Citrus Sinensis ID: 010574

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------
MGRNLSNHSESPVRDQGGPSRRRSLSRKSPSRRERSPVLHRSSHRGSSPAREKERHSSRAKSPKRAQSQSPVSRSPSPRTRRLMRSRDERELGKVTEREQERNHSRKSDRGTHIGKSSSPSPRTRRLARARDEGDAERVTERDHERNNGRENGKGKLGERTRSPVSRSPSPRTKRLRRAHAEKDADKLTEKEHERNHSRTSDKEAHLPVSRSPSPHTKRLRRADAKVTERERENDHSRASDKDIHRERVSERETGSERKERRERDFEGDREGRKLGRNEASNQSSRSRRDRSTSPLDRPPRSRHRSPQSADGSWARHEVMNSGGAEYSRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENSND
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccEEccccccccccccccEEEEEEEccccccccEEEccccEEEcccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEEccccccccccccccccccEEEEccccEEEEcccccEEEEEcccccc
ccccccccccccccccccccHHccHHHcccccccccccccccccccccccHHHccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccEcEEEEEEccccccccccccEEEEEEccccEcccEEEEEccEEEEEcccccEEEcccccccccccEEEEEEEEEEccccccccccEEEEEEEEcccccccEEcccccccccEEEEEcccEEEEcccccEEEEEcccccc
mgrnlsnhsespvrdqggpsrrrslsrkspsrrerspvlhrsshrgssparekerhssrakspkraqsqspvsrspsprtrrlMRSRDERELGKVTEREQernhsrksdrgthigkssspsprtRRLARardegdaervterdhernngrengkgklgertrspvsrspsprtKRLRRAHAEKDADKltekehernhsrtsdkeahlpvsrspsphtkrlRRADAKVTererendhsrasdkdihrervseretgserkerrerdfegdregrklgrneasnqssrsrrdrstspldrpprsrhrspqsadgswaRHEVmnsggaeysrnddiDSVAQMKAAEEALQAKekqkpsfelsGKLAaetnrfrgvtllfneppdarkpsvrWRLYVFKAgemlkeplyihrqscylfgrerrvadiptdhpscskqHAVIQFRQVekeqpdgmlskevrpyimdlgstnktylndnpiepqrYYELFekdtikfgnssrEYVLLHENSND
mgrnlsnhsespvrdqggpsrrrslsrkspsrrerspvlhrsshrgssparekerhssrakspkraqsqspvsrspsprtrrlmrsrderelgkvtereqernhsrksdrgthigkssspsprtrrlarardegdaervterdhernngrengkgklgertrspvsrspsprtkrlrrahaekdadkltekehernhsrtsdkeahlpvsrspsphtkrlrradakvtererendhsrasdkdihrervseretgserkerrerdfegdregrklgrneasnqssrsrrdrstspldrpprsrhrspqsadgswaRHEVMNsggaeysrnDDIDSVAQMKAAEEALqakekqkpsfeLSGKLAAETNRFRGVTLlfneppdarkpsvRWRLYVFKagemlkeplyIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQvekeqpdgmlskEVRPYIMDLgstnktylndnPIEPQRYYELFEKDTIKFGNSSREYVLLHENSND
MGRNLSNHSESPVRDQGGpsrrrslsrkspsrrerspVLHRSSHRGSSPAREKERHSSRAKSPKRAQsqspvsrspsprtrrlmrsrDERELGKVTEREQERNHSRKSDRGTHIGKSSSPSPRTRRLARARDEGDAERVTERDHERNNGRENGKGKLGErtrspvsrspsprtKRLRRAHAEKDADKLTEKEHERNHSRTSDKEAHLPVSRSPSPHTKRLRRADAKVTERERENDHSRASDKDIHRERVSERETGSerkerrerdfegdregrkLGRNEASNQssrsrrdrstspldrpprsrhrspqsADGSWARHEVMNSGGAEYSRNDDIDSVaqmkaaeealqakekqkPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENSND
******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NRFRGVTLLFNE*****KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPT*********AVIQF****************RPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVL*******
***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VT*LFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVE********SKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYV*LH*****
***************************************************************************************************************************************************NGRENG**********************************************************************************************************************GRKL****************************************RHEVMNSGGAEYSRNDDIDSVAQMKAAE*************ELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENSND
********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHE****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
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MGRNLSNHSESPVRDQGGPSRRRSLSRKSPSRRERSPVLHRSSHRGSSPAREKERHSSRAKSPKRAQSQSPVSRSPSPRTRRLMRSRDERELGKVTEREQERNHSRKSDRGTHIGKSSSPSPRTRRLARARDEGDAERVTERDHERNNGRENGKGKLGERTRSPVSRSPSPRTKRLRRAHAEKDADKLTEKEHERNHSRTSDKEAHLPVSRSPSPHTKRLRRADAKVTERERENDHSRASDKDIHRERVSERETGSERKERRERDFEGDREGRKLGRNEASNQSSRSRRDRSTSPLDRPPRSRHRSPQSADGSWARHEVMNSGGAEYSRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENSND
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query507 2.2.26 [Sep-21-2011]
Q8W4D8314 FHA domain-containing pro yes no 0.583 0.942 0.637 2e-90
Q8TAD8396 Smad nuclear-interacting yes no 0.642 0.823 0.405 2e-57
Q5M9G6389 Smad nuclear interacting yes no 0.305 0.398 0.653 2e-57
Q8BIZ6383 Smad nuclear-interacting yes no 0.305 0.404 0.653 2e-57
Q54VU41505 Probable serine/threonine yes no 0.260 0.087 0.507 8e-33
Q8R3G1 351 Nuclear inhibitor of prot no no 0.246 0.356 0.35 6e-11
Q12972 351 Nuclear inhibitor of prot no no 0.224 0.324 0.349 7e-11
Q28147 351 Nuclear inhibitor of prot no no 0.224 0.324 0.349 7e-11
Q07930204 Pre-mRNA leakage protein yes no 0.254 0.632 0.333 6e-10
Q9BWU0 796 Kanadaptin OS=Homo sapien no no 0.236 0.150 0.341 6e-10
>sp|Q8W4D8|DDL_ARATH FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL PE=1 SV=1 Back     alignment and function desciption
 Score =  333 bits (854), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/312 (63%), Positives = 231/312 (74%), Gaps = 16/312 (5%)

