++...+++++.+.+.+.++..............+.+|++|+|||++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~------------- 148 (221)
T d1dxla1 82 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV------------- 148 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE-------------
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc-------------
Confidence 8888888888888888888888999999999999998888887776666668899999999999753
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
T Consensus 149 -------------------------------------------------------------------------------- 148 (221)
T d1dxla1 149 -------------------------------------------------------------------------------- 148 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCc
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPML 361 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~ 361 (507)
.|+.|+++.+.++++|++++++|+|.||+++|||+|+|||+|||+++|.+
T Consensus 149 ------------------------------~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~l 198 (221)
T d1dxla1 149 ------------------------------KGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPML 198 (221)
T ss_dssp ------------------------------CCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCCC
T ss_pred ------------------------------cCccccCCCCChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCccc
Confidence 26678998888899999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHcCCCCC
Q 010573 362 AHKAEEDGVACVEFLAGKHGH 382 (507)
Q Consensus 362 ~~~A~~~g~~aa~~i~~~~~~ 382 (507)
++.|..+|+.||++|+|+..+
T Consensus 199 ~~~A~~~g~~aa~~i~g~~~~ 219 (221)
T d1dxla1 199 AHKAEEDGVACVEYLAGKVGH 219 (221)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999988654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2.4e-33 Score=255.78 Aligned_cols=220 Identities=47% Similarity=0.767 Sum_probs=189.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+||||||||++||.++++.|++|+|||+ ..+||+|.+.+|+|++.+.......... .....++.......+++.
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk-~~~GG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK-GNLGGVCLNVGCIPSKALISASHRYEQA-KHSEEMGIKAENVTIDFA 80 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHTSHHHHHHHHHHHHHHHHH-HTCGGGTEECCSCEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-CCCCcceeccccccccccccccchhhhh-hhhhhhcccchhheeeHH
Confidence 58999999999999999999999999999999 6789999999999999887666554433 333444555556678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
.+..+....+..+...++.+++..+++++.+++.+.+.....+....+ ...+..+.+|+|+|..|..
T Consensus 81 ~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~-~~~~~~~~iiIa~g~~p~~------------ 147 (223)
T d1ebda1 81 KVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDS-AQTYTFKNAIIATGSRPIE------------ 147 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTE-EEEEECSEEEECCCEEECC------------
T ss_pred HHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceecccc-ceEEecccEEEEcCCCccc------------
Confidence 999999999999988888899999999999999998888887765443 4788999999999876641
Q ss_pred cchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 203 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
T Consensus 148 -------------------------------------------------------------------------------- 147 (223)
T d1ebda1 148 -------------------------------------------------------------------------------- 147 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcH
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA 362 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~ 362 (507)
++|++|+++.|.++.+|++++++|+|.||+++|||+|+|||+|||++++.++
T Consensus 148 ----------------------------~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~~~ 199 (223)
T d1ebda1 148 ----------------------------LVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPALA 199 (223)
T ss_dssp ----------------------------BSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCCCH
T ss_pred ----------------------------cccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcccH
Confidence 1477899998888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCC
Q 010573 363 HKAEEDGVACVEFLAGKHGHVDY 385 (507)
Q Consensus 363 ~~A~~~g~~aa~~i~~~~~~~~~ 385 (507)
+.|..||+.||++|+|++.+++|
T Consensus 200 ~~A~~~g~~aa~~i~g~~~~~dy 222 (223)
T d1ebda1 200 HKASYEGKVAAEAIAGHPSAVDY 222 (223)
T ss_dssp HHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999998766665
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.3e-33 Score=257.19 Aligned_cols=216 Identities=26% Similarity=0.468 Sum_probs=178.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCC---CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc--cCccc
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG---LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK--FSSVE 118 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g---~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~ 118 (507)
.+|+||||||||++||.++++++ ++|+|||+ ..+||+|+++||+|+|.++.....++.+.+ ...+|+. ..+..
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln~GciPsK~ll~~a~~~~~~~~-~~~~G~~i~~~~~~ 79 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVLDDCVPSKTFIASTGLRTELRR-APHLGFHIDFDDAK 79 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHHTSHHHHHHHHHHHHHHHHHTT-TTTTTBC------C
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeecccccccEEEEeecchhhhhhh-hhhcCCcccccCce
Confidence 58999999999999999988765 67999998 789999999999999999888888776543 4555654 34567
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecC------CEEEEEccCCceEEEEeCeEEEccCCCCCCCC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISP------SEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP 192 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~------~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~p 192 (507)
++|..+..+.+.....+...+...++..+|+++.+.+.+++. ..+.+...+|+..++.+|.+|+|||..|..+|
T Consensus 80 ~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~ 159 (233)
T d1xdia1 80 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP 159 (233)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred eeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCccccccc
Confidence 899999999888888888888889999999999998888765 34666677777788999999999998775432
Q ss_pred CCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 193 GITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
.
T Consensus 160 ~------------------------------------------------------------------------------- 160 (233)
T d1xdia1 160 S------------------------------------------------------------------------------- 160 (233)
T ss_dssp G-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred EcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEe
Q 010573 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAI 352 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~ 352 (507)
|..|+.+.+.++..+++++++|+|.||++|||++|+|||+
T Consensus 161 ----------------------------------------~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~ 200 (233)
T d1xdia1 161 ----------------------------------------GSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAA 200 (233)
T ss_dssp ----------------------------------------CEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEEC
T ss_pred ----------------------------------------cccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEE
Confidence 2233444455778889999999999999999999999999
Q ss_pred cCCCCCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 353 GDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 353 GD~a~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
|||++.+++++.|..+|++||.|++|+.
T Consensus 201 GDv~~~~~l~~~A~~~g~~aa~~~~g~~ 228 (233)
T d1xdia1 201 GDCTGLLPLASVAAMQGRIAMYHALGEG 228 (233)
T ss_dssp SGGGTSCSCHHHHHHHHHHHHHHHTTCC
T ss_pred EEeCCCchhHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999864
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-32 Score=247.25 Aligned_cols=214 Identities=30% Similarity=0.475 Sum_probs=184.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
.||++||||||||++||.++++.|.+|+|||+ ..+||.|.+.+|+|++.+......+...... ..+........+++.
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH-ADYGFPSCEGKFNWR 80 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHTT-GGGTSCCCCCCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCccccchhhhhhhhhhHHHHHHHHhhh-hhccccccccchhhh
Confidence 49999999999999999999999999999998 7899999999999999998887776655443 334444455678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
....+.+..+..+.......++..+|+++.+.+.+.+.+..++...+ ..+.++.+++|||+.|..++
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~---~~~~~~~~~iatG~~p~vp~---------- 147 (221)
T d3grsa1 81 VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG---KKYTAPHILIATGGMPSTPH---------- 147 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETT---EEEECSCEEECCCEEECCCC----------
T ss_pred hhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeec---cccccceeEEecCccccCCC----------
Confidence 99999888888888888888999999999999888777666555433 67899999999999876432
Q ss_pred cchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 203 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
T Consensus 148 -------------------------------------------------------------------------------- 147 (221)
T d3grsa1 148 -------------------------------------------------------------------------------- 147 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcH
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA 362 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~ 362 (507)
|+.|+++.|.++..|++++++|+|.||+++|||+|||||+|||++.++++
T Consensus 148 ------------------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~l~ 197 (221)
T d3grsa1 148 ------------------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLT 197 (221)
T ss_dssp ------------------------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSCCH
T ss_pred ------------------------------ccccCCCCcCchhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcCcH
Confidence 24578888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCC
Q 010573 363 HKAEEDGVACVEFLAGKHG 381 (507)
Q Consensus 363 ~~A~~~g~~aa~~i~~~~~ 381 (507)
+.|..+|+.||++|++...
T Consensus 198 ~~A~~~G~~aa~~~~~~~~ 216 (221)
T d3grsa1 198 PVAIAAGRKLAHRLFEYKE 216 (221)
T ss_dssp HHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 9999999999999997653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=1.8e-31 Score=245.28 Aligned_cols=218 Identities=32% Similarity=0.539 Sum_probs=182.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC--------CCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK 113 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~--------~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~ 113 (507)
.+|||+||||||||++||.++++.|++|+|||+. ..+||.|.+.+|+|++.+............ ...+|+.
T Consensus 2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~-~~~~gi~ 80 (235)
T d1h6va1 2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWK 80 (235)
T ss_dssp CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH-TTTTTBC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhh-hhccccc
Confidence 4699999999999999999999999999999964 357999999999999998877766655444 4667776
Q ss_pred cC-ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCC
Q 010573 114 FS-SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP 192 (507)
Q Consensus 114 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~p 192 (507)
.. ....++..+..+....+..+...++..+++.+|+++.+...+.+.+...+....+....+.++.+++++|++|..++
T Consensus 81 ~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~ 160 (235)
T d1h6va1 81 LEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLG 160 (235)
T ss_dssp CCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCS
T ss_pred cccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEE
Confidence 54 45789999999999999999888888999999999999999999999999888887888999999999999986543
Q ss_pred CCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 193 GITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 193 g~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
.
T Consensus 161 i------------------------------------------------------------------------------- 161 (235)
T d1h6va1 161 I------------------------------------------------------------------------------- 161 (235)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
Confidence 1
Q ss_pred EcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecC-CCCeecCCCCCCCCCCeEE
Q 010573 273 MLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDK-MGRIPVNERFATNIPGVYA 351 (507)
Q Consensus 273 ~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~-~G~i~Vd~~~~t~~~~IyA 351 (507)
..+++..+.++..|++++. .|+|.||++||||+|+|||
T Consensus 162 -----------------------------------------~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA 200 (235)
T d1h6va1 162 -----------------------------------------RDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYA 200 (235)
T ss_dssp -----------------------------------------EEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEE
T ss_pred -----------------------------------------eeccceeeccccceeeeccccCccccCCccccCCCCEEE
Confidence 0111112235566777775 5899999999999999999
Q ss_pred ecCCCC-CCCcHhHHHHHHHHHHHHHcCCC
Q 010573 352 IGDVIP-GPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 352 ~GD~a~-~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
+|||+. .+++++.|+.+|+.||++|+|..
T Consensus 201 ~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~ 230 (235)
T d1h6va1 201 IGDILEGKLELTPVAIQAGRLLAQRLYGGS 230 (235)
T ss_dssp CGGGBTTSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred EEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 999985 56799999999999999999754
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-30 Score=239.49 Aligned_cols=229 Identities=49% Similarity=0.869 Sum_probs=183.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccC-ccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS-SVE 118 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 118 (507)
|.++|||+||||||||++||.+|++.|++|+|||+++.+||+|.+.+|+|++.+......+..+......+|+... ...
T Consensus 2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~ 81 (233)
T d1v59a1 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIK 81 (233)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEE
T ss_pred CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeecee
Confidence 4567999999999999999999999999999999999999999999999999998888888888777788888754 456
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDE 198 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~ 198 (507)
.++.....+.......+......+.+..+++++.+++.+++++...+....+ ...... .
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~~~~---------------~~~~~~------~ 140 (233)
T d1v59a1 82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDG---------------LEGTVK------E 140 (233)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTT---------------CTTCCS------S
T ss_pred cchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEeccc---------------ccceee------e
Confidence 7788888888888888888888888999999999999888877666543222 000000 0
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..... .++++
T Consensus 141 ~~~~~----------~~~i~------------------------------------------------------------ 150 (233)
T d1v59a1 141 DHILD----------VKNII------------------------------------------------------------ 150 (233)
T ss_dssp CEEEE----------EEEEE------------------------------------------------------------
T ss_pred eeecc----------CCeEE------------------------------------------------------------
Confidence 00000 00000
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~ 358 (507)
....+..+.++|++|+++.|.++..|++++++|+|.||++++|++|+|||+||++.+
T Consensus 151 -----------------------i~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g 207 (233)
T d1v59a1 151 -----------------------VATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFG 207 (233)
T ss_dssp -----------------------ECCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSS
T ss_pred -----------------------EecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCccc
Confidence 001123345789999999888899999999999999999999999999999999999
Q ss_pred CCcHhHHHHHHHHHHHHHcCCCCC
Q 010573 359 PMLAHKAEEDGVACVEFLAGKHGH 382 (507)
Q Consensus 359 ~~~~~~A~~~g~~aa~~i~~~~~~ 382 (507)
+.+++.|..+|+.||++|+++..+
T Consensus 208 ~~l~~~a~~~G~~aa~~i~~~~~~ 231 (233)
T d1v59a1 208 PMLAHKAEEEGIAAVEMLKTGHGH 231 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999877544
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.97 E-value=1.5e-30 Score=236.36 Aligned_cols=213 Identities=41% Similarity=0.689 Sum_probs=174.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhh--hhCCcccCcccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSF--ASHGVKFSSVEV 119 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~ 119 (507)
.+||++||||||||++||..++++|.+|+|||+ +.+||+|.+.+|+|++.+......++...+.. ...++.......
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~-~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 82 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRL 82 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCC
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEec-CCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEecccee
Confidence 358999999999999999999999999999998 57999999999999999988877776665432 334556666778
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEK 199 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~ 199 (507)
++.....+....+.........+....+++++.+...+.+....... ...+.+|++|+|||++|..+|...
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~-----~~~i~a~~viiAtG~~p~~lp~~~---- 153 (220)
T d1lvla1 83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVD-----GQRIQCEHLLLATGSSSVELPRRP---- 153 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEET-----TEEEECSEEEECCCEEECCBTEEE----
T ss_pred hHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCccccccc-----ceeEeeceeeEcCCCCcccccccc----
Confidence 89999999888888888888888999999999999888887765542 278999999999999987654110
Q ss_pred eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 200 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
T Consensus 154 -------------------------------------------------------------------------------- 153 (220)
T d1lvla1 154 -------------------------------------------------------------------------------- 153 (220)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~ 359 (507)
......+...+++++ +|+|.||+++||++|+|||+|||++.|
T Consensus 154 -------------------------------------~~~~~~~~~~~~~~~-~g~i~vd~~~~T~~~~I~A~GDv~~~~ 195 (220)
T d1lvla1 154 -------------------------------------RTKGFNLECLDLKMN-GAAIAIDERCQTSMHNVWAIGDVAGEP 195 (220)
T ss_dssp -------------------------------------CCSSSSGGGSCCCEE-TTEECCCTTCBCSSTTEEECGGGGCSS
T ss_pred -------------------------------------cccCCcceeeehhhc-CCcccccchhhcCCCCEEEEEEeCCcc
Confidence 000111223334444 378999999999999999999999999
Q ss_pred CcHhHHHHHHHHHHHHHcCCCCC
Q 010573 360 MLAHKAEEDGVACVEFLAGKHGH 382 (507)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~~~~~~ 382 (507)
.+++.|..+|++||++|+|+..+
T Consensus 196 ~l~~~a~~~g~~~a~~i~G~~~~ 218 (220)
T d1lvla1 196 MLAHRAMAQGEMVAEIIAGKARR 218 (220)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCC
T ss_pred cchhhhhhhHHHHHHHHcCCCCC
Confidence 99999999999999999998654
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.97 E-value=2.5e-30 Score=236.55 Aligned_cols=221 Identities=52% Similarity=0.818 Sum_probs=187.9
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC------CCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG------ALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFS 115 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~------~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 115 (507)
+.|||+||||||||++||.+|+|.|++|+|||+.. .+||.|.+.+|.|++.+......+..........++...
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 81 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccC
Confidence 57999999999999999999999999999999843 568999999999999888777777777766666788777
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCc
Q 010573 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGIT 195 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~ 195 (507)
....++..+..+.......+...+..+++..+|+++.+...+.+...............+.++.+++|||++|..+|..
T Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~- 160 (229)
T d3lada1 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRR- 160 (229)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTEE-
T ss_pred cceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCccccccccc-
Confidence 7889999999999888888888888888999999999999988888888877777678899999999999987543310
Q ss_pred cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
T Consensus 161 -------------------------------------------------------------------------------- 160 (229)
T d3lada1 161 -------------------------------------------------------------------------------- 160 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCC
Q 010573 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDV 355 (507)
Q Consensus 276 ~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~ 355 (507)
+++..+.++..|++++++|+|+||+++||++|+|||+|||
T Consensus 161 ----------------------------------------~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv 200 (229)
T d3lada1 161 ----------------------------------------PVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDV 200 (229)
T ss_dssp ----------------------------------------ECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGG
T ss_pred ----------------------------------------ccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCC
Confidence 0000112456688899999999999999999999999999
Q ss_pred CCCCCcHhHHHHHHHHHHHHHcCCCCCC
Q 010573 356 IPGPMLAHKAEEDGVACVEFLAGKHGHV 383 (507)
Q Consensus 356 a~~~~~~~~A~~~g~~aa~~i~~~~~~~ 383 (507)
+.++.+++.|..+|+.||++|+|++.++
T Consensus 201 ~~g~~l~~~A~~~G~~aa~~i~g~~~~~ 228 (229)
T d3lada1 201 VRGAMLAHKASEEGVVVAERIAGHKAQM 228 (229)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999887553
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.97 E-value=1.6e-29 Score=232.81 Aligned_cols=218 Identities=34% Similarity=0.517 Sum_probs=177.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCCC--------CCceeccccccchhhhhhhhHHHHHHHhhhhhCCc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGA--------LGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~--------~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 112 (507)
++|||+||||||||++||.++++.|. +|+|+|+... +||+|.+.+|+|++.+......+..+. ....+|+
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~-~~~~~Gi 80 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIR-ESAGFGW 80 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTE
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhcccccccccccc-ccccccc
Confidence 57999999999999999999999985 6999998553 799999999999999998888776554 4566777
Q ss_pred ccC--ccccChHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEEeEEEEecCCEEEEEcc----CCceEEEEeCeEEEccC
Q 010573 113 KFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKN-KVTYVKGYGKFISPSEVSVDTI----EGGNTVVKGKNIIIATG 185 (507)
Q Consensus 113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~----~g~~~~~~~d~lvlAtG 185 (507)
... ...++|..+..+++..+..+...++..+.+. +++++.+.+.+.+......... .+..+.+.+|.++++||
T Consensus 81 ~~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~G 160 (240)
T d1feca1 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATG 160 (240)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred cccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEecC
Confidence 643 4568999999999998888887777766554 7999999988887777655432 33457889999999999
Q ss_pred CCCCCCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHH
Q 010573 186 SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL 265 (507)
Q Consensus 186 ~~p~~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l 265 (507)
++|...+. .
T Consensus 161 ~~p~~~~~---------------------------------------------~-------------------------- 169 (240)
T d1feca1 161 SWPQHLGI---------------------------------------------E-------------------------- 169 (240)
T ss_dssp EEECCCCS---------------------------------------------B--------------------------
T ss_pred CceeEccc---------------------------------------------c--------------------------
Confidence 88742110 0
Q ss_pred HhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCC
Q 010573 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATN 345 (507)
Q Consensus 266 ~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~ 345 (507)
.|+...|.++..|++++++|+|.||+++|||
T Consensus 170 -------------------------------------------------~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts 200 (240)
T d1feca1 170 -------------------------------------------------VPRSQTLQLEKAGVEVAKNGAIKVDAYSKTN 200 (240)
T ss_dssp -------------------------------------------------EESCTTSCGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred -------------------------------------------------ccccCCCCccccCeEECCCCcEEcCcccCcC
Confidence 0222234477889999999999999999999
Q ss_pred CCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 346 IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 346 ~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
+|+|||+|||++.+++++.|..||+.||++++++.
T Consensus 201 ~~~iyA~GDv~~~~~~~~~A~~eg~~aa~~~~~~~ 235 (240)
T d1feca1 201 VDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 235 (240)
T ss_dssp STTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEEECCCCccchhhHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999864
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.96 E-value=1e-28 Score=225.60 Aligned_cols=223 Identities=41% Similarity=0.661 Sum_probs=168.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||+||||||||++||.+|++.|++|+|||+.+.+||.|.+.+|+|++.+........... ....+|.......+.+
T Consensus 5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~-~~~~~G~~~~~~~~~~ 83 (229)
T d1ojta1 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVR-HLAANGIKYPEPELDI 83 (229)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHH-HGGGGTCCCCCCCCCH
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhh-hHhhcCCcccCCcccH
Confidence 469999999999999999999999999999999899999999999999998877776655443 3466777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceE
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRI 201 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~ 201 (507)
..+..+++.....+...+..+.....++++.+...+.++......... .
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~-----~-------------------------- 132 (229)
T d1ojta1 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTA-----G-------------------------- 132 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEE-----E--------------------------
T ss_pred HHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccc-----c--------------------------
Confidence 888888888888887777778888888887776554433222111000 0
Q ss_pred ecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 202 VSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 202 ~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
T Consensus 133 -------------------------------------------------------------------------------- 132 (229)
T d1ojta1 133 -------------------------------------------------------------------------------- 132 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCE-EEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADV-VLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~-vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
.......... ......++. ++.+.++.|++..+.++..|++++++|+|+||++||||+|||||+|||++.|+
T Consensus 133 -~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~ 205 (229)
T d1ojta1 133 -DAYEQAAPTG------EKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 205 (229)
T ss_dssp -EETTEEEEEE------EEEEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC
T ss_pred -cccccccccc------cccceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc
Confidence 0000000000 112233333 34444556776666688999999999999999999999999999999999999
Q ss_pred cHhHHHHHHHHHHHHHcCCCCCC
Q 010573 361 LAHKAEEDGVACVEFLAGKHGHV 383 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~~~~~~ 383 (507)
+++.|..||++||+||+|+...+
T Consensus 206 l~~~A~~eG~~Aa~~i~G~~~~~ 228 (229)
T d1ojta1 206 LAHKAVHEGHVAAENCAGHKAYF 228 (229)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCC
T ss_pred hHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986543
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.96 E-value=5e-29 Score=232.24 Aligned_cols=216 Identities=23% Similarity=0.327 Sum_probs=159.5
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcc-cCccc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVK-FSSVE 118 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~ 118 (507)
..++||+|||||||+|+.||..+++.|.+|++||+.+.+||+|.+.+|+|++.+....+............+.. .....
T Consensus 39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 118 (261)
T d1mo9a1 39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKV 118 (261)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCC
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhcccccccccc
Confidence 34679999999999999999999999999999999999999999999999999988877766655433333332 23345
Q ss_pred cChHHHHHHHHHHHHHHHHHH-HHHHHhC-CcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCcc
Q 010573 119 VDLPAMMAQKDKAVSNLTRGI-EGLFKKN-KVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITI 196 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~ 196 (507)
.++.................. ....... ...++.+.+.+++.+.+.+ ++ +.+++|.+++|||++|..++....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~---~g--~~i~ad~viiAtG~~P~~~~i~~~ 193 (261)
T d1mo9a1 119 VGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA---AG--KVFKAKNLILAVGAGPGTLDVPEQ 193 (261)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEE---TT--EEEEBSCEEECCCEECCCCCSTCE
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeeccccc---cc--ceEeeeeeeeccCCCCCcCccccc
Confidence 667766655554444433221 1223333 4455666777888777654 33 778899999999988854321100
Q ss_pred CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
. ...+++
T Consensus 194 ~---------------------------~~~~l~---------------------------------------------- 200 (261)
T d1mo9a1 194 P---------------------------RSAELA---------------------------------------------- 200 (261)
T ss_dssp E---------------------------CCHHHH----------------------------------------------
T ss_pred c---------------------------cccccc----------------------------------------------
Confidence 0 000111
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCC
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a 356 (507)
+.+|++++++|+|.||++||||+|+|||+|||+
T Consensus 201 -----------------------------------------------~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~ 233 (261)
T d1mo9a1 201 -----------------------------------------------KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLI 233 (261)
T ss_dssp -----------------------------------------------HHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGG
T ss_pred -----------------------------------------------cceeeeeccCCEEEeCCCcccCCCCEEEEEEeC
Confidence 223577888999999999999999999999999
Q ss_pred CCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 357 PGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 357 ~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
++|++++.|..||++||.||+|++
T Consensus 234 ~~~~l~~~A~~~G~~aa~~i~G~k 257 (261)
T d1mo9a1 234 GGPMEMFKARKSGCYAARNVMGEK 257 (261)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTTCC
T ss_pred CCcccHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999975
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.5e-28 Score=198.31 Aligned_cols=122 Identities=66% Similarity=1.070 Sum_probs=118.5
Q ss_pred CCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHH
Q 010573 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464 (507)
Q Consensus 385 ~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~ 464 (507)
|+.+|+++|++|++++||+||++|++.++++.+.++++....++...+++.||+|+++|+++++|||++++|++|.|+|+
T Consensus 1 Y~~iP~~vft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~elI~ 80 (123)
T d1v59a3 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIA 80 (123)
T ss_dssp TTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCCCCEEeecCCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHHHH
Confidence 67899999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 465 EAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 465 ~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
.++++|++++|+++|.+++++|||++|++.++++.+.+++.|
T Consensus 81 ~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~ih 122 (123)
T d1v59a3 81 EAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKAIH 122 (123)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999887
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.96 E-value=1.6e-28 Score=198.79 Aligned_cols=123 Identities=48% Similarity=0.869 Sum_probs=119.2
Q ss_pred CCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHH
Q 010573 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464 (507)
Q Consensus 385 ~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~ 464 (507)
|+.+|+++|++|++++||+||+++++.++++++..+++....++...+++.||+|+++|+++++|||+|++|++|.|+|+
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~elI~ 80 (124)
T d3lada3 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQ 80 (124)
T ss_dssp TTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCcCCeEecCcCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHHHH
Confidence 57899999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCCC
Q 010573 465 EAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507 (507)
Q Consensus 465 ~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 507 (507)
.++.+|++++|++||.+++++|||++|++.++++.+.+++.|+
T Consensus 81 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~ih~ 123 (124)
T d3lada3 81 QGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIHV 123 (124)
T ss_dssp HHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999999884
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.96 E-value=2.4e-28 Score=197.17 Aligned_cols=123 Identities=90% Similarity=1.304 Sum_probs=119.0
Q ss_pred CCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHH
Q 010573 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIH 464 (507)
Q Consensus 385 ~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~ 464 (507)
|+.+|+++|++|++++||+||++|++.|+++.+..+++....++...+++.||+|+++|+++++|||+|++|++|.|+|+
T Consensus 1 Y~~iP~~vft~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~elI~ 80 (123)
T d1dxla3 1 YDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIH 80 (123)
T ss_dssp TTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCCCCEEeecCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHHHH
Confidence 57799999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCCC
Q 010573 465 EAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507 (507)
Q Consensus 465 ~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 507 (507)
.+++||++++|++||.+++++|||++|++.++++.+.+++.|.
T Consensus 81 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~ih~ 123 (123)
T d1dxla3 81 EAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIHI 123 (123)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999999999998874
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.95 E-value=4.2e-28 Score=195.54 Aligned_cols=122 Identities=36% Similarity=0.603 Sum_probs=118.2
Q ss_pred CCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHH
Q 010573 386 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHE 465 (507)
Q Consensus 386 ~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~ 465 (507)
..+|+++|++|++++||+||++|++.|+++.+.++++....++...+++.||+|+++|+++++|||++++|++|.|+|+.
T Consensus 2 ~~iP~vvft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~~ 81 (123)
T d1lvla3 2 AAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTA 81 (123)
T ss_dssp SCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHH
T ss_pred CCCCEEEeCCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCCC
Q 010573 466 AVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 507 (507)
Q Consensus 466 ~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 507 (507)
++++|++++|++||.+++++|||++|++.++++.+.+++.|+
T Consensus 82 ~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~~h~ 123 (123)
T d1lvla3 82 FAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI 123 (123)
T ss_dssp HHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999999885
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.95 E-value=2.9e-27 Score=217.36 Aligned_cols=217 Identities=32% Similarity=0.519 Sum_probs=165.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecC--------CCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR--------GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGV 112 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~--------~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~ 112 (507)
++|||+||||||||++||.++++.|. +|+|+|+. +.+||+|.+.+|+|++.+......+..... ...+|.
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~-~~~~G~ 80 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRE-SAGFGW 80 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTE
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHH-HHhcCC
Confidence 57999999999999999999999875 68899874 368999999999999999988877765543 455665
Q ss_pred ccC--ccccChHHHHHHHHHHHHHHHHHHHHHH-HhCCcEEEEeEEEEecCCEEEEEccC----CceEEEEeCeEEEccC
Q 010573 113 KFS--SVEVDLPAMMAQKDKAVSNLTRGIEGLF-KKNKVTYVKGYGKFISPSEVSVDTIE----GGNTVVKGKNIIIATG 185 (507)
Q Consensus 113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~d~~~~~v~~~~----g~~~~~~~d~lvlAtG 185 (507)
... ....+|..+..+++..+..........+ ...+++++.+.+.+............ .....+.++.+++++|
T Consensus 81 ~~~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~ 160 (238)
T d1aoga1 81 EFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASG 160 (238)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCC
T ss_pred cccCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccccccccccccccccccccccccccceeeecc
Confidence 443 4567899999999988888877776666 57799999988777665554443211 1123445555555544
Q ss_pred CCCCCCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHH
Q 010573 186 SDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSL 265 (507)
Q Consensus 186 ~~p~~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l 265 (507)
..|..
T Consensus 161 ~~~~~--------------------------------------------------------------------------- 165 (238)
T d1aoga1 161 SWPHM--------------------------------------------------------------------------- 165 (238)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 44321
Q ss_pred HhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCC
Q 010573 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATN 345 (507)
Q Consensus 266 ~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~ 345 (507)
..|..|++..+.++..++.++ +|+|.||++|||+
T Consensus 166 ---------------------------------------------~~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~T~ 199 (238)
T d1aoga1 166 ---------------------------------------------PNGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSRTN 199 (238)
T ss_dssp ---------------------------------------------CCCEEECCGGGCGGGTTCCEE-TTEECCCTTCBCS
T ss_pred ---------------------------------------------ccccccceeeecccccEEEEc-CCeEEecCCeeec
Confidence 223345555554556677776 5899999999999
Q ss_pred CCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 346 IPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 346 ~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
+|+|||+|||.+.+++++.|..||+.||++|+|+.
T Consensus 200 ~~~iyAvGDv~~~~~l~~~A~~eg~~aa~~i~g~~ 234 (238)
T d1aoga1 200 VSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTT 234 (238)
T ss_dssp STTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSSS
T ss_pred cCCEEEEEEecCCccchhhHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999874
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.2e-27 Score=216.60 Aligned_cols=210 Identities=30% Similarity=0.518 Sum_probs=179.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
+|||+||||||||++||.+|++.|.+|+|||+ +.+||+|.+.+|+|++.+...+..++.+.......++......+++.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~-~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE 80 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHH
Confidence 59999999999999999999999999999999 57999999999999999999998888777666777887777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCCCCccCCceEe
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLPGITIDEKRIV 202 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~pg~~~~~~~~~ 202 (507)
++..+.+..+..+...++.++++.+|++..+.....+...... ++ ..+.++++++|||+.|..