Query: 208 PVSRSPSPHTKRLRRADAKVT---EREREND-HSRASDKDIHRERVSERETGSERKERRE 263
           P SRSPSP TKRLRRA  +      RERE+D   R       R+R   R+   ERK   E
Sbjct: 3   PSSRSPSPRTKRLRRARGEKEIGRSREREDDGREREKRNSRERDRDIGRDRDRERKGEGE 62

Query: 264 RDFEGDREGRKLGRNEASNQS---------SRSRRDRSTSPLDRPPRSRHRSPQSADGSW 314
           RD E   + R+ GR +   +          SR R +RSTSP DR  RS  RSP+ A  S 
Sbjct: 63  RDREVGDKRRRSGREDTEKRRRTRTDDERYSRGRHERSTSPSDRSHRSSRRSPERAIAS- 121

Query: 315 ARH-EVMNSGGAEYSRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVT 373
            RH E  N+ G     N + DSVA+M+A EEAL AK+K++PSFELSGKLA ETNR+RG+T
Sbjct: 122 -RHDEGSNARGGSEEPNVEEDSVARMRAVEEALAAKKKEEPSFELSGKLAEETNRYRGIT 180

Query: 374 LLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQ 433
           LLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSKQ
Sbjct: 181 LLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQ 240

Query: 434 HAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGN 493
           HAVIQ+R++EKE+PDGM+ K+V+PYIMDLGSTNKTY+N++PIEPQRYYELFEKDTIKFGN
Sbjct: 241 HAVIQYREMEKEKPDGMMGKQVKPYIMDLGSTNKTYINESPIEPQRYYELFEKDTIKFGN 300