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~---~~--~~~~~~~~iiatG~~p~i------------ 143 (217)
T d1gesa1 81 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NG--ETITADHILIATGGRPSH------------ 143 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEE---TT--EEEEEEEEEECCCEEECC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecC---CC--ceeeeeeeeeecCccccC------------
Confidence 9999999999988888889999999999988766665555433 23 788999999999986631
Q ss_pred cchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 203 SSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 203 ~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
T Consensus 144 -------------------------------------------------------------------------------- 143 (217)
T d1gesa1 144 -------------------------------------------------------------------------------- 143 (217)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcH
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLA 362 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~ 362 (507)
+..|+++.+.++..++.++++|++.+|+.++|+.|+||++||++.++.++
T Consensus 144 ------------------------------p~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela 193 (217)
T d1gesa1 144 ------------------------------PREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELT 193 (217)
T ss_dssp ------------------------------CEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCH
T ss_pred ------------------------------CCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHH
Confidence 11234444445666788888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCC
Q 010573 363 HKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 363 ~~A~~~g~~aa~~i~~~~ 380 (507)
+.+.++|+.++.++++..
T Consensus 194 ~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 194 PVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 999999999999998764
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.95 E-value=1.2e-27 Score=193.98 Aligned_cols=121 Identities=36% Similarity=0.537 Sum_probs=116.7
Q ss_pred CCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHH
Q 010573 386 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHE 465 (507)
Q Consensus 386 ~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~ 465 (507)
+.+|+++|++|++++||+|+++|++.++++.+.++++....++...+++.||+|+++|+++|+|||+|++|++|.|+|+.
T Consensus 2 r~IP~~vft~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~ 81 (128)
T d1ojta3 2 RVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGE 81 (128)
T ss_dssp CCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHH
T ss_pred CcCCEeecCCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHHH
Confidence 35899999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhccCCCC
Q 010573 466 AVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIH 506 (507)
Q Consensus 466 ~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~ 506 (507)
+++||++++|++||.+++++|||++|++.++++.+.+++.|
T Consensus 82 ~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~~~ 122 (128)
T d1ojta3 82 VCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGTCTD 122 (128)
T ss_dssp HHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTCCTT
T ss_pred HHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999988775
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=1.8e-27 Score=190.25 Aligned_cols=116 Identities=29% Similarity=0.438 Sum_probs=111.6
Q ss_pred CCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHH
Q 010573 386 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHE 465 (507)
Q Consensus 386 ~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~ 465 (507)
+.+|+++|++|++++||+||++|++.|++|.++++++....++...+++.||+|+++|+++++|||+|++|++|.|+|+.
T Consensus 2 r~iP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~~ 81 (118)
T d1xdia2 2 RTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILP 81 (118)
T ss_dssp GGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHH
T ss_pred CCCCEEecCCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHHH
Confidence 35899999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhc
Q 010573 466 AVLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501 (507)
Q Consensus 466 ~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~ 501 (507)
++.+|++++|++||.+++++|||++|++.++|+.+.
T Consensus 82 ~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~l~ 117 (118)
T d1xdia2 82 IAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM 117 (118)
T ss_dssp HHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998764
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.95 E-value=2.6e-27 Score=188.61 Aligned_cols=115 Identities=44% Similarity=0.695 Sum_probs=110.7
Q ss_pred CccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHHHHHH
Q 010573 387 KVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEA 466 (507)
Q Consensus 387 ~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~~~~ 466 (507)
.+|+++|++|++++||+||++|++.|+++.++++++....++...+++.||+|+++++++++|||++++|++|.|+|+.+
T Consensus 1 AvP~~vft~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~~ 80 (115)
T d1ebda3 1 AIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAEL 80 (115)
T ss_dssp CCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHH
T ss_pred CcCeEecCCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHHH
Confidence 37999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHhc
Q 010573 467 VLAINYDASSEDIARVCHAHPTMSEALKEAAMATH 501 (507)
Q Consensus 467 ~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~~~~~~ 501 (507)
+.+|++++|++||.+++++|||++|++.++|+.++
T Consensus 81 ~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~al 115 (115)
T d1ebda3 81 GLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVAL 115 (115)
T ss_dssp HHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998763
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.94 E-value=6.9e-30 Score=237.80 Aligned_cols=179 Identities=26% Similarity=0.499 Sum_probs=141.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
||++||||||||+.||.++++.|++|+|||+ ..+||+|++.||+|+|.++.....+....+ ...+|+.. ...++|..
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GGtc~n~gciPsK~l~~~~~~~~~~~~-~~~~G~~~-~~~~~~~~ 78 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTCVNVGCVPKKIMFNAASVHDILEN-SRHYGFDT-KFSFNLPL 78 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTHHHHHTSHHHHHHHHHHHHHHHHHHH-GGGGTCCC-CCCCCHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCCeEEeeCCcchHHHHhhhhcccchhc-cccccccc-hhhhhhhh
Confidence 8999999999999999999999999999998 679999999999999999988887765544 56677764 46799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCC---------ceEEEEeCeEEEccCCCC----CC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEG---------GNTVVKGKNIIIATGSDV----KS 190 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g---------~~~~~~~d~lvlAtG~~p----~~ 190 (507)
+..++...+..+...+...+++.+|+++.+.+.+++.+.+.+...++ ..+.+++|++|||||++| +.
T Consensus 79 ~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~ 158 (259)
T d1onfa1 79 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPD 158 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCT
T ss_pred HHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccc
Confidence 99999999999999899999999999999999888888777653221 236799999999999998 36
Q ss_pred CCCCccCCceEecchhhccccCCCCeEEEEcCcHHH
Q 010573 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIG 226 (507)
Q Consensus 191 ~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g 226 (507)
+|++..+...++++++++.++..++ ..|+|+|.+|
T Consensus 159 ~~~~~l~~~~i~ts~~~~~~d~~~~-t~Vig~gaiG 193 (259)
T d1onfa1 159 TENLKLEKLNVETNNNYIVVDENQR-TSVNNIYAVG 193 (259)
T ss_dssp TTTSSCTTTTCCBSSSCEEECTTCB-CSSSSEEECS
T ss_pred ccccccccceeeecccccccccCCc-eeEeeEEEEE
Confidence 7777777788899988888877664 4677887776
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.1e-25 Score=177.52 Aligned_cols=110 Identities=24% Similarity=0.446 Sum_probs=104.1
Q ss_pred CCCccEEEEcCCCeeeecCCHHHHHHc--CCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHH
Q 010573 385 YDKVPGVVYTHPEVASVGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462 (507)
Q Consensus 385 ~~~~p~~~~~~~~~~~vG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~ 462 (507)
|..+|+++|++|++++||+||+||+++ +.++++..+++....++...++++||+|+++++++++|||++++|++|.|+
T Consensus 1 Y~~vP~~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~El 80 (115)
T d3grsa3 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEM 80 (115)
T ss_dssp CTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCEEecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHHHH
Confidence 567999999999999999999999876 567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhcCcCCCCChHHHHH
Q 010573 463 IHEAVLAINYDASSEDIARVCHAHPTMSEALK 494 (507)
Q Consensus 463 ~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~ 494 (507)
|+.++.+|++++|+++|++++++|||++|+|.
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~ 112 (115)
T d3grsa3 81 LQGFAVAVKMGATKADFDNTVAIHPTSSEELV 112 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred HHHHHHHHHcCCCHHHHhhCccCCCCHHHHHH
Confidence 99999999999999999999999999999874
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.4e-25 Score=176.22 Aligned_cols=110 Identities=27% Similarity=0.441 Sum_probs=103.4
Q ss_pred CCCccEEEEcCCCeeeecCCHHHHHHc--CCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECCChHHH
Q 010573 385 YDKVPGVVYTHPEVASVGKTEEQVKEL--GVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGEL 462 (507)
Q Consensus 385 ~~~~p~~~~~~~~~~~vG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~ 462 (507)
|+.+|+++|++|++++||+|+++|++. +.++++..+++....++...+++.|++|+++|+++++|||+|++|++|.|+
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~El 80 (115)
T d1gesa3 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEM 80 (115)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCeEecCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHHHH
Confidence 578999999999999999999999987 456888888999999998888899999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHhcCcCCCCChHHHHH
Q 010573 463 IHEAVLAINYDASSEDIARVCHAHPTMSEALK 494 (507)
Q Consensus 463 ~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~ 494 (507)
|+.++.+|++++|+++|++++++|||++|+|.
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~ 112 (115)
T d1gesa3 81 LQGFAVALKMGATKKDFDNTVAIHPTAAEEFV 112 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred HHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence 99999999999999999999999999999874
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.90 E-value=7.1e-24 Score=171.64 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=102.7
Q ss_pred CCCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCC-cceEEEEEEECCCCeEEEEEEECCChHHHH
Q 010573 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDD-AEGIVKILAEKETDKILGVHIMAPNAGELI 463 (507)
Q Consensus 385 ~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~ 463 (507)
|..+|+++|++|++++||+||++|+..+.++.+...++....++....+ ..+++|+++|+++|+|||+|++|++|.|+|
T Consensus 1 y~~VP~aVfT~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~ElI 80 (128)
T d1feca3 1 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII 80 (128)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHH
T ss_pred CCCCCEEecCCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHHHH
Confidence 5679999999999999999999999999999999988888777766544 456899999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHH
Q 010573 464 HEAVLAINYDASSEDIARVCHAHPTMSEALKEA 496 (507)
Q Consensus 464 ~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~ 496 (507)
+.++++|++++|+++|.+++++|||++|.|..+
T Consensus 81 ~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~ 113 (128)
T d1feca3 81 QSVAICLKMGAKISDFYNTIGVHPTSAEELCSM 113 (128)
T ss_dssp HHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred HHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHH
Confidence 999999999999999999999999999998654
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.90 E-value=1e-23 Score=169.12 Aligned_cols=111 Identities=22% Similarity=0.405 Sum_probs=94.9
Q ss_pred CCCccEEEEcCCCeeeecCCHHHHHHcCCC--EEEEEEecCc----ccchhhcCCcceEEEEEEECCCCeEEEEEEECCC
Q 010573 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLA----NSRAKAIDDAEGIVKILAEKETDKILGVHIMAPN 458 (507)
Q Consensus 385 ~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~ 458 (507)
|+.+|+++|++|++|+||+||++|++.+.+ +.+....+.. ..++....+.+|++|+++++++++|||+|++|++
T Consensus 1 Y~~vP~~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG~~ 80 (119)
T d1onfa3 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLN 80 (119)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCcCCeEeccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeCCC
Confidence 578999999999999999999999988754 3333333332 2344445567799999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHH
Q 010573 459 AGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495 (507)
Q Consensus 459 ~~~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~ 495 (507)
|+|+|+.+++||++|+|+++|++++++|||++|+|..
T Consensus 81 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~ 117 (119)
T d1onfa3 81 ADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT 117 (119)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHh
Confidence 9999999999999999999999999999999999853
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.88 E-value=1.5e-22 Score=167.41 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=98.2
Q ss_pred CCccEEEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCccc----------------chhhcCCcceEEEEEEECCCCeE
Q 010573 386 DKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANS----------------RAKAIDDAEGIVKILAEKETDKI 449 (507)
Q Consensus 386 ~~~p~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~k~~~~~~~~~i 449 (507)
..+|+++|++|++++||+||++|++.|.++.++.+++.... ++...+++.||+|+++|+++++|
T Consensus 2 ~~iP~vvfT~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~I 81 (140)
T d1mo9a3 2 KNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKV 81 (140)
T ss_dssp CSCCEEEESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBE
T ss_pred CCCCcEeccCCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCcE
Confidence 35799999999999999999999999999999998754322 12345667899999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHCCCCHHHHhcC--cCCCCChHHHHHHHH
Q 010573 450 LGVHIMAPNAGELIHEAVLAINYDASSEDIARV--CHAHPTMSEALKEAA 497 (507)
Q Consensus 450 lG~~~~g~~~~~~~~~~~~~i~~~~~~~~l~~~--~~~~p~~~~~~~~~~ 497 (507)
||+|++|++|.|+|+.++++|++++|++||+++ +|+|||++|.+..+.
T Consensus 82 lGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~l~ 131 (140)
T d1mo9a3 82 LGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLR 131 (140)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHHHh
Confidence 999999999999999999999999999999987 688999999875543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.87 E-value=1.8e-21 Score=172.81 Aligned_cols=163 Identities=23% Similarity=0.271 Sum_probs=125.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccCCCCCH--------------HHHHHHHHHHHhcCcEEEcCceEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVPSMDG--------------EIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~~d~--------------~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
+|+|||+|++|+|+|..|++.+ .+|+++++.+.+ +..+. .+.....+.++++||++++++.|+
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~ 80 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI-SFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS-SBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc-cccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeecee
Confidence 6999999999999999999985 578999887654 11111 122223567888999999999999
Q ss_pred EEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC-----CcccCceecCCCCeecCCCCCCCCCCeEEecC
Q 010573 280 GVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-----LDKIGVETDKMGRIPVNERFATNIPGVYAIGD 354 (507)
Q Consensus 280 ~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-----~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD 354 (507)
+++.+++.+++. +..+++..++++|.+++|+|..|+..... .-..+++++++|+|.||+++||+.|+|||+||
T Consensus 81 ~i~~~~~~v~~~--~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD 158 (198)
T d1nhpa1 81 AIQPKEHQVTVK--DLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGD 158 (198)
T ss_dssp EEETTTTEEEEE--ETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred eEeeccccceee--ecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEecc
Confidence 998777765554 44566777899999999998876532100 11225778889999999999999999999999
Q ss_pred CCCC----------CCcHhHHHHHHHHHHHHHcCCCC
Q 010573 355 VIPG----------PMLAHKAEEDGVACVEFLAGKHG 381 (507)
Q Consensus 355 ~a~~----------~~~~~~A~~~g~~aa~~i~~~~~ 381 (507)
|+.. ..++..|.+||+.||+||.+...
T Consensus 159 ~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~ 195 (198)
T d1nhpa1 159 ATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 195 (198)
T ss_dssp GSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCC
T ss_pred eeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCC
Confidence 9843 23688999999999999987643
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.85 E-value=7.6e-22 Score=172.90 Aligned_cols=156 Identities=21% Similarity=0.292 Sum_probs=118.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCC-HHHHHHHH----------HHHHhcCcEEEcCceEEEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD-GEIRKQFQ----------RSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d-~~~~~~~~----------~~l~~~Gv~i~~~~~v~~i~ 282 (507)
..+|+|||+|++|+|+|..|+++|.+++++.+.++.++.++ +.+...+. +.....+++++++.+++++.
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 82 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 82 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence 35699999999999999999999999888877766654333 22222221 22345699999999999986
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCC---cccCceecCCCCeecCCCCCCCCCCeEEecCCCCCC
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL---DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP 359 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~---~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~ 359 (507)
.+...+ ++. +++++++|.+++|+|..|++..++. ...++..+ ++|.||+++||+.|+|||+|||+..+
T Consensus 83 ~~~~~~--~~~-----~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~--~~I~vd~~~~ts~~~IyA~GD~a~~~ 153 (183)
T d1d7ya1 83 PQAHTV--ALS-----DGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD--DGIFVDAYGRTTCPDVYALGDVTRQR 153 (183)
T ss_dssp TTTTEE--EET-----TSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS--SSEECCTTCBCSSTTEEECGGGEEEE
T ss_pred ccccee--Eec-----CCcEeeeeeEEEEEEEEcccccccccccceeeEeeC--CcEEeccceeccccccchhhhhhccc
Confidence 555443 343 6689999999999999998765432 23345543 57999999999999999999998422
Q ss_pred ----------CcHhHHHHHHHHHHHHHcC
Q 010573 360 ----------MLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 360 ----------~~~~~A~~~g~~aa~~i~~ 378 (507)
.++..|.+||+.||+||+.
T Consensus 154 ~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 154 NPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp CTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred eeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 3688999999999999974
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.85 E-value=5e-21 Score=154.83 Aligned_cols=122 Identities=86% Similarity=1.256 Sum_probs=113.4
Q ss_pred CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCc
Q 010573 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 191 ~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
+||.+.++..++++++++.++..|++++|||+|++|+|+|..|.++|.+||++++.+++++.+|+++.+.+.+.|+++||
T Consensus 2 iPgi~~d~~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI 81 (123)
T d1dxla2 2 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGM 81 (123)
T ss_dssp BTTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSC
T ss_pred CCCCcCCCCeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccc
Confidence 67777778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~ 312 (507)
++++++++++++..++++++++...++++.+++++|.|++|.
T Consensus 82 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 82 KFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp CEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred eEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 999999999999888888888877667777889999999873
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=2e-21 Score=158.40 Aligned_cols=112 Identities=25% Similarity=0.403 Sum_probs=90.4
Q ss_pred CCCccEEEEcCCCeeeecCCHHHHHHcCCC--EEEEEEecCcccchhhc-CCcceEEEEEEE-CCCCeEEEEEEECCChH
Q 010573 385 YDKVPGVVYTHPEVASVGKTEEQVKELGVE--YRVGKFPFLANSRAKAI-DDAEGIVKILAE-KETDKILGVHIMAPNAG 460 (507)
Q Consensus 385 ~~~~p~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~-~~~~~ilG~~~~g~~~~ 460 (507)
|+.+|+++|++|++|+||+||+||++.+.+ +.+....+....+.... ....++.+++++ +++++|||+|++|++|.
T Consensus 1 Y~~VP~~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~A~ 80 (133)
T d1h6va3 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAG 80 (133)
T ss_dssp CSSCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTTHH
T ss_pred CCCCCEEecCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCCHH
Confidence 678999999999999999999999988654 33333344443333332 344566666665 57899999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHH
Q 010573 461 ELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEA 496 (507)
Q Consensus 461 ~~~~~~~~~i~~~~~~~~l~~~~~~~p~~~~~~~~~ 496 (507)
|+|+.++++|++++|+++|++++++|||++|+|..+
T Consensus 81 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~l 116 (133)
T d1h6va3 81 EVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTL 116 (133)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHh
Confidence 999999999999999999999999999999998443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=3.1e-20 Score=149.70 Aligned_cols=120 Identities=54% Similarity=0.831 Sum_probs=107.9
Q ss_pred CCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcE
Q 010573 192 PGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 192 pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~ 271 (507)
||++.++..++++++++.+...|++++|||+|++|+|+|..|+++|++||++++.++++|.+|+++.+.+++.++++||+
T Consensus 1 Pgi~~d~~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~ 80 (122)
T d1v59a2 1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLD 80 (122)
T ss_dssp TTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCE
T ss_pred CCCccCCCEEEehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccce
Confidence 55666678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCceEEEEEEcCCe--EEEEEeecCCCceEEEEcCEEEEe
Q 010573 272 FMLKTKVVGVDLSGDG--VKLTLEPAAGGEKTILEADVVLVS 311 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~--v~v~~~~~~~g~~~~i~~D~vi~a 311 (507)
+++++++++++..+++ +.+++.+..++..+++++|.|++|
T Consensus 81 i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 81 FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 9999999999876554 445666666667788999999986
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.84 E-value=2.5e-20 Score=149.69 Aligned_cols=115 Identities=43% Similarity=0.684 Sum_probs=107.2
Q ss_pred CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 197 DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
++..++++++++.++..|++++|||+|++|+|+|..|+++|++||++++.+++++.+|+++.+.+++.++++||++++++
T Consensus 5 d~~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~ 84 (119)
T d3lada2 5 DQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGA 84 (119)
T ss_dssp CSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETC
T ss_pred CCCEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
++++++.+++++.+++.+ .+.++++++|.|++|+|
T Consensus 85 ~v~~i~~~~~~v~v~~~~--~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 85 RVTGTEVKNKQVTVKFVD--AEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEEEECSSCEEEEEES--SSEEEEEEESEEEECSC
T ss_pred EEEEEEEeCCEEEEEEEE--CCCCEEEECCEEEEeeC
Confidence 999999999998888764 22456899999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.83 E-value=2.5e-20 Score=150.44 Aligned_cols=122 Identities=45% Similarity=0.662 Sum_probs=109.4
Q ss_pred CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCc
Q 010573 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 191 ~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
+|+.+. ...++++++++.+.+.|++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++.+.+++.++++||
T Consensus 4 lP~ip~-~~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv 82 (125)
T d1ojta2 4 LPFIPE-DPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFD 82 (125)
T ss_dssp CSSCCC-CTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEE
T ss_pred CCCCCC-CCcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCc
Confidence 444442 4568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 271 KFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
++++++.+++++.+++++.++++. .++..+++++|.|++|+|+
T Consensus 83 ~~~~~~~v~~v~~~~~g~~v~~~~-~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 83 NIMVNTKTVAVEPKEDGVYVTFEG-ANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEECSCEEEEEEEETTEEEEEEES-SSCCSSCEEESCEEECCCE
T ss_pred ccccCcEEEEEEEcCCcEEEEEEe-CCCCeEEEEcCEEEEecCC
Confidence 999999999999999998888764 2334468999999999995
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.82 E-value=8.1e-21 Score=153.75 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=94.2
Q ss_pred EEEcCCCeeeecCCHHHHHHcCCCEEEEEEecCcccchhhcCCcceEEEEEEECCCCeEEEEEEECC-ChHHHHHHHHHH
Q 010573 391 VVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAP-NAGELIHEAVLA 469 (507)
Q Consensus 391 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~-~~~~~~~~~~~~ 469 (507)
.+| +|++++||+||++|++.|+++.+..++..... ....+.+.+|+|+++|+++++|||+|++|. ++.|+|+.++.|
T Consensus 9 ~vf-d~eiasvGlte~eA~~~g~~~~~~~~~~~~~~-~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~a 86 (126)
T d1nhpa3 9 AVF-DYKFASTGINEVMAQKLGKETKAVTVVEDYLM-DFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLA 86 (126)
T ss_dssp EET-TEEEEEEECCHHHHHHHTCCCEEEEEEEESSC-TTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHH
T ss_pred eEc-CccEEEecccHHHHHHCCCCEEEEEEecCcch-hhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHHHHH
Confidence 345 99999999999999999999999887654322 223356689999999999999999999996 599999999999
Q ss_pred HHCCCCHHHHhcCcCC-CCChHHH---HHHHHHHhccC
Q 010573 470 INYDASSEDIARVCHA-HPTMSEA---LKEAAMATHDK 503 (507)
Q Consensus 470 i~~~~~~~~l~~~~~~-~p~~~~~---~~~~~~~~~~~ 503 (507)
|++++|++||.+++++ |||++|+ +..+|+.+.++
T Consensus 87 i~~~~t~~dL~~~~~~yhPt~se~~~~l~~aA~~a~~~ 124 (126)
T d1nhpa3 87 IQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQ 124 (126)
T ss_dssp HHTTCBHHHHHTCCCCCCTTTCCSSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHhcCcccCCCCCchhHHHHHHHHHHHHhC
Confidence 9999999999999876 8999996 66777776654
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.82 E-value=6e-20 Score=158.13 Aligned_cols=149 Identities=23% Similarity=0.288 Sum_probs=114.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHH-------------HHHHHHHHhcCcEEEcCceEEEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIR-------------KQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~-------------~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
||+|||+|++|+|+|..|++ +.+||++++.+.+. ..++.+. ....+.+++.++++++++.++.++
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 79 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY-YSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLID 79 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC-CCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc-ccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeeccccccc
Confidence 79999999999999999976 67999999876431 1111111 122456778899999999999985
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCC---
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGP--- 359 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~--- 359 (507)
... .+ +. . ++.++++|.+++|+|..|+. + .+..|++.++ .|.||+++||+.|+|||+|||+..+
T Consensus 80 ~~~-~~-~~-~-----~~~~i~~D~li~a~G~~~~~-~--~~~~gl~~~~--~i~v~~~~~t~~~~i~aiGD~~~~~~~~ 146 (167)
T d1xhca1 80 RGR-KV-VI-T-----EKGEVPYDTLVLATGAPNVD-L--ARRSGIHTGR--GILIDDNFRTSAKDVYAIGDCAEYSGII 146 (167)
T ss_dssp TTT-TE-EE-E-----SSCEEECSEEEECCCEECCH-H--HHHTTCCBSS--SEECCTTSBCSSTTEEECGGGEEBTTBC
T ss_pred ccc-cc-cc-c-----cccccccceeEEEEEecCCc-h--hhhcCceeCC--ceeeccccEecCCCeEEeeecccCCCeE
Confidence 432 22 22 2 45689999999999997753 3 5667788764 5999999999999999999998543
Q ss_pred -CcHhHHHHHHHHHHHHHcCC
Q 010573 360 -MLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 360 -~~~~~A~~~g~~aa~~i~~~ 379 (507)
..++.|+.||+.+|+||+|+
T Consensus 147 ~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 147 AGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp CCSHHHHHHHHHHHHHHHTTC
T ss_pred EChHHHHHHHHHHHHHHcCCC
Confidence 46789999999999999874
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=7.3e-21 Score=166.89 Aligned_cols=157 Identities=20% Similarity=0.270 Sum_probs=117.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCC--------------HHHHHHHHHHHHhcCcEEEcCceE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMD--------------GEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d--------------~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
+++|+|||+|++|+|+|..|+++|.+++++.+.++... ... ..............+..+..+..+
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 82 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence 68999999999999999999999999888776654321 111 111112234456678888888888
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCC-cccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGL-DKIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
..+..+.. .+... ++.++++|.+++++|.+|+++.+.+ +..++.. +|.+.||+++||++|+|||+|||+.
T Consensus 83 ~~~~~~~~--~v~~~-----~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~ts~~~vya~GD~~~ 153 (185)
T d1q1ra1 83 TAINRDRQ--QVILS-----DGRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQTSDPLIMAVGDCAR 153 (185)
T ss_dssp EEEETTTT--EEEET-----TSCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBCSSTTEEECGGGEE
T ss_pred eeeccccc--EEEee-----ceeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccccchhhhhcchhhhc
Confidence 87754443 33332 5679999999999999887654322 3444444 4689999999999999999999984
Q ss_pred C----------CCcHhHHHHHHHHHHHHHcCC
Q 010573 358 G----------PMLAHKAEEDGVACVEFLAGK 379 (507)
Q Consensus 358 ~----------~~~~~~A~~~g~~aa~~i~~~ 379 (507)
. +.+++.|.+||+.||+||+|+
T Consensus 154 ~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 154 FHSQLYDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp EEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence 3 247999999999999999885
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.1e-19 Score=145.15 Aligned_cols=114 Identities=27% Similarity=0.474 Sum_probs=103.3
Q ss_pred CCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCc
Q 010573 191 LPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKM 270 (507)
Q Consensus 191 ~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv 270 (507)
+||.+ ..+++++++.++..|++++|||+|++|+|+|..|+++|.+||++++.+++++.+|+++++.+.+.|+++||
T Consensus 2 iPG~e----~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV 77 (116)
T d1gesa2 2 IPGVE----YGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP 77 (116)
T ss_dssp STTGG----GSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred cCCcc----ccCCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCC
Confidence 56653 35789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCceEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 271 KFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
++++++.+++++.+++ .+.++++ +++++++|.|++|+|
T Consensus 78 ~~~~~~~v~~i~~~~~~~~~v~~~-----~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 78 QLHTNAIPKAVVKNTDGSLTLELE-----DGRSETVDCLIWAIG 116 (116)
T ss_dssp EEECSCCEEEEEECTTSCEEEEET-----TSCEEEESEEEECSC
T ss_pred EEEeCCEEEEEEEcCCcEEEEEEC-----CCCEEEcCEEEEecC
Confidence 9999999999987654 4667765 567899999999998
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.81 E-value=2.9e-19 Score=143.34 Aligned_cols=111 Identities=41% Similarity=0.712 Sum_probs=102.6
Q ss_pred ceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceE
Q 010573 199 KRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKV 278 (507)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 278 (507)
..++++++++.+...|++++|||+|++|+|+|..|.++|.+||++++.+++++.+|+++++.+.+.|+++||++++++.+
T Consensus 7 ~~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v 86 (117)
T d1ebda2 7 NRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA 86 (117)
T ss_dssp SSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred CCEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEeecCCCceEEEEcCEEEEe
Q 010573 279 VGVDLSGDGVKLTLEPAAGGEKTILEADVVLVS 311 (507)
Q Consensus 279 ~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a 311 (507)
++++..++++.+++.. +++.+++++|.|+++
T Consensus 87 ~~i~~~~~~~~v~~~~--~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 87 KGAEEREDGVTVTYEA--NGETKTIDADYVLVT 117 (117)
T ss_dssp EEEEEETTEEEEEEEE--TTEEEEEEESEEEEC
T ss_pred EEEEEcCCEEEEEEEe--CCCEEEEEeEEEEEC
Confidence 9999888888887753 445678999999974
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9e-21 Score=169.69 Aligned_cols=157 Identities=19% Similarity=0.259 Sum_probs=119.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCC--eeEEEcccCccCCCC-----------------------------------CHH-
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGS--EVTVVEFAADIVPSM-----------------------------------DGE- 256 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~--~Vtlv~~~~~~~~~~-----------------------------------d~~- 256 (507)
.+++|||+|++|+++|..|++.+. +|+++.+.+.+ |.. +++
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~-py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL-PYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF 83 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC-CBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC-CccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence 468999999999999999998874 68888764432 110 000
Q ss_pred -HHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceec-CCC
Q 010573 257 -IRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETD-KMG 334 (507)
Q Consensus 257 -~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~-~~G 334 (507)
........+++.||+++++++|++++.+++. |++. +++++++|.+|+|+|..|+...+ .+..|++++ ..|
T Consensus 84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~--V~l~-----dG~~i~~d~lViAtG~~~~~~~l-~~~~gl~~~~~~~ 155 (213)
T d1m6ia1 84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDNM--VKLN-----DGSQITYEKCLIATGGTEPNVEL-AKTGGLEIDSDFG 155 (213)
T ss_dssp SBCTTTTTTSTTCEEEEEETCCEEEEEGGGTE--EEET-----TSCEEEEEEEEECCCEEEECCTT-HHHHTCCBCTTTC
T ss_pred hhhhhhHHHHHHCCeEEEeCCEEEEeeccCce--eeec-----cceeeccceEEEeeeeecchhhh-hhccchhhhhhhh
Confidence 0111123456789999999999999776664 4443 67899999999999988766544 466678774 458
Q ss_pred CeecCCCCCCCCCCeEEecCCCCC---------CCcHhHHHHHHHHHHHHHcCCCC
Q 010573 335 RIPVNERFATNIPGVYAIGDVIPG---------PMLAHKAEEDGVACVEFLAGKHG 381 (507)
Q Consensus 335 ~i~Vd~~~~t~~~~IyA~GD~a~~---------~~~~~~A~~~g~~aa~~i~~~~~ 381 (507)
.|.||++|||+ |+|||+|||+.. +.++..|..||+.||+||+|...
T Consensus 156 ~i~vd~~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~ 210 (213)
T d1m6ia1 156 GFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK 210 (213)
T ss_dssp SEECCTTCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCC
T ss_pred hhhhhHhcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCC
Confidence 89999999998 999999999842 34788999999999999998764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.80 E-value=4.2e-22 Score=181.54 Aligned_cols=191 Identities=15% Similarity=0.219 Sum_probs=123.8
Q ss_pred cccccccccceeeeeeccccccCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhh
Q 010573 16 RNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLH 95 (507)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~ 95 (507)
.|..|+..++++...+++++ +++.....+|+||||||||++||..|++.|++|+|+|+++.+||+|.....+|......
T Consensus 23 ~c~~n~~~~~e~~~~~~p~~-~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~ 101 (233)
T d1djqa3 23 ICTQNATAGEEYRRGWHPEK-FRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWS 101 (233)
T ss_dssp CCSSCTTTTTHHHHCCCSSC-CCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGG
T ss_pred eeecCcccChHHhcCCCCCc-cCcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeeccc
Confidence 48999999999888888776 55667788999999999999999999999999999999999999887655554322111
Q ss_pred hhHHHHHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEE
Q 010573 96 SSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVV 175 (507)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~ 175 (507)
. ...+. ...+.... ...+.... +.....+...+. ..+
T Consensus 102 ~---------------------------~~~~~-------~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~--~~~ 138 (233)
T d1djqa3 102 Y---------------------------HRDYR-------ETQITKLL-KKNKESQL------ALGQKPMTADDV--LQY 138 (233)
T ss_dssp H---------------------------HHHHH-------HHHHHHHH-TTCTTCEE------ECSCCCCCHHHH--HTS
T ss_pred c---------------------------cchhH-------HHHHHHHh-hcceeeee------ecccccccchhh--hhh
Confidence 0 00000 00011111 11111100 000011111111 346
Q ss_pred EeCeEEEccCCCCCCC--CCCccCCc-eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC
Q 010573 176 KGKNIIIATGSDVKSL--PGITIDEK-RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (507)
Q Consensus 176 ~~d~lvlAtG~~p~~~--pg~~~~~~-~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 250 (507)
.||++|+|||+.+..+ ++...... ......+.......+++++|+|+|++|+|+|..+.+.|.+|+++++++.++
T Consensus 139 ~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~ 216 (233)
T d1djqa3 139 GADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA 216 (233)
T ss_dssp CCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred ccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence 7999999999877432 22111111 111122222233457899999999999999999999999999999998764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=9.7e-19 Score=141.68 Aligned_cols=120 Identities=27% Similarity=0.471 Sum_probs=105.6
Q ss_pred CCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcC
Q 010573 190 SLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQK 269 (507)
Q Consensus 190 ~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~G 269 (507)
.+||.+ ..+|+++++.++..|++++|||+|++|+|+|..|+++|.+||++++++++++.+|+++.+.+.+.|+++|
T Consensus 2 ~IPG~e----~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~G 77 (125)
T d3grsa2 2 QIPGAS----LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAG 77 (125)
T ss_dssp TSTTGG----GSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred CCCCcc----ccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCC
Confidence 356643 3588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCceEEEEEEcCCeEEEEEeecCCC----ceEEEEcCEEEEeec
Q 010573 270 MKFMLKTKVVGVDLSGDGVKLTLEPAAGG----EKTILEADVVLVSAG 313 (507)
Q Consensus 270 v~i~~~~~v~~i~~~~~~v~v~~~~~~~g----~~~~i~~D~vi~a~G 313 (507)
|++++++++++++.+++++.+.+.....| ....+++|.|++|+|
T Consensus 78 v~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 78 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp CEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred CEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 99999999999999888887766543332 234678999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.78 E-value=7.4e-19 Score=140.95 Aligned_cols=110 Identities=26% Similarity=0.475 Sum_probs=98.7
Q ss_pred eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhc---CCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARL---GSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 200 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~---g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
.++|+++++.++..|++++|||+|++|+|+|..+.++ |.+|+++++.+++++.+|+++++.+++.++++||++++++
T Consensus 4 ~~~ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~ 83 (117)
T d1feca2 4 LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHE 83 (117)
T ss_dssp GCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETC
T ss_pred EEEchHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCC
Confidence 4678999999999999999999999999999887655 8899999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCe-EEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 277 KVVGVDLSGDG-VKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 277 ~v~~i~~~~~~-v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.+++++.++++ ..+.++ +++++++|.|++|+|+
T Consensus 84 ~v~~i~~~~~g~~~v~~~-----~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 84 NPAKVTKNADGTRHVVFE-----SGAEADYDVVMLAIGR 117 (117)
T ss_dssp CEEEEEECTTSCEEEEET-----TSCEEEESEEEECSCE
T ss_pred EEEEEEECCCCEEEEEEC-----CCCEEEcCEEEEecCC
Confidence 99999876554 456665 6678999999999996
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.78 E-value=1.6e-18 Score=138.17 Aligned_cols=114 Identities=23% Similarity=0.413 Sum_probs=99.4
Q ss_pred CCCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhc
Q 010573 189 KSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQ 268 (507)
Q Consensus 189 ~~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~ 268 (507)
|++||.+ ..+++++++.++. |++++|||||++|+|+|..|+++|++||++++.+++++.+|+++++.+++.|+++
T Consensus 2 P~IpG~e----~~~ts~~~~~l~~-p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~ 76 (117)
T d1onfa2 2 PPVKGIE----NTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKN 76 (117)
T ss_dssp CSCTTGG----GCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHT
T ss_pred cccCCHh----HcCchhHHhccCC-CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhC
Confidence 3567753 4688999988877 9999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCceEEEEEEcCC-eEEEEEeecCCCceEEE-EcCEEEEee
Q 010573 269 KMKFMLKTKVVGVDLSGD-GVKLTLEPAAGGEKTIL-EADVVLVSA 312 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i-~~D~vi~a~ 312 (507)
||++++++.+++++..++ .+.+++. +++.+ .+|.|++|+
T Consensus 77 gV~i~~~~~v~~i~~~~~~~~~v~~~-----~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 77 NINIVTFADVVEIKKVSDKNLSIHLS-----DGRIYEHFDHVIYCV 117 (117)
T ss_dssp TCEEECSCCEEEEEESSTTCEEEEET-----TSCEEEEESEEEECC
T ss_pred CCEEEECCEEEEEEEcCCCeEEEEEC-----CCCEEEeCCEEEEeC
Confidence 999999999999986644 5667765 45555 579999985
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=2.9e-18 Score=137.89 Aligned_cols=113 Identities=24% Similarity=0.370 Sum_probs=99.0
Q ss_pred eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEE
Q 010573 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVV 279 (507)
Q Consensus 200 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 279 (507)
..+|+++++.+.+.|++++|||+|++|+|+|..|+++|++||++++ +++++.+|+++++.+.+.|+++||++++++.++
T Consensus 6 ~~~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~-~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~ 84 (122)
T d1h6va2 6 YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDMANKIGEHMEEHGIKFIRQFVPT 84 (122)
T ss_dssp HCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEE
T ss_pred eeEcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEe-chhhccCCHHHHHHHHHHHHHCCCEEEECCEEE
Confidence 4578999999999999999999999999999999999999999986 468999999999999999999999999999999
Q ss_pred EEEEcC----CeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 280 GVDLSG----DGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 280 ~i~~~~----~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
+++..+ ..+.+++....+++...+++|.|++|+|
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 85 KIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 997642 3466666655555556788999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.76 E-value=3.7e-18 Score=136.17 Aligned_cols=111 Identities=39% Similarity=0.595 Sum_probs=97.8
Q ss_pred CceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCce
Q 010573 198 EKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
+..++++++++.+...|++++|||+|++|+|+|..|+++|++||++++.+++++.+|+++.+.+++.|+++||+++++++
T Consensus 5 g~~~~~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~ 84 (115)
T d1lvla2 5 GGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHS 84 (115)
T ss_dssp BTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCE
T ss_pred CCcEECChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcE
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 278 v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
|++++ ++...... ..++++++++|.|++|+|
T Consensus 85 V~~i~--~~~~~~~~---~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 85 VEGYE--NGCLLAND---GKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EEEEE--TTEEEEEC---SSSCCCEECCSCEEECCC
T ss_pred EEEEc--CCeEEEEE---cCCCeEEEEcCEEEEecC
Confidence 99985 33333221 234556899999999998
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.75 E-value=6.7e-18 Score=135.05 Aligned_cols=108 Identities=22% Similarity=0.453 Sum_probs=96.7
Q ss_pred eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcC---CeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 200 RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 200 ~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
.++++++++.+.+.|++++|||+|++|+|+|..+.+++ .+||++++.+++++.+|+++++.+++.|+++||++++++
T Consensus 6 ~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~ 85 (117)
T d1aoga2 6 HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKE 85 (117)
T ss_dssp GCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred ceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCC
Confidence 36899999999999999999999999999998887765 479999999999999999999999999999999999999
Q ss_pred eEEEEEEcCC-eEEEEEeecCCCceEEEEcCEEEEee
Q 010573 277 KVVGVDLSGD-GVKLTLEPAAGGEKTILEADVVLVSA 312 (507)
Q Consensus 277 ~v~~i~~~~~-~v~v~~~~~~~g~~~~i~~D~vi~a~ 312 (507)
++++++..++ .+.++++ +++++++|.|++|+
T Consensus 86 ~v~~ie~~~~~~~~v~~~-----~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 86 NPAKVELNADGSKSVTFE-----SGKKMDFDLVMMAI 117 (117)
T ss_dssp CEEEEEECTTSCEEEEET-----TSCEEEESEEEECS
T ss_pred EEEEEEEcCCCeEEEEEC-----CCcEEEeCEEEEeC
Confidence 9999986544 5667775 56789999999984
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.1e-20 Score=158.38 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=106.4
Q ss_pred hccccccccccceeeeeeccccccCCCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhh
Q 010573 14 LSRNLSNSSNGNVFKYSFSLTRGFASASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKAL 93 (507)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~ 93 (507)
.-.|..||..+++..++ ..+..+.++|+|||||||||+||..|+++|++|+|+|+.+.+||+......+|.+.
T Consensus 20 ~~~C~~Np~~g~e~~~~------~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~- 92 (179)
T d1ps9a3 20 VTSCLVNPRACHETKMP------ILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKE- 92 (179)
T ss_dssp CCCCSSCTTTTCTTTSC------CCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCT-
T ss_pred eeEEeeCccccCccccc------cCCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccc-
Confidence 45689999999987655 34556678999999999999999999999999999999999999744322222211
Q ss_pred hhhhHHHHHHHhhhhhCCcccCccccChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceE
Q 010573 94 LHSSHMYHEAMHSFASHGVKFSSVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNT 173 (507)
Q Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~ 173 (507)
.+ ..+.+++..++++.+|++..++... .+ .
T Consensus 93 --------------------------~~-----------~~~~~~~~~~~~~~gV~i~l~~~Vt----------~~---~ 122 (179)
T d1ps9a3 93 --------------------------EF-----------YETLRYYRRMIEVTGVTLKLNHTVT----------AD---Q 122 (179)
T ss_dssp --------------------------TH-----------HHHHHHHHHHHHHHTCEEEESCCCC----------SS---S
T ss_pred --------------------------hH-----------HHHHHHHHHhhhcCCeEEEeCCEEc----------cc---c
Confidence 11 1222334556667789987765321 11 2
Q ss_pred EEEeCeEEEccCCCCCCCCCCccCCceEecchhhccccCCCCeEEEEcCcHHHHHH-HHHHHhcCCe
Q 010573 174 VVKGKNIIIATGSDVKSLPGITIDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEM-GSVWARLGSE 239 (507)
Q Consensus 174 ~~~~d~lvlAtG~~p~~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~-A~~l~~~g~~ 239 (507)
...||.+|+|||+.|..++.. ..+.+++++|+|+|.+++++ +....+.|.+
T Consensus 123 ~~~~d~vilAtG~~~~~~~~p---------------g~~~g~~v~vigggd~a~~~~~~~Av~~G~~ 174 (179)
T d1ps9a3 123 LQAFDETILASGIPNRALAQP---------------LIDSGKTVHLIGGCDVAMELDARRAIAQGTR 174 (179)
T ss_dssp SCCSSEEEECCCEECCTTHHH---------------HHTTTCCEEECGGGTCCSSCCHHHHHHHHHH
T ss_pred cccceeEEEeecCCCcccccc---------------hhccCCEEEEECCcHhhhhccchhhhhccCE
Confidence 346899999999977543211 11247899999999998886 4444444443
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.72 E-value=1.2e-17 Score=133.81 Aligned_cols=116 Identities=22% Similarity=0.367 Sum_probs=93.9
Q ss_pred CCCCCCccCCceEecchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHH
Q 010573 189 KSLPGITIDEKRIVSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRS 264 (507)
Q Consensus 189 ~~~pg~~~~~~~~~~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~ 264 (507)
|++||.+.+-..+.+.+|+..+. ..+++++|||+|++|+|+|..|++.|.+||++++.+++++ .+|+++++.+++.
T Consensus 2 P~ipG~~~~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~ 81 (121)
T d1d7ya2 2 PTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARY 81 (121)
T ss_dssp GGGTTCSSCEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHH
T ss_pred ccCCCCCCCEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHH
Confidence 35677653211223455555443 3479999999999999999999999999999999999987 7899999999999
Q ss_pred HHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 265 l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
++++||++++++.++++. ++. +++. +++++++|.||+|+|
T Consensus 82 l~~~GV~i~~~~~v~~~~--~~~--v~l~-----dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 82 HAAQGVDLRFERSVTGSV--DGV--VLLD-----DGTRIAADMVVVGIG 121 (121)
T ss_dssp HHTTTCEEEESCCEEEEE--TTE--EEET-----TSCEEECSEEEECSC
T ss_pred HHHCCcEEEeCCEEEEEe--CCE--EEEC-----CCCEEECCEEEEeeC
Confidence 999999999999999884 333 3443 667999999999998
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.72 E-value=4.3e-17 Score=143.20 Aligned_cols=155 Identities=25% Similarity=0.285 Sum_probs=123.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC----------------C-----CCCHHHHHHHHHHHHhcCcE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV----------------P-----SMDGEIRKQFQRSLEKQKMK 271 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------------~-----~~d~~~~~~~~~~l~~~Gv~ 271 (507)
..++|+|||||++|+++|..+++.|.+++++++..... . ...+++...+.++.++.|++
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~ 83 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT 83 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence 35789999999999999999999999999998654321 0 11357777788888888999
Q ss_pred EEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC-----CCCCCCCCCcccCceecCCCCeecCC-CCCCC
Q 010573 272 FMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR-----TPFTAGLGLDKIGVETDKMGRIPVNE-RFATN 345 (507)
Q Consensus 272 i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~-----~p~~~~l~~~~~gl~~~~~G~i~Vd~-~~~t~ 345 (507)
+... .|.+++..++...+.. +.....+|.+++++|. .|++.++ ..+++++++|+|.+|+ .++|+
T Consensus 84 i~~~-~V~~~~~~~~~~~v~~------~~~~~~~~~~~~a~g~~~~g~~p~~~~~---~~~veld~~G~i~~~~~~~~Ts 153 (192)
T d1vdca1 84 IFTE-TVTKVDFSSKPFKLFT------DSKAILADAVILAIGAVAKGHEPATKFL---DGGVELDSDGYVVTKPGTTQTS 153 (192)
T ss_dssp EECC-CCCEEECSSSSEEEEC------SSEEEEEEEEEECCCEEECCEEESCGGG---TTSSCBCTTSCBCCCTTSCBCS
T ss_pred eeee-eEEecccccCcEEecc------cceeeeeeeEEEEeeeeecccCchHHHh---cCceeecCCCeEEeCCCceEec
Confidence 8755 6778876666666653 4467889999999984 5777642 3468999999999996 68999
Q ss_pred CCCeEEecCCCCCCC-cHhHHHHHHHHHHHHHc
Q 010573 346 IPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLA 377 (507)
Q Consensus 346 ~~~IyA~GD~a~~~~-~~~~A~~~g~~aa~~i~ 377 (507)
+|+|||+|||.+.+. ....|..+|..||..+.
T Consensus 154 ~~GV~a~GDv~~~~~r~~v~A~g~G~~aA~~~~ 186 (192)
T d1vdca1 154 VPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE 186 (192)
T ss_dssp STTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeeecCCcccceEEEEEechHHHHHHHH
Confidence 999999999997664 68889999999998764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.71 E-value=9.5e-17 Score=129.49 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=95.4
Q ss_pred CceEecchhhcc-ccC-CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 198 EKRIVSSTGALA-LNE-VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 198 ~~~~~~~~~~~~-~~~-~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
...+++.....+ +.. .+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++++.+++.++++||+++++
T Consensus 4 ~~gv~~~~~~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~ 83 (121)
T d1mo9a2 4 AKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISG 83 (121)
T ss_dssp SBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESS
T ss_pred CCCEEeHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcC
Confidence 445666555432 232 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeec
Q 010573 276 TKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 276 ~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
+.+++++.++++....+.....++++++++|.|++|+|
T Consensus 84 ~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 84 SNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp CEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred CEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 99999998765443222222234667899999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.65 E-value=3e-16 Score=126.28 Aligned_cols=116 Identities=26% Similarity=0.449 Sum_probs=92.0
Q ss_pred CCCCccCCce-Eecchhhcccc-----CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHH
Q 010573 191 LPGITIDEKR-IVSSTGALALN-----EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQR 263 (507)
Q Consensus 191 ~pg~~~~~~~-~~~~~~~~~~~-----~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~ 263 (507)
+||.+.++.. +.+.+++..++ ..+++++|||+|++|+|+|..|++.|++||++++.+++++ .+|+++.+.+++
T Consensus 1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~ 80 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE 80 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence 4666543332 22334444332 3478999999999999999999999999999999999986 689999999999
Q ss_pred HHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEee
Q 010573 264 SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSA 312 (507)
Q Consensus 264 ~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~ 312 (507)
.++++||++++++.+++++.++ .+...+. ++++++||.|++|+
T Consensus 81 ~l~~~gv~~~~~~~v~~i~~~~-~~~~v~~-----dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 81 EMEANNITIATGETVERYEGDG-RVQKVVT-----DKNAYDADLVVVAV 123 (123)
T ss_dssp HHHTTTEEEEESCCEEEEECSS-BCCEEEE-----SSCEEECSEEEECS
T ss_pred HhhcCCeEEEeCceEEEEEcCC-CEEEEEe-----CCCEEECCEEEEEC
Confidence 9999999999999999998654 3333333 56789999999974
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.64 E-value=5.1e-16 Score=126.72 Aligned_cols=107 Identities=27% Similarity=0.405 Sum_probs=90.2
Q ss_pred ecchhhcccc---CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCcEEEcCce
Q 010573 202 VSSTGALALN---EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 202 ~~~~~~~~~~---~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
.+.+|+..+. ..+++++|||+|++|+|+|..|++.|.+||++++.+++++ .+++++.+.+++.++++||++++++.
T Consensus 20 r~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~ 99 (133)
T d1q1ra2 20 RTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQ 99 (133)
T ss_dssp SSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCC
T ss_pred CCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCe
Confidence 3455554433 3489999999999999999999999999999999999987 57999999999999999999999999
Q ss_pred EEEEEEcCC--eEE-EEEeecCCCceEEEEcCEEEEeec
Q 010573 278 VVGVDLSGD--GVK-LTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 278 v~~i~~~~~--~v~-v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
+++++...+ .+. +.+. +++++++|.||+|+|
T Consensus 100 v~~i~~~~~~~~v~~v~~~-----~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 100 VCGFEMSTDQQKVTAVLCE-----DGTRLPADLVIAGIG 133 (133)
T ss_dssp EEEEEECTTTCCEEEEEET-----TSCEEECSEEEECCC
T ss_pred EEEEEEeCCCceEEEEECC-----CCCEEECCEEEEeeC
Confidence 999987543 333 4444 567899999999998
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.4e-15 Score=133.12 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=117.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-----------C-----CCCHHHHHHHHHHHHhcCcEEEcCce
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-----------P-----SMDGEIRKQFQRSLEKQKMKFMLKTK 277 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------~-----~~d~~~~~~~~~~l~~~Gv~i~~~~~ 277 (507)
.++|+|||||++|++.|..+++.|.+|+++++.+... + ....++.+.+..++.+.++++... .
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H 83 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-C
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-e
Confidence 4689999999999999999999999999998754310 1 123567777788888899998754 6
Q ss_pred EEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC--CcccCceecCCCCeecCC-----CCCCCCCCeE
Q 010573 278 VVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--LDKIGVETDKMGRIPVNE-----RFATNIPGVY 350 (507)
Q Consensus 278 v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~--~~~~gl~~~~~G~i~Vd~-----~~~t~~~~Iy 350 (507)
|+.+...++...++. ....+.++.+++++|..|...... .-.-.++++ +|+|.+|+ .++|++|+||
T Consensus 84 V~~~~~~~~~~~v~~------~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~~T~v~gV~ 156 (190)
T d1trba1 84 INKVDLQNRPFRLNG------DNGEYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVF 156 (190)
T ss_dssp EEEEECSSSSEEEEE------SSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSSTTEE
T ss_pred eEEEecCCCcEEEEE------eeeeEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCcccccccccCeEE
Confidence 888877777666664 346889999999999776432100 111125555 48899985 4589999999
Q ss_pred EecCCCCCC-CcHhHHHHHHHHHHHHHc
Q 010573 351 AIGDVIPGP-MLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 351 A~GD~a~~~-~~~~~A~~~g~~aa~~i~ 377 (507)
|+|||++.+ ..+..|..+|..||.++.
T Consensus 157 aaGDv~~~~~~q~i~Aag~G~~AA~~a~ 184 (190)
T d1trba1 157 AAGDVMDHIYRQAITSAGTGCMAALDAE 184 (190)
T ss_dssp ECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred EeEEecCcceeEEEEEeccHHHHHHHHH
Confidence 999999754 578889999999997653
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.63 E-value=5.5e-16 Score=124.71 Aligned_cols=91 Identities=26% Similarity=0.509 Sum_probs=81.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTL 292 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~ 292 (507)
.+++++|||||++|+|+|..|+++|++||++++.+++++ +|+++.+.+.+.|+++||++++++.+++++ ++++ +
T Consensus 31 ~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~--~~~v---~ 104 (122)
T d1xhca2 31 NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEAN--EEGV---L 104 (122)
T ss_dssp HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEEC--SSEE---E
T ss_pred cCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-CCHHHHHHHHHHHHHCCcEEEeCCEEEEEe--CCEE---E
Confidence 368999999999999999999999999999999998875 899999999999999999999999999984 3332 2
Q ss_pred eecCCCceEEEEcCEEEEeecC
Q 010573 293 EPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 293 ~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
. +++.+++|.||+|+|.
T Consensus 105 ~-----~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 105 T-----NSGFIEGKVKICAIGI 121 (122)
T ss_dssp E-----TTEEEECSCEEEECCE
T ss_pred e-----CCCEEECCEEEEEEEe
Confidence 2 5678999999999995
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.63 E-value=1.8e-15 Score=131.59 Aligned_cols=156 Identities=20% Similarity=0.227 Sum_probs=108.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccCCCCCHHHH----------HHHHHHHHhcCcEEEcCceEEEE
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVPSMDGEIR----------KQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~~~d~~~~----------~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
+|+|+|||+|++|+|+|..|.+.+ .+||++++.+.++........ ......+...++.+..++. ..+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA-TGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE-EEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee-Eee
Confidence 689999999999999999999987 478999988876443221111 1112344556777775533 333
Q ss_pred EEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCccc------CceecCCCCeecCCC-CC-CCCCCeEEec
Q 010573 282 DLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKI------GVETDKMGRIPVNER-FA-TNIPGVYAIG 353 (507)
Q Consensus 282 ~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~------gl~~~~~G~i~Vd~~-~~-t~~~~IyA~G 353 (507)
.... ..+.+. +++++++|.+|+|+|.+|++..+..... ++..+. +++.++.. ++ ++.++||++|
T Consensus 81 ~~~~--~~~~~~-----~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~iG 152 (186)
T d1fcda1 81 DPDK--KLVKTA-----GGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDA-GWCPVDIKTFESSIHKGIHVIG 152 (186)
T ss_dssp CTTT--TEEEET-----TSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTT-SSEEBCSSSCBBSSSTTEEECT
T ss_pred eecc--ceeecc-----cceeeccceEEEEeccccchhhhhhhhhhheeccCccccc-ccccceeeeeecccccCceEec
Confidence 2222 223332 5678999999999999999886532211 233333 45555543 44 7899999999
Q ss_pred CCCCC---CCcHhHHHHHHHHHHHHHcC
Q 010573 354 DVIPG---PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 354 D~a~~---~~~~~~A~~~g~~aa~~i~~ 378 (507)
|++.. |..+..|.+||+.+|+||..
T Consensus 153 d~~~~~~~p~~~~~A~~q~~~~A~ni~~ 180 (186)
T d1fcda1 153 DASIANPMPKSGYSANSQGKVAAAAVVV 180 (186)
T ss_dssp TSEECTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCchHhHHHHHHHHHHHHHHH
Confidence 99944 55689999999999999963
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=9.2e-16 Score=126.10 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=94.2
Q ss_pred cchhhccccC---CCCeEEEEcCcHHHHHHHHHHH----hcCCeeEEEcccCccCC-CCCHHHHHHHHHHHHhcCcEEEc
Q 010573 203 SSTGALALNE---VPKKLVVIGAGYIGLEMGSVWA----RLGSEVTVVEFAADIVP-SMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 203 ~~~~~~~~~~---~~~~vvVvG~G~~g~e~A~~l~----~~g~~Vtlv~~~~~~~~-~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
+.+|+..+.+ .+++++|||||++|+|+|..|. +.|.+|+++++.+++++ .+|+++++.+.+.++++||++++
T Consensus 23 ~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~ 102 (137)
T d1m6ia2 23 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP 102 (137)
T ss_dssp SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred CHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 5556655443 3899999999999999999985 46899999999999987 58999999999999999999999
Q ss_pred CceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 275 KTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 275 ~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
++.|++++.+++++.+++. +++++++|.|++|+|.
T Consensus 103 ~~~V~~i~~~~~~~~v~l~-----~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 103 NAIVQSVGVSSGKLLIKLK-----DGRKVETDHIVAAVGL 137 (137)
T ss_dssp SCCEEEEEEETTEEEEEET-----TSCEEEESEEEECCCE
T ss_pred CCEEEEEEecCCEEEEEEC-----CCCEEECCEEEEeecC
Confidence 9999999998888888886 5679999999999994
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.60 E-value=4.2e-16 Score=131.73 Aligned_cols=145 Identities=14% Similarity=0.069 Sum_probs=113.6
Q ss_pred EccCCCCC---CCCCCccCCceEecchhhccccCCCCeEEEE---cCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCH
Q 010573 182 IATGSDVK---SLPGITIDEKRIVSSTGALALNEVPKKLVVI---GAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDG 255 (507)
Q Consensus 182 lAtG~~p~---~~pg~~~~~~~~~~~~~~~~~~~~~~~vvVv---G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~ 255 (507)
-|||+.|. ++||.+.+...++|+++++..+..+++.+|| |+|++|+|+|..|+++|++||++++.+.+++.+++
T Consensus 3 ~atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~ 82 (156)
T d1djqa2 3 NTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFT 82 (156)
T ss_dssp CSSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHT
T ss_pred cCCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccch
Confidence 38998873 5789887777899999999888776555555 99999999999999999999999999988887888
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCC
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGR 335 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~ 335 (507)
+....+.+.|++.||++++++.+.+++ ++.+.+... .....+.++.++|..|+... .+..+++.|. .
T Consensus 83 ~~~~~~~~~l~~~GV~i~~~~~v~~i~--~~~v~l~~~-------~~~~~~~v~~~~g~~~~~~~--~~~~~le~D~--v 149 (156)
T d1djqa2 83 LEYPNMMRRLHELHVEELGDHFCSRIE--PGRMEIYNI-------WGDGSKRTYRGPGVSPRDAN--TSHRWIEFDS--L 149 (156)
T ss_dssp TCHHHHHHHHHHTTCEEEETEEEEEEE--TTEEEEEET-------TCSCSCCCCCCTTSCSSCCC--CCCEEEECSE--E
T ss_pred hHHHHHHHHHhhccceEEeccEEEEec--CcceEEEee-------eccccceeeeeeEEEecccC--CccCcEecce--E
Confidence 888899999999999999999999995 444444421 22345677778888887775 4555566553 4
Q ss_pred eecC
Q 010573 336 IPVN 339 (507)
Q Consensus 336 i~Vd 339 (507)
+.++
T Consensus 150 ilvt 153 (156)
T d1djqa2 150 VLVT 153 (156)
T ss_dssp EEES
T ss_pred EEEe
Confidence 4444
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.56 E-value=3.1e-14 Score=130.52 Aligned_cols=119 Identities=20% Similarity=0.384 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeE--EEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC--------Cc
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGV--KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--------LD 324 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~--------~~ 324 (507)
.++.+.+.+.+++.||+++++++|++++..+++. .+.+.. ++.++.+|.||+|+|-.+... ++ ++
T Consensus 109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~----~~~~~~a~~VIiAtGG~S~p~-~G~~g~g~~~a~ 183 (253)
T d2gqfa1 109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV----NSTQWQCKNLIVATGGLSMPG-LGATPFGYQIAE 183 (253)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE----TTEEEEESEEEECCCCSSCGG-GTCCSHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec----CCEEEEeCEEEEcCCcccccc-cCCCchHHHHHH
Confidence 4667778888899999999999999998765532 222221 567899999999999654322 11 12
Q ss_pred ccCceec-----CCCCee---cCC-CCCC-CCCCeEEecCCCC-----CCCcHhHHHHHHHHHHHHHcC
Q 010573 325 KIGVETD-----KMGRIP---VNE-RFAT-NIPGVYAIGDVIP-----GPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 325 ~~gl~~~-----~~G~i~---Vd~-~~~t-~~~~IyA~GD~a~-----~~~~~~~A~~~g~~aa~~i~~ 378 (507)
+.++.+- ..|++. +|. .|++ .+||+|.+|.+.. +-..-++|...|..|++.|..
T Consensus 184 ~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 184 QFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSISR 252 (253)
T ss_dssp HTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHHHHHHHHHHHHHT
T ss_pred hccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhHhHHHHHHHHHhc
Confidence 2222221 113333 343 4664 6899999996662 122467899999999998853
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.53 E-value=7e-14 Score=127.92 Aligned_cols=116 Identities=19% Similarity=0.263 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCCC--------Cccc
Q 010573 256 EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--------LDKI 326 (507)
Q Consensus 256 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~--------~~~~ 326 (507)
++.+.+.+.+++.||+++++++|+++..+++.+. +.++ +++.+.+|.||+|+|...... ++ ++..