Query: 494 SSREYVLLHENS 505
           SSREYVLLHENS
Sbjct: 301 SSREYVLLHENS 312
Involved in the microRNA (miRNA) and short interfering RNA (siRNA) biogenesis. May facilitate DCL1 to access or recognize primary miRNAs. Binds RNA non-specifically.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8TAD8|SNIP1_HUMAN Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1 Back     alignment and function description
>sp|Q5M9G6|SNIP1_RAT Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BIZ6|SNIP1_MOUSE Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1 SV=1 Back     alignment and function description
>sp|Q54VU4|Y8013_DICDI Probable serine/threonine-protein kinase DDB_G0280133 OS=Dictyostelium discoideum GN=DDB_G0280133 PE=3 SV=1 Back     alignment and function description
>sp|Q8R3G1|PP1R8_MOUSE Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus GN=Ppp1r8 PE=1 SV=1 Back     alignment and function description
>sp|Q12972|PP1R8_HUMAN Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8 PE=1 SV=2 Back     alignment and function description
>sp|Q28147|PP1R8_BOVIN Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus GN=PPP1R8 PE=1 SV=1 Back     alignment and function description
>sp|Q07930|PML1_YEAST Pre-mRNA leakage protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PML1 PE=1 SV=1 Back     alignment and function description
>sp|Q9BWU0|NADAP_HUMAN Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
449468482353 PREDICTED: FHA domain-containing protein 0.544 0.781 0.699 1e-106
297739294383 unnamed protein product [Vitis vinifera] 0.577 0.765 0.624 1e-100
359485662368 PREDICTED: FHA domain-containing protein 0.577 0.796 0.624 1e-100
297835002311 hypothetical protein ARALYDRAFT_479579 [ 0.581 0.948 0.641 1e-96
356530653392 PREDICTED: uncharacterized protein LOC10 0.524 0.678 0.671 1e-94
357459335326 FHA domain-containing protein DDL [Medic 0.538 0.837 0.675 4e-94
255564007372 nuclear inhibitor of protein phosphatase 0.372 0.508 0.836 5e-93
356569853384 PREDICTED: uncharacterized protein LOC10 0.603 0.796 0.569 2e-92
15232296314 smad nuclear-interacting protein 1 [Arab 0.583 0.942 0.637 1e-88
242090203492 hypothetical protein SORBIDRAFT_09g01716 0.678 0.699 0.493 8e-88
>gi|449468482|ref|XP_004151950.1| PREDICTED: FHA domain-containing protein DDL-like [Cucumis sativus] gi|449489984|ref|XP_004158476.1| PREDICTED: FHA domain-containing protein DDL-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/293 (69%), Positives = 226/293 (77%), Gaps = 17/293 (5%)

Query: 217 TKRLRRADAKVTERERENDH----SRASDKDIHRERVSERETGSERKERRERDFEGDREG 272
           TKRLRRA  K  E+  + DH     R SDK+ H+ERVS+RE G ERKER  R    D   
Sbjct: 72  TKRLRRAAEKAPEKSSDRDHERNRGRGSDKEAHQERVSDRELGGERKERSSRQEAKD--- 128

Query: 273 RKLGRNEASNQSSRSRRDRSTSPLDRPPRSRHRSPQSADGSWARHEVMNSGGAEYSRNDD 332
                     +SSRSR   S+SP +R  R+RHRSP     +    E  NS   E SR+DD
Sbjct: 129 ---------GKSSRSRHGNSSSPSERHQRNRHRSPSPQPDAKNHDEGRNSRRPE-SRSDD 178

Query: 333 IDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLY 392
            DSVA+MKAAE+AL+AK+K KPSFELSGKLAAETNR RG+TLLFNEPPDARKP VRWRLY
Sbjct: 179 DDSVAKMKAAEQALEAKQKDKPSFELSGKLAAETNRVRGITLLFNEPPDARKPDVRWRLY 238

Query: 393 VFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLS 452
           VFKAGE+L EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQ DG LS
Sbjct: 239 VFKAGEVLNEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQSDGTLS 298