T Consensus 111 ~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~-----~g~~i~a~~vI~AtGg~S~p~-~Gs~g~g~~~a~~~ 184 (251)
T d2i0za1 111 SVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ-----TGEVLETNHVVIAVGGKSVPQ-TGSTGDGYAWAEKA 184 (251)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-----TCCEEECSCEEECCCCSSSGG-GSCSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeC-----CCCeEecCeEEEccCCccccc-cCCCcccchhcccc
Confidence 4556677888889999999999999988877765 5543 567899999999999654221 10 2233
Q ss_pred CceecCC--CCeec-----CCCCCCCCCCeEEecCCCCC-----CCcHhHHHHHHHHHHHHHc
Q 010573 327 GVETDKM--GRIPV-----NERFATNIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 327 gl~~~~~--G~i~V-----d~~~~t~~~~IyA~GD~a~~-----~~~~~~A~~~g~~aa~~i~ 377 (507)
+.++... +.+.+ ++...+..|++|++|++... -.....|...|+.|+..+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~ 247 (251)
T d2i0za1 185 GHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAG 247 (251)
T ss_dssp TCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHH
Confidence 3333210 11111 22223678999999998721 1234678899999998763
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=8.9e-14 Score=120.78 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=118.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc--cC--------C----CCCHHHHHHHHHHHHhcCcEEEcCceEEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD--IV--------P----SMDGEIRKQFQRSLEKQKMKFMLKTKVVGV 281 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~--~~--------~----~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 281 (507)
.|+|||||++|+++|..+++.|.+|++++++.. +. + ...+.+...+....++.+++......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 489999999999999999999999999986421 11 1 112566777778888889999888888777
Q ss_pred EEcCCe---EEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC
Q 010573 282 DLSGDG---VKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG 358 (507)
Q Consensus 282 ~~~~~~---v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~ 358 (507)
...... ..... .+..++.++.++.++|..++... ....++.....|.|.||...+|+.|+||++|||.+.
T Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~ 155 (184)
T d1fl2a1 83 IPAAVEGGLHQIET-----ASGAVLKARSIIVATGAKLPNTN--WLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTV 155 (184)
T ss_dssp ECCSSTTCCEEEEE-----TTSCEEEEEEEEECCCEEEESCG--GGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSC
T ss_pred cccccccceeeeee-----ecceeeecccccccccccccccc--cccccccccccceeccCCceeeeCCCEEEEeeecCc
Confidence 543321 12222 14568899999999998776654 344557777789999999999999999999999976
Q ss_pred C-CcHhHHHHHHHHHHHHHc
Q 010573 359 P-MLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 359 ~-~~~~~A~~~g~~aa~~i~ 377 (507)
+ .....|..+|..||..+.
T Consensus 156 ~~~~~vva~g~G~~aA~~~~ 175 (184)
T d1fl2a1 156 PYKQIIIATGEGAKASLSAF 175 (184)
T ss_dssp SSCCHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECcHHHHHHHH
Confidence 5 457788889888887654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.46 E-value=8.7e-14 Score=132.17 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=70.9
Q ss_pred CcEEEcCceEEEEEEcCCe------EEEEEeecCCCceEEEEcCEEEEeecCCCCCC--------CCCCccc-Cce-ecC
Q 010573 269 KMKFMLKTKVVGVDLSGDG------VKLTLEPAAGGEKTILEADVVLVSAGRTPFTA--------GLGLDKI-GVE-TDK 332 (507)
Q Consensus 269 Gv~i~~~~~v~~i~~~~~~------v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~--------~l~~~~~-gl~-~~~ 332 (507)
+.+++++++|++|+.+.++ ..+.......++.+.+++|.||+|++..+... .+..+.. .+. .+.
T Consensus 243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
T d1seza1 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY 322 (373)
T ss_dssp TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence 6788999999999775432 23444333445677899999999987432111 0000000 000 011
Q ss_pred CCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcC
Q 010573 333 MGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 333 ~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~ 378 (507)
++.+.+++.++|++||||++||+.+++ ....|+.+|+.||+.|+.
T Consensus 323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-~~~~A~~~G~~aA~~i~~ 367 (373)
T d1seza1 323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-SVGKALSSGCNAADLVIS 367 (373)
T ss_dssp HHHHHHHHHHHHHSTTEEECCSSSSCS-SHHHHHHHHHHHHHHHHH
T ss_pred CcEeecccccCCCCCCEEEEecCCCch-hHHHHHHHHHHHHHHHHH
Confidence 123335566789999999999999776 467899999999999864
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.44 E-value=6.9e-12 Score=119.64 Aligned_cols=123 Identities=13% Similarity=0.100 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCC-----C------
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGL-----G------ 322 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l-----~------ 322 (507)
..+...+.+..++.|++++.++++.++..+++++. +.+.+..+|+...+.++.||+|||--...... .
T Consensus 158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~ 237 (336)
T d2bs2a2 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT 237 (336)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHH
T ss_pred HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhh
Confidence 34555667777888999999999999888877765 55555667777789999999999843321100 0
Q ss_pred --CcccC-ceecCCCCeecCCCCCCCCCCeEEecCCCCC-----CC----cHhHHHHHHHHHHHHHc
Q 010573 323 --LDKIG-VETDKMGRIPVNERFATNIPGVYAIGDVIPG-----PM----LAHKAEEDGVACVEFLA 377 (507)
Q Consensus 323 --~~~~g-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~-----~~----~~~~A~~~g~~aa~~i~ 377 (507)
....| ..+.+.++|.+|+.++|+.|++|++||++.. .. +...+...+..+++...
T Consensus 238 ~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~ 304 (336)
T d2bs2a2 238 AIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFA 304 (336)
T ss_dssp HHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccccchhhccchhhhhcchhHHHHH
Confidence 11123 2355668999999999999999999998731 11 33445555555665544
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.43 E-value=8.8e-13 Score=125.21 Aligned_cols=41 Identities=39% Similarity=0.575 Sum_probs=37.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
.+||||||+|+||++||+.|++.|++|+||||.+..||...
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~ 63 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence 47999999999999999999999999999999888877543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.42 E-value=7.1e-14 Score=134.17 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=73.1
Q ss_pred HHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC-----CCCCccc-CceecCCCC
Q 010573 262 QRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA-----GLGLDKI-GVETDKMGR 335 (507)
Q Consensus 262 ~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-----~l~~~~~-gl~~~~~G~ 335 (507)
...+++.|++++++++|++|+.+++++++.+.. .+++++++++|.||+|++...... .+..... .+......+
T Consensus 242 ~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~-~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~ 320 (370)
T d2iida1 242 TAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYET-LSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY 320 (370)
T ss_dssp HHHHHHTGGGEESSCEEEEEEECSSCEEEEEEC-SSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred HHHHHhcCCccccCceEEEEEEeCCeEEEEEEe-cCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcc
Confidence 344567799999999999999999998887753 345667899999999986322110 0000000 000000000
Q ss_pred --eecCCCCCCCCCCeEEecCCCCCCC-cHhHHHHHHHHHHHHHc
Q 010573 336 --IPVNERFATNIPGVYAIGDVIPGPM-LAHKAEEDGVACVEFLA 377 (507)
Q Consensus 336 --i~Vd~~~~t~~~~IyA~GD~a~~~~-~~~~A~~~g~~aa~~i~ 377 (507)
...++.+.+...+||++||.+..+. ....|+.+|..||.+|-
T Consensus 321 ~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~ 365 (370)
T d2iida1 321 QFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVN 365 (370)
T ss_dssp HHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHH
Confidence 1122223344567999999886654 46779999999999873
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.37 E-value=1.4e-13 Score=130.13 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=71.7
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCc-------eecC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGV-------ETDK 332 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl-------~~~~ 332 (507)
.+.+..++.|++++++++|++|+.+++++++++.+ +++.+++++|.||+|++.......+ ....- ....
T Consensus 224 ~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~--~~~~~~~~ad~VV~a~p~~~~~~Ll--~~~~~~~~~~~~~~~~ 299 (347)
T d2ivda1 224 LIDALAASLGDAAHVGARVEGLAREDGGWRLIIEE--HGRRAELSVAQVVLAAPAHATAKLL--RPLDDALAALVAGIYN 299 (347)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEE--TTEEEEEECSEEEECSCHHHHHHHH--TTTCHHHHHHHHTCCB
T ss_pred HHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEc--CCeEEEEECCEEEECCCHHHHHHhc--cCCCHHHHHHhhccee
Confidence 34444556689999999999999888887777653 3455789999999999853222111 11100 0011
Q ss_pred CCCee---cCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHc
Q 010573 333 MGRIP---VNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 333 ~G~i~---Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 377 (507)
.|... ..+...++.|++|++||...+.. ...|+.+|+.+|+.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~p~~~~~G~~~~g~~-~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 300 LGHLERVAAIDAALQRLPGLHLIGNAYKGVG-LNDCIRNAAQLADALV 346 (347)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEECSTTTSCCS-HHHHHHHHHHHHHHHC
T ss_pred cCcccceecccccccCCCCEEEecccccCCC-HHHHHHHHHHHHHHhh
Confidence 11111 11222367899999999987654 5668999999999875
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=4.9e-12 Score=118.92 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=70.0
Q ss_pred HHHHHHhcCcEEEcCceEEEEEEcCC-------eEE-EEEeecCCCceEEEEcCEEEEeecCCCCCCCC-----------
Q 010573 261 FQRSLEKQKMKFMLKTKVVGVDLSGD-------GVK-LTLEPAAGGEKTILEADVVLVSAGRTPFTAGL----------- 321 (507)
Q Consensus 261 ~~~~l~~~Gv~i~~~~~v~~i~~~~~-------~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l----------- 321 (507)
+.+.++..+++++.++.++++..+++ .+. +...+..++....+.++.||+|+|--......
T Consensus 144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG 223 (305)
T d1chua2 144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG 223 (305)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence 34556778999999999999876543 233 44444455566778999999999843321110
Q ss_pred --CCcccCceecCCCCeecCCCCCCCCCCeEEecCCC
Q 010573 322 --GLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVI 356 (507)
Q Consensus 322 --~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a 356 (507)
....+|.++.+.++|.+|++.+|+.|++||+|+++
T Consensus 224 ~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~ 260 (305)
T d1chua2 224 IAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVS 260 (305)
T ss_dssp HHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGE
T ss_pred EeeccccceeeEecceeEECCcccCCCCCceecccEE
Confidence 02345778888899999999999999999999975
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.34 E-value=3.2e-11 Score=113.40 Aligned_cols=42 Identities=45% Similarity=0.678 Sum_probs=38.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
..|||||||+|++|++||++|++.|++|+||||.+..||...
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~ 56 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence 458999999999999999999999999999999888877543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.31 E-value=2.3e-11 Score=112.76 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G 334 (507)
..+...+.+.+++.|++++.+++|++++.+++++.|.+. + .++.+|.||+|+|...+. + +..+|+......
T Consensus 150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~-----~-g~i~a~~VViAaG~~s~~--l-~~~lg~~~~~~~ 220 (281)
T d2gf3a1 150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETA-----N-GSYTADKLIVSMGAWNSK--L-LSKLNLDIPDEH 220 (281)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEET-----T-EEEEEEEEEECCGGGHHH--H-GGGGTEECCTSC
T ss_pred cccccccccccccccccccCCcEEEEEEEECCEEEEEEC-----C-cEEEcCEEEECCCCcchh--h-HHhcCCcccccc
Confidence 456677888889999999999999999999888887763 3 479999999999975443 2 455666654322
Q ss_pred CeecCCCCCCCCCCe-EEecCCCCCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 335 RIPVNERFATNIPGV-YAIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 335 ~i~Vd~~~~t~~~~I-yA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
. .+. .....+++ .+.|-.-.+..+ +-..|+..++.++...
T Consensus 221 ~-~~~--~~P~~~~~~~~~g~~g~g~~~---~p~~G~~~~~~~~~~~ 261 (281)
T d2gf3a1 221 F-IID--LHPEHSNVVIAAGFSGHGFKF---SSGVGEVLSQLALTGK 261 (281)
T ss_dssp C-EEE--EETTEEEEEEEECCTTCCGGG---HHHHHHHHHHHHHHSC
T ss_pred c-eec--cccCCCCEEEEeccCCccccc---ChhHHHHHHHHHhcCC
Confidence 2 111 11223454 444543222222 3346777777766543
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=3e-11 Score=96.70 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=92.9
Q ss_pred cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 196 IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
+.+..+..+..+......+|+|+|||+|.+|+|.|..|++.+.+|++++|++.+ ..++.+.+.+.+..+..++.++++
T Consensus 9 ~~gkgV~yca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~--~~~~~~~~~~~~~~~~~~i~~~~~ 86 (126)
T d1trba2 9 FKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF--RAEKILIKRLMDKVENGNIILHTN 86 (126)
T ss_dssp TBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC--CCCHHHHHHHHHHHHTSSEEEECS
T ss_pred hcCCCEEEEEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc--cchhHHHHHHHHhhcccceeEecc
Confidence 344556655444444456899999999999999999999999999999999865 246778888888888899999999
Q ss_pred ceEEEEEEcCCeEE-EEEeecCCCc-eEEEEcCEEEEeec
Q 010573 276 TKVVGVDLSGDGVK-LTLEPAAGGE-KTILEADVVLVSAG 313 (507)
Q Consensus 276 ~~v~~i~~~~~~v~-v~~~~~~~g~-~~~i~~D~vi~a~G 313 (507)
+.+.++.+++.++. +++.+..+++ .+++++|-+++++|
T Consensus 87 ~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 87 RTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp CEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred eEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 99999998876554 7776544433 36799999999887
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=4.7e-11 Score=95.44 Aligned_cols=121 Identities=21% Similarity=0.292 Sum_probs=93.3
Q ss_pred CCCCCCc-cCCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHh
Q 010573 189 KSLPGIT-IDEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEK 267 (507)
Q Consensus 189 ~~~pg~~-~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~ 267 (507)
..+||.. ..+..+..+..+......+|+|+|||+|.+|+|.|..|++...+|++++|++.+.. ++... ++....
T Consensus 4 L~ipge~~~~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~--~~~~~---~~~~~~ 78 (126)
T d1fl2a2 4 MNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--DQVLQ---DKLRSL 78 (126)
T ss_dssp CCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS--CHHHH---HHHHTC
T ss_pred CCCCCHHHhcCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc--ccccc---cccccc
Confidence 3466654 44556776655555556699999999999999999999999999999999886532 33322 233344
Q ss_pred cCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 268 QKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 268 ~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
.+|+++++++++++.++++.+. +++.+..+++.+++++|.+++++|.
T Consensus 79 ~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 79 KNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp TTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred cceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 6799999999999998765554 7787777788889999999999884
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.26 E-value=6.9e-11 Score=111.49 Aligned_cols=42 Identities=26% Similarity=0.565 Sum_probs=37.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
+.+||||||+|+||++||++|++.|.+|+||||.+..||...
T Consensus 18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~ 59 (317)
T d1qo8a2 18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 59 (317)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGG
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence 458999999999999999999999999999999887776543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2e-12 Score=124.65 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=70.9
Q ss_pred HHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC-----CCCc--ccCceecC
Q 010573 260 QFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG-----LGLD--KIGVETDK 332 (507)
Q Consensus 260 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~-----l~~~--~~gl~~~~ 332 (507)
...+.+++.|.+++++++|++|..+++++.+++. +++++.+|.||+|++..--... +... +.--....
T Consensus 212 ~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~-----~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~ 286 (383)
T d2v5za1 212 VSERIMDLLGDRVKLERPVIYIDQTRENVLVETL-----NHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFP 286 (383)
T ss_dssp HHHHHHHHHGGGEEESCCEEEEECSSSSEEEEET-----TSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCC
T ss_pred HHHHHHHHcCCeEEecCcceEEEecCCeEEEEEC-----CCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhcc
Confidence 3445556789999999999999988888888765 5678999999999864211110 0000 00000011
Q ss_pred CCC-eecCCCCCCCCCCeEEecCCCC--CCCcHhHHHHHHHHHHHHHc
Q 010573 333 MGR-IPVNERFATNIPGVYAIGDVIP--GPMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 333 ~G~-i~Vd~~~~t~~~~IyA~GD~a~--~~~~~~~A~~~g~~aa~~i~ 377 (507)
.+. -...........+|+.+|+... .+.....|+.+|+.+|..++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~ 334 (383)
T d2v5za1 287 PGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREIL 334 (383)
T ss_dssp TTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred CCccchhhhhhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHH
Confidence 111 1122334455677999997653 23456779999999998775
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=1.6e-11 Score=107.78 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=73.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC-CCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR-GALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.||||||||||||+.||+.++|.|.+++||+++ +..|+++. .|............ +....|.. .
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~c----np~~gg~~kg~l~r----eid~kG~a-------v 66 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFL----PPKPPFPPGSLLER----AYDPKDER-------V 66 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSS----CCCSCCCTTCHHHH----HCCTTCCC-------H
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccccc----CCccccCCCcceee----eeeccchh-------h
Confidence 599999999999999999999999999999986 34554433 33221111111111 11111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEe--cCC-EEEEEccCCceEEEEeCeEEEccCCCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFI--SPS-EVSVDTIEGGNTVVKGKNIIIATGSDV 188 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~-~~~v~~~~g~~~~~~~d~lvlAtG~~p 188 (507)
..+.. +.-+......+++++.+++..+ +.+ -..|.+.+| ..+.++.||||||+--
T Consensus 67 ~a~ra----------Q~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G--~~~~AkaVILtTGTFL 124 (230)
T d2cula1 67 WAFHA----------RAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSFL 124 (230)
T ss_dssp HHHHH----------HHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTCS
T ss_pred hhHHH----------HHHHHHhhhcCHHHHhccceeeEecccceeeEEeccc--cEEEEeEEEEccCcce
Confidence 10000 0112334556899999877543 333 345788888 7899999999999843
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.24 E-value=8.3e-13 Score=122.71 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=73.2
Q ss_pred HhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC-----Cccc-CceecCCCCeecC
Q 010573 266 EKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG-----LDKI-GVETDKMGRIPVN 339 (507)
Q Consensus 266 ~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-----~~~~-gl~~~~~G~i~Vd 339 (507)
+..+..+..++.+..+...++.+.+++. +++.+.+|.++.+.........+. +... ...++..+...++
T Consensus 221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~-----~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~ 295 (347)
T d1b5qa1 221 KIVDPRLQLNKVVREIKYSPGGVTVKTE-----DNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVN 295 (347)
T ss_dssp CBCCTTEESSCCEEEEEECSSCEEEEET-----TSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCC
T ss_pred hhcccccccccccccccccCccEEEEEC-----CCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCcccc
Confidence 4457789999999999988888888875 567899999999876432111100 0000 0001222333333
Q ss_pred ----CCCCCCCCCeEEecCCCCC--CCcHhHHHHHHHHHHHHHcC
Q 010573 340 ----ERFATNIPGVYAIGDVIPG--PMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 340 ----~~~~t~~~~IyA~GD~a~~--~~~~~~A~~~g~~aa~~i~~ 378 (507)
+.++++.++||++||+++. |..++.|+.+|+.||+.|++
T Consensus 296 ~~~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~ 340 (347)
T d1b5qa1 296 RYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340 (347)
T ss_dssp HHHHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred ccchhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence 3356888999999999853 56788899999999998864
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=4.8e-11 Score=100.72 Aligned_cols=118 Identities=20% Similarity=0.352 Sum_probs=88.0
Q ss_pred CCCCCCccCCceEecchhhccc-cCCCCeEEEEcCcHHHHHHHHHHHhcCCee---------------------------
Q 010573 189 KSLPGITIDEKRIVSSTGALAL-NEVPKKLVVIGAGYIGLEMGSVWARLGSEV--------------------------- 240 (507)
Q Consensus 189 ~~~pg~~~~~~~~~~~~~~~~~-~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V--------------------------- 240 (507)
+++||.+ ..++++..+++.- ...+++|+|||||++|+|+|..+.+.|.++
T Consensus 5 p~IpG~d--~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (162)
T d1ps9a2 5 PPIDGID--HPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQG 82 (162)
T ss_dssp CCCBTTT--STTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTC
T ss_pred CCCCCCC--CCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhccccccc
Confidence 3566654 5668888777643 356899999999999999999999998642
Q ss_pred ----------EEEcc-cCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEE
Q 010573 241 ----------TVVEF-AADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309 (507)
Q Consensus 241 ----------tlv~~-~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi 309 (507)
+.+.. .......++..........++..|++++.++.+.++ +++++.+.. +|+..+++||.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i--~~~gv~~~~----~g~e~~i~aD~Vv 156 (162)
T d1ps9a2 83 MQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKI--DDDGLHVVI----NGETQVLAVDNVV 156 (162)
T ss_dssp CCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEE--ETTEEEEEE----TTEEEEECCSEEE
T ss_pred ceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEE--cCCCCEEec----CCeEEEEECCEEE
Confidence 33322 222333455666677788899999999999999998 466666653 3455679999999
Q ss_pred EeecC
Q 010573 310 VSAGR 314 (507)
Q Consensus 310 ~a~G~ 314 (507)
+|+|.
T Consensus 157 ~A~Gq 161 (162)
T d1ps9a2 157 ICAGQ 161 (162)
T ss_dssp ECCCE
T ss_pred ECCCC
Confidence 99995
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.20 E-value=3.3e-11 Score=112.13 Aligned_cols=125 Identities=24% Similarity=0.276 Sum_probs=75.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccc---cc---cchhhhhhhhHHHHHHHhhhhhCCcccC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNV---GC---IPSKALLHSSHMYHEAMHSFASHGVKFS 115 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~---~~---~p~~~~~~~~~~~~~~~~~~~~~g~~~~ 115 (507)
..+||+|||||++||++|.+|++.|.+|+|+|+++.+||+|... |+ .|+......... .. +......
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~--~~---~~~~~~~-- 78 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSE--EV---LQEWNWT-- 78 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCH--HH---HHHCCCC--
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccc--cc---cCCCCCc--
Confidence 46899999999999999999999999999999999999998532 11 111111000000 00 0000000
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEe----cCCEEEEEccCCceEEEEeCeEEEccCC
Q 010573 116 SVEVDLPAMMAQKDKAVSNLTRGIEGLFKKNKV--TYVKG-YGKFI----SPSEVSVDTIEGGNTVVKGKNIIIATGS 186 (507)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~~~----d~~~~~v~~~~g~~~~~~~d~lvlAtG~ 186 (507)
..... ...+..+++...++.++ .+..+ ++..+ +...+.|.+.++ ..+++|.||+|||.
T Consensus 79 ~~~p~-----------~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~--~~~~~~~~i~atG~ 143 (298)
T d1w4xa1 79 ERYAS-----------QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHG--DRIRARYLIMASGQ 143 (298)
T ss_dssp BSSCB-----------HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCCS
T ss_pred cccCc-----------cchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccc--cccccceEEEeecc
Confidence 00001 12233344555555555 24434 23332 345688888887 77899999999994
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.19 E-value=4.2e-11 Score=109.52 Aligned_cols=184 Identities=21% Similarity=0.279 Sum_probs=101.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC-----------------------------------CCCC------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV-----------------------------------PSMD------ 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~-----------------------------------~~~d------ 254 (507)
.++|||+|+.|+.+|..+++.|.+|.++++.. +. ..++
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 81 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE 81 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence 38999999999999999999999999998643 10 0111
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCce-EEEEEEcCCeEEEEEe------ecCCCceEEEEcCEEEEeecCCC-----
Q 010573 255 ------GEIRKQFQRSLEKQKMKFMLKTK-VVGVDLSGDGVKLTLE------PAAGGEKTILEADVVLVSAGRTP----- 316 (507)
Q Consensus 255 ------~~~~~~~~~~l~~~Gv~i~~~~~-v~~i~~~~~~v~v~~~------~~~~g~~~~i~~D~vi~a~G~~p----- 316 (507)
..+.+.+...+++.||+++.+.. ... ...+.+... +....+.+.+.+|.|++|||.+|
T Consensus 82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~----~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~ 157 (259)
T d1onfa1 82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLS----ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSP 157 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC------------------------------CBSSEEECCCCCBCCBCC
T ss_pred hhheeeeccccchhhhcccccceEEeeeccccc----ccccccccceeccccccCccceEEEeeeeEEEecCCCCccccc
Confidence 12233345667888999987632 110 111111100 00112446799999999999999
Q ss_pred CCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCCcHhHHHHHHHHHHHHHcCCCCCCCCCCccEEEEcCC
Q 010573 317 FTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHP 396 (507)
Q Consensus 317 ~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~ 396 (507)
+.+.+.++..++..+ ++.+.+|+..+|++.++|++||++........+..+...+..+-. ........+..+++++
T Consensus 158 ~~~~~~l~~~~i~ts-~~~~~~d~~~~t~Vig~gaiGdv~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 233 (259)
T d1onfa1 158 DTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEER---YLNKKENVTEDIFYNV 233 (259)
T ss_dssp TTTTSSCTTTTCCBS-SSCEEECTTCBCSSSSEEECSTTEEEC---------------------------------CBCC
T ss_pred cccccccccceeeec-ccccccccCCceeEeeEEEEEEeeehhhhhhhcchhhHhhhcCCc---cccccCCcceEEecCc
Confidence 566666677776655 578999999999999999999998544333322222211111111 1123444566677788
Q ss_pred CeeeecCCHHHH
Q 010573 397 EVASVGKTEEQV 408 (507)
Q Consensus 397 ~~~~vG~~~~~~ 408 (507)
++..|+.+..+.
T Consensus 234 ~~~~V~~~~G~~ 245 (259)
T d1onfa1 234 QLTPVAINAGRL 245 (259)
T ss_dssp CCHHHHHHHHHH
T ss_pred EEEEEEccccee
Confidence 877776655443
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.18 E-value=4.3e-11 Score=110.56 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMG 334 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G 334 (507)
..+...+.+.+++.|++++.+++|++++.+++.+.|++. + .++.||.||+|+|..... + ++.+|+.... +
T Consensus 151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~-----~-g~i~a~~vV~AaG~~s~~--l-~~~~G~~~~~-~ 220 (276)
T d1ryia1 151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTP-----S-GDVWANHVVVASGVWSGM--F-FKQLGLNNAD-G 220 (276)
T ss_dssp HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEET-----T-EEEEEEEEEECCGGGTHH--H-HHHTTCCCCS-S
T ss_pred ccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecC-----C-eEEEcCEEEECCCccHHH--H-HhhcCCCccc-c
Confidence 356667788889999999999999999988877777763 3 479999999999975432 1 3444554322 2
Q ss_pred CeecCCCCCCCCCCeE-EecCCCCCCCcHhHHHHHHHHHHHHHcCCC
Q 010573 335 RIPVNERFATNIPGVY-AIGDVIPGPMLAHKAEEDGVACVEFLAGKH 380 (507)
Q Consensus 335 ~i~Vd~~~~t~~~~Iy-A~GD~a~~~~~~~~A~~~g~~aa~~i~~~~ 380 (507)
...+..+ ...+++| +.|..-.+..+ +-..|+..+..+.+..
T Consensus 221 ~p~~~~~--p~~~~~~~~~g~~~~gi~~---~p~~g~~i~~~~~~~~ 262 (276)
T d1ryia1 221 KPYIGRH--PEDSRILFAAGHFRNGILL---APATGALISDLIMNKE 262 (276)
T ss_dssp CCEEEEE--TTEEEEEEEECCSSCTTTT---HHHHHHHHHHHHTTCC
T ss_pred cceeccc--cCCCCEEECCCCCCCeEEE---CccHHHHHHHHHhcCC
Confidence 2211111 1123444 55544322222 2334666777776553
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.4e-09 Score=101.96 Aligned_cols=99 Identities=23% Similarity=0.299 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecC-----CCCCCCCC--------Cc
Q 010573 259 KQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGR-----TPFTAGLG--------LD 324 (507)
Q Consensus 259 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~-----~p~~~~l~--------~~ 324 (507)
..+.+..+..+|+++.++.++++..+++.+. +...+..+|+-..+.++.||+|||- .+++.... ..
T Consensus 139 ~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~ 218 (311)
T d1kf6a2 139 TLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL 218 (311)
T ss_dssp HHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHH
T ss_pred hHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHH
Confidence 3445555667899999999999988887776 4444445566667899999999983 22221100 22
Q ss_pred ccCceecCCCCeecCCCCCCCCCCeEEecCCCC
Q 010573 325 KIGVETDKMGRIPVNERFATNIPGVYAIGDVIP 357 (507)
Q Consensus 325 ~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~ 357 (507)
.+|.++.+..+|.++++..++.+++|+.|++.+
T Consensus 219 ~aGa~l~dme~iq~~p~~~~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 219 SHGVPLRDMGGIETDQNCETRIKGLFAVGECSS 251 (311)
T ss_dssp TTTCCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred hcccceeecccccccccchhcccCCCcCcceee
Confidence 446666666789999999999999999999873
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.16 E-value=1.3e-12 Score=118.18 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=36.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCC-------CcEEEEecCCCCCcee
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLG-------LKTTCIEKRGALGGTC 82 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g-------~~V~lie~~~~~GG~~ 82 (507)
.++|+|||||||||+||++|+++| ++|+|+|+.+.+||.+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~ 48 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV 48 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCee
Confidence 368999999999999999999987 5799999999999964
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=6.6e-11 Score=112.29 Aligned_cols=61 Identities=11% Similarity=0.084 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEc-CCeEE-EEEeecCCCceEEEEcCEEEEeecCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVK-LTLEPAAGGEKTILEADVVLVSAGRT 315 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~ 315 (507)
..+...+.+..++.+++++.++.+..+..+ ++.+. .......+++-..+.++.||+|+|--
T Consensus 143 ~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~ 205 (330)
T d1neka2 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA 205 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCc
Confidence 456666777778899999999998887654 33332 33334456667789999999999943
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.10 E-value=8.5e-11 Score=102.52 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=104.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCccCC---------CCCHHHHHHHHHHHHhcCcEEEcCceEEEEE
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVP---------SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVD 282 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~---------~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 282 (507)
.+++|+|||+|++|+++|..|+++|. +|+++++.+.+.. .................+.++.....+...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 81 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSEN- 81 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTT-
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccc-
Confidence 47999999999999999999999997 5999999987642 234455555566666777887766554211
Q ss_pred EcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCC--CcccCceecCCCCeecCC-CCCCCCCCeEEecCCCCCC
Q 010573 283 LSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLG--LDKIGVETDKMGRIPVNE-RFATNIPGVYAIGDVIPGP 359 (507)
Q Consensus 283 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~--~~~~gl~~~~~G~i~Vd~-~~~t~~~~IyA~GD~a~~~ 359 (507)
.. ... ......+|.+++++|..+...... ...........+....+. .++|+.+.+|++||+++++
T Consensus 82 ----~~--~~~-----~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~ 150 (196)
T d1gtea4 82 ----EI--TLN-----TLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA 150 (196)
T ss_dssp ----SB--CHH-----HHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC
T ss_pred ----ee--eee-----hhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCc
Confidence 00 000 122345788899998655433211 111112223334444444 4789999999999999988
Q ss_pred CcHhHHHHHHHHHHHHHc
Q 010573 360 MLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 360 ~~~~~A~~~g~~aa~~i~ 377 (507)
..+..|..+|+.++..+.
T Consensus 151 ~~av~a~~~g~~~a~~v~ 168 (196)
T d1gtea4 151 NTTVESVNDGKQASWYIH 168 (196)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhhhehhHh
Confidence 889999999998887764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.10 E-value=2.7e-10 Score=89.75 Aligned_cols=94 Identities=24% Similarity=0.328 Sum_probs=70.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.-. ++
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-------------------------------------~d-- 61 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-------------------------------------YD-- 61 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-------------------------------------cc--
Confidence 358999999999999999999999999999996654110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG 185 (507)
..+...+.+.+++.||+++.+ .+..++.....+...+++..++.+|.+++|+|
T Consensus 62 ----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 62 ----------SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp ----------HHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred ----------chhHHHHHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 112233345677789999988 46667766666665556567899999999998
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.07 E-value=4.9e-10 Score=107.88 Aligned_cols=45 Identities=33% Similarity=0.598 Sum_probs=38.9
Q ss_pred cCCCCCCCcEEEECCChHHHHHHHHHHH------CCCcEEEEecCCCCCce
Q 010573 37 FASASDENDVVVIGGGPGGYVAAIKAAQ------LGLKTTCIEKRGALGGT 81 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~aGl~aA~~l~~------~g~~V~lie~~~~~GG~ 81 (507)
|..+..+||||||||||||++||+.|++ .|++|+||||...+|..
T Consensus 26 m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k 76 (380)
T d2gmha1 26 MERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH 76 (380)
T ss_dssp CCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred cccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence 4444557999999999999999999998 79999999998887754
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=6.1e-10 Score=87.68 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=68.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+++... .+
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-------------------------------------~d-- 61 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-------------------------------------FD-- 61 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-------------------------------------cc--
Confidence 357999999999999999999999999999996544211 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe---cCCEEEEEccCCceEEEEeCeEEEccC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---SPSEVSVDTIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---d~~~~~v~~~~g~~~~~~~d~lvlAtG 185 (507)
..+.+.+.+.+++.||+++.+. +..+ +...+.+.+++| +++.+|.||+|||
T Consensus 62 ----------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~D~vi~a~G 116 (116)
T d1gesa2 62 ----------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG--RSETVDCLIWAIG 116 (116)
T ss_dssp ----------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred ----------hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCC--CEEEcCEEEEecC
Confidence 1122334566777899999884 3333 233567888888 6889999999998
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=1.3e-10 Score=100.26 Aligned_cols=42 Identities=38% Similarity=0.692 Sum_probs=37.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVG 86 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~ 86 (507)
.|||+||||||+|++||..+++.|++|+|||++ .||.+.+..
T Consensus 1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~~~ 42 (184)
T d1fl2a1 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILDTV 42 (184)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGGCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccccc
Confidence 389999999999999999999999999999973 688776543
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.04 E-value=3.9e-10 Score=107.15 Aligned_cols=44 Identities=30% Similarity=0.442 Sum_probs=38.9
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~ 84 (507)
..+.+|+|||||++|++||..|++.+ .+|+|+||++.+||+|.+
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~ 47 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY 47 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence 34568999999999999999998875 699999999999999864
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=6.4e-11 Score=102.84 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
+.+||+||||||+|++||..|+|.|.+|+|||+ ...||.|.....+.... ++.. ....
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~-~~~~g~~~~~~~i~~~~------------------~~~~---~~~~ 61 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTTTEVENWP------------------GDPN---DLTG 61 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC-SSTTGGGGGCSBCCCST------------------TCCS---SCBH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEe-ecccccccccchhhhhh------------------cccc---ccch
Confidence 357999999999999999999999999999998 45577666544332110 0000 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec--CCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
..+.........+.++++..+.+..++ .....+.... ..+.++.+++|+|..++
T Consensus 62 -----------~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~---~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 62 -----------PLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDN---GEYTCDALIIATGASAR 117 (190)
T ss_dssp -----------HHHHHHHHHHHHHTTCEEECCCEEEEECSSSSEEEEESS---CEEEEEEEEECCCEEEC
T ss_pred -----------HHHHHHHHHHHHhcCcEEecceeEEEecCCCcEEEEEee---eeEeeeeeeeecceeee
Confidence 112222334556677888777665543 3334444433 47889999999998663
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.04 E-value=1.3e-09 Score=86.21 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=67.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|||+.+.+-.. . ++
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~-------------~-----------------------~~-- 71 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-------------A-----------------------AP-- 71 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-------------T-----------------------SC--
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc-------------c-----------------------CC--
Confidence 468999999999999999999999999999996543110 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG 185 (507)
..+...+.+.+++.||+++.+. +..+.... +.+++| +++.+|.+|+|+|
T Consensus 72 ----------~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~--v~l~dg--~~i~~D~vi~a~G 121 (121)
T d1d7ya2 72 ----------ATLADFVARYHAAQGVDLRFERSVTGSVDGV--VLLDDG--TRIAADMVVVGIG 121 (121)
T ss_dssp ----------HHHHHHHHHHHHTTTCEEEESCCEEEEETTE--EEETTS--CEEECSEEEECSC
T ss_pred ----------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCE--EEECCC--CEEECCEEEEeeC
Confidence 1122334567788899998884 44455543 456777 7899999999998
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.7e-11 Score=107.20 Aligned_cols=135 Identities=17% Similarity=0.160 Sum_probs=75.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC--cEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhh-hhCCcccCccc
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSF-ASHGVKFSSVE 118 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 118 (507)
..+++||||||++|+.+|..|++.+. +|++|+++...-... ..-++.+.............+ ...+... ...
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r----~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR----PPLSKELWFSDDPNVTKTLRFKQWNGKER-SIY 77 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS----GGGGTGGGCC--CTHHHHCEEECTTSCEE-ESB
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccc----cccceecccccCchhhhhhhhhhcccchh-hhh
Confidence 35789999999999999999998864 699999865432210 000111111000000000000 0000000 000
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCCC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSLP 192 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~p 192 (507)
+...+.. ........+++.+|+++.+. +..+|.+...|.+++| +++.||+||+|||+.|+.++
T Consensus 78 ~~~~~~~---------~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG--~~i~~d~lViAtG~~~~~~~ 141 (213)
T d1m6ia1 78 FQPPSFY---------VSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTEPNVE 141 (213)
T ss_dssp SSCGGGS---------BCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEEECCT
T ss_pred cCChhhh---------hhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccc--eeeccceEEEeeeeecchhh
Confidence 0000000 00000123456799999884 7788877778888998 78999999999998876443
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.99 E-value=3.2e-11 Score=108.29 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=35.4
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCcee
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTC 82 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~ 82 (507)
.+|+||||||||++||.+|++. |++|+|+|+.+.+||.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~ 42 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV 42 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcee
Confidence 3899999999999999999876 78999999999999864
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.98 E-value=6.5e-09 Score=82.84 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=85.1
Q ss_pred CceEecchhhcc--ccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 198 EKRIVSSTGALA--LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 198 ~~~~~~~~~~~~--~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
+..+..+..+.. ....+|+|+|||+|.+|+|.|..|++...+||+++|++.+-. ++... .+.+...+|+++++
T Consensus 16 gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra--~~~~~---~~l~~~~nI~v~~~ 90 (130)
T d1vdca2 16 NRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIMQ---QRALSNPKIDVIWN 90 (130)
T ss_dssp TTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHHH---HHHHTCTTEEEECS
T ss_pred CCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc--chhhh---hccccCCceEEEec
Confidence 345555555443 235689999999999999999999999999999999987633 33333 34445668999999
Q ss_pred ceEEEEEEcCC--eE-EEEEeecCCCceEEEEcCEEEEee
Q 010573 276 TKVVGVDLSGD--GV-KLTLEPAAGGEKTILEADVVLVSA 312 (507)
Q Consensus 276 ~~v~~i~~~~~--~v-~v~~~~~~~g~~~~i~~D~vi~a~ 312 (507)
+.+.++.+++. .+ .+.+++..+++.+++++|-|++++
T Consensus 91 ~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 91 SSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred cEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 99999998753 34 477777778888999999999874
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=2e-10 Score=104.73 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=42.2
Q ss_pred CCCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 39 SASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 39 ~~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
+|+++|||||||||++|++||..|++.|++|+|+|+++.+||.|.
T Consensus 1 ~m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~ 45 (297)
T d2bcgg1 1 TIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAA 45 (297)
T ss_dssp CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGC
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceE
Confidence 367889999999999999999999999999999999999999874
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.96 E-value=1.5e-09 Score=100.01 Aligned_cols=50 Identities=32% Similarity=0.434 Sum_probs=45.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHH-CCCcEEEEecCCCCCceeccccccchh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQ-LGLKTTCIEKRGALGGTCLNVGCIPSK 91 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~~GG~~~~~~~~p~~ 91 (507)
.++||+||||||||++||++|++ .|++|+|+|+++.+||.|.+.+|.+++
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~ 82 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSA 82 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCH
Confidence 35899999999999999999987 599999999999999999988886654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.95 E-value=2e-09 Score=86.83 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=67.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+.+.... ..
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~-------------~~------------------------- 76 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERV-------------TA------------------------- 76 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT-------------SC-------------------------
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccc-------------cc-------------------------
Confidence 4689999999999999999999999999999976542110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec----CCE-EEEEccCCceEEEEeCeEEEccC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS----PSE-VSVDTIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d----~~~-~~v~~~~g~~~~~~~d~lvlAtG 185 (507)
..+...+.+.+++.||+++.+. +..++ ... ..+.+++| .++.+|.||+|+|
T Consensus 77 ----------~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G--~~i~~D~vi~a~G 133 (133)
T d1q1ra2 77 ----------PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG--TRLPADLVIAGIG 133 (133)
T ss_dssp ----------HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTS--CEEECSEEEECCC
T ss_pred ----------hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCC--CEEECCEEEEeeC
Confidence 0112233456778899999874 44332 222 34678888 7899999999998
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=1.7e-09 Score=91.51 Aligned_cols=125 Identities=21% Similarity=0.190 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----------CCCHHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------SMDGEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
..+|+|+|||+|+.|++.|..|++.|.+|+++++.+.+.. ....++.+.+.+.+++.||++++++.|+.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~ 120 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA 120 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence 4489999999999999999999999999999999886531 12346777888889999999999987742
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
+ ....+|.||+|+|..|.... ..+++ . -.++-.+|..-....
T Consensus 121 ------------------~-~~~~~d~vilAtG~~~~~~~----~pg~~---~------------g~~v~vigggd~a~~ 162 (179)
T d1ps9a3 121 ------------------D-QLQAFDETILASGIPNRALA----QPLID---S------------GKTVHLIGGCDVAME 162 (179)
T ss_dssp ------------------S-SSCCSSEEEECCCEECCTTH----HHHHT---T------------TCCEEECGGGTCCSS
T ss_pred ------------------c-ccccceeEEEeecCCCcccc----cchhc---c------------CCEEEEECCcHhhhh
Confidence 0 13457999999999875532 11111 1 144545553322233
Q ss_pred -cHhHHHHHHHHHHH
Q 010573 361 -LAHKAEEDGVACVE 374 (507)
Q Consensus 361 -~~~~A~~~g~~aa~ 374 (507)
....|..+|..++-
T Consensus 163 ~~~~~Av~~G~~va~ 177 (179)
T d1ps9a3 163 LDARRAIAQGTRLAL 177 (179)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ccchhhhhccCEEEE
Confidence 35678888866553
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.90 E-value=1.8e-08 Score=79.31 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=69.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
...+++|||||+.|+..|..+++.|.+|+++++.+++- |. +
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll---------~~----------------------------~-- 61 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL---------PA----------------------------V-- 61 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS---------TT----------------------------S--
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC---------Cc----------------------------c--
Confidence 34689999999999999999999999999999965431 10 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCC-ceEEEEeCeEEEccC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEG-GNTVVKGKNIIIATG 185 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g-~~~~~~~d~lvlAtG 185 (507)
-..+...+.+.+++.|++++.+. +..+ +.+.+.+...++ +.+++.+|.|++|+|
T Consensus 62 ----------d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 62 ----------DEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp ----------CHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred ----------cchhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 01233445667888999999884 4433 455556665443 346899999999998
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.90 E-value=2.7e-08 Score=92.65 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 255 GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 255 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
..+...+.+..++.|++++.+++|++++.+++++. |.+ +..++.||.||+|+|...
T Consensus 148 ~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T------~~g~i~a~~VV~aaG~~s 204 (305)
T d1pj5a2 148 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQT------ADGVIPADIVVSCAGFWG 204 (305)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE------TTEEEECSEEEECCGGGH
T ss_pred hhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEec------cceeEECCEEEEecchhH
Confidence 45677788888899999999999999999888876 554 234799999999999764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.89 E-value=1e-09 Score=94.28 Aligned_cols=105 Identities=24% Similarity=0.254 Sum_probs=69.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
.+|||||||++|+.+|..|++.+ .+|+|||+++.+..... . .... . ...........
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~------~-------~~~~--~-----~~~~~~~~~~~- 61 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYL------S-------NEVI--G-----GDRKLESIKHG- 61 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTT------H-------HHHH--H-----TSSCGGGGEEC-
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccc------c-------cccc--c-----hhhhhhhhhhh-
Confidence 48999999999999999999986 58999999764322100 0 0000 0 00000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
.......++++..+.....+.....+.+.++ +.+.||+||+|||.+|.
T Consensus 62 ------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~i~~D~li~atG~~~~ 109 (186)
T d1fcda1 62 ------------------YDGLRAHGIQVVHDSATGIDPDKKLVKTAGG--AEFGYDRCVVAPGIELI 109 (186)
T ss_dssp ------------------SHHHHTTTEEEECCCEEECCTTTTEEEETTS--CEEECSEEEECCCEEEC
T ss_pred ------------------hhhccccceeEeeeeeEeeeeccceeecccc--eeeccceEEEEeccccc
Confidence 1234456788888887777776666777776 78999999999998774
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.86 E-value=7.2e-09 Score=82.20 Aligned_cols=88 Identities=23% Similarity=0.309 Sum_probs=65.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.+++|||||+.|+.+|..|++.|.+|+|+++.+.+.+ ++
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--------------------------------------~d--- 71 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--------------------------------------LD--- 71 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--------------------------------------CC---
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--------------------------------------CC---
Confidence 5799999999999999999999999999999654311 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGS 186 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~ 186 (507)
..+...+.+.+++.||+++.+. ...++.+.+ +.++ ..+.+|.+|+|+|.
T Consensus 72 ---------~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v---~~~~--~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 72 ---------EELSNMIKDMLEETGVKFFLNSELLEANEEGV---LTNS--GFIEGKVKICAIGI 121 (122)
T ss_dssp ---------HHHHHHHHHHHHHTTEEEECSCCEEEECSSEE---EETT--EEEECSCEEEECCE
T ss_pred ---------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEE---EeCC--CEEECCEEEEEEEe
Confidence 1122233456778899999884 556666553 2345 68999999999994
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.85 E-value=3.2e-09 Score=92.43 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=71.9
Q ss_pred CcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
++|+|||||++|+.+|..|++. +.+|+++++++.+.. ..| ... .. +...-........
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~----~~~-------~~~---~~----l~~~~~~~~~~~~-- 60 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF----LSA-------GMQ---LY----LEGKVKDVNSVRY-- 60 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB----CGG-------GHH---HH----HTTSSCCGGGSBS--
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc----ccc-------Ccc---hh----hcccccchHHHHH--
Confidence 4799999999999999999997 568999999654421 111 000 00 0000000011110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCC--EEEEE-ccCCceEEEEeCeEEEccCCCCCCCCC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPS--EVSVD-TIEGGNTVVKGKNIIIATGSDVKSLPG 193 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~--~~~v~-~~~g~~~~~~~d~lvlAtG~~p~~~pg 193 (507)
...+.+++.+++++.+ .+..++.+ .+++. +.+|+...+.||.+|+|+|+.|..+++
T Consensus 61 ----------------~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g 120 (198)
T d1nhpa1 61 ----------------MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDG 120 (198)
T ss_dssp ----------------CCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC
T ss_pred ----------------hhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecccc
Confidence 1134567789999877 45666644 44443 466777889999999999988765544
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.84 E-value=2.2e-08 Score=82.40 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCe-eEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSE-VTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK- 289 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~-Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~- 289 (507)
..+++|+|||||.+|+|+|..+.+.|++ |++++|++.......+. -...+...+++++.+..+.++...++...
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~~----~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~ 118 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPE----EVELAKEEKCEFLPFLSPRKVIVKGGRIVA 118 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHH----HHHHHHHTTCEEECSEEEEEEEEETTEEEE
T ss_pred cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccchh----heeecccccceeEeccccEEEEecCCceEE
Confidence 3478999999999999999999999865 88998887652222222 12234567899999999888877665433
Q ss_pred EEE---eecC-------CCceEEEEcCEEEEeecC
Q 010573 290 LTL---EPAA-------GGEKTILEADVVLVSAGR 314 (507)
Q Consensus 290 v~~---~~~~-------~g~~~~i~~D~vi~a~G~ 314 (507)
+.+ +..+ +++..+++||.|++|+|.
T Consensus 119 v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 119 VQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 222 1111 234567999999999983
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.81 E-value=8.5e-09 Score=86.95 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=82.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHHH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAM 124 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 124 (507)
+|+|||||++|+.+|..|++ +.+|+|+++++..... ........... +.....
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~--------------~~~~~~~~~~~-----~~~~~~------- 54 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYS--------------KPMLSHYIAGF-----IPRNRL------- 54 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCC--------------STTHHHHHTTS-----SCGGGG-------
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccccc--------------ccchhhhhhhh-----hhhhhh-------
Confidence 69999999999999999976 6899999986543211 00000000000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCCEEEEEccCCceEEEEeCeEEEccCCCCCCC---CCCccCCc-
Q 010573 125 MAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVKSL---PGITIDEK- 199 (507)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~---pg~~~~~~- 199 (507)
.....+++.+.+++++.+. +..++.....+.. ++ .++.||.+|+|+|..|..+ .++..+..
T Consensus 55 -----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~-~~--~~i~~D~li~a~G~~~~~~~~~~gl~~~~~i 120 (167)
T d1xhca1 55 -----------FPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVIT-EK--GEVPYDTLVLATGAPNVDLARRSGIHTGRGI 120 (167)
T ss_dssp -----------CSSCHHHHHHHTEEEECSCCEEEEETTTTEEEE-SS--CEEECSEEEECCCEECCHHHHHTTCCBSSSE
T ss_pred -----------hHHHHHHHHhccceeeeeccccccccccccccc-cc--cccccceeEEEEEecCCchhhhcCceeCCce
Confidence 0011345566788888764 5666655544443 33 4689999999999876422 12322111
Q ss_pred -----------eEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHh
Q 010573 200 -----------RIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWAR 235 (507)
Q Consensus 200 -----------~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~ 235 (507)
.++-..|+. ..+..++|++..|++.|..+++
T Consensus 121 ~v~~~~~t~~~~i~aiGD~~-----~~~~~~~~~~~~a~~~a~~~a~ 162 (167)
T d1xhca1 121 LIDDNFRTSAKDVYAIGDCA-----EYSGIIAGTAKAAMEQARVLAD 162 (167)
T ss_dssp ECCTTSBCSSTTEEECGGGE-----EBTTBCCCSHHHHHHHHHHHHH
T ss_pred eeccccEecCCCeEEeeecc-----cCCCeEEChHHHHHHHHHHHHH
Confidence 111111111 1123467888999998887765
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.80 E-value=2.6e-08 Score=78.27 Aligned_cols=92 Identities=24% Similarity=0.320 Sum_probs=66.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..++++|.+|+|+|+.+++... ++
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-------------------------------------~d-- 62 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-------------------------------------FE-- 62 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-------------------------------------SC--
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-------------------------------------cc--
Confidence 468999999999999999999999999999997654211 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEc-cCCceEEEEeCeEEEc
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDT-IEGGNTVVKGKNIIIA 183 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~-~~g~~~~~~~d~lvlA 183 (507)
..+...+.+.+++.||+++.+. +..+ +.+.+.+.. .+|+.+++.+|.|++.
T Consensus 63 ----------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 63 ----------KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred ----------chhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 1122334567788899999885 4444 344555554 4555678999999973
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.77 E-value=4.5e-08 Score=76.92 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=66.1
Q ss_pred CcEEEECCChHHHHHHHHHHH---CCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQ---LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVD 120 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~---~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 120 (507)
.+++|||||+.|+.+|..+++ .|.+|+++++.+.+... ++
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-------------------------------------~d 61 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-------------------------------------FD 61 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-------------------------------------SC
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-------------------------------------cc
Confidence 589999999999999977655 48899999996543110 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe---cCCEEEEEccCCceEEEEeCeEEEccC
Q 010573 121 LPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---SPSEVSVDTIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---d~~~~~v~~~~g~~~~~~~d~lvlAtG 185 (507)
..+...+.+.+++.+|+++.+. +..+ +.....+.+++| ..+.+|.||+|+|
T Consensus 62 ------------~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g--~~i~~D~Vi~a~G 116 (117)
T d1feca2 62 ------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG--AEADYDVVMLAIG 116 (117)
T ss_dssp ------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred ------------chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCC--CEEEcCEEEEecC
Confidence 1123344567888999999884 4444 233456788888 6799999999998
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.76 E-value=9.9e-08 Score=90.07 Aligned_cols=165 Identities=17% Similarity=0.113 Sum_probs=108.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC--CeeEEEcccCccCC----------------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG--SEVTVVEFAADIVP---------------------------------------- 251 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g--~~Vtlv~~~~~~~~---------------------------------------- 251 (507)
-|+|+|||+|++|+-+|..|++.+ .+|+++++++.+..
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y 83 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 83 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence 379999999999999999998876 59999999876410
Q ss_pred ------------------------CC--CHHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCce-EEEE
Q 010573 252 ------------------------SM--DGEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEK-TILE 304 (507)
Q Consensus 252 ------------------------~~--d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~-~~i~ 304 (507)
.+ ..++.+.+....+..+..++++++|++++.++++..|++.+.+.++. ....
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~ 163 (335)
T d2gv8a1 84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDI 163 (335)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEE
T ss_pred hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEE
Confidence 00 03556666666667788899999999999999998888876554433 3567
Q ss_pred cCEEEEeecCC--CCCCCCC---------CcccCceecCCCCeecCCCC---CCCCCCeEEecCCCCCCCcHhHHHHHHH
Q 010573 305 ADVVLVSAGRT--PFTAGLG---------LDKIGVETDKMGRIPVNERF---ATNIPGVYAIGDVIPGPMLAHKAEEDGV 370 (507)
Q Consensus 305 ~D~vi~a~G~~--p~~~~l~---------~~~~gl~~~~~G~i~Vd~~~---~t~~~~IyA~GD~a~~~~~~~~A~~~g~ 370 (507)
+|.||+|+|.. |+...+. ++.....+-.+|.-..+-+. ....|.+..+|=...... ......|+.
T Consensus 164 ~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~-~~~~e~Qa~ 242 (335)
T d2gv8a1 164 FDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVP-FPTSQAQAA 242 (335)
T ss_dssp ESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCH-HHHHHHHHH
T ss_pred eeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEEec-CCchHHHHH
Confidence 99999999954 4432210 01111111111111111111 135678888885554433 344667888
Q ss_pred HHHHHHcCC
Q 010573 371 ACVEFLAGK 379 (507)
Q Consensus 371 ~aa~~i~~~ 379 (507)
.++.-+.|.
T Consensus 243 ~~a~~~~g~ 251 (335)
T d2gv8a1 243 FLARVWSGR 251 (335)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHcCC
Confidence 888888776
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.75 E-value=4.4e-09 Score=91.04 Aligned_cols=110 Identities=19% Similarity=0.150 Sum_probs=66.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCC----ceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALG----GTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~G----G~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (507)
++||+||||||+|++||..|+|.|.+++|+|+..... +......... ...++.. .
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~---~ 63 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVE------------------NFPGFPE---G 63 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEEC------------------CSTTCTT---C
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhh------------------ccccccc---c
Confidence 4799999999999999999999999999999854332 2111000000 0000000 0
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEec--CCEEEEEccCCceEEEEeCeEEEccCCC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFIS--PSEVSVDTIEGGNTVVKGKNIIIATGSD 187 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d--~~~~~v~~~~g~~~~~~~d~lvlAtG~~ 187 (507)
... ..+...+.+..++.++++..+.+..++ .....+.+.. ..+.+|.+++++|..
T Consensus 64 ~~~-----------~el~~~~~~q~~~~g~~i~~~~V~~~~~~~~~~~v~~~~---~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 64 ILG-----------VELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDS---KAILADAVILAIGAV 120 (192)
T ss_dssp EEH-----------HHHHHHHHHHHHHTTCEEECCCCCEEECSSSSEEEECSS---EEEEEEEEEECCCEE
T ss_pred ccc-----------hHHHHHHHHHHHhhcceeeeeeEEecccccCcEEecccc---eeeeeeeEEEEeeee
Confidence 111 112222344556778888877654443 3334454332 678899999999953
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.74 E-value=2.3e-08 Score=79.25 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=67.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccCh
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDL 121 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 121 (507)
...+++|||||+.|+.+|..+++.|.+|+++|+.+.+-.. .+
T Consensus 25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-------------------------------------~d- 66 (125)
T d1ojta2 25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-------------------------------------AD- 66 (125)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-------------------------------------SC-
T ss_pred cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-------------------------------------ch-
Confidence 3468999999999999999999999999999996544211 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEE--ccCCceEEEEeCeEEEccC
Q 010573 122 PAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVD--TIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~--~~~g~~~~~~~d~lvlAtG 185 (507)
..+...+.+.+++.+++++.+. ...+ +.+.+.+. ..+|+.+++.+|.|++|+|
T Consensus 67 -----------~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 67 -----------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp -----------HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred -----------hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 1122334566778899998874 3333 34444444 3445456899999999998
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=2.4e-09 Score=99.54 Aligned_cols=42 Identities=33% Similarity=0.488 Sum_probs=39.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
|+|+||||||++|++||.+|++.|++|+|+|+++++||.|..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t 42 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYT 42 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCE
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEE
Confidence 589999999999999999999999999999999999998854
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.74 E-value=8.3e-08 Score=75.07 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=66.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+++-- . ++
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~---------~----------------------------~d-- 62 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR---------K----------------------------FD-- 62 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT---------T----------------------------SC--
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhccccc---------c----------------------------cc--
Confidence 46899999999999999999999999999999654310 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe---cCCEEEEEccCCceEEE-EeCeEEEc
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---SPSEVSVDTIEGGNTVV-KGKNIIIA 183 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---d~~~~~v~~~~g~~~~~-~~d~lvlA 183 (507)
..+...+.+.+++.||+++.+. +..+ +...+.+.+.+| ..+ .+|.||+|
T Consensus 63 ----------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G--~~~~~~D~Vi~A 116 (117)
T d1onfa2 63 ----------ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG--RIYEHFDHVIYC 116 (117)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTS--CEEEEESEEEEC
T ss_pred ----------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCC--CEEEeCCEEEEe
Confidence 1123344567778899999884 4333 345678888888 444 68999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=5e-08 Score=78.95 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=68.4
Q ss_pred CCcEEEECCChHHHHHHHHHHH----CCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ----LGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVE 118 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~----~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 118 (507)
..+++|||||+.|+.+|..|++ .|.+|++|++++.+-.. ..|
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~-----~~~----------------------------- 82 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK-----ILP----------------------------- 82 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT-----TSC-----------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc-----cCC-----------------------------
Confidence 3589999999999999988864 48999999996543110 000
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEccCCceEEEEeCeEEEccC
Q 010573 119 VDLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDTIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~~~g~~~~~~~d~lvlAtG 185 (507)
..+...+.+.+++.||+++.+. +..+ +...+.+.+++| +.+.+|.+|+|+|
T Consensus 83 --------------~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G--~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 83 --------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDG--RKVETDHIVAAVG 136 (137)
T ss_dssp --------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECCC
T ss_pred --------------HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCC--CEEECCEEEEeec
Confidence 1122334567788899999884 4333 566778888998 7899999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.72 E-value=5.4e-08 Score=77.05 Aligned_cols=91 Identities=25% Similarity=0.253 Sum_probs=64.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|||+.+.+-+.. ++
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~------------------------------------~d-- 71 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY------------------------------------LD-- 71 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT------------------------------------CC--
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc------------------------------------cc--
Confidence 4689999999999999999999999999999965431100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEecCC-EEEEEccCCceEEEEeCeEEEc
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFISPS-EVSVDTIEGGNTVVKGKNIIIA 183 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d~~-~~~v~~~~g~~~~~~~d~lvlA 183 (507)
..+...+.+.+++.|++++.++ ...+..+ .+...+.+| .++.+|.||+|
T Consensus 72 ----------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg--~~i~~D~vi~a 122 (123)
T d1nhpa2 72 ----------KEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDK--NAYDADLVVVA 122 (123)
T ss_dssp ----------HHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESS--CEEECSEEEEC
T ss_pred ----------hhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCC--CEEECCEEEEE
Confidence 1122334567788899999884 4445433 333334566 67999999998
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=1.7e-07 Score=73.89 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=62.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHH
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPA 123 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 123 (507)
.+++|||||+.|+..|..|++.|.+|+|++++..+.+ ++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~--------------------------------------~D--- 59 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--------------------------------------FD--- 59 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTT--------------------------------------SC---
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhcc--------------------------------------CC---
Confidence 5799999999999999999999999999987422111 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe---c---CCEEEEEccC---CceEEEEeCeEEEccC
Q 010573 124 MMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI---S---PSEVSVDTIE---GGNTVVKGKNIIIATG 185 (507)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---d---~~~~~v~~~~---g~~~~~~~d~lvlAtG 185 (507)
..+...+...+++.||+++.+. +..+ + .....+.... ++...+.+|.|++|+|
T Consensus 60 ---------~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 60 ---------QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp ---------HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred ---------HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 1223344567888899999883 3322 1 2234443322 2235678999999998
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.68 E-value=1.5e-07 Score=74.38 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=64.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+..|..|++.|.+|+++++.+.+.-. ++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-------------------------------------~d-- 62 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-------------------------------------KD-- 62 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-------------------------------------CS--
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-------------------------------------cc--
Confidence 358999999999999999999999999999996543100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CC-EE-EE-EccCCceEEEEeCeEEEccC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PS-EV-SV-DTIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~-~~-~v-~~~~g~~~~~~~d~lvlAtG 185 (507)
..+...+.+.+++.+++++.+. +..+. .+ .. .+ ....+..+++.+|.||+|+|
T Consensus 63 ----------~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 63 ----------NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred ----------cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 1122334567788899999884 43442 21 11 12 22333457899999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.6e-07 Score=74.49 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|++.|.+|+|+++.+++-. . ++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~---------~----------------------------~d-- 62 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR---------S----------------------------FD-- 62 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT---------T----------------------------SC--
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc---------c----------------------------hh--
Confidence 35899999999999999999999999999999654311 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe--cCCEEEEEc---cCCc----eEEEEeCeEEEccC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI--SPSEVSVDT---IEGG----NTVVKGKNIIIATG 185 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--d~~~~~v~~---~~g~----~~~~~~d~lvlAtG 185 (507)
..+...+.+.+++.||+++.+. +..+ +.+.+.+.. ..|. ...+.+|.|++|+|
T Consensus 63 ----------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 63 ----------SMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred ----------hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 1123334567788899999885 4444 344444432 2332 24578999999998
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.65 E-value=8.8e-09 Score=93.82 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=33.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
..+|+||||||+|+++|..|++.|++|+|+||++..