Query: 453 KEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENS 505
           K VRPY+MDLGSTNKTY+ND  IEPQRYYELFEKDT++FGNSSREYVLLHE S
Sbjct: 299 KHVRPYLMDLGSTNKTYINDAAIEPQRYYELFEKDTVRFGNSSREYVLLHEKS 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739294|emb|CBI28945.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359485662|ref|XP_002273806.2| PREDICTED: FHA domain-containing protein DDL-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297835002|ref|XP_002885383.1| hypothetical protein ARALYDRAFT_479579 [Arabidopsis lyrata subsp. lyrata] gi|297331223|gb|EFH61642.1| hypothetical protein ARALYDRAFT_479579 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356530653|ref|XP_003533895.1| PREDICTED: uncharacterized protein LOC100812104 [Glycine max] Back     alignment and taxonomy information
>gi|357459335|ref|XP_003599948.1| FHA domain-containing protein DDL [Medicago truncatula] gi|355488996|gb|AES70199.1| FHA domain-containing protein DDL [Medicago truncatula] Back     alignment and taxonomy information
>gi|255564007|ref|XP_002523003.1| nuclear inhibitor of protein phosphatase-1, putative [Ricinus communis] gi|223537815|gb|EEF39433.1| nuclear inhibitor of protein phosphatase-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356569853|ref|XP_003553109.1| PREDICTED: uncharacterized protein LOC100780414 [Glycine max] Back     alignment and taxonomy information
>gi|15232296|ref|NP_188691.1| smad nuclear-interacting protein 1 [Arabidopsis thaliana] gi|75162460|sp|Q8W4D8.1|DDL_ARATH RecName: Full=FHA domain-containing protein DDL; AltName: Full=Protein DAWDLE gi|17065100|gb|AAL32704.1| Unknown protein [Arabidopsis thaliana] gi|23197594|gb|AAN15324.1| Unknown protein [Arabidopsis thaliana] gi|332642873|gb|AEE76394.1| smad nuclear-interacting protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242090203|ref|XP_002440934.1| hypothetical protein SORBIDRAFT_09g017160 [Sorghum bicolor] gi|241946219|gb|EES19364.1| hypothetical protein SORBIDRAFT_09g017160 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query507
TAIR|locus:2085740314 DDL "AT3G20550" [Arabidopsis t 0.376 0.608 0.723 2.8e-82
UNIPROTKB|F1P3G6373 SNIP1 "Uncharacterized protein 0.299 0.407 0.653 2.3e-58
UNIPROTKB|Q8TAD8396 SNIP1 "Smad nuclear-interactin 0.299 0.383 0.653 7.8e-58
MGI|MGI:2156003383 Snip1 "Smad nuclear interactin 0.299 0.396 0.653 1.3e-57
UNIPROTKB|E2R797397 SNIP1 "Uncharacterized protein 0.299 0.382 0.660 4.2e-57
RGD|1359268389 Snip1 "Smad nuclear interactin 0.299 0.390 0.653 6.9e-57
UNIPROTKB|E1BNB3399 SNIP1 "Uncharacterized protein 0.299 0.380 0.653 1.1e-56
UNIPROTKB|I3LQU1261 SNIP1 "Uncharacterized protein 0.299 0.582 0.653 2.6e-53
FB|FBgn0039943421 CG17168 [Drosophila melanogast 0.301 0.363 0.584 1.4e-52
WB|WBGene00016323299 C32E8.5 [Caenorhabditis elegan 0.284 0.481 0.6 1.6e-49
TAIR|locus:2085740 DDL "AT3G20550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 740 (265.6 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
 Identities = 139/192 (72%), Positives = 157/192 (81%)

Query:   315 ARH-EVMNSGGAEYSRNDDIDSVXXXXXXXXXXXXXXXXXPSFELSGKLAAETNRFRGVT 373
             +RH E  N+ G     N + DSV                 PSFELSGKLA ETNR+RG+T
Sbjct:   121 SRHDEGSNARGGSEEPNVEEDSVARMRAVEEALAAKKKEEPSFELSGKLAEETNRYRGIT 180

Query:   374 LLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQ 433
             LLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSKQ
Sbjct:   181 LLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQ 240

Query:   434 HAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGN 493
             HAVIQ+R++EKE+PDGM+ K+V+PYIMDLGSTNKTY+N++PIEPQRYYELFEKDTIKFGN
Sbjct:   241 HAVIQYREMEKEKPDGMMGKQVKPYIMDLGSTNKTYINESPIEPQRYYELFEKDTIKFGN 300