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 39 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP 39 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 458999999999999999999999999999997654
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.65 E-value=4e-08 Score=93.63 Aligned_cols=40 Identities=43% Similarity=0.540 Sum_probs=34.6
Q ss_pred CCcEEEECCChHHHHHHHHHHH----CCCcEEEEecCCCCCcee
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQ----LGLKTTCIEKRGALGGTC 82 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~----~g~~V~lie~~~~~GG~~ 82 (507)
++||||||+|+||++||++|++ .|++|+||||....||.+
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s 64 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA 64 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence 4899999999999999999975 599999999977665544
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.64 E-value=2.9e-07 Score=72.58 Aligned_cols=92 Identities=17% Similarity=0.297 Sum_probs=64.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..|+++|.+|+|+++.+++-.. ++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-------------------------------------~d-- 63 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-------------------------------------MD-- 63 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-------------------------------------SC--
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-------------------------------------hh--
Confidence 358999999999999999999999999999996654110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEe----cCCEEEEEccC---CceEEEEeCeEEEc
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFI----SPSEVSVDTIE---GGNTVVKGKNIIIA 183 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~----d~~~~~v~~~~---g~~~~~~~d~lvlA 183 (507)
..+...+...+++.||+++.+. +..+ +...+.+...+ ++..++.+|.|++|
T Consensus 64 ----------~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 64 ----------GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp ----------HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred ----------hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 1123334567788899999885 3333 23344444433 34578999999987
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.2e-08 Score=97.52 Aligned_cols=43 Identities=30% Similarity=0.569 Sum_probs=39.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
.+..+|+|||||+|||+||+.|+++|++|+|+|+++++||.+.
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~ 45 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVA 45 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEE
Confidence 4557899999999999999999999999999999999999764
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.59 E-value=3.2e-07 Score=71.80 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=64.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHC---CCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCcccc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL---GLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEV 119 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~---g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 119 (507)
..+++|||||+.|+.+|..+.+. +.+|+|||+.+.+- |. +
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL---------~~----------------------------~ 62 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL---------RG----------------------------F 62 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS---------TT----------------------------S
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh---------cc----------------------------c
Confidence 35899999999999999877665 46799999965431 00 0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec---CCEEEEEccCCceEEEEeCeEEEc
Q 010573 120 DLPAMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS---PSEVSVDTIEGGNTVVKGKNIIIA 183 (507)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d---~~~~~v~~~~g~~~~~~~d~lvlA 183 (507)
+ ..+...+.+.+++.||+++.+. +..+. ...+.+.+++| +++.+|.||+|
T Consensus 63 d------------~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G--~~i~~D~Vi~A 116 (117)
T d1aoga2 63 D------------HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESG--KKMDFDLVMMA 116 (117)
T ss_dssp C------------HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTS--CEEEESEEEEC
T ss_pred c------------hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCC--cEEEeCEEEEe
Confidence 0 1123344677888999999884 44442 34577888888 67999999998
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.58 E-value=1.6e-08 Score=86.71 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=65.3
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChHHH
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLPAM 124 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 124 (507)
+|+|||||++|+.+|..|++.|.++.|++..+.....+.. | .+. ... . .......+ .
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~----~---~l~-~~~-~---~~~~~~~~-----~------ 61 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDR----P---PLS-KDF-M---AHGDAEKI-----R------ 61 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCS----G---GGG-TTH-H---HHCCGGGS-----B------
T ss_pred CEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhh----H---HHh-hhh-h---hhhhhhhH-----H------
Confidence 5999999999999999999998776666553332211000 0 000 000 0 00000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 125 MAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
.......+++++.+ .+..++.+...+.+.+| +++.||.+|+|+|..|.
T Consensus 62 ---------------~~~~~~~~i~~~~~~~v~~i~~~~~~~~~~~g--~~~~~D~vi~a~G~~p~ 110 (183)
T d1d7ya1 62 ---------------LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPR 110 (183)
T ss_dssp ---------------CCGGGSTTCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEEC
T ss_pred ---------------HHHhhcCCeEEEEeccccccccccceeEecCC--cEeeeeeEEEEEEEEcc
Confidence 01234567888887 46667776667777888 78999999999998874
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.56 E-value=2.7e-07 Score=72.91 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..+++|||||+.|+.+|..+++.|.+|+|+++.+.+-.. .+
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-------------------------------------~d-- 65 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-------------------------------------MD-- 65 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-------------------------------------SC--
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-------------------------------------hh--
Confidence 458999999999999999999999999999996543110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEec--CCEE--EEEc-cCCceEEEEeCeEEEcc
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKGY-GKFIS--PSEV--SVDT-IEGGNTVVKGKNIIIAT 184 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~d--~~~~--~v~~-~~g~~~~~~~d~lvlAt 184 (507)
..+...+.+.+++.||+++.+. +..+. .+.+ .+.. ++|+.+.+.+|.|++|.
T Consensus 66 ----------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 66 ----------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp ----------HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred ----------hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 1123334567788899999885 44443 3333 3443 34556789999999883
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.56 E-value=1.6e-07 Score=86.69 Aligned_cols=155 Identities=17% Similarity=0.257 Sum_probs=102.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC---------------------CCC----------------HHH
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---------------------SMD----------------GEI 257 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~d----------------~~~ 257 (507)
-+|+|||+|++|+-+|..|.+.|.+|+++++.+.+.. ..+ +++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~ 87 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 87 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence 4699999999999999999999999999998765410 001 356
Q ss_pred HHHHHHHHHhcCc--EEEcCceEEEEEEcC--CeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCC
Q 010573 258 RKQFQRSLEKQKM--KFMLKTKVVGVDLSG--DGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKM 333 (507)
Q Consensus 258 ~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~ 333 (507)
.+.+++..++.++ .++++++|++++.++ +...|++. ++.++.+|.||.|+|.-..... ..-.++++...
T Consensus 88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~-----~~~~~~~~~~i~atG~ls~~~~--p~~~~~~i~g~ 160 (298)
T d1w4xa1 88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN-----HGDRIRARYLIMASGQLSDALT--GALFKIDIRGV 160 (298)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET-----TCCEEEEEEEEECCCSCCCCTT--HHHHTSEEECG
T ss_pred HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccc-----cccccccceEEEeecccccccC--CcccccccccC
Confidence 6777888888888 599999999998543 45667764 5678999999999996432221 11123443222
Q ss_pred CCeecCC--------C--CC-CCCCCeEEecC-CCC--CCCcHhHHHHHHHHHHHHH
Q 010573 334 GRIPVNE--------R--FA-TNIPGVYAIGD-VIP--GPMLAHKAEEDGVACVEFL 376 (507)
Q Consensus 334 G~i~Vd~--------~--~~-t~~~~IyA~GD-~a~--~~~~~~~A~~~g~~aa~~i 376 (507)
+++...+ + +. ...||.|.++- -+. .......+..|+..+++.|
T Consensus 161 ~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i 217 (298)
T d1w4xa1 161 GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHI 217 (298)
T ss_dssp GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHH
Confidence 2232211 1 11 36799999743 322 1223455666777777665
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.56 E-value=4.6e-08 Score=90.38 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=31.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
+||+||||||+|+++|..|++.|++|+|+||.+
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 599999999999999999999999999999975
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.55 E-value=2.3e-08 Score=93.37 Aligned_cols=41 Identities=24% Similarity=0.520 Sum_probs=38.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCL 83 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~ 83 (507)
+.+|+|||||++|++||..|++.|++|+|+|+++++||.|.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~ 42 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSY 42 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGC
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeee
Confidence 46899999999999999999999999999999999999874
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=8.5e-07 Score=78.02 Aligned_cols=125 Identities=19% Similarity=0.218 Sum_probs=82.3
Q ss_pred CCCCCCCccCCceEecchhhcccc------------CCCCeEEEEcCcHHHHHHHHHHHhc-------------------
Q 010573 188 VKSLPGITIDEKRIVSSTGALALN------------EVPKKLVVIGAGYIGLEMGSVWARL------------------- 236 (507)
Q Consensus 188 p~~~pg~~~~~~~~~~~~~~~~~~------------~~~~~vvVvG~G~~g~e~A~~l~~~------------------- 236 (507)
...+||-+ ..++++..+++.+. ..+++|+|||+|.+|+++|..+.+.
T Consensus 3 ~L~IPGed--l~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~ 80 (225)
T d1cjca1 3 ALDIPGEE--LPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 80 (225)
T ss_dssp CCCCTTTT--STTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT
T ss_pred CCCCCCCC--CCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc
Confidence 34677754 45677777666421 1279999999999999999999883
Q ss_pred -C-CeeEEEcccCcc-CCCCCHHHHHHH-----------------------------------HHHH-------------
Q 010573 237 -G-SEVTVVEFAADI-VPSMDGEIRKQF-----------------------------------QRSL------------- 265 (507)
Q Consensus 237 -g-~~Vtlv~~~~~~-~~~~d~~~~~~~-----------------------------------~~~l------------- 265 (507)
| .+|+++.|++.. ++.-.+++.+.. .+.+
T Consensus 81 ~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (225)
T d1cjca1 81 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRA 160 (225)
T ss_dssp CCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccc
Confidence 4 579999988765 333333432211 1111
Q ss_pred -HhcCcEEEcCceEEEEEEcCCe--EE-EEEeec------------CCCceEEEEcCEEEEeecC
Q 010573 266 -EKQKMKFMLKTKVVGVDLSGDG--VK-LTLEPA------------AGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 266 -~~~Gv~i~~~~~v~~i~~~~~~--v~-v~~~~~------------~~g~~~~i~~D~vi~a~G~ 314 (507)
...++.+++.....++..++++ +. +++... .+|+..+++||+||.|+|+
T Consensus 161 ~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 161 SASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp TCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ccccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 1357899999999999886542 32 333210 0244567999999999996
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.41 E-value=7.5e-08 Score=83.20 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=36.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCCCCCcee
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALGGTC 82 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~~GG~~ 82 (507)
..+|+||||||+||+||.+|+++|+ +|+||||.+.+||.+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~ 44 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS 44 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchh
Confidence 3689999999999999999999998 599999999988854
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.37 E-value=1.9e-07 Score=84.42 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=35.3
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCc
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGG 80 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG 80 (507)
|....||+|||||++|+++|++|+++|++|+||||+...+|
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~ 43 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV 43 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 44567999999999999999999999999999999653333
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=1e-07 Score=88.93 Aligned_cols=52 Identities=33% Similarity=0.357 Sum_probs=44.6
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHC--CCcEEEEecCCCCCceeccccccchhh
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQL--GLKTTCIEKRGALGGTCLNVGCIPSKA 92 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG~~~~~~~~p~~~ 92 (507)
...+||+||||||||++||.+|+++ |++|+|+|+++.+||.+...++.+.+.
T Consensus 48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 101 (311)
T d2gjca1 48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAM 101 (311)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCE
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEecCEeCCHH
Confidence 3468999999999999999999964 999999999999999987777655443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.33 E-value=1.7e-06 Score=78.04 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=75.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC------CCHHHHHHH--------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS------MDGEIRKQF-------------------------- 261 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~------~d~~~~~~~-------------------------- 261 (507)
.++|+|||+|+.|+-+|..|++.|.+|+++++.+..... +.+.....+
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 83 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence 578999999999999999999999999999987654321 122111111
Q ss_pred ------------------HH-HHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 262 ------------------QR-SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 262 ------------------~~-~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
.. .-...++.++++..++.++..++++++++. +++++.+|.+|.|.|....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~-----dG~~~~~d~~v~adG~~s~ 153 (265)
T d2voua1 84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFS-----DGTKAEANWVIGADGGASV 153 (265)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEET-----TSCEEEESEEEECCCTTCH
T ss_pred eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEEC-----CCCEEEEEEEecccccccc
Confidence 11 122357788899999999988889998886 5678999999999997654
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.30 E-value=7e-07 Score=68.48 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=63.2
Q ss_pred CCCCCcc-----CCceEecchhhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHH
Q 010573 190 SLPGITI-----DEKRIVSSTGALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRS 264 (507)
Q Consensus 190 ~~pg~~~-----~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~ 264 (507)
.+||++. .+..+++...-......+|+|+|||+|.+|+++|..|++.+++++++.+++....
T Consensus 3 ~ipGl~~f~~~~~G~i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~------------- 69 (107)
T d2gv8a2 3 NIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI------------- 69 (107)
T ss_dssp CCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC-------------
T ss_pred CCCChHHHhccCCccEEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcccc-------------
Confidence 4666542 1344444333333345689999999999999999999999999888877664321
Q ss_pred HHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEE-cCEEEEe
Q 010573 265 LEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILE-ADVVLVS 311 (507)
Q Consensus 265 l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~-~D~vi~a 311 (507)
...++.. ...+.+++.++.. +.+. +++.+. .|.||+|
T Consensus 70 -~~~~~~~--~~~i~~~~~~~~~--v~~~-----dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 70 -QNESLQQ--VPEITKFDPTTRE--IYLK-----GGKVLSNIDRVIYC 107 (107)
T ss_dssp -BCSSEEE--ECCEEEEETTTTE--EEET-----TTEEECCCSEEEEC
T ss_pred -cccccee--cCCeeEEecCCCE--EEEc-----CCCEEeCCCEEEEC
Confidence 1112222 2345666544443 4454 566765 7999987
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.25 E-value=1.8e-06 Score=78.71 Aligned_cols=36 Identities=31% Similarity=0.550 Sum_probs=33.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecCCCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRGALG 79 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~~~G 79 (507)
.||+||||||||+++|..|++.|. +|+|+||.+.++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~ 38 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 38 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 699999999999999999999995 899999987664
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.23 E-value=1.9e-05 Score=71.56 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=101.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCccCCC-----CCHH-------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADIVPS-----MDGE------------------------------- 256 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~~~~-----~d~~------------------------------- 256 (507)
|-+|+|||+|+.|+-+|..|++.|. +|+++++.+.+... +.+.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 80 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence 4579999999999999999999995 89999998765321 1111
Q ss_pred -------------------------HHHHHHH--HHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEE
Q 010573 257 -------------------------IRKQFQR--SLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVL 309 (507)
Q Consensus 257 -------------------------~~~~~~~--~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi 309 (507)
....... .....++.+..++.++.++..++++.+++.+. +++.+++.+|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g-~~~~~~~~ad~vi 159 (288)
T d3c96a1 81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDG-HGKPQALGADVLV 159 (288)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEET-TSCEEEEEESEEE
T ss_pred CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcC-CCCeEEEeeceee
Confidence 0111111 12235888889999999998899999988753 3345789999999
Q ss_pred EeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCC-----CCcHhHHHHHHHHHHHHHc
Q 010573 310 VSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPG-----PMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 310 ~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~-----~~~~~~A~~~g~~aa~~i~ 377 (507)
.|.|........ . ... ...............+..+||++.. .+....|+.++...+..+.
T Consensus 160 ~ADG~~S~vr~~----~---~~~-~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~ 224 (288)
T d3c96a1 160 GADGIHSAVRAH----L---HPD-QRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALA 224 (288)
T ss_dssp ECCCTTCHHHHH----H---CTT-CCCCCCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHH
T ss_pred ccCCccceeeee----e---ccc-cccccccccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHh
Confidence 999976543210 0 000 0000111112345678899999832 2345678888887777764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.19 E-value=8.5e-07 Score=75.50 Aligned_cols=111 Identities=15% Similarity=0.163 Sum_probs=63.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceeccccccchhhhhhhhHHHHHHHhhhhhCCcccCccccChH
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAMHSFASHGVKFSSVEVDLP 122 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 122 (507)
..||||||||++|+.+|..|++.|.++++++..+........ ..+.. .+.............
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~------~~~~~----------~~~~~~~~~~~~~~~-- 64 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL------PPLSK----------AYLAGKATAESLYLR-- 64 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS------GGGGT----------TTTTTCSCSGGGBSS--
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhh------hHHHH----------HHHHhhhhhhhhhhh--
Confidence 358999999999999999999999988887765433211110 00000 000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccCCCCC
Q 010573 123 AMMAQKDKAVSNLTRGIEGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATGSDVK 189 (507)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~ 189 (507)
...........+..+ ....++.....+...++ .++.+|.+++++|..|.
T Consensus 65 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~i~~d~~i~~~G~~~~ 114 (185)
T d1q1ra1 65 ----------------TPDAYAAQNIQLLGGTQVTAINRDRQQVILSDG--RALDYDRLVLATGGRPL 114 (185)
T ss_dssp ----------------CHHHHHHTTEEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEEE
T ss_pred ----------------hhhhhcccceeeeccceeeeecccccEEEeece--eEEEeeeeeeeeecccC
Confidence 012334455555555 34445555555665565 78999999999998763
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.12 E-value=8e-07 Score=84.87 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=66.1
Q ss_pred HhcCcEEEcCceEEEEEEcCC--eE-EEEEeecCCCceEEEEcCEEEEeecCCCCCCCC------------C------Cc
Q 010573 266 EKQKMKFMLKTKVVGVDLSGD--GV-KLTLEPAAGGEKTILEADVVLVSAGRTPFTAGL------------G------LD 324 (507)
Q Consensus 266 ~~~Gv~i~~~~~v~~i~~~~~--~v-~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l------------~------~~ 324 (507)
...|+++++++.|++|..++. .+ .|++.+..++....+.++.||+|.|..-....| . ..
T Consensus 229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~ 308 (379)
T d2f5va1 229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP 308 (379)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSST
T ss_pred cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCccccc
Confidence 345799999999999987543 33 356666666666789999999999842111100 0 00
Q ss_pred ccCc-ee--cCC-CCeecCCCCCC-CCCCeEEecCCCC----CCCcHhHHHHHHHHHHHHHcC
Q 010573 325 KIGV-ET--DKM-GRIPVNERFAT-NIPGVYAIGDVIP----GPMLAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 325 ~~gl-~~--~~~-G~i~Vd~~~~t-~~~~IyA~GD~a~----~~~~~~~A~~~g~~aa~~i~~ 378 (507)
..|. .+ ++. -.=+||.++++ .++|+|++|...- .-.-......-|..+|++|..
T Consensus 309 ~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~ 371 (379)
T d2f5va1 309 SLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQ 371 (379)
T ss_dssp TTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccCCCCCCccCCCCCcccccCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHH
Confidence 0000 00 110 11368999997 6899999876551 111123344445567777753
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.09 E-value=5.7e-06 Score=72.07 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=42.7
Q ss_pred CCCCCCccCCceEecchhhcccc------------CCCCeEEEEcCcHHHHHHHHHHH--------------------hc
Q 010573 189 KSLPGITIDEKRIVSSTGALALN------------EVPKKLVVIGAGYIGLEMGSVWA--------------------RL 236 (507)
Q Consensus 189 ~~~pg~~~~~~~~~~~~~~~~~~------------~~~~~vvVvG~G~~g~e~A~~l~--------------------~~ 236 (507)
..+||-+ ..++++..+++.+. ..+++|+|||+|.+|+++|..+. +.
T Consensus 4 L~IPGed--l~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~ 81 (216)
T d1lqta1 4 LNIPGED--LPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPR 81 (216)
T ss_dssp CCCTTTT--STTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTC
T ss_pred CCCCCCC--CCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhc
Confidence 4567754 45577776665321 23799999999999999998876 45
Q ss_pred CC-eeEEEcccCcc
Q 010573 237 GS-EVTVVEFAADI 249 (507)
Q Consensus 237 g~-~Vtlv~~~~~~ 249 (507)
|. +|+++.|+...
T Consensus 82 ~~~~V~iv~RRg~~ 95 (216)
T d1lqta1 82 GIQEVVIVGRRGPL 95 (216)
T ss_dssp CCCEEEEECSSCGG
T ss_pred CCceEEEEEECChH
Confidence 54 69999887654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.07 E-value=3.2e-05 Score=63.39 Aligned_cols=35 Identities=20% Similarity=0.028 Sum_probs=29.8
Q ss_pred CcEEEE--CCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 44 NDVVVI--GGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 44 ~dvvII--G~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
..++|+ |||+.|+.+|..|+++|.+|+||++.+.+
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~ 76 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA 76 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 345555 99999999999999999999999996543
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.98 E-value=1.7e-05 Score=71.28 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=71.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC--------------------------------------CCCH-H
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--------------------------------------SMDG-E 256 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--------------------------------------~~d~-~ 256 (507)
.++|||+|+.|+++|..++++|.+|+++++.+.+.. ..+. .
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE 123 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence 599999999999999999999999999998765410 0110 1
Q ss_pred HHHH------------HHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCc
Q 010573 257 IRKQ------------FQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLD 324 (507)
Q Consensus 257 ~~~~------------~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~ 324 (507)
.... ..+.+...++....+....-+ +... +.. +++++++|.|++|+|.+|++..+..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--d~~~--v~~------~g~~i~ad~viiAtG~~P~~~~i~~~ 193 (261)
T d1mo9a1 124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVI--DNHT--VEA------AGKVFKAKNLILAVGAGPGTLDVPEQ 193 (261)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEE--ETTE--EEE------TTEEEEBSCEEECCCEECCCCCSTCE
T ss_pred HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEe--eecc--ccc------ccceEeeeeeeeccCCCCCcCccccc
Confidence 1100 112222333433333222211 1111 222 46789999999999999999887655
Q ss_pred ccCceecCCCCeecCCCC
Q 010573 325 KIGVETDKMGRIPVNERF 342 (507)
Q Consensus 325 ~~gl~~~~~G~i~Vd~~~ 342 (507)
...+++++.-++.+|+..
T Consensus 194 ~~~~~l~~~~Gl~~~~~G 211 (261)
T d1mo9a1 194 PRSAELAKILGLDLGPKG 211 (261)
T ss_dssp ECCHHHHHHHTCCBCTTS
T ss_pred ccccccccceeeeeccCC
Confidence 545555443346666543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.94 E-value=2.6e-06 Score=80.56 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=32.3
Q ss_pred CCcEEEECCChHHHHHHHHHH-----HCCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAA-----QLGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~-----~~g~~V~lie~~~~~ 78 (507)
.|||+||||||+|+++|..|+ +.|++|+||||.+.+
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 489999999999999999996 569999999997654
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.90 E-value=5.8e-05 Score=65.28 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=65.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC-ccC-----C-----C-------CC------HHHHHHHHHHHHh-cCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA-DIV-----P-----S-------MD------GEIRKQFQRSLEK-QKM 270 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~-~~~-----~-----~-------~d------~~~~~~~~~~l~~-~Gv 270 (507)
.|+|||+|+.|+|.|...+|.|.++.+++.+. .+. | . .+ .......++.+.+ .++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL 83 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL 83 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence 48999999999999999999999999997542 110 0 0 00 0122334444443 488
Q ss_pred EEEcCceEEEEEEcCCeEE-EEEeecCCCceEEEEcCEEEEeecCCC
Q 010573 271 KFMLKTKVVGVDLSGDGVK-LTLEPAAGGEKTILEADVVLVSAGRTP 316 (507)
Q Consensus 271 ~i~~~~~v~~i~~~~~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p 316 (507)
.++.. .|..+..+++.+. |.+. ++.++.+..||++||.--
T Consensus 84 ~i~q~-~V~dli~e~~~v~gV~t~-----~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 84 HLFQA-TATGLLLEGNRVVGVRTW-----EGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp EEEEC-CEEEEEEETTEEEEEEET-----TSCCEECSEEEECCTTCS
T ss_pred HHHhc-cceeeEecccceeeEEec-----cccEEEEeEEEEccCcce
Confidence 88754 5666666666654 6654 567899999999999543
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.87 E-value=5.4e-05 Score=66.50 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=45.0
Q ss_pred CCCCCCccCCceEecchhhc-c-ccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 189 KSLPGITIDEKRIVSSTGAL-A-LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 189 ~~~pg~~~~~~~~~~~~~~~-~-~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
+.+||.+.....++++.+.. . ....+|+|+|||+|.+|+++|..+++.+.+++++.+.+.
T Consensus 5 P~~pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 5 PNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp CCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCCChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence 35778774444555555542 2 234689999999999999999999999999888876654
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.86 E-value=3.4e-05 Score=68.69 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=30.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 489999999999999999999999999999764
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.86 E-value=3.1e-05 Score=70.71 Aligned_cols=101 Identities=22% Similarity=0.336 Sum_probs=72.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC--C-----CCC----------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV--P-----SMD---------------------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~-----~~d---------------------------------- 254 (507)
+|+|||+|++|+-+|..|++.|.+|+++++.+... . .+.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~~ 83 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQR 83 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecccc
Confidence 69999999999999999999999999999876321 0 011
Q ss_pred -------------------HHHHHHHHHHHHhcCcEEEcCceEEE-EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecC
Q 010573 255 -------------------GEIRKQFQRSLEKQKMKFMLKTKVVG-VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 255 -------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~-i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
..+.+.+.+.+++.+..+........ +..+++++.+++.. +++..++.+|+||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~g~~~~i~a~~vVgADG~ 161 (292)
T d1k0ia1 84 RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFER--DGERLRLDCDYIAGCDGF 161 (292)
T ss_dssp EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEE--TTEEEEEECSEEEECCCT
T ss_pred cccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEec--CCcEEEEEeCEEEECCCC
Confidence 23455556666667777777665554 44455667776653 344457899999999998
Q ss_pred CCCC
Q 010573 315 TPFT 318 (507)
Q Consensus 315 ~p~~ 318 (507)
+...
T Consensus 162 ~S~v 165 (292)
T d1k0ia1 162 HGIS 165 (292)
T ss_dssp TCST
T ss_pred CCcc
Confidence 7654
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=5.9e-05 Score=62.16 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=35.0
Q ss_pred HHHHHhCCcEEEEe-EEEEecCCEEEEEccCCceEEEEeCeEEEccC
Q 010573 140 EGLFKKNKVTYVKG-YGKFISPSEVSVDTIEGGNTVVKGKNIIIATG 185 (507)
Q Consensus 140 ~~~~~~~~v~~~~~-~~~~~d~~~~~v~~~~g~~~~~~~d~lvlAtG 185 (507)
...++..+++++.+ ....++.+.+.+.. +|+.+.+.+|.||+|+|
T Consensus 115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~-~g~e~~i~aD~Vv~A~G 160 (162)
T d1ps9a2 115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVI-NGETQVLAVDNVVICAG 160 (162)
T ss_dssp HHHHHHTTCEEECSCEEEEEETTEEEEEE-TTEEEEECCSEEEECCC
T ss_pred HHHHhhCCeEEEeeeEEEEEcCCCCEEec-CCeEEEEECCEEEECCC
Confidence 35567789998877 45677888877754 55567899999999999
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=2.4e-05 Score=68.83 Aligned_cols=90 Identities=17% Similarity=0.194 Sum_probs=64.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCccC-------C---CCCHHHHHHHHHHHHhcCcEEEcCceEEEEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADIV-------P---SMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDL 283 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~~-------~---~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 283 (507)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+. + .....+.......+++.|++++.++.|..
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--- 79 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR--- 79 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence 799999999999999999775 67999999998753 1 12234556667778889999998876521
Q ss_pred cCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 284 SGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 284 ~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
+ + .+. .-.-.+|.+++|+|..+...
T Consensus 80 --~-~--~~~------~l~~~~d~v~~a~Ga~~~~~ 104 (230)
T d1cjca2 80 --D-V--TVQ------ELQDAYHAVVLSYGAEDKSR 104 (230)
T ss_dssp --T-B--CHH------HHHHHSSEEEECCCCCEECC
T ss_pred --c-c--cHH------HHHhhhceEEEEeecccccc
Confidence 1 0 100 00124799999999876543
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.71 E-value=1e-05 Score=76.94 Aligned_cols=36 Identities=39% Similarity=0.577 Sum_probs=33.1
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
....+||||||+|++|+.+|.+|++.|++|+|+|+.
T Consensus 4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345689999999999999999999999999999984
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.65 E-value=0.00011 Score=63.92 Aligned_cols=96 Identities=20% Similarity=0.327 Sum_probs=64.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCC-------------------------------------CC----
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPS-------------------------------------MD---- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-------------------------------------~d---- 254 (507)
.|+|||+|+.|+++|..+++.|.+|+++++.+.+... ..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM 84 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence 4899999999999999999999999999987654210 00
Q ss_pred --------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 --------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 --------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+...+...++..+++++...... . ......... .......+.+|.||+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~--~~~~~~~~~---~~~~~~~~~a~~VIiATGs~~~ 149 (221)
T d1dxla1 85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-V--SPSEISVDT---IEGENTVVKGKHIIIATGSDVK 149 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-E--ETTEEEECC---SSSCCEEEECSEEEECCCEEEC
T ss_pred HHHHHHHHHHHhhHHHHhhhcCCeEEEEecccc-c--ccccccccc---ccccccccccceEEEeECCCcc
Confidence 1123334556667788877543221 1 222222221 1235578999999999999875
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.61 E-value=1.8e-05 Score=74.88 Aligned_cols=34 Identities=35% Similarity=0.702 Sum_probs=32.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
.||+||||+|+||..+|.+|++.|++|+|+|+..
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 5999999999999999999999999999999953
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.59 E-value=2.4e-05 Score=74.12 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=31.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
.||||||+|++|..+|.+|++.|++|+|+|+..
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 489999999999999999999999999999943
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.51 E-value=1.3e-05 Score=70.70 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCC-----------HHHHHHHHHHHHhcCcEEEcCceEEE
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMD-----------GEIRKQFQRSLEKQKMKFMLKTKVVG 280 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d-----------~~~~~~~~~~l~~~Gv~i~~~~~v~~ 280 (507)
..+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+. ..........+.+.+..... . .
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~ 122 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE-S---Q 122 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT-C---E
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee-e---e
Confidence 4589999999999999999999999999999999887642111 12222233333322111110 0 0
Q ss_pred EEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCCCCCcccCceecCCCCeecCCCCCCCCCCeEEecCCCCCCC
Q 010573 281 VDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPM 360 (507)
Q Consensus 281 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~~ 360 (507)
+...... +.. .+..++.+|.||+|+|..+......... .. .... .....+++..++.. .+-
T Consensus 123 ~~~~~~~--~~~-----~~~~~~~~d~vviAtG~~~~~~~~~~~~------~~-~~~~----~~~~~~~~~~~~~~-~~v 183 (233)
T d1djqa3 123 LALGQKP--MTA-----DDVLQYGADKVIIATGASECTLWNELKA------RE-SEWA----ENDIKGIYLIGDAE-APR 183 (233)
T ss_dssp EECSCCC--CCH-----HHHHTSCCSEEEECCCEECCHHHHHHHH------TT-HHHH----HTTCCEEEECGGGT-SCC
T ss_pred eeccccc--ccc-----hhhhhhccceeeeccCCCcccccccccc------cc-cccc----hhhhhhhhhccccC-Cce
Confidence 1001100 110 0223567999999999887654211110 00 0111 12346667666642 333
Q ss_pred cHhHHHHHHHHHHHHHcC
Q 010573 361 LAHKAEEDGVACVEFLAG 378 (507)
Q Consensus 361 ~~~~A~~~g~~aa~~i~~ 378 (507)
....+-..|..+|..+..