Query:   494 SSREYVLLHENS 505
             SSREYVLLHENS
Sbjct:   301 SSREYVLLHENS 312
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0008283 "cell proliferation" evidence=IMP
GO:0048638 "regulation of developmental growth" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0003723 "RNA binding" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP;IDA
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
UNIPROTKB|F1P3G6 SNIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TAD8 SNIP1 "Smad nuclear-interacting protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2156003 Snip1 "Smad nuclear interacting protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R797 SNIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1359268 Snip1 "Smad nuclear interacting protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNB3 SNIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQU1 SNIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0039943 CG17168 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00016323 C32E8.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.3__2280__AT3G20550.1
annotation not avaliable (311 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh1_pg.C_scaffold_1000116
AT1G01040 (1962 aa)
    • • 0.602
fgenesh2_kg.6__1789__AT4G08580.1
annotation not avaliable (435 aa)
   ••   0.439
fgenesh2_kg.8__2445__AT5G64270.1
annotation not avaliable (1264 aa)
   ••   0.438

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 6e-21
pfam0049867 pfam00498, FHA, FHA domain 4e-14
smart0024052 smart00240, FHA, Forkhead associated domain 1e-09
PRK12678 672 PRK12678, PRK12678, transcription termination fact 4e-06
PRK12678 672 PRK12678, PRK12678, transcription termination fact 2e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 4e-04
PRK12678672 PRK12678, PRK12678, transcription termination fact 0.001
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 0.001
PRK12678 672 PRK12678, PRK12678, transcription termination fact 0.002
TIGR01622 457 TIGR01622, SF-CC1, splicing factor, CC1-like famil 0.004
COG1716191 COG1716, COG1716, FOG: FHA domain [Signal transduc 0.004
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 87.4 bits (217), Expect = 6e-21
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 13/108 (12%)

Query: 388 RWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQP 447
             RL V           Y+     Y  GR+    DI  D PS S++HAVI++        
Sbjct: 1   VPRLVVLSGDA-SGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYD------- 52

Query: 448 DGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSS 495
                 +    ++DLGSTN T++N   + P     L + D I+ GN+S
Sbjct: 53  -----GDGGVVLIDLGSTNGTFVNGQRVSPGEPVRLRDGDVIRLGNTS 95

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family Back     alignment and domain information
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 507
KOG1882293 consensus Transcriptional regulator SNIP1, contain 100.0
KOG1881 793 consensus Anion exchanger adaptor protein Kanadapt 99.79
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.77
KOG1880 337 consensus Nuclear inhibitor of phosphatase-1 [Gene 99.65
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.59
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.56
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.45
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.44
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.24
COG3456 430 Predicted component of the type VI protein secreti 98.86
KOG0615 475 consensus Serine/threonine protein kinase Chk2 and 98.11
TIGR02500 410 type_III_yscD type III secretion apparatus protein 97.33
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 96.34
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 95.59
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 95.0
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 94.18
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 93.0
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-47  Score=373.79  Aligned_cols=265  Identities=51%  Similarity=0.783  Sum_probs=201.2

Q ss_pred             hhhccccCcCCcchhhhhhhhccccchhhhhhhhcCCCCcccccccccccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 010574          230 RERENDHSRASDKDIHRERVSERETGSERKERRERDFEGDREGRKLGRNEASNQSSRSRRDRSTSPLDRPPRSRHRSPQS  309 (507)
Q Consensus       230 r~r~~~~~~~~~~d~~r~~~~~r~~~~~r~~rr~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~p~~~~~r~~~~~~~~  309 (507)
                      ++|++-.|..-|++..+++   ..+..|..|.+.|.++.++++++.-+.+. .+..++...|..++. +.+|...+.+.+
T Consensus        26 ~er~~k~~~~r~~~~~~~r---~~k~rq~~e~~~R~~r~d~e~r~~~~~~~-~R~~r~~~~r~rg~s-r~rR~~~rrp~~  100 (293)
T KOG1882|consen   26 RERKNKASGRRDKSPRRKR---TVKVRQESEDRPRRGREDREHRRPSRQMF-RRRKRSDNTRHRGHS-RQRRTSKRRPSQ  100 (293)
T ss_pred             hhhhhccccccccCccccc---chhhhhhccccccccchhcccccchhhhh-hhhhcCccccccCcc-ccccccccCccc
Confidence            3444444444455555554   22344445555556666666544444332 233444444444443 222222222222


Q ss_pred             CccccccccccCCCCCcCCCCCCcchHHHhhHHHHHHhhhhccCCCccccccccccccccCCceecccCCCCCCCCCCce
Q 010574          310 ADGSWARHEVMNSGGAEYSRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRW  389 (507)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~dDSi~~~~~~eea~ee~~KekPnFe~SG~La~dtNtv~GVtLkysePpeAr~P~~~w  389 (507)
                      ..+..  ....|++..++.-|.  +.  .+..++++.+++.+++|+|+++|+|+.++|++.||+|+|++|++|.+|...|
T Consensus       101 ~~~~~--~d~~~~r~~e~~~nn--~~--k~~~~~k~~~~~dke~p~f~lsg~l~E~tn~~~gv~v~y~eppearkP~kRw  174 (293)
T KOG1882|consen  101 YIDIG--RDFSNARLRELESNN--GG--KEGIALKEVEPQDKEKPSFELSGALLEDTNRFRGVVVKYNEPPEARKPKKRW  174 (293)
T ss_pred             hhccc--ccccchhhhhhcccc--cC--CccccccccCchhccCCchhhchhhhhhhcceeeEEEEecCCchhcCchhhe
Confidence            22111  124566665555444  22  4455667777889999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccc
Q 010574          390 RLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTY  469 (507)
Q Consensus       390 rL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTF  469 (507)
                      .||+|++++.+ .+++|+.++||||||+..++||.|+||+||+|||||||+.+.++-++|++...+++|||||||+||||
T Consensus       175 rLy~fk~~e~l-~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTf  253 (293)
T KOG1882|consen  175 RLYPFKCYEVL-PVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTF  253 (293)
T ss_pred             ecccccCCccc-chheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcce
Confidence            99999999887 68999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             cCCeecCCCCeeecCCCCEEEEcCceEEEEEecCCCC
Q 010574          470 LNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHENSN  506 (507)
Q Consensus       470 VNGeRI~~~ryveL~dGDvIkFG~STreYVLl~e~s~  506 (507)
                      ||..+|+++.||+|..+|+|+||+++++|||+++++.
T Consensus       254 LNnk~IepqRYyEL~ekDvlkfgfs~rEyvllhe~s~  290 (293)
T KOG1882|consen  254 LNNKVIEPQRYYELREKDVLKFGFSSREYVLLHEISM  290 (293)
T ss_pred             ecCcccCchheeeeecCceeeeccchHHHHHHHhhhc
Confidence            9999999999999999999999999999999999853

>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
3vpy_A145 Crystal Structure Of Arabidopsis Ddl Fha Domain Len 2e-65
3elv_A205 Crystal Structure Of Full-Length Yeast Pml1p Length 2e-11
2jkd_A187 Structure Of The Yeast Pml1 Splicing Factor And Its 3e-11
2jpe_A140 Fha Domain Of Nipp1 Length = 140 1e-10
4h87_A130 Crystal Structure Of A Fha Domain Of Kanadaptin (Sl 3e-09
3els_A158 Crystal Structure Of Yeast Pml1p, Residues 51-204 L 6e-08
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain Length = 145 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (628), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 112/133 (84%), Positives = 123/133 (92%)
Query: 373 TLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSK 432
           TLLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSK
Sbjct: 1   TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSK 60
Query: 433 QHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFG 492
           QHAVIQ+R+ EKE+PDG   K+V+PYI DLGSTNKTY+N++PIEPQRYYELFEKDTIKFG
Sbjct: 61  QHAVIQYREXEKEKPDGXXGKQVKPYIXDLGSTNKTYINESPIEPQRYYELFEKDTIKFG 120
Query: 493 NSSREYVLLHENS 505
           NSSREYVLLHENS
Sbjct: 121 NSSREYVLLHENS 133
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p Length = 205 Back     alignment and structure
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its Integration Into The Res Complex Length = 187 Back     alignment and structure
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1 Length = 140 Back     alignment and structure
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap) From Homo Sapiens At 1.55 A Resolution Length = 130 Back     alignment and structure
>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204 Length = 158 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query507
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 2e-48
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 6e-43
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 2e-40
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 1e-16
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 3e-12
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 1e-10
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 3e-10
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 4e-10
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 5e-10
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 7e-10
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 2e-09
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 4e-09
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 9e-09
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 2e-07
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 2e-07
3po8_A100 RV0020C protein, putative uncharacterized protein 3e-07
2xt9_B115 Putative signal transduction protein GARA; lyase-s 6e-07
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 8e-07
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 1e-05
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 4e-05
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 7e-05
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 1e-04
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 2e-04
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
 Score =  162 bits (412), Expect = 2e-48
 Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 356 FELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFG 415
                 +AA  N    +  LF+ P  A KP     L V K  +++ E L I  +  YLFG
Sbjct: 3   LGSPNSMAAAVNSGSSL-PLFDCPTWAGKPPPGLHLDVVKGDKLI-EKLIIDEKKYYLFG 60