T Consensus 184 vViGgG~~g~e~A~~l~~ 201 (233)
T d1djqa3 184 LIADATFTGHRVAREIEE 201 (233)
T ss_dssp CHHHHHHHHHHHHHTTTS
T ss_pred eEecCchHHHHHHHHHHh
Confidence 555666777777777653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.48 E-value=0.0006 Score=59.56 Aligned_cols=99 Identities=21% Similarity=0.337 Sum_probs=67.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC--------------------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-------------------------------------------- 251 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-------------------------------------------- 251 (507)
.++|||+|+.|+.+|..+++.|.+|.++++.+....
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~ 84 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT 84 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence 489999999999999999999999999996543110
Q ss_pred -CCC------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 252 -SMD------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 252 -~~d------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
..+ ..+.+.+...+++.+|.++.+..... ..+...+.. ..+....+.++.+++++|.+|..
T Consensus 85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~---~~~~~~v~~---~~~~~~~i~a~~ivi~~G~~p~~ 158 (235)
T d1h6va1 85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFI---GPHKIMATN---NKGKEKVYSAERFLIATGERPRY 158 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEE---ETTEEEEEC---TTSCEEEEEEEEEEECCCEEECC
T ss_pred eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeec---cccceeccc---ccccccccccccceeecCCCcee
Confidence 011 01223345567778999886644321 234444432 23455679999999999999976
Q ss_pred CC
Q 010573 319 AG 320 (507)
Q Consensus 319 ~~ 320 (507)
..
T Consensus 159 ~~ 160 (235)
T d1h6va1 159 LG 160 (235)
T ss_dssp CS
T ss_pred EE
Confidence 54
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.47 E-value=0.00033 Score=64.29 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhc--CCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARL--GSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~~~ 249 (507)
...|+|||+|+.|+.+|..|++. |.+|+++++.+.+
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 46799999999999999999864 8999999998765
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00039 Score=60.00 Aligned_cols=93 Identities=18% Similarity=0.302 Sum_probs=63.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC----------------------------C---------CCC----
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV----------------------------P---------SMD---- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------------------------~---------~~d---- 254 (507)
.++|||+|+.|+++|..++++|.+|+++++.+ +. . .++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL 82 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence 48999999999999999999999999998753 10 0 000
Q ss_pred --------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 255 --------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 255 --------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
..+...++..+++.||++......... ... ... ++..+.++.+++|+|..|....
T Consensus 83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~~--~~~------~~~~~~~~~~iiatG~~p~ip~ 145 (217)
T d1gesa1 83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AKT--LEV------NGETITADHILIATGGRPSHPR 145 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TTE--EEE------TTEEEEEEEEEECCCEEECCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---eee--ecC------CCceeeeeeeeeecCccccCCC
Confidence 012223445567778888765443322 111 111 4578999999999999987653
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.43 E-value=0.0034 Score=58.28 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCCCCCCCCCeEEecCCCCC--CCcHhHHHHHHHHHHHHHc
Q 010573 339 NERFATNIPGVYAIGDVIPG--PMLAHKAEEDGVACVEFLA 377 (507)
Q Consensus 339 d~~~~t~~~~IyA~GD~a~~--~~~~~~A~~~g~~aa~~i~ 377 (507)
+....|+++++|++||+++. ..+...+..+|+++++++.
T Consensus 278 ~~~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~ 318 (356)
T d1jnra2 278 KYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAV 318 (356)
T ss_dssp CCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccchhcCCccccCccccccccchhHHHHH
Confidence 34445788999999998853 3466778888888888775
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.41 E-value=0.00053 Score=59.27 Aligned_cols=33 Identities=27% Similarity=0.303 Sum_probs=30.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
...++|||+|+.|+++|..++++|.+|+++++.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 356999999999999999999999999999864
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.35 E-value=5.9e-05 Score=71.95 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=32.1
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~ 76 (507)
+.||+||||||+||...|.+|++.+ .+|+|+|+..
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 4599999999999999999999987 7999999964
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.32 E-value=3.7e-05 Score=72.23 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=31.4
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+...||+||||+|+||..+|.+|++. ++|+|+|+.
T Consensus 23 ~~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG 57 (351)
T d1ju2a1 23 LEGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERG 57 (351)
T ss_dssp SEEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSS
T ss_pred ccCCccEEEECccHHHHHHHHHhcCC-CCEEEEecC
Confidence 34569999999999999999999986 999999994
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.31 E-value=6.4e-05 Score=71.57 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCC-CcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~ 76 (507)
+.||+||||||+||...|.+|++.+ ++|+|+|+..
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~ 51 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 51 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 4599999999999999999999875 8999999954
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.29 E-value=0.001 Score=53.62 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCc-EEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~-V~lie~~~ 76 (507)
.+|+|||||..|+-+|..|.|.|.+ |+++.+.+
T Consensus 46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 4799999999999999999999865 88888743
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=0.00055 Score=59.84 Aligned_cols=104 Identities=23% Similarity=0.289 Sum_probs=64.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC---CeeEEEcccCc------------------------c--CC-----------CCC-
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG---SEVTVVEFAAD------------------------I--VP-----------SMD- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g---~~Vtlv~~~~~------------------------~--~~-----------~~d- 254 (507)
+|+|||+|+.|+.+|..++++| .+|+++++..- + .+ .++
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~ 82 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL 82 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence 7999999999999998887766 56889886430 0 00 011
Q ss_pred H-----------HHHHHHHHHHHhcCcEEEcCceEEEEEEc-CCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCCC
Q 010573 255 G-----------EIRKQFQRSLEKQKMKFMLKTKVVGVDLS-GDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTAG 320 (507)
Q Consensus 255 ~-----------~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 320 (507)
+ .....+...++..||+++.+......... .....+.+. ..+++..++++|.+++++|.+|....
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~-~~dg~~~~i~ad~viiAtG~~p~~~~ 159 (233)
T d1xdia1 83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKAT-AADGSTSEHEADVVLVATGASPRILP 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEE-CTTSCEEEEEESEEEECCCEEECCCG
T ss_pred eeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEE-ecCCceeeeecceeeeecCccccccc
Confidence 0 11123456677889999876432111000 111223332 23456678999999999999998653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.27 E-value=1.8e-05 Score=70.11 Aligned_cols=31 Identities=26% Similarity=0.123 Sum_probs=26.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
++|+|||||++|+++|++|+++|++|+++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~ 31 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD 31 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence 3799999999999999999999987655554
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=97.26 E-value=0.00094 Score=57.75 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=64.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC--CCC---------------------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP--SMD--------------------------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~d--------------------------------------- 254 (507)
.++|||+|+.|+.+|..+++.|.+|.++++...... .+.
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 84 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA 84 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence 489999999999999999999999999986542110 000
Q ss_pred --------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 255 --------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 255 --------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
..+...+...++..||+++.+..... ......... .......+.++.+++++|.+|...
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~---~~~~~~~~~---~~~~~~~~~~~~~i~atG~~~~~~ 157 (229)
T d3lada1 85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL---AGKKVEVTA---ADGSSQVLDTENVILASGSKPVEI 157 (229)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC---STTCEEEEC---TTSCEEEECCSCEEECCCEEECCC
T ss_pred eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc---ccceeeccc---cCccceeeecccccccCCcccccc
Confidence 11223345566777888876543321 122222221 123456788999999999998664
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.13 E-value=0.002 Score=55.37 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=65.2
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc-----------------------------------CCCCC-----
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI-----------------------------------VPSMD----- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~-----------------------------------~~~~d----- 254 (507)
..++|||+|+.|+++|..+++.|.+|+++++...- ...++
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 35899999999999999999999999999865310 00111
Q ss_pred -------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 255 -------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 255 -------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
..+...+...++..+|+++.+.. .+. ......+... .....+.++.+++++|..|..
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~-~~~~~~v~~~----~~~~~~~~~~iiIa~g~~p~~ 147 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFV-DANTVRVVNG----DSAQTYTFKNAIIATGSRPIE 147 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEE-ETTEEEEEET----TEEEEEECSEEEECCCEEECC
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEc-cCcccceecc----ccceEEecccEEEEcCCCccc
Confidence 11223344556778999886642 122 2334444432 245789999999999998854
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.09 E-value=0.0002 Score=62.84 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcC-------CeeEEEcccCccC--------C--CCCHHHHHHHHHHHHhcCcEEEcCc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLG-------SEVTVVEFAADIV--------P--SMDGEIRKQFQRSLEKQKMKFMLKT 276 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g-------~~Vtlv~~~~~~~--------~--~~d~~~~~~~~~~l~~~Gv~i~~~~ 276 (507)
|.+|+|||+|++|+.+|..|++.| .+|+++++.+.+. | .....+.......+...|+++++++
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 579999999999999999999987 4799999988653 2 2234556666777888999999887
Q ss_pred eEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCC
Q 010573 277 KVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFT 318 (507)
Q Consensus 277 ~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 318 (507)
.+... ..+ +.....+|.+++|+|..+..
T Consensus 82 ~v~~~--------~~~------~~~~~~~~~v~~atGa~~~~ 109 (239)
T d1lqta2 82 VVGEH--------VQP------GELSERYDAVIYAVGAQSRG 109 (239)
T ss_dssp CBTTT--------BCH------HHHHHHSSEEEECCCCCEEC
T ss_pred Eeccc--------cch------hhhhccccceeeecCCCccc
Confidence 65211 000 11123589999999987644
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0019 Score=55.58 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=63.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc------------------------------c-C----CCCCH-----
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD------------------------------I-V----PSMDG----- 255 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~------------------------------~-~----~~~d~----- 255 (507)
.++|||+|+.|+++|..+++.|.+|.++++... . . ..++.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE 84 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence 389999999999999999999999999986431 0 0 01111
Q ss_pred -------HHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEeecCCCceEEEEcCEEEEeecCCCCCC
Q 010573 256 -------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEPAAGGEKTILEADVVLVSAGRTPFTA 319 (507)
Q Consensus 256 -------~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 319 (507)
.+.....+.+++.||+++.+.-... ......+.. ....+.++.+++++|..|..+
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~---~~~~~~~~~------~~~~~~~~~~~iatG~~p~vp 146 (221)
T d3grsa1 85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT---SDPKPTIEV------SGKKYTAPHILIATGGMPSTP 146 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCEEC---SCSSCEEEE------TTEEEECSCEEECCCEEECCC
T ss_pred hhheEEeeeccchhhhhccCceEEEEEeeeec---cccceeeee------eccccccceeEEecCccccCC
Confidence 1222344567788999876542211 122222221 346889999999999999765
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=97.01 E-value=0.0057 Score=54.58 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHh-cCCeeEEEcccCccCC-------CCC-------------------------------
Q 010573 214 PKKLVVIGAGYIGLEMGSVWAR-LGSEVTVVEFAADIVP-------SMD------------------------------- 254 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~~~-------~~d------------------------------- 254 (507)
...|+|||+|+.|+.+|..|++ .|.+|+++++.+.+.. .++
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 112 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence 4569999999999999999986 5999999998875421 000
Q ss_pred -HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEE-EEEe---------ecCCCceEEEEcCEEEEeecCCCC
Q 010573 255 -GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVK-LTLE---------PAAGGEKTILEADVVLVSAGRTPF 317 (507)
Q Consensus 255 -~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~-v~~~---------~~~~g~~~~i~~D~vi~a~G~~p~ 317 (507)
..+...+.+..+..++.+..++.+..+...++.+. +... .....+...+.++.++.++|....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~ 186 (278)
T d1rp0a1 113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP 186 (278)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence 12233344555667888888888888776666554 2211 011224568999999999997643
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0037 Score=48.36 Aligned_cols=35 Identities=37% Similarity=0.403 Sum_probs=31.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
..+|+|||+|.+++-.|..|++...+|+||-+.+.
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~ 64 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 64 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence 57899999999999999999999999999988544
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.0039 Score=48.23 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=32.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
..+|+|||+|-+++-.|..|.+...+|+|+-|.+.+
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ 62 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 62 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence 468999999999999999999999999999886543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.81 E-value=0.00048 Score=63.73 Aligned_cols=44 Identities=36% Similarity=0.527 Sum_probs=37.9
Q ss_pred hhccccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 206 GALALNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 206 ~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
+.......||+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 22 ~~~~~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~ 65 (370)
T d2iida1 22 NGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65 (370)
T ss_dssp HCSCCCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred cCCCCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 33344456899999999999999999999999999999988765
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.75 E-value=0.00058 Score=62.34 Aligned_cols=36 Identities=36% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
+|+|+|||+|+.|+-+|..|++.|.+|+++++++++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~ 36 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 36 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 589999999999999999999999999999988765
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00081 Score=49.19 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
..+|+|+|.|-+|+++|..|.+.|.+|+++|.+.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 4579999999999999999999999999999854
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.44 E-value=0.015 Score=44.98 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=33.4
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGAL 78 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~ 78 (507)
...+|+|||+|-+++-.|..|++.-.+|+||-|.+.+
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ 69 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF 69 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence 4679999999999999999999999999999886554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.38 E-value=0.0014 Score=54.30 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..|+|||+|..|...|.+|.+.|++|+|+|++
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~ 34 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT 34 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 57999999999999999999999999999994
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.28 E-value=0.002 Score=51.98 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=31.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.-+|+|||+|.+|+.|+..+++.|.+|+++|.+
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~ 64 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 64 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence 458999999999999999999999999999984
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.28 E-value=0.0018 Score=59.17 Aligned_cols=37 Identities=30% Similarity=0.587 Sum_probs=34.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 250 (507)
.|+|+|||+|.+|+-+|..|++.|.+|+++++++++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG 38 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 38 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 5899999999999999999999999999999998874
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.28 E-value=0.002 Score=52.76 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
-+|+|||+|.+|+.||..+.+.|..|+++|.+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 589999999999999999999999999999853
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0024 Score=59.14 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=34.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
...+|+|||+|..|+-+|..|++.|.+|++++.++++
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~ 40 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 40 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 3567999999999999999999999999999998876
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.16 E-value=0.0023 Score=53.29 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.++.|||+|..|.+.|..|++.|++|.+++++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 47999999999999999999999999999983
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.09 E-value=0.0021 Score=58.09 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=32.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
+|+|||+|+.|+.+|..|++.|.+|+++++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 35 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 5999999999999999999999999999998765
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.04 E-value=0.0032 Score=49.23 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++|+|+|+|.-|...|..|.+.|++|++||++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d 32 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 32 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence 47999999999999999999999999999994
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.98 E-value=0.0027 Score=56.27 Aligned_cols=34 Identities=24% Similarity=0.527 Sum_probs=31.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~~~ 249 (507)
+|+|||+|+.|+-+|..|++.|. +|+++++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~ 36 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 59999999999999999999995 79999998876
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.97 E-value=0.003 Score=55.58 Aligned_cols=35 Identities=34% Similarity=0.541 Sum_probs=32.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
..++|+|||+|..|+-+|..|++.|.+|+++++..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 35789999999999999999999999999999754
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0036 Score=51.05 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=31.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGA 77 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~ 77 (507)
++|+|||+|.-|...|..|++.|++|+++++.+.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 4799999999999999999999999999999543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0041 Score=56.24 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=32.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 250 (507)
.++|||+|++|+-+|..|++.|.+|+++++++++.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG 37 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG 37 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence 58999999999999999999999999999998874
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.68 E-value=0.017 Score=43.48 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
-.+++++|||+|.+|..-+..|.+.|.+|+++...
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~ 44 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 34799999999999999999999999999998643
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.63 E-value=0.016 Score=43.09 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=29.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
...+|+|||+|.+|+-.|..|++...+++++.+.
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r 64 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL 64 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence 4579999999999999999999998888777663
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=95.61 E-value=0.12 Score=43.77 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
..++|+|||+|..|+-+|..+++.+.+++++-+..
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 46799999999999999999999999888876643
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0057 Score=48.94 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
-.+++++|||||.+|.+-+..|.+.|.+|+++...
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45899999999999999999999999999999643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.51 E-value=0.006 Score=47.70 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=29.7
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+++|||.|..|...|..|.+.|++|++||++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d 32 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 6899999999999999999999999999994
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.32 E-value=0.0049 Score=49.32 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
+..+++|||||..|+.-|..|.+.|.+|+||.+
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 357899999999999999999999999999976
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.30 E-value=0.0099 Score=44.84 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+..+|+|||+|..|..-|..|.+.|.+|++++..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~ 44 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3568999999999999999999999999999873
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.012 Score=44.85 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=33.6
Q ss_pred cCCCCCCCcEEEECCCh-----------HHHHHHHHHHHCCCcEEEEecCC
Q 010573 37 FASASDENDVVVIGGGP-----------GGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 37 ~~~~~~~~dvvIIG~G~-----------aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
|++.....+|+|||+|| ++..|+..|++.|+++++|..++
T Consensus 1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP 51 (127)
T d1a9xa3 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP 51 (127)
T ss_dssp CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence 34455667999999997 78899999999999999998864
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=95.05 E-value=0.0092 Score=52.07 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4899999999999999999999999999987654
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.05 E-value=0.084 Score=44.62 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=28.1
Q ss_pred CCcEEEECCChHHHHHHHHHH--------------------HCCC-cEEEEecCC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAA--------------------QLGL-KTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~--------------------~~g~-~V~lie~~~ 76 (507)
..+|+|||+|-.++=+|..|. +.|. +|.++.|+.
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg 93 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 93 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence 468999999999999998876 4554 699998853
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0089 Score=55.06 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=31.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~ 34 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 34 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 3899999999999999999999999999987765
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=95.03 E-value=0.0094 Score=52.24 Aligned_cols=35 Identities=37% Similarity=0.533 Sum_probs=32.1
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..|+|||+|+.|+-+|..+++.|.+|+++++.+.+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 35999999999999999999999999999988754
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.98 E-value=0.0096 Score=47.19 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCC--CcEEEEecC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~ 75 (507)
|.++++|.|||+|..|.++|+.|+..+ .++.|+|.+
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~ 39 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence 344579999999999999999999987 589999984
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.96 E-value=0.011 Score=50.78 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=31.0
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.++|||+|+.|+.+|..+++.|.+|+++++.+.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~ 41 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 4899999999999999999999999999987643
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.92 E-value=0.0076 Score=50.24 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=31.4
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
..+.+++|||+|.-|.+.|..|++.|++|+|+.++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 34468999999999999999999999999999884
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.82 E-value=0.012 Score=52.16 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=30.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999865
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.81 E-value=0.013 Score=50.33 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=31.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.|+|||+|+.|+.+|..+++.|.+|+++++.+.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~ 40 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 5899999999999999999999999999987654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0081 Score=50.20 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=32.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
-++|.|||+|..|..+|..+++.|.+|+++++.+.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 47999999999999999999999999999987764
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.74 E-value=0.016 Score=55.32 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=40.1
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCCCCCceecc
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRGALGGTCLN 84 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~ 84 (507)
...|||||+|-|..=--.|..|++.|.+|+=+|+++..||.|..
T Consensus 4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aS 47 (491)
T d1vg0a1 4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWAS 47 (491)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCE
T ss_pred CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccc
Confidence 34699999999999999999999999999999999999998753
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.73 E-value=0.013 Score=49.49 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++|.|||.|..|+..|..|++.|++|+.+|.+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 36999999999999999999999999999984
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.019 Score=41.43 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.+|+++|+|.|.+|+.+|..|.+.|.+|++++.++.
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 478999999999999999999999999999986553
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.016 Score=48.33 Aligned_cols=32 Identities=34% Similarity=0.405 Sum_probs=30.4
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+|.|||+|.-|...|..+++.|++|+++|++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~ 36 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT 36 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999984
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.39 E-value=0.017 Score=47.34 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.|+|+|+|+|.+|..+|..|.+.|.+|+++.|..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 4899999999999999999999999999999875
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=94.33 E-value=0.085 Score=45.26 Aligned_cols=32 Identities=47% Similarity=0.578 Sum_probs=27.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~ 247 (507)
.++|||+|+.|+.+|..++++|. +|.+++...
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~ 37 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK 37 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 58999999999999999999884 588887554
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.28 E-value=0.0097 Score=49.44 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
-++|.|||+|..|..+|..+++.|.+|+++++.+.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 47899999999999999999999999999987654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.24 E-value=0.022 Score=47.15 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=30.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+|.|||+|.-|...|..+++.|++|+++|++
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~ 36 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDIN 36 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence 57999999999999999999999999999984
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.09 E-value=0.023 Score=46.76 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.|++.|||+|..|.-+|..|++.|.+|+++.|.+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999999999999999999999999998754
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.04 Score=41.21 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=30.1
Q ss_pred CCcEEEECCCh-----------HHHHHHHHHHHCCCcEEEEecCC
Q 010573 43 ENDVVVIGGGP-----------GGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~G~-----------aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
..+|+|||+|| ++..|+..|++.|+++++|..++
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP 48 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP 48 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence 46899999996 78899999999999999998754
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.06 E-value=0.02 Score=51.49 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=29.3
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~ 247 (507)
+|+|||+|.+|+-+|..|++.|. +|+++++++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 69999999999999999999995 799999874
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.99 E-value=0.023 Score=50.36 Aligned_cols=33 Identities=27% Similarity=0.512 Sum_probs=30.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~ 37 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 489999999999999999999999999998653
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.046 Score=40.69 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=32.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
..++|.|||||.=|...|..+++.|+++.++|+.+
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~ 44 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA 44 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 44689999999999999999999999999999864
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=93.88 E-value=0.022 Score=52.26 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=31.0
Q ss_pred eEEEEcCcHHHHHHHHHHH-----hcCCeeEEEcccCccC
Q 010573 216 KLVVIGAGYIGLEMGSVWA-----RLGSEVTVVEFAADIV 250 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~-----~~g~~Vtlv~~~~~~~ 250 (507)
.|+|||+|++|+-+|..|+ +.|.+|+++++.+.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence 5999999999999999996 5799999999987653
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.60 E-value=0.038 Score=44.05 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRG 76 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~ 76 (507)
+.+.++|.|||+|..|.++|+.|+..+. +++|+|.++
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence 3456899999999999999998888774 899999743
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.60 E-value=0.084 Score=40.62 Aligned_cols=32 Identities=13% Similarity=0.496 Sum_probs=29.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
+|+|+|+|..|..++..|.+.|.+|++++..+
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 68999999999999999999999999998643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.58 E-value=0.037 Score=44.60 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=30.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
+|+|+|+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 689999999999999999999999999988653
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.55 E-value=0.025 Score=46.49 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
++|.|||+|.-|.+.|..|++.|++|.|+.+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r 31 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence 4799999999999999999999999999976
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=93.48 E-value=0.055 Score=42.92 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCCcEEEEC-CChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIG-GGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG-~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
...+|.||| .|.-|.+.|..|++.|++|.++|++
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~ 42 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE 42 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccc
Confidence 446899999 6999999999999999999999984
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.42 E-value=0.037 Score=44.65 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++|.|||.|.-|.+.|..|++.|++|+++|++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 36999999999999999999999999999983
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.041 Score=44.66 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
+..+|+|+|+|-|+.+++..|.+.|.+|.|+.|
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nR 49 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNR 49 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccc
Confidence 346899999999999999999999999999988
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.38 E-value=0.041 Score=43.50 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=30.6
Q ss_pred CCCCCcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 40 ASDENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
+....+|.|||+|..|.++|+.|...+. ++.|+|.+
T Consensus 3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~ 40 (148)
T d1ldna1 3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (148)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence 3445689999999999999999998764 79999973
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=93.00 E-value=0.041 Score=49.39 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=70.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----------CC----------------------------CH-
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------SM----------------------------DG- 255 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~~----------------------------d~- 255 (507)
.|+|||+|..|+-+|..+++.|.+|+++++.+.... .. ++
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 97 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPA 97 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccchH
Confidence 599999999999999999999999999998754310 00 11
Q ss_pred ------------------------------------------------HHHHHHHHHHHhcCcEEEcCceEEEEEEcCC-
Q 010573 256 ------------------------------------------------EIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD- 286 (507)
Q Consensus 256 ------------------------------------------------~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~- 286 (507)
.+...+.+.+++.|++++++++++++..+++
T Consensus 98 lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G 177 (308)
T d1y0pa2 98 LVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG 177 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS
T ss_pred HHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc
Confidence 1223334556678999999999999876654
Q ss_pred eEE-EEEeecCCCceEEEEcCEEEEeec
Q 010573 287 GVK-LTLEPAAGGEKTILEADVVLVSAG 313 (507)
Q Consensus 287 ~v~-v~~~~~~~g~~~~i~~D~vi~a~G 313 (507)
.+. +.+.+.. +....+.++.||+|+|
T Consensus 178 ~V~Gv~~~~~~-~~~~~i~Ak~VVlAtG 204 (308)
T d1y0pa2 178 TVKGILVKGMY-KGYYWVKADAVILATG 204 (308)
T ss_dssp CEEEEEEEETT-TEEEEEECSEEEECCC
T ss_pred ccccccccccc-cceeEeecCeEEEccC
Confidence 444 5554432 2345789999999998
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=92.71 E-value=0.048 Score=50.30 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=31.1
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.|+|||+|..|+-+|..|++.|.+|.+++++.++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~ 37 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW 37 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCC
Confidence 4899999999999999999999999999997543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.57 E-value=0.047 Score=42.24 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=30.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
|+++|+|.|..|..+|..|.+.|.+|++++..+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 679999999999999999999999999998654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.48 E-value=0.056 Score=44.73 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=29.1
Q ss_pred CcEEEE-CCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVI-GGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvII-G~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++|.|| |+|.-|.+.|..|++.|++|++.+|+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~ 33 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 368999 66999999999999999999999984
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=92.47 E-value=0.1 Score=41.54 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
..+|.|||+|..|.++|+.|...|. ++.|+|.+
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 4699999999999999999999986 79999983
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=92.44 E-value=0.055 Score=49.97 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.++|||+|..|+-+|..|++.|.+|++++++..
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 489999999999999999999999999998754
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=92.27 E-value=0.085 Score=42.53 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK 74 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~ 74 (507)
.+.+|+|||+|-++.+++..|.+.|. +|.|+.|
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR 49 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR 49 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence 35689999999999999999999996 7999988
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=92.18 E-value=0.059 Score=48.71 Aligned_cols=160 Identities=22% Similarity=0.264 Sum_probs=101.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC---------------------CC------------------C--
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP---------------------SM------------------D-- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---------------------~~------------------d-- 254 (507)
.|+|||+|..|+-+|..+++.|.+|.++++.+.... .. +
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 104 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPE 104 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCHH
Confidence 599999999999999999999999999998654210 00 0
Q ss_pred -----------------------------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCC-
Q 010573 255 -----------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGD- 286 (507)
Q Consensus 255 -----------------------------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~- 286 (507)
..+...+.+...+.|++++++++++++..+++
T Consensus 105 ~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G 184 (322)
T d1d4ca2 105 LVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG 184 (322)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSS
T ss_pred HhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccccc
Confidence 12333445566678999999999999876543
Q ss_pred eEE-EEEeecCCCceEEEEcCEEEEeecCCCC-----------CCCC------------------------CCcccCcee
Q 010573 287 GVK-LTLEPAAGGEKTILEADVVLVSAGRTPF-----------TAGL------------------------GLDKIGVET 330 (507)
Q Consensus 287 ~v~-v~~~~~~~g~~~~i~~D~vi~a~G~~p~-----------~~~l------------------------~~~~~gl~~ 330 (507)
.+. +.+.+.. +....+.++.||+|+|--.. ...+ ..+..++.+
T Consensus 185 ~V~Gv~~~~~~-~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~ 263 (322)
T d1d4ca2 185 KVTGVLVKGEY-TGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGLVI 263 (322)
T ss_dssp CCCEEEEEETT-TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECC
T ss_pred cccceEEEeec-ccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccceEEe
Confidence 333 4444322 23456999999999982211 0000 011112233
Q ss_pred cCCCCeecCCCCCCCCCCeEEecCCCCCC----CcHhH----HHHHHHHHHHHHc
Q 010573 331 DKMGRIPVNERFATNIPGVYAIGDVIPGP----MLAHK----AEEDGVACVEFLA 377 (507)
Q Consensus 331 ~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~----~~~~~----A~~~g~~aa~~i~ 377 (507)
+..+.+ +++..+|.+|+|||+|+|+++. .+..+ +.--|++|+.++.
T Consensus 264 ~~~~~~-~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g~~ag~~aa 317 (322)
T d1d4ca2 264 DTKAEV-KSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAA 317 (322)
T ss_dssp CTTCEE-EBTTTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cCceEE-EECCCCCEeCceEEchhhcCCccccccchhhHHHHHHHHHHHHHHHHH
Confidence 333322 3445568899999999998532 23333 4444777777764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.06 E-value=0.075 Score=42.93 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++..++..|.+|+++|++
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~ 59 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS 59 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchH
Confidence 36999999999999999998899999999984
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.90 E-value=0.069 Score=43.15 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++..++..|.+|++++++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~ 60 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRS 60 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccc
Confidence 46999999999999988888889999999984
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.76 E-value=0.072 Score=49.47 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=101.0
Q ss_pred eEEEEcCcHHHHHHHHHHHh------cCCeeEEEcccCccCCC------CC-----------------------------
Q 010573 216 KLVVIGAGYIGLEMGSVWAR------LGSEVTVVEFAADIVPS------MD----------------------------- 254 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~------~g~~Vtlv~~~~~~~~~------~d----------------------------- 254 (507)
.|+|||+|+.|+-+|..|++ .|.+|.++++...+... ++
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~~ 113 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFGI 113 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEEE
Confidence 69999999999999999987 79999999988655210 11
Q ss_pred ---------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEcCCeEEEEEee-----cCCC----
Q 010573 255 ---------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLSGDGVKLTLEP-----AAGG---- 298 (507)
Q Consensus 255 ---------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~-----~~~g---- 298 (507)
.....++.+..+..|+.+.....+.++..+++++...... ...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 193 (380)
T d2gmha1 114 LTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKT 193 (380)
T ss_dssp ECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEE
T ss_pred eeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccc
Confidence 2445566677788899999999999887765543322111 0000
Q ss_pred ---ceEEEEcCEEEEeecCCCCCCCCCCcccCc--eecCCCCeecCCCCCCCCCCeEEecCCCCCC-----CcHhHHHHH
Q 010573 299 ---EKTILEADVVLVSAGRTPFTAGLGLDKIGV--ETDKMGRIPVNERFATNIPGVYAIGDVIPGP-----MLAHKAEED 368 (507)
Q Consensus 299 ---~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl--~~~~~G~i~Vd~~~~t~~~~IyA~GD~a~~~-----~~~~~A~~~ 368 (507)
.......+..+++.|.+.....-.++...+ .....+++. .--+...+|+..+||+++.- .-.+.|+..
T Consensus 194 ~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~S 271 (380)
T d2gmha1 194 TFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKS 271 (380)
T ss_dssp EEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHH
T ss_pred cccccccccccEEEEeeeCCCcchHHHHhhhhhccccccccccc--cccccccCCeeEEeccccccchhhcCCeeeeecc
Confidence 112455778888888655331000111101 011111111 01123568999999999642 256889999
Q ss_pred HHHHHHHHc
Q 010573 369 GVACVEFLA 377 (507)
Q Consensus 369 g~~aa~~i~ 377 (507)
|+.||+.+.