Query: 416 RERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPI 475
           R   + D   DH SCS+ HA + + +  K           R +++DL ST+ T+L    +
Sbjct: 61  RNPDLCDFTIDHQSCSRVHAALVYHKHLK-----------RVFLIDLNSTHGTFLGHIRL 109

Query: 476 EPQRYYELFEKDTIKFGNSSREYVLLHE 503
           EP +  ++    T+ FG S+R Y L  +
Sbjct: 110 EPHKPQQIPIDSTVSFGASTRAYTLREK 137
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Length = 325 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 100.0
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 100.0
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.96
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.94
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.87
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.86
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.84
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.83
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.83
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.83
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.83
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.83
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.82
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.81
3po8_A100 RV0020C protein, putative uncharacterized protein 99.81
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.8
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.8
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.8
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.78
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.78
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.77
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.75
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.75
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.74
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.73
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.72
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.71
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.69
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.61
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.37
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.37
4a0e_A123 YSCD, type III secretion protein; transport protei 99.28
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.21
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.15
1wv3_A238 Similar to DNA segregation ATPase and related prot 99.02
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.02
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.94
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.85
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
Probab=100.00  E-value=2.4e-36  Score=288.45  Aligned_cols=137  Identities=37%  Similarity=0.537  Sum_probs=97.1

Q ss_pred             hccCCCccccccccccccccCCceecccCCCCCCCCCC-------------ceEEEEEeCCee---ecceEEecccceee
Q 010574          350 EKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSV-------------RWRLYVFKAGEM---LKEPLYIHRQSCYL  413 (507)
Q Consensus       350 ~KekPnFe~SG~La~dtNtv~GVtLkysePpeAr~P~~-------------~wrL~VfKgGe~---l~e~i~L~~qs~yl  413 (507)
                      .+++|||++||+|++++|+++||+|+|++|+||.+|..             .|.|+|||+|..   ..+.|.|..+++|+
T Consensus        27 ~~~~pnf~~sg~L~~~~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~~~s~y~  106 (205)
T 3elv_A           27 IDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYL  106 (205)
T ss_dssp             -------------------------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECSSCSEEE
T ss_pred             ccccCCCcccccchhhhcccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEecCCCcee
Confidence            36999999999999999999999999999999999853             477999998762   23579999999999


Q ss_pred             ecccC--------------ccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEeCCCCCccccCCeecCCCC
Q 010574          414 FGRER--------------RVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQR  479 (507)
Q Consensus       414 IGRdr--------------~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiDLgSTNGTFVNGeRI~~~r  479 (507)
                      |||++              ..|||+|+|++||++||+|++....         +...|||+||+|+|||||||++|.+..
T Consensus       107 IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~---------~~~~~~l~DLgStNGTfVNG~rI~~~~  177 (205)
T 3elv_A          107 VGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR---------GILKCYVMDLDSSNGTCLNNVVIPGAR  177 (205)
T ss_dssp             EEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEET---------TEEEEEEEECSCSSCCEETTEECCBTS
T ss_pred             ecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCC---------CceeEEEEeCCCCCCCeECCEECCCCc
Confidence            99983              3699999999999999999987521         124699999999999999999999999