T Consensus 272 G~lAAeai~ 280 (380)
T d2gmha1 272 GTLAAESIF 280 (380)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999885
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=91.74 E-value=0.076 Score=48.84 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=31.4
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.++|||+|..|+-+|..|++.|.+|.++++++..
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 5899999999999999999999999999987654
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.092 Score=35.97 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=30.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
|+|.|+|+|..|-.++....++|.++.++...+
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 689999999999999999999999999997654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.72 E-value=0.1 Score=41.30 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++||+|.|.-|...+..|.+.|.+|++||.+
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d 35 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEecc
Confidence 6999999999999999999999999999984
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.09 Score=42.52 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=28.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++.-++..|. +|+++|++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~ 60 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 60 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence 369999999999999999999998 69999883
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.56 E-value=0.077 Score=36.39 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
+.|.|||||.=|...+....+.|+++.++|..+
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 468999999999999999999999999999854
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.55 E-value=0.1 Score=41.96 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++.-++..|.+|+.+|++
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence 46999999999999999888899999999983
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.54 E-value=0.031 Score=43.82 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCC--eeEEEcccCcc--CCCCCHHHHHHHHHHHHhcCcEEEcCce--EEEEEEcCCeEEEEEeecCCCce
Q 010573 227 LEMGSVWARLGS--EVTVVEFAADI--VPSMDGEIRKQFQRSLEKQKMKFMLKTK--VVGVDLSGDGVKLTLEPAAGGEK 300 (507)
Q Consensus 227 ~e~A~~l~~~g~--~Vtlv~~~~~~--~~~~d~~~~~~~~~~l~~~Gv~i~~~~~--v~~i~~~~~~v~v~~~~~~~g~~ 300 (507)
+-++..|.+.|. ++.++...+.. .+.+.+...+.+.+.+++.||+++.+.. +.+++.... .+++. ++
T Consensus 56 ~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~--~~~~~-----~G 128 (141)
T d1fcda2 56 SQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEM--MVETA-----FG 128 (141)
T ss_dssp HHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTT--EEEET-----TC
T ss_pred HHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcE--EEEeC-----CC
Confidence 334455666664 67776655532 1122244566677777889999998764 556654443 34443 56
Q ss_pred EEEEcCEEEEe
Q 010573 301 TILEADVVLVS 311 (507)
Q Consensus 301 ~~i~~D~vi~a 311 (507)
+++++|++.+.
T Consensus 129 e~v~yD~l~vv 139 (141)
T d1fcda2 129 DEFKADVINLI 139 (141)
T ss_dssp CEEECSEEEEC
T ss_pred cEEeeeEEEeC
Confidence 78999998864
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=91.46 E-value=0.077 Score=47.82 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=72.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCC-----------C----------CC-------------------
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVP-----------S----------MD------------------- 254 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----------~----------~d------------------- 254 (507)
-.|+|||+|..|+-.|..+++.|.+|.++++.+.... . .|
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~ 99 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 99 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccch
Confidence 3599999999999999999999999999998654310 0 00
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhcCcEEEcCceEEEEEEc-C
Q 010573 255 ------------------------------------------------GEIRKQFQRSLEKQKMKFMLKTKVVGVDLS-G 285 (507)
Q Consensus 255 ------------------------------------------------~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~ 285 (507)
+.+...+.+.+++.|++++++++++++..+ +
T Consensus 100 ~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~ 179 (317)
T d1qo8a2 100 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD 179 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred hHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeeccc
Confidence 134445566677889999999999998664 4
Q ss_pred CeEE-EEEeecCCCceEEEEcCEEEEeecC
Q 010573 286 DGVK-LTLEPAAGGEKTILEADVVLVSAGR 314 (507)
Q Consensus 286 ~~v~-v~~~~~~~g~~~~i~~D~vi~a~G~ 314 (507)
+.+. +.+.. .++....+.++.||+|+|-
T Consensus 180 g~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG 208 (317)
T d1qo8a2 180 HSVVGAVVHG-KHTGYYMIGAKSVVLATGG 208 (317)
T ss_dssp SBEEEEEEEE-TTTEEEEEEEEEEEECCCC
T ss_pred ccceeeEeec-ccceEEEEeccceEEeccc
Confidence 4444 44443 3344457899999999994
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=91.27 E-value=0.11 Score=40.44 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CcEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~ 76 (507)
++|.|||+|..|.+.|..|+..+ .++.|+|.++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 37999999999999999999987 4899999853
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=91.12 E-value=0.083 Score=47.90 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=29.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.|+|||+|+.|+-.|..+++.|.+|.++++.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 49999999999999999999999999998754
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=90.98 E-value=0.13 Score=36.91 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCCCCCcEEEECCChHHHHH-HHHHHHCCCcEEEEecC
Q 010573 38 ASASDENDVVVIGGGPGGYVA-AIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 38 ~~~~~~~dvvIIG~G~aGl~a-A~~l~~~g~~V~lie~~ 75 (507)
+.+....++-+||-|-+|+++ |..|.++|++|+--|..
T Consensus 3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~ 41 (96)
T d1p3da1 3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA 41 (96)
T ss_dssp CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 345667789999999999999 89999999999999983
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.97 E-value=0.078 Score=44.01 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=27.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++|.|||.|..|+..|..++ .|++|+.+|-+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din 31 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDIL 31 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSC
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECC
Confidence 46999999999999998886 59999999984
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=90.89 E-value=0.13 Score=40.03 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=28.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
.+|.|||+|..|.++|+.|...+. ++.|+|.+
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~ 35 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 35 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 479999999999999999998875 79999973
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.84 E-value=0.15 Score=40.45 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
.+|.|||+|..|.++|+.|...+. ++.|+|.+
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~ 53 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDAD 53 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 589999999999999999999875 79999973
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=90.76 E-value=0.14 Score=39.83 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=28.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--cEEEEecCC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~~ 76 (507)
.+|.|||+|..|.++|+.|...+. ++.|+|..+
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 379999999999999999999875 799999743
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=90.70 E-value=0.11 Score=40.77 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
.+|.|||+|..|.++|+.|...|. ++.|+|.+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 35 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 479999999999999999998764 79999973
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.60 E-value=0.25 Score=36.73 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=30.2
Q ss_pred CCeEEEEcCcH-----------HHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 214 PKKLVVIGAGY-----------IGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 214 ~~~vvVvG~G~-----------~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
.++++|+|+|+ .++.++..|++.|.++.++..+|.-
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT 50 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET 50 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 57899999985 5777889999999999999877654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.39 Score=37.61 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=39.8
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEcC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFMLK 275 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~~ 275 (507)
.+++|+|.|..|..++..|.+.|.++++++..+ +-.....+.+...|+.++.+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~--------~~~~~~~~~~~~~~~~vi~G 56 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP--------EDDIKQLEQRLGDNADVIPG 56 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC--------HHHHHHHHHHHCTTCEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc--------hhHHHHHHHhhcCCcEEEEc
Confidence 579999999999999999999999999997643 22233334445567877643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.43 E-value=0.14 Score=41.85 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=28.6
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++.-++..|. +|+++|++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~ 62 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred CEEEEECCCccchhheecccccccccccccccc
Confidence 469999999999999999999997 79999883
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.33 E-value=0.17 Score=40.26 Aligned_cols=34 Identities=29% Similarity=0.646 Sum_probs=31.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
|.+|+|+|+|..|+..+....++|.+|++++.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 7899999999999999999999999999998654
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=90.26 E-value=0.13 Score=40.01 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
.+|.|||+|..|.++|+.|+..+. ++.++|..
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~ 34 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence 479999999999999999988764 89999974
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.13 E-value=0.033 Score=47.90 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=24.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEE
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVV 243 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv 243 (507)
+|+|||+|.+|+-.|..|++.|.+|+++
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~ 29 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQP 29 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSS
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEE
Confidence 6999999999999999999999754433
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.04 E-value=0.2 Score=40.50 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=31.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
|-+|+|+|+|..|+..+....++|..|++++.+.
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 6799999999999999999999999999998765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=89.88 E-value=0.15 Score=40.92 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=28.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++.-++..|.++++++..
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~ 63 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS 63 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence 47999999999999998888899999999873
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=89.67 E-value=0.15 Score=41.10 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=33.2
Q ss_pred ccCCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 210 LNEVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 210 ~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
....+|+|+|+|+|-++--++..|.+.|.+++++.|..
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 33457999999999999999999999999999998764
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.62 E-value=0.14 Score=39.85 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=28.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
++|.|||+|..|.+.|+.|+..+. ++.|+|.+
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence 479999999999999999998763 79999973
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.59 E-value=0.17 Score=39.47 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=28.2
Q ss_pred CcEEEECC-ChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 44 NDVVVIGG-GPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~-G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
++|.|||+ |..|.++|+.|+..+. ++.|+|.+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~ 35 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE 35 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence 37999996 9999999999999884 89999973
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.44 E-value=0.29 Score=36.08 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=31.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
..+|.|+|||..|..++....++|.++.+++..+.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 46799999999999999999999999999986643
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.19 Score=41.72 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=30.3
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+.+|+|+|| |..|...+.+|.+.|++|+++.|+
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~ 36 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD 36 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence 468999996 999999999999999999999884
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=89.24 E-value=0.15 Score=41.09 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
...+++|+|+|-++.+++..|.+.+.+|.|+.|.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~ 50 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 50 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence 3568999999999999999999988899999983
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.19 E-value=0.9 Score=38.14 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCCcEEEECCChHHHHHHHHHHHC--------------------C-CcEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQL--------------------G-LKTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~--------------------g-~~V~lie~~~ 76 (507)
...+|+|||+|-.++=+|..|.+. | .+|.+|.++.
T Consensus 38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg 93 (225)
T d1cjca1 38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 93 (225)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence 357999999999999999999883 5 4799998864
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.18 E-value=0.19 Score=40.04 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
.+|-|||-|.-|...|.+|.+.|++|.++|++
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~ 33 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV 33 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence 46999999999999999999999999999983
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=89.03 E-value=0.19 Score=40.05 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=29.4
Q ss_pred cEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+|-|||-|.-|...|.+|.+.|++|.++|++
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~ 32 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN 32 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence 6899999999999999999999999999983
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.93 E-value=0.19 Score=40.58 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++..++..|. +|+++|.+
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR 61 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence 469999999999999999998896 69999873
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.87 E-value=0.17 Score=39.21 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.8
Q ss_pred CcEEEECCChHHHHHHHHHHHCC--CcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG--LKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~ 75 (507)
++|.|||+|..|.++|..|...+ .++.|+|.+
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~ 34 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 37999999999999999988876 479999973
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=0.27 Score=39.99 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
..+|+|||+|-+|.+++..|.+.|. +++|++|.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~ 51 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 51 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc
Confidence 4689999999999999999999986 68899884
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.58 E-value=0.22 Score=38.81 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=27.4
Q ss_pred cEEEECC-ChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 45 DVVVIGG-GPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~-G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
+|.|||| |..|.++|+.|+..+. ++.|+|.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence 6899996 9999999999998874 69999974
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=88.38 E-value=0.14 Score=46.22 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=29.6
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 48999999999999999999999999998754
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=88.11 E-value=0.14 Score=42.19 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=29.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
++++|+|+|..|.-+|..|++.|.+|+++.|.+
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 579999999999999999999999999987643
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.07 E-value=0.45 Score=39.33 Aligned_cols=52 Identities=19% Similarity=0.402 Sum_probs=38.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCcc--------CCCCCHHHHHHHHHHHHh
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAADI--------VPSMDGEIRKQFQRSLEK 267 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~--------~~~~d~~~~~~~~~~l~~ 267 (507)
+|.|||.|++|+-+|..|++.|.+|+.++..... .+..++.+.+.+.+....
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~ 61 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQT 61 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHT
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcc
Confidence 5899999999999999999999999999865432 234455555555554443
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=88.02 E-value=0.23 Score=45.45 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=30.5
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
.++|||+|..|+-+|..|++.|.+|.++++++.
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 479999999999999999999999999998853
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=88.02 E-value=0.23 Score=40.13 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCc-EEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLK-TTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~-V~lie~~ 75 (507)
-.|+|+|+|+-|+.++..++..|.+ |+++|.+
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~ 62 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN 62 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence 4699999999999999999999985 6677763
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=88.00 E-value=0.13 Score=39.15 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=28.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHC-CCc-EEEEecCCCCCc
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQL-GLK-TTCIEKRGALGG 80 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~-g~~-V~lie~~~~~GG 80 (507)
.++++|+|||-+|.+.+.++.+. +++ +.+||.++..-|
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G 42 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG 42 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC
Confidence 46899999999999888776543 566 677887665444
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.28 Score=38.77 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
-.+|+++|+|-|.+|-.+|..++.+|.+|++.+..|
T Consensus 22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred ecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 348999999999999999999999999999998754
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.87 E-value=0.35 Score=37.84 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=27.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
.+|.|||+|..|.+.|..|...+. ++.|+|.+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~ 36 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV 36 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 589999999999999998888764 79999974
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=87.81 E-value=0.29 Score=39.53 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++|-|||-|.-|...|.+|.+.|++|.++|++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~ 33 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT 33 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence 47999999999999999999999999999983
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.78 E-value=0.24 Score=40.10 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHHCC-CcEEEEecC
Q 010573 45 DVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKR 75 (507)
Q Consensus 45 dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~ 75 (507)
.|+|+|+|+.|+.++..++..| .+|+.+|.+
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~ 63 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN 63 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence 5999999999999999999998 579999984
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=87.68 E-value=0.51 Score=36.92 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=27.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~ 247 (507)
++.+||+|..|.-++..|.+.| .+++++.|++
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 5889999999999999888877 7888877654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.58 E-value=0.25 Score=39.44 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=28.3
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
-.|+|+|+|+.|+.++..++..|.+|++++.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~ 59 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDI 59 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCC
Confidence 4699999999999999999999999999987
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.58 E-value=0.26 Score=38.74 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
++|-|||.|..|...|..|++.|++|+++++.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~ 32 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEG 32 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCc
Confidence 36899999999999999999999999999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.38 E-value=0.29 Score=40.31 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=27.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCC-cEEEEec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK 74 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~ 74 (507)
.-.|+|+|+|+.|+.++..++..|. +|+++|.
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~ 58 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL 58 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence 3479999999999999999988876 6888877
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=87.20 E-value=0.82 Score=40.04 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=42.0
Q ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEEc
Q 010573 214 PKKLVVIGA-GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFML 274 (507)
Q Consensus 214 ~~~vvVvG~-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~~ 274 (507)
.++|+|+|| |.+|-.++..|.+.|.+|+.+.|.+.. .+.. .......+...+++++.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~---~~~~-~~~~~~~~~~~~v~~v~ 60 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV---SNID-KVQMLLYFKQLGAKLIE 60 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS---SCHH-HHHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc---cchh-HHHHHhhhccCCcEEEE
Confidence 467999996 999999999999999999999886532 2222 22334556677888763
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.94 E-value=0.25 Score=39.96 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
+..+++|||+|-++-++++.|.+.+ +|.|+.|
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR 48 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANR 48 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehh
Confidence 3468999999999999999998776 8999988
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=86.79 E-value=0.28 Score=38.89 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=29.5
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK 74 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~ 74 (507)
....++|||+|..|...|.+|...|. +++++.|
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR 56 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR 56 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC
Confidence 35689999999999999999999997 5889987
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.67 E-value=0.38 Score=43.81 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=32.0
Q ss_pred CCCCCcEEEECC-ChHHHHHHHHHHHCCCcEEEEecC
Q 010573 40 ASDENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 40 ~~~~~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
|.++++|+|.|| |+-|-..+.+|.+.|++|+++|+.
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~ 48 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK 48 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence 446778999996 999999999999999999999874
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.61 E-value=0.28 Score=40.08 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=28.8
Q ss_pred eEEEE-cCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 216 KLVVI-GAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVv-G~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
+|.|+ |+|.+|..+|..|++.|.+|++..|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58899 679999999999999999999998764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=86.53 E-value=0.36 Score=37.82 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=31.6
Q ss_pred CCCeEEEEc-CcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 213 VPKKLVVIG-AGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.-++|.||| .|..|.-+|..|.+.|.+|+++.+..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 357999999 69999999999999999999998765
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=86.45 E-value=0.41 Score=38.56 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=30.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
-+|-|||-|.-|...|.+|.+.|++|.++|+.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~ 34 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRT 34 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47999999999999999999999999999984
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.06 E-value=0.39 Score=38.37 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=28.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC--cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL--KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~--~V~lie~~ 75 (507)
.++.|||.|.-|.+.|..|++.|+ +|..+|++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~ 35 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN 35 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 369999999999999999999985 68888884
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=85.83 E-value=0.42 Score=41.79 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.1
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 43 ENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 43 ~~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
+.+|+|+|| |.-|-..+..|.+.|++|.+++|+.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 468999998 9999999999999999999999853
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=85.82 E-value=0.4 Score=42.22 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHCCCcEEEEecC
Q 010573 43 ENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 43 ~~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+.+|+|+|| |..|...+.+|.+.|++|+++.|+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~ 36 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP 36 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 457999997 999999999999999999999884
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.23 E-value=0.4 Score=38.81 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=28.7
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
+|.|+|+|..|.-+|..|++.|.+|+++.|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 5899999999999999999999999998764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=85.19 E-value=0.41 Score=38.07 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=28.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
+|.|||.|..|.-+|..|.+.|.+|+.++|.+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 58999999999999999999999999887653
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=85.03 E-value=1.1 Score=38.97 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=41.5
Q ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEEE
Q 010573 214 PKKLVVIGA-GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKFM 273 (507)
Q Consensus 214 ~~~vvVvG~-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i~ 273 (507)
.++|+|+|+ |.+|-.++..|.+.|.+|+.+.|.+.... +.+... ....+...+++++
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~--~~~~~~-~~~~~~~~~~~~~ 60 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS--NSEKAQ-LLESFKASGANIV 60 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT--THHHHH-HHHHHHTTTCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc--chhHHH-HHHhhccCCcEEE
Confidence 378999996 99999999999999999999998764322 222222 3345556677765
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=85.01 E-value=0.52 Score=38.54 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.4
Q ss_pred CCCcEEEECC-ChHHHHHHHHHHHCCCcEEEEecC
Q 010573 42 DENDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 42 ~~~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
+...++|.|| |-.|...|..|++.|.+|++++++
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~ 56 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK 56 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence 4568999995 889999999999999999999994
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=84.04 E-value=0.45 Score=43.96 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=30.2
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~ 248 (507)
.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus 26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 5899999999999999999988 69999999864
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.79 E-value=0.59 Score=37.20 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=31.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.+++|+|+|+|.+|.-.++.+...|.+|..+++++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 47899999999999999988888999998887765
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.75 E-value=0.39 Score=38.65 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++..++..|. +|+++|.+
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~ 61 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence 369999999999999999999986 68888773
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=83.70 E-value=0.61 Score=38.05 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=31.8
Q ss_pred CCCeEEEEc-CcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 213 VPKKLVVIG-AGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.+|+++|.| +|-+|.++|..|.+.|.+|+++.|..
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 479999998 68999999999999999999998875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.69 E-value=0.5 Score=37.29 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
.-..++|||-|..|-.+|..|+..|.+|+++|.
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~ 55 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEI 55 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeec
Confidence 346799999999999999999999999999998
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.45 E-value=0.66 Score=37.49 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=31.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
++++.|||.|.+|-++|..+..+|.+|..+.+.+
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CceEEEeccccccccceeeeeccccccccccccc
Confidence 7899999999999999999999999999987654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=83.05 E-value=0.61 Score=37.12 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.+++|+|+|+|.+|+-.++.+...|.+|..+++.+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 47899999999999999999999999999887654
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=83.03 E-value=0.65 Score=36.65 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=30.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccC
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~ 247 (507)
..++++|||+|.+|..++..|...|. +++++.|..
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~ 58 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY 58 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence 47899999999999999999999997 588887753
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=82.26 E-value=0.45 Score=40.74 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~ 74 (507)
.+|+|||+|.-|-.+|..|++.|. +++|+|.
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 62 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 62 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 589999999999999999999997 7999997
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.16 E-value=1.3 Score=37.69 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=37.2
Q ss_pred CCeEEEEcCc-HHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 214 PKKLVVIGAG-YIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 214 ~~~vvVvG~G-~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
+|.++|.|++ -+|.++|..|++.|.+|.+..|+. +-.+.+.+.+++.|.++
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~--------~~l~~~~~~~~~~~~~~ 58 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK--------HGLEETAAKCKGLGAKV 58 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHHHHHTTCCE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHhcCCcE
Confidence 6777777765 499999999999999999988754 33344555566665543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=82.05 E-value=0.75 Score=36.82 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=26.2
Q ss_pred CCcEEEECCChHHHHHHHHHHHCCCcEEE-Eec
Q 010573 43 ENDVVVIGGGPGGYVAAIKAAQLGLKTTC-IEK 74 (507)
Q Consensus 43 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~l-ie~ 74 (507)
.-+|+|+|+|+.|+.++.-++..|.++++ +|.
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~ 61 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence 34799999999999999999888887654 554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=81.94 E-value=1.3 Score=38.12 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=39.4
Q ss_pred CCCeEEEEcC-cHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 213 VPKKLVVIGA-GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 213 ~~~~vvVvG~-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
.+|.++|.|+ +-+|.++|..|++.|.+|.++.++. +-.+.+.+.+++.|.++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~--------~~l~~~~~~~~~~g~~~ 56 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR--------EALEKAEASVREKGVEA 56 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHhcCCcE
Confidence 3678888876 4589999999999999999988643 44455666777776554
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=81.94 E-value=0.74 Score=35.49 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=26.7
Q ss_pred cEEEEC-CChHHHHHHHHHHHCCC--cEEEEec
Q 010573 45 DVVVIG-GGPGGYVAAIKAAQLGL--KTTCIEK 74 (507)
Q Consensus 45 dvvIIG-~G~aGl~aA~~l~~~g~--~V~lie~ 74 (507)
+|.||| +|..|.++|+.|...+. ++.|+|.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence 699999 69999999999999874 7999985
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=81.74 E-value=0.66 Score=37.10 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=27.1
Q ss_pred CcEEEECCChHHHHHHHHHHHCCC-cEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~ 75 (507)
-.|+|+|+|+.|+.++..++..+. +|+.+|+.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~ 62 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN 62 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence 358999999999999999999875 68888873
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.67 E-value=0.65 Score=35.97 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=26.1
Q ss_pred CcEEEEC-CChHHHHHHHHHHH-C--CCcEEEEecC
Q 010573 44 NDVVVIG-GGPGGYVAAIKAAQ-L--GLKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG-~G~aGl~aA~~l~~-~--g~~V~lie~~ 75 (507)
++|.||| +|..|.+.|+.|.. . ..++.|+|.+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~ 36 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 4799999 59999999998863 3 4689999974
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=81.53 E-value=0.52 Score=41.67 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=28.6
Q ss_pred CeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccCc
Q 010573 215 KKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAAD 248 (507)
Q Consensus 215 ~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~ 248 (507)
-.|+|||+|..|+-.|..+++.| +|.+++..+.
T Consensus 8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~ 40 (305)
T d1chua2 8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPV 40 (305)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHhhcCC-CEEEEECCCC
Confidence 35999999999999999888877 8999998764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=81.45 E-value=0.75 Score=36.09 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
-.+|+++|+|-|..|--+|..++.+|.+|++.+..|
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred ecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 348999999999999999999999999999998765
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.42 E-value=1.4 Score=37.68 Aligned_cols=50 Identities=20% Similarity=0.263 Sum_probs=35.8
Q ss_pred CeEE-EEcC-cHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 215 KKLV-VIGA-GYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 215 ~~vv-VvG~-G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
|+|+ |.|+ +-+|.++|..|++.|.+|.+..|++ +-.+.+.+.+++.|.++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~--------~~l~~~~~~i~~~g~~~ 52 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND--------ATAKAVASEINQAGGHA 52 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHHHHHTTCCE
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHhcCCcE
Confidence 4664 4454 4699999999999999999988753 34455666667666543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=81.33 E-value=0.82 Score=38.03 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=30.3
Q ss_pred CCCcEEEECCChHHHHHHHHHHHCCC-cEEEEecCC
Q 010573 42 DENDVVVIGGGPGGYVAAIKAAQLGL-KTTCIEKRG 76 (507)
Q Consensus 42 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~V~lie~~~ 76 (507)
.+.++|+.|+|.||+..|..+.+.+. ++.++|+..
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G 60 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG 60 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence 45789999999999999999988864 699999853
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=80.97 E-value=0.72 Score=37.18 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCC-eeEEEcccC
Q 010573 213 VPKKLVVIGAGYIGLEMGSVWARLGS-EVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~~~ 247 (507)
.+++|+|+|+|.+|+-.+..+..+|. +|+.+++++
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCCEEEEECCCccchhheeccccccccccccccccc
Confidence 37899999999999999999999997 688887654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=80.91 E-value=0.9 Score=37.23 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCeeEEEccc
Q 010573 214 PKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFA 246 (507)
Q Consensus 214 ~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~ 246 (507)
+++|.|||-|.+|-++|..+..+|.+|....+.
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~ 75 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF 75 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence 689999999999999999999999999887643
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.85 E-value=0.71 Score=36.06 Aligned_cols=31 Identities=13% Similarity=-0.031 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
+++.|||+|--|-+.|..|.+.++++++.++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r 31 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGS 31 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECS
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcC
Confidence 3689999999999999999999999999988
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.71 E-value=1 Score=36.90 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCeEEEEc-CcHHHHHHHHHHHhcCCeeEEEcccCccC
Q 010573 214 PKKLVVIG-AGYIGLEMGSVWARLGSEVTVVEFAADIV 250 (507)
Q Consensus 214 ~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~ 250 (507)
.|+|+|+| .|.+|-.++..|.+.|.+|+.+.|++.-+
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~ 40 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL 40 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc
Confidence 47899999 59999999999999999999999876533
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.70 E-value=2 Score=36.69 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=40.1
Q ss_pred CCCeEEEEc-CcHHHHHHHHHHHhcCCeeEEEcccCccCCCCCHHHHHHHHHHHHhcCcEE
Q 010573 213 VPKKLVVIG-AGYIGLEMGSVWARLGSEVTVVEFAADIVPSMDGEIRKQFQRSLEKQKMKF 272 (507)
Q Consensus 213 ~~~~vvVvG-~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~d~~~~~~~~~~l~~~Gv~i 272 (507)
.+|.++|.| ++-+|.++|..|++.|.+|.++.|++ +-.+.+.+.+++.+..+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~--------~~l~~~~~~~~~~~~~~ 57 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE--------KELDECLEIWREKGLNV 57 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--------HHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHhcCCCc
Confidence 478899998 55699999999999999999998754 33344556677776654
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.48 E-value=1.1 Score=35.72 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=27.7
Q ss_pred CcEEEECCChHHHHHHHHHHHCC-CcEEEEecC
Q 010573 44 NDVVVIGGGPGGYVAAIKAAQLG-LKTTCIEKR 75 (507)
Q Consensus 44 ~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~ 75 (507)
-.|+|+|+|..|+.++..++..| .+|+.++.+
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~ 62 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN 62 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence 35999999999999999999997 578888773
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.38 E-value=0.9 Score=34.02 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCCeEEEEcCcH-----------HHHHHHHHHHhcCCeeEEEcccCcc
Q 010573 213 VPKKLVVIGAGY-----------IGLEMGSVWARLGSEVTVVEFAADI 249 (507)
Q Consensus 213 ~~~~vvVvG~G~-----------~g~e~A~~l~~~g~~Vtlv~~~~~~ 249 (507)
..++|+|+|+|+ .+++++..|.+.|.++.++..++.-
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T 53 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT 53 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence 358999999986 5777889999999999999877653
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=80.34 E-value=0.75 Score=41.26 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=28.7
Q ss_pred CcEEEECC-ChHHHHHHHHHHHCCCcEEEEec
Q 010573 44 NDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEK 74 (507)
Q Consensus 44 ~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~ 74 (507)
++|+|+|| |+-|-..+..|.+.|++|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 36999998 89999999999999999999987
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.33 E-value=0.88 Score=35.95 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHhcCCeeEEEcccC
Q 010573 212 EVPKKLVVIGAGYIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 212 ~~~~~vvVvG~G~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
..+++|+|+|+|.+|+-.+..+...|.+|..+.+.+
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 347899999999999999999999999988887654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=80.28 E-value=0.62 Score=36.57 Aligned_cols=35 Identities=26% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCCCcEEEECCChHHHHHHHHHHHCCCcEEEEecC
Q 010573 41 SDENDVVVIGGGPGGYVAAIKAAQLGLKTTCIEKR 75 (507)
Q Consensus 41 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~ 75 (507)
-.-..++|+|=|..|-.+|.+|+..|.+|+++|.+
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~D 55 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEID 55 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred ecCCEEEEecccccchhHHHHHHhCCCEEEEEecC
Confidence 34568999999999999999999999999999983
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=80.27 E-value=0.52 Score=40.80 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=30.2
Q ss_pred CcEEEECC-ChHHHHHHHHHHHCCCcEEEEecCC
Q 010573 44 NDVVVIGG-GPGGYVAAIKAAQLGLKTTCIEKRG 76 (507)
Q Consensus 44 ~dvvIIG~-G~aGl~aA~~l~~~g~~V~lie~~~ 76 (507)
++|+|.|| |..|-..+.+|.+.|++|+.+++++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 57999998 9999999999999999999999853
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.10 E-value=0.67 Score=38.93 Aligned_cols=30 Identities=47% Similarity=0.505 Sum_probs=25.9
Q ss_pred eEEEEcCcHHHHHHHHHHHhcCC-eeEEEcc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLGS-EVTVVEF 245 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g~-~Vtlv~~ 245 (507)
.++|||+|+.|+.+|..+++.|. .|.+++.
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~ 35 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDV 35 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence 48999999999999999999885 5777765
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=80.10 E-value=1.2 Score=38.26 Aligned_cols=35 Identities=34% Similarity=0.455 Sum_probs=30.1
Q ss_pred CCCeEEEEcCc-HHHHHHHHHHHhcCCeeEEEcccC
Q 010573 213 VPKKLVVIGAG-YIGLEMGSVWARLGSEVTVVEFAA 247 (507)
Q Consensus 213 ~~~~vvVvG~G-~~g~e~A~~l~~~g~~Vtlv~~~~ 247 (507)
.+|.++|.|++ -+|..+|..|++.|.+|.++.|+.
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 43 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA 43 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 47888888765 599999999999999999998865
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=80.01 E-value=0.68 Score=42.51 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=29.8
Q ss_pred eEEEEcCcHHHHHHHHHHHhcC-CeeEEEcccCc
Q 010573 216 KLVVIGAGYIGLEMGSVWARLG-SEVTVVEFAAD 248 (507)
Q Consensus 216 ~vvVvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~ 248 (507)
.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus 19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~ 52 (385)
T d1cf3a1 19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSY 52 (385)
T ss_dssp EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 5899999999999999999876 79999999864
|