Q ss_pred             eeecCCCCEEEEcCce
Q 010574          480 YYELFEKDTIKFGNSS  495 (507)
Q Consensus       480 yveL~dGDvIkFG~ST  495 (507)
                      +++|.+||+|+||.++
T Consensus       178 ~~~L~~GD~I~fG~s~  193 (205)
T 3elv_A          178 YIELRSGDVLTLSEFE  193 (205)
T ss_dssp             CEECCTTCEEESSSSG
T ss_pred             eeECCCCCEEEECCCC
Confidence            9999999999999875
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 507
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 6e-15
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 1e-12
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 5e-11
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 2e-10
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 1e-09
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 4e-09
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 2e-05
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 3e-05
d2brfa1101 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosph 4e-04
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 68.9 bits (168), Expect = 6e-15
 Identities = 30/125 (24%), Positives = 42/125 (33%), Gaps = 14/125 (11%)

Query: 379 PPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQ 438
              +   +   RL   K G    + L     S    GR  R  +I       S +H  I+
Sbjct: 3   SGSSGMVTPSLRLVFVK-GPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIE 61

Query: 439 FRQVEKEQPDGMLSKEVRPYIMDLGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREY 498
                               I DLGS+N T LN N ++P+    L + D IK G  +   
Sbjct: 62  SD-------------SGNWVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSIL 108

Query: 499 VLLHE 503
           V    
Sbjct: 109 VNFVS 113
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query507
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.88
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.83
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.81
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.78
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.77
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.76
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.73
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.73
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.73
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.67
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.64
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=3.1e-23  Score=179.00  Aligned_cols=109  Identities=27%  Similarity=0.268  Sum_probs=90.9

Q ss_pred             CCCCCCceEEEEEeCCeeecceEEecccceeeecccCccCceecCCCCcCccceEEEEecccccCCCCCCCCcceeEEEe
Q 010574          382 ARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDGMLSKEVRPYIMD  461 (507)
Q Consensus       382 Ar~P~~~wrL~VfKgGe~l~e~i~L~~qs~ylIGRdr~~cDIvLdhPSVSRqHAvIqfR~~~~~~~dGd~~~~~r~yLiD  461 (507)
                      +...++.+.|.+..+.... ..|.|.....|+|||+...|||+|+++.||++||.|.+..             ..|||+|
T Consensus         6 ~g~~~p~l~L~v~~Gp~~g-~~~~l~~~~~~~iGR~~~~~di~l~d~~VSr~Ha~i~~~~-------------~~~~i~D   71 (118)
T d1uhta_           6 SGMVTPSLRLVFVKGPREG-DALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-------------GNWVIQD   71 (118)
T ss_dssp             CCCCSCEEEEEESSSTTTT-CBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-------------SSEEEEC
T ss_pred             CCCCCCcEEEEEEeCCCCC-cEEEeCCCCEEEECCCCcCCeEEeCccCcchheeEEEEEC-------------CEEEEEE
Confidence            3344456788888765433 4577776778999997558999999999999999999864             4599999


Q ss_pred             CCCCCccccCCeecCCCCeeecCCCCEEEEcCceEEEEEecCC
Q 010574          462 LGSTNKTYLNDNPIEPQRYYELFEKDTIKFGNSSREYVLLHEN  504 (507)
Q Consensus       462 LgSTNGTFVNGeRI~~~ryveL~dGDvIkFG~STreYVLl~e~  504 (507)
                      |+|+|||||||++|.+..+++|.+||+|.||.+++.|+.+.+.
T Consensus        72 l~S~nGT~vng~~l~~~~~~~L~~Gd~i~lG~~~~~~v~~~~~  114 (118)
T d1uhta_          72 LGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVSG  114 (118)
T ss_dssp             CCCSSCCEESSSBCCTTCEEECCTTEEEEETTTEEEEEEEECS
T ss_pred             CCCcceeEECCEEcCCCcEEECCCCCEEEECCEEEEEEEecCC
Confidence            9999999999999998889999999999999999888766543
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure