Citrus Sinensis ID: 010589
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 506 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SX20 | 596 | Probable nitrite transpor | yes | no | 0.954 | 0.810 | 0.576 | 1e-162 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.895 | 0.794 | 0.432 | 1e-110 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.897 | 0.776 | 0.426 | 1e-110 | |
| Q9LFB8 | 570 | Peptide transporter PTR5 | no | no | 0.893 | 0.792 | 0.423 | 1e-108 | |
| Q93Z20 | 590 | Probable peptide/nitrate | no | no | 0.869 | 0.745 | 0.425 | 1e-108 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.932 | 0.761 | 0.423 | 1e-105 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.920 | 0.788 | 0.369 | 1e-95 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.916 | 0.790 | 0.402 | 3e-93 | |
| Q84WG0 | 545 | Probable peptide/nitrate | no | no | 0.822 | 0.763 | 0.387 | 2e-92 | |
| Q9M817 | 607 | Probable peptide transpor | no | no | 0.938 | 0.782 | 0.354 | 7e-91 |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 571 bits (1472), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/491 (57%), Positives = 362/491 (73%), Gaps = 8/491 (1%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G+ +T+SA++P LRPPPC ++ C A QL +LY++LLL +LGSGGIRPCVVAF AD
Sbjct: 108 GMTLLTISAIIPTLRPPPCKGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGAD 167
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D + WN+FNWYYFCMG A L A+TV+V+IQDNVGWGLG GIP + M +SV+
Sbjct: 168 QFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVI 227
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AFV G LY L P GSP TRL QV VAAF+KRK + DP LLY N E+D+ IS+ G L
Sbjct: 228 AFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKL 287
Query: 184 VHTNQFKWLDKAATVTEGETTNSSP---PNLWRLATVHRVEELKSIIRMLPVWAAGILLV 240
HT +LDKAA VTE + N P PN WRL+TVHRVEELKS+IRM P+ A+GILL+
Sbjct: 288 THTKHMSFLDKAAIVTEED--NLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLI 345
Query: 241 TASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTG 300
TA + Q +F++QQA+TMN HLT+SF+IP S+S+F + ML + Y+R+FV +AR+FTG
Sbjct: 346 TAYAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTG 405
Query: 301 NPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQY 360
GI+ L RMG+GF I+I+AT+V+ FVE+KRK VA H LLD P I+PIS WL+PQY
Sbjct: 406 LERGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQY 465
Query: 361 CLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKN 420
LHGVAE FMS+GHLEF YDQ+PESMRSTA AL+W+AIS+GNY+ TL+VTLVHK++ +
Sbjct: 466 GLHGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPD 525
Query: 421 --NWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIE 478
NWLPD NLNRGRLE++YWL++ +Q +NLVYY+ CA YTYKP+ +V +D E
Sbjct: 526 GSNWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKPV-QVHHSKEDSSPVKE 584
Query: 479 DGEIPYKRLND 489
+ ++ + L D
Sbjct: 585 ELQLSNRSLVD 595
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May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/460 (43%), Positives = 290/460 (63%), Gaps = 7/460 (1%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G+ +TLSA +PGL+P C C S Q V +++L + +LG+GGI+PCV +F AD
Sbjct: 109 GMTLLTLSASVPGLKPGNC-NADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGAD 166
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D +K +FFNW+YF + + L A TV+V+IQ NVGWG GFG+P + MV++V
Sbjct: 167 QFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVC 226
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
F FGS Y +PGGSPLTR+ QVIVAAF+K VPED LL+ + +S I L
Sbjct: 227 FFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKL 286
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
VHT+ K+ DKAA ++ ++ N WRL +V +VEELKSII +LPVWA GI+ T
Sbjct: 287 VHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVY 346
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
S + + Q TM+ H+ +F+IP ASLS+F +++L +Y++ +P+AR+FT N
Sbjct: 347 SQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNER 406
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
G + LQRMG+G ++I A I + +E+ R H+ D + I +S+FW +PQY L
Sbjct: 407 GFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLI 464
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT--GSKNN 421
G AEVF +G LEF YDQ+P++MRS AL +++GNY+ T++VT+V K T K
Sbjct: 465 GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPG 524
Query: 422 WLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461
W+PD NLNRG L+++++L++ + +N + Y+ + Y YK
Sbjct: 525 WIPD-NLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/460 (42%), Positives = 297/460 (64%), Gaps = 6/460 (1%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G+ A+TLSA +P L+P C C A+ Q + + L L +LG+GGI+PCV +F AD
Sbjct: 126 GMSALTLSASVPALKPAEC-IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGAD 184
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D + RK +FFNW+YF + I L + +++V+IQ+N GWGLGFGIP + M +++
Sbjct: 185 QFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIA 244
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
+F FG+PLY KPGGSP+TR++QV+VA+F+K VPED LLY + +S I+ +
Sbjct: 245 SFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKI 304
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
HT+ ++LDKAA ++E E+ + N WRL TV +VEELK +IRM P+WA+GI+
Sbjct: 305 EHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVY 364
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
+ + +QQ R MN + SF++PPA+L F +++I + LY+R VP+AR+FTG
Sbjct: 365 AQMSTMFVQQGRAMNCKI-GSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDK 423
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
G + +QRMG+G +++L ++ VEI R +A + L++ A +PISV W +PQY +
Sbjct: 424 GFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVES-GAPVPISVLWQIPQYFIL 482
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT--GSKNN 421
G AEVF +G LEF YDQSP++MRS AL + ++GNY+ +L++TLV +T +
Sbjct: 483 GAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEG 542
Query: 422 WLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461
W+ D NLN G L++++WL++G+ ++N+ Y A Y K
Sbjct: 543 WISD-NLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/460 (42%), Positives = 293/460 (63%), Gaps = 8/460 (1%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G+ +T+SA +PGL P C + + C +G Q + +I+L L +LG+GGI+PCV +F AD
Sbjct: 110 GMTLLTISASVPGL-TPTC-SGETCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGAD 166
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D K +FFNW+YF + + + A +V+V+IQ NVGWG G G+P + M ++V+
Sbjct: 167 QFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVV 226
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
F GS Y KPGGSPLTR+ QVIVA+ +K K +PED LLY N + +S I L
Sbjct: 227 FFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKL 286
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
HT + DKAA TE + ++ + W+L TV +VEELK++IR+LP+WA GI+ +
Sbjct: 287 EHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVY 346
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
S + + Q T++ H+ +FKIP ASLS+F L++L +Y+++ VP AR++TG+
Sbjct: 347 SQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHER 406
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
G + LQR+G+G I+I + + + +E+ R H+L ++ IP+++FW VPQY L
Sbjct: 407 GFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEET--IPMTIFWQVPQYFLV 464
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT--GSKNN 421
G AEVF +G LEF YDQ+P++MRS AL AI+ GNY+ T +VTLV K T G +
Sbjct: 465 GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPG 524
Query: 422 WLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461
W+ +NLN G L++++WL++G+ +N + Y+ A +YTYK
Sbjct: 525 WIA-KNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYK 563
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Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/456 (42%), Positives = 300/456 (65%), Gaps = 16/456 (3%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKN--CREASGLQLGVLYISLLLSSLGSGGIRPCVVAFA 61
G+ +TLSA LP L+P C C A+ +Q V + L L +LG+GGI+PCV +F
Sbjct: 137 GMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 62 ADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMS 121
ADQ D RK +FFNW+YF + I + + T++V++Q+NVGWGLGF IP + M +S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 122 VLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHG 181
+ +F G+PLY KPGGSP+TR+ QV+VAA++K K +PED LY E +S+I+
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR 316
Query: 182 TLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVT 241
+ HT+ +K+LDKAA ++E E+ + + N W+L TV +VEE+K++IRM P+WA+GI+
Sbjct: 317 KIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSV 376
Query: 242 ASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGN 301
S + +QQ R+MN + SF+IPPAS +F L +LI + +Y+R VP RRFTG
Sbjct: 377 LYSQISTLFVQQGRSMN-RIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGI 435
Query: 302 PAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYC 361
P G++ LQRMG+G +++L+ ++ VE R ++A + + +S+FW +PQY
Sbjct: 436 PKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQD---------FVAMSIFWQIPQYI 486
Query: 362 LHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT--GSK 419
L G+AEVF +G +EF YD+SP++MRS AL + ++G+Y+ +L++TLV +T G K
Sbjct: 487 LMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGK 546
Query: 420 NNWLPDRNLNRGRLEHYYWLVSGIQVINL-VYYVIC 454
+ W+PD +LN+G L++++WL+ + ++N+ VY +IC
Sbjct: 547 DGWVPD-DLNKGHLDYFFWLLVSLGLVNIPVYALIC 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 209/493 (42%), Positives = 301/493 (61%), Gaps = 21/493 (4%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQK--NCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFA 61
GL+ ITL+A P L P C +Q +C + LQ+GVL + L S+GSGGIRPC + F
Sbjct: 136 GLITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFG 195
Query: 62 ADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMS 121
DQ D R +FFNWYY + + TVVVYIQD V W +GF IP M ++
Sbjct: 196 VDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALA 255
Query: 122 VLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVP--EDPRLLYRNGELDSVISV 179
V+ F G YV +KP GS + + QVIVAA KKRK +P +D + Y + + S SV
Sbjct: 256 VVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKS--SV 313
Query: 180 HGTLVHTNQFKWLDKAATVTEGETTNSSPP-NLWRLATVHRVEELKSIIRMLPVWAAGIL 238
L +NQF+ LDKAA V EG+ T PP + WRL +V VEE+K +IR++P+W+AGI+
Sbjct: 314 LSKLHRSNQFRCLDKAAVVIEGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGII 373
Query: 239 LVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRF 298
+ A + Q +FT+ QA M+ +L F+IP SLS+ +LT+ I L Y+R+FVP RR
Sbjct: 374 SLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRI 433
Query: 299 TGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVP 358
TG+ +GI+ LQR+G G I + IV+ VE R+ + N DP + P+SVFWL P
Sbjct: 434 TGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSINA---GDPTGMTPMSVFWLSP 490
Query: 359 QYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGS 418
Q L G+ E F +G +EF Q PE MRS A +L+ ++ + +Y+ + +VT+VHK++G
Sbjct: 491 QLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGG 550
Query: 419 KN--NWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK---PLEEVCEDDKDE 473
+ +WL ++NLN G+L+++Y+L++ + V+NLVY+ CA Y YK P+E D +E
Sbjct: 551 HDRPDWL-NKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYKVGLPIE-----DFEE 604
Query: 474 DKKIEDGEIPYKR 486
DK +D E+ K+
Sbjct: 605 DKSSDDVEMTSKK 617
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 182/493 (36%), Positives = 299/493 (60%), Gaps = 27/493 (5%)
Query: 4 GLVAITLSAVLPGLRPPPC--PTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFA 61
G+V + L+A+LP ++P PC NC A+ QL +LY + L S+GSGGIRPC +AF
Sbjct: 108 GMVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFG 167
Query: 62 ADQIDMRKATVANRKW-NFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVM 120
ADQ+D ++ R +FF WYY +A L A TV+VYIQD++GW +GFGIPAI M++
Sbjct: 168 ADQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLL 227
Query: 121 SVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPE--DPRLLY---RNGELDS 175
+ FVF SPLYVK S T L QV+ AA+ KR +P+ D R Y ++ EL +
Sbjct: 228 AGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKA 287
Query: 176 VISVHGTLVHTNQFKWLDKAATVT---EGETTNSSPPNLWRLATVHRVEELKSIIRMLPV 232
+++ ++L+KA ++ E ++ N WRL T +VE+LK++++++PV
Sbjct: 288 ---------PSDKLRFLNKACAISNRDEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPV 338
Query: 233 WAAGILLVTASSHQHSFTIQQARTMNTHLTH--SFKIPPASLSIFGILTMLIGLALYERI 290
W+ GI++ + + Q+SF + QA++M+ L+ +F+IP S +F I+ ++ + LY+R
Sbjct: 339 WSTGIMM-SINVSQNSFQLLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRA 397
Query: 291 FVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350
+P+A + G P ++ RMG+G I+ LA VS+ VE R+K A + L +D + +
Sbjct: 398 ILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVS 457
Query: 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVT 410
IS WLVPQY LHG+AE +G EF Y + P+SM S A +L+ + +++ N + ++++
Sbjct: 458 ISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILN 517
Query: 411 LVHKYTGSKN-NWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCED 469
V + N +W+ D N+N+G ++YYW+++ + +N++YYV+C+W +Y P + +
Sbjct: 518 AVKNSSKQGNVSWIED-NINKGHYDYYYWVLAILSFVNVIYYVVCSW--SYGPTVDQVRN 574
Query: 470 DKDEDKKIEDGEI 482
DK + E+ E+
Sbjct: 575 DKVNGMRKEEEEV 587
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 194/482 (40%), Positives = 289/482 (59%), Gaps = 18/482 (3%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKN--CREASGLQLGVLYISLLLSSLGSGGIRPCVVAFA 61
G VA+ L+AV+ L P C + C S Q+ L +++L +G+GGIRPC + F
Sbjct: 104 GSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFG 163
Query: 62 ADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMS 121
ADQ D + +FFNWY+F A + +LT++VY+Q NV W +G IPAI M++
Sbjct: 164 ADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLG 223
Query: 122 VLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHG 181
+ F GS LYVK+K GSP+ +T+VIV A KKR+ + P P LY D S G
Sbjct: 224 CIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRR-LKPVGPNELYNYIASDFKNSKLG 282
Query: 182 TLVHTNQFKWLDKAATVTEGETTNS--SPPNLWRLATVHRVEELKSIIRMLPVWAAGILL 239
HT QF++LDK+A T+ + N SP + W+L ++ +VEE+K +IR+LPVW + L
Sbjct: 283 ---HTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALF 339
Query: 240 VTASSHQHSFTIQQARTMNTHLT-HSFKIPPASLSIFGILTMLIGLALYERIFVPIARRF 298
A Q ++TI Q+ + L SF+IP S ++F +L M I + +Y+R+ VP R++
Sbjct: 340 YLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKY 399
Query: 299 TGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLD-DPK--AIIPISVFW 355
TG GI+ LQR+G G + I + +VS+ VE R+KVA L P+ AI +S W
Sbjct: 400 TGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMW 459
Query: 356 LVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKY 415
L+PQ L G+A+ VG +EF Y Q PE+MRS A +LY+ I + +Y+ T +++ VH
Sbjct: 460 LIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDT 519
Query: 416 TG--SKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDE 473
T S +WLP+ +LN+GRLE++Y+LV+G+ +NL Y+++ + +Y YK +V DKD
Sbjct: 520 TEGFSGGSWLPE-DLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWYRYK---DVVAKDKDM 575
Query: 474 DK 475
DK
Sbjct: 576 DK 577
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/457 (38%), Positives = 277/457 (60%), Gaps = 41/457 (8%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G+VA+TLSA +PGL+P C C A+ +Q VL+ L L +LG+GGI+PCV +F AD
Sbjct: 127 GMVALTLSASVPGLKPAEC-IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGAD 185
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D + RK +FFNW+YF + I + TV+V+IQ+N GW LGF IP + M ++ +
Sbjct: 186 QFDKTDPSERVRKASFFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATM 245
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
+F FG+PLY KP GSP+T + QV+VAA++K VPED
Sbjct: 246 SFFFGTPLYRFQKPRGSPITSVCQVLVAAYRKSNLKVPED-------------------- 285
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
+ EG+ N++P W+L TV +VEE+K ++R++P+WA+GI+
Sbjct: 286 -------------STDEGDA-NTNP---WKLCTVTQVEEVKILLRLVPIWASGIIFSVLH 328
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
S ++ +QQ R M + F+IPPA+L +F ++LI + +Y+R+ VP+ RRFTG
Sbjct: 329 SQIYTLFVQQGRCMKRTIGL-FEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAK 387
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
G + LQRMG+G +++L+ ++ VE R ++A + L++ I+P+++FW +PQY L
Sbjct: 388 GFTELQRMGIGLFVSVLSLTFAAIVETVRLQLARDLDLVESGD-IVPLNIFWQIPQYFLM 446
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWL 423
G A VF VG +EF Y+QSP+SMRS A + ++GNY+ +L++TLV Y K+ W+
Sbjct: 447 GTAGVFFFVGRIEFFYEQSPDSMRSLCSAWALLTTTLGNYLSSLIITLV-AYLSGKDCWI 505
Query: 424 PDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460
P N+N G L++++WL+ + +N+ +V + YT+
Sbjct: 506 PSDNINNGHLDYFFWLLVSLGSVNIPVFVFFSVKYTH 542
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 179/505 (35%), Positives = 301/505 (59%), Gaps = 30/505 (5%)
Query: 4 GLVAITLSAVLPGLRPPPC-PTQ--KNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAF 60
G+V + L+A+LP ++P PC PT +C ++ QL +LY + L S+GSGGIRPC +AF
Sbjct: 106 GMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAF 165
Query: 61 AADQIDMRKATVANRKW-NFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMV 119
ADQ+D ++ R +FF WYY +A L A T +VYIQ+++GW +GFG+PA+ M+
Sbjct: 166 GADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLML 225
Query: 120 MSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISV 179
++ L F+ SPLYV S T L Q IVAA+KKRK +P+ + D +
Sbjct: 226 IAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPD------HHDSFDCYYHM 279
Query: 180 HGTLVH--TNQFKWLDKAATVTEGET---TNSSPPNLWRLATVHRVEELKSIIRMLPVWA 234
+ + + + ++L+KA ++ E ++ N WRL T +VEELK++I+++P+W+
Sbjct: 280 KDSEIKAPSQKLRFLNKACLISNREEEIGSDGFALNPWRLCTTDKVEELKALIKVIPIWS 339
Query: 235 AGILLVTASSHQHSFTIQQARTMNTHLTH---SFKIPPASLSIFGILTMLIGLALYERIF 291
GI++ + ++ Q SF + QA +M+ L+ SF++P S +F I+ + + + LY+R
Sbjct: 340 TGIMM-SINTSQSSFQLLQATSMDRRLSRHGSSFQVPAGSFGMFTIIALALWVILYDRAV 398
Query: 292 VPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPI 351
+P+A + G P +S RMG+G ++ LA +S+ VE R+K A + ++ A++ I
Sbjct: 399 IPLASKIRGRPFRLSVKLRMGLGLFMSFLAMAISAMVESFRRKKAISQGYANNSNAVVDI 458
Query: 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTL 411
S WLVPQY LHG+AE ++G EF Y + P+SM S A +L+ + +++ + + ++V+
Sbjct: 459 SAMWLVPQYVLHGLAEALTAIGQTEFFYTEFPKSMSSIAASLFGLGMAVASLLASVVLNA 518
Query: 412 VHKYTG--SKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCED 469
V++ T K +W+ D N+N+G +YYW+++ + IN++YYVIC+W +Y PL + +
Sbjct: 519 VNELTSRNGKESWVSD-NINKGHYNYYYWVLAIMSFINVIYYVICSW--SYGPLVDQVRN 575
Query: 470 DKDEDKKIEDGEIPYKRLNDAIGDG 494
+ + E+ L D +G G
Sbjct: 576 GRVNGVREEE------ELIDIVGKG 594
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 506 | ||||||
| 255552447 | 621 | nitrate transporter, putative [Ricinus c | 0.984 | 0.801 | 0.761 | 0.0 | |
| 359481440 | 603 | PREDICTED: probable nitrite transporter | 0.978 | 0.820 | 0.739 | 0.0 | |
| 147864199 | 596 | hypothetical protein VITISV_039680 [Viti | 0.978 | 0.830 | 0.739 | 0.0 | |
| 224089917 | 614 | predicted protein [Populus trichocarpa] | 0.984 | 0.811 | 0.729 | 0.0 | |
| 297741689 | 568 | unnamed protein product [Vitis vinifera] | 0.922 | 0.822 | 0.767 | 0.0 | |
| 449437698 | 604 | PREDICTED: probable nitrite transporter | 0.952 | 0.798 | 0.756 | 0.0 | |
| 449517928 | 604 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.952 | 0.798 | 0.754 | 0.0 | |
| 356504645 | 610 | PREDICTED: probable nitrite transporter | 0.970 | 0.804 | 0.682 | 0.0 | |
| 356571886 | 610 | PREDICTED: probable nitrite transporter | 0.954 | 0.791 | 0.683 | 0.0 | |
| 357509215 | 613 | Peptide transporter PTR5 [Medicago trunc | 0.962 | 0.794 | 0.696 | 0.0 |
| >gi|255552447|ref|XP_002517267.1| nitrate transporter, putative [Ricinus communis] gi|223543530|gb|EEF45060.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/503 (76%), Positives = 440/503 (87%), Gaps = 5/503 (0%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G+++IT+SAVLP LRPPPCPTQ NC+EAS LQL VLYISLLL+S G+GGIRPCVV FAAD
Sbjct: 121 GMISITISAVLPSLRPPPCPTQLNCQEASTLQLWVLYISLLLTSFGTGGIRPCVVTFAAD 180
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
QIDM K++V +R WNFFNWYYF MG+ATLTALTVVVYIQD+VGWG G GIP I M +S++
Sbjct: 181 QIDMTKSSVNSRGWNFFNWYYFSMGMATLTALTVVVYIQDDVGWGWGLGIPTIAMALSIV 240
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AFVFGS LYVKLKPGGSPL RL QVIVAAFKKRK ++P+D LLY+N ELD+ ISV G L
Sbjct: 241 AFVFGSRLYVKLKPGGSPLVRLAQVIVAAFKKRKIVMPDDRGLLYQNKELDADISVTGRL 300
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
+HTNQFKWLDKAA + EGE + PNLWRLATVHRVEELKSIIRMLP+WAAGILLVTAS
Sbjct: 301 LHTNQFKWLDKAAVIAEGEQNDKKTPNLWRLATVHRVEELKSIIRMLPIWAAGILLVTAS 360
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
SH HSF IQQAR+M+ HL+HSF+IPPASLSIF ILTML GL +YER+FVP ARRFTGNP+
Sbjct: 361 SHLHSFVIQQARSMDRHLSHSFEIPPASLSIFSILTMLTGLVVYERLFVPFARRFTGNPS 420
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
GI+CLQRMG+GF +NI+ATIVS+ VE KRK AA+H+LLDDP+AIIPISVFWLVPQ+CLH
Sbjct: 421 GITCLQRMGIGFFVNIIATIVSALVESKRKAAAAHHNLLDDPQAIIPISVFWLVPQFCLH 480
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWL 423
GVAEVFMSVGHLEFLYDQSPESMRSTA ALYWIAIS+GNYIGT +VTLVH YTG +NNWL
Sbjct: 481 GVAEVFMSVGHLEFLYDQSPESMRSTAAALYWIAISIGNYIGTGLVTLVHDYTGRENNWL 540
Query: 424 PDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIEDGEIP 483
PDRNLNRGRL++YYWLV+GIQV+NLVYY++CAW YTYKPLEEV + +ED +I + EIP
Sbjct: 541 PDRNLNRGRLDYYYWLVTGIQVVNLVYYLVCAWLYTYKPLEEVKD---EEDAEITNNEIP 597
Query: 484 YKRLNDAIGDGNGDIELVRNATV 506
YKRL DA +G+ ++EL RN V
Sbjct: 598 YKRLADA--NGDKEVELARNDGV 618
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481440|ref|XP_002277986.2| PREDICTED: probable nitrite transporter At1g68570 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/503 (73%), Positives = 431/503 (85%), Gaps = 8/503 (1%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
GLV+IT+SAVLP LRPPPCPT++NC+EAS LQL +LYISLLL+SLG+GGIRPCVV FAAD
Sbjct: 106 GLVSITISAVLPSLRPPPCPTKENCKEASTLQLCILYISLLLTSLGTGGIRPCVVTFAAD 165
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q DM K+ VA+R WNFFNWYYF MG+ATL+ALT+VVYIQDNVGWG G G+P I M +S++
Sbjct: 166 QFDMSKSKVASRSWNFFNWYYFSMGLATLSALTIVVYIQDNVGWGWGLGLPTIAMALSII 225
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AF+ GSPLY KLKPGGSPL RL QVIVAA KKRKA+ P DP LLY N ELD+ ISV+G L
Sbjct: 226 AFLVGSPLYKKLKPGGSPLVRLAQVIVAATKKRKAVAPADPSLLYENKELDATISVNGRL 285
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
+HTNQFKW DKAA VT+ E T+ +PPNLWRLATVHRVEELKSI+RMLP+WAAGIL VT+S
Sbjct: 286 LHTNQFKWFDKAAIVTDAEATSLNPPNLWRLATVHRVEELKSIVRMLPIWAAGILHVTSS 345
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
SHQHSFTIQQARTM+ HL+ SF+IPPASLSIF +LT+LIG+ LYER FVP+ARRFT NP+
Sbjct: 346 SHQHSFTIQQARTMDRHLSPSFQIPPASLSIFSVLTVLIGIVLYERFFVPLARRFTRNPS 405
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
GI+ LQRMG+GF +NILATIV+SFVEIKRK +AANH+LLD P+AIIPISVFWLVPQ+ LH
Sbjct: 406 GITSLQRMGIGFMVNILATIVASFVEIKRKAIAANHNLLDKPRAIIPISVFWLVPQFALH 465
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWL 423
GVAEVFMSVGHLEFLYDQSPESMRSTA ALYWIAI++GNY+GTL+VTLVHKYTG NWL
Sbjct: 466 GVAEVFMSVGHLEFLYDQSPESMRSTAAALYWIAIAIGNYLGTLLVTLVHKYTGHSRNWL 525
Query: 424 PDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIEDGEIP 483
PDRNLNRGRLE+YYWLVSGIQV+NL+YYV CAW YT+KP+EEV + D + G
Sbjct: 526 PDRNLNRGRLEYYYWLVSGIQVVNLIYYVTCAWLYTHKPVEEVGDSMDKNDVDLARGR-- 583
Query: 484 YKRLNDAIGDGNGDIELVRNATV 506
ND G+ +GD+EL + TV
Sbjct: 584 ----ND--GNVDGDVELAKTGTV 600
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147864199|emb|CAN83024.1| hypothetical protein VITISV_039680 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/503 (73%), Positives = 431/503 (85%), Gaps = 8/503 (1%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
GLV+IT+SAVLP LRPPPCPT++NC+EAS LQL +LYISLLL+SLG+GGIRPCVV FAAD
Sbjct: 99 GLVSITISAVLPSLRPPPCPTKENCKEASTLQLCILYISLLLTSLGTGGIRPCVVTFAAD 158
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q DM K+ VA+R WNFFNWYYF MG+ATL+ALT+VVYIQDNVGWG G G+P I M +S++
Sbjct: 159 QFDMSKSKVASRSWNFFNWYYFSMGLATLSALTIVVYIQDNVGWGWGLGLPTIAMALSII 218
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AF+ GSPLY KLKPGGSPL RL QVIVAA KKRKA+ P DP LLY N ELD+ ISV+G L
Sbjct: 219 AFLVGSPLYKKLKPGGSPLVRLAQVIVAATKKRKAVAPADPSLLYENKELDATISVNGRL 278
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
+HTNQFKW DKAA VT+ E T+ +PPNLWRLATVHRVEELKSI+RMLP+WAAGIL VT+S
Sbjct: 279 LHTNQFKWFDKAAIVTDAEATSLNPPNLWRLATVHRVEELKSIVRMLPIWAAGILHVTSS 338
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
SHQHSFTIQQARTM+ HL+ SF+IPPASLSIF +LT+LIG+ LYER FVP+ARRFT NP+
Sbjct: 339 SHQHSFTIQQARTMDRHLSPSFQIPPASLSIFSVLTVLIGIVLYERFFVPLARRFTRNPS 398
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
GI+ LQRMG+GF +NILATIV+SFVEIKRK +AANH+LLD P+AIIPISVFWLVPQ+ LH
Sbjct: 399 GITSLQRMGIGFMVNILATIVASFVEIKRKAIAANHNLLDKPRAIIPISVFWLVPQFALH 458
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWL 423
GVAEVFMSVGHLEFLYDQSPESMRSTA ALYWIAI++GNY+GTL+VTLVHKYTG NWL
Sbjct: 459 GVAEVFMSVGHLEFLYDQSPESMRSTAAALYWIAIAIGNYLGTLLVTLVHKYTGHSRNWL 518
Query: 424 PDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIEDGEIP 483
PDRNLNRGRLE+YYWLVSGIQV+NL+YYV CAW YT+KP+EEV + D + G
Sbjct: 519 PDRNLNRGRLEYYYWLVSGIQVVNLIYYVTCAWLYTHKPVEEVGDSMDKNDVDLARGR-- 576
Query: 484 YKRLNDAIGDGNGDIELVRNATV 506
ND G+ +GD+EL + TV
Sbjct: 577 ----ND--GNVDGDVELAKTGTV 593
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089917|ref|XP_002308865.1| predicted protein [Populus trichocarpa] gi|222854841|gb|EEE92388.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/503 (72%), Positives = 436/503 (86%), Gaps = 5/503 (0%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G++++T+SAVLP LRPPPCP+Q NC+EAS QL +LY+SL+L+S+GSGGI+PCVV FAAD
Sbjct: 117 GMISLTVSAVLPSLRPPPCPSQVNCKEASNSQLWILYMSLILTSIGSGGIKPCVVTFAAD 176
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q DM K+ V +R WNFFNWYYFCMG+ATLTALTVVVYIQDNVGWG G GIPAIGM +S++
Sbjct: 177 QFDMTKSAVGSRSWNFFNWYYFCMGMATLTALTVVVYIQDNVGWGWGLGIPAIGMALSIV 236
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AF+FGS LY KLKP GSPL RL QV+VAA KKRK ++P DP +LY+N ELD+ ISV+G L
Sbjct: 237 AFIFGSSLYNKLKPEGSPLVRLAQVVVAAAKKRKEVMPLDPGMLYQNKELDAAISVNGRL 296
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
+H++QFKW DKAA VT + +S PNLWR+ATVHR+EELK I+RMLP+W+AGILLVTAS
Sbjct: 297 LHSDQFKWFDKAAIVTNEDAKDSKSPNLWRIATVHRIEELKCIVRMLPIWSAGILLVTAS 356
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
SH HSF IQQAR+M+ HL+HSF+IPPAS S+F ILTMLIGL LYER+FVP ARRFTGNP+
Sbjct: 357 SHLHSFVIQQARSMDRHLSHSFEIPPASFSVFSILTMLIGLVLYERLFVPFARRFTGNPS 416
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
GI+CLQRMGVGF INI+ATIVS+ VE+KRK+VAA H+LLD P+AIIPISVFWL+PQY LH
Sbjct: 417 GITCLQRMGVGFFINIIATIVSALVEVKRKQVAALHNLLDAPQAIIPISVFWLLPQYILH 476
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWL 423
G+A+VFMSVGH+EFLYDQSPE+MRSTA AL + +SMGNYIGTLVV+LVHKYTG KNNWL
Sbjct: 477 GIADVFMSVGHMEFLYDQSPETMRSTAAALNSLEVSMGNYIGTLVVSLVHKYTGQKNNWL 536
Query: 424 PDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIEDGEIP 483
PDRNLN G+L++YYWLV+GIQVINLVYYVICAWFYTYKPLEEV E+ D+D ED EI
Sbjct: 537 PDRNLNGGKLDYYYWLVTGIQVINLVYYVICAWFYTYKPLEEVKEE--DDDVPAED-EIQ 593
Query: 484 YKRLNDAIGDGNGDIELVRNATV 506
+KRLN A +GNG++EL RN V
Sbjct: 594 HKRLNYA--EGNGEVELRRNVIV 614
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741689|emb|CBI32821.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/469 (76%), Positives = 414/469 (88%), Gaps = 2/469 (0%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
GLV+IT+SAVLP LRPPPCPT++NC+EAS LQL +LYISLLL+SLG+GGIRPCVV FAAD
Sbjct: 102 GLVSITISAVLPSLRPPPCPTKENCKEASTLQLCILYISLLLTSLGTGGIRPCVVTFAAD 161
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q DM K+ VA+R WNFFNWYYF MG+ATL+ALT+VVYIQDNVGWG G G+P I M +S++
Sbjct: 162 QFDMSKSKVASRSWNFFNWYYFSMGLATLSALTIVVYIQDNVGWGWGLGLPTIAMALSII 221
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AF+ GSPLY KLKPGGSPL RL QVIVAA KKRKA+ P DP LLY N ELD+ ISV+G L
Sbjct: 222 AFLVGSPLYKKLKPGGSPLVRLAQVIVAATKKRKAVAPADPSLLYENKELDATISVNGRL 281
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
+HTNQFKW DKAA VT+ E T+ +PPNLWRLATVHRVEELKSI+RMLP+WAAGIL VT+S
Sbjct: 282 LHTNQFKWFDKAAIVTDAEATSLNPPNLWRLATVHRVEELKSIVRMLPIWAAGILHVTSS 341
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
SHQHSFTIQQARTM+ HL+ SF+IPPASLSIF +LT+LIG+ LYER FVP+ARRFT NP+
Sbjct: 342 SHQHSFTIQQARTMDRHLSPSFQIPPASLSIFSVLTVLIGIVLYERFFVPLARRFTRNPS 401
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
GI+ LQRMG+GF +NILATIV+SFVEIKRK +AANH+LLD P+AIIPISVFWLVPQ+ LH
Sbjct: 402 GITSLQRMGIGFMVNILATIVASFVEIKRKAIAANHNLLDKPRAIIPISVFWLVPQFALH 461
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWL 423
GVAEVFMSVGHLEFLYDQSPESMRSTA ALYWIAI++GNY+GTL+VTLVHKYTG NWL
Sbjct: 462 GVAEVFMSVGHLEFLYDQSPESMRSTAAALYWIAIAIGNYLGTLLVTLVHKYTGHSRNWL 521
Query: 424 PDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKD 472
PDRNLNRGRLE+YYWLVSGIQV+NL+YYV CAW YT+KP D++D
Sbjct: 522 PDRNLNRGRLEYYYWLVSGIQVVNLIYYVTCAWLYTHKP--SRLSDERD 568
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437698|ref|XP_004136628.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus] gi|15391731|emb|CAA93316.2| nitrite transporter [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/488 (75%), Positives = 425/488 (87%), Gaps = 6/488 (1%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G+V IT+SA+LP L PPPCPTQ NC +ASG QL +LY++LLL+SLG+GGIRPCVVAFAAD
Sbjct: 120 GMVTITISAILPSLHPPPCPTQINCTQASGTQLMILYLALLLTSLGAGGIRPCVVAFAAD 179
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q DM K +A R WNFFNWYYFCMG+ATLTALTVVVYIQDNVGWG GFG+P I M +SV+
Sbjct: 180 QFDMTKVGIAGRTWNFFNWYYFCMGMATLTALTVVVYIQDNVGWGWGFGLPTIAMALSVV 239
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AFV GSPLY KLKP GSPL RL QV+VAAFK RKA++P+D +LLYRN ELD+ I++ G L
Sbjct: 240 AFVVGSPLYNKLKPSGSPLVRLAQVVVAAFKNRKAVLPDDSKLLYRNHELDAAIAIQGRL 299
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
VHT+QFKWLDKAA +T ++T ++PPNLWRLATVHRVEELKSIIRMLP+WAAGILLVTAS
Sbjct: 300 VHTDQFKWLDKAAVITSPDST-ANPPNLWRLATVHRVEELKSIIRMLPIWAAGILLVTAS 358
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
SHQHSFTIQQARTMN HLT +F+IPPA+LSIFGIL+ML GL LY+R+ VP A++ T NP+
Sbjct: 359 SHQHSFTIQQARTMNRHLTPTFQIPPATLSIFGILSMLTGLVLYDRLLVPFAKKLTHNPS 418
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
GI+CLQRMGVGFAINILAT+VSS VEIKRKKVAANH LLD+P A IP SVFWLVPQ+ LH
Sbjct: 419 GITCLQRMGVGFAINILATLVSSIVEIKRKKVAANHGLLDNPTATIPFSVFWLVPQFWLH 478
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWL 423
G+AEVFMSVGHLEF+YDQSPES+RSTA ALYW+AIS+GNYIGTL+V LVHKYTG ++NWL
Sbjct: 479 GIAEVFMSVGHLEFMYDQSPESLRSTATALYWLAISVGNYIGTLMVYLVHKYTGEEHNWL 538
Query: 424 PDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIEDGEIP 483
PDRNLNRGRLE+YYWLVSGIQV+NLVYYVICAWFYTYKPLEE E E+K DG+
Sbjct: 539 PDRNLNRGRLEYYYWLVSGIQVMNLVYYVICAWFYTYKPLEE--EKINIENK---DGDQE 593
Query: 484 YKRLNDAI 491
++R D I
Sbjct: 594 WERCEDTI 601
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517928|ref|XP_004165996.1| PREDICTED: LOW QUALITY PROTEIN: probable nitrite transporter At1g68570-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/488 (75%), Positives = 424/488 (86%), Gaps = 6/488 (1%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G+V IT+SA+LP L PPPCPTQ NC +ASG QL +LY++LLL+SLG+GGIRPCVVAFAAD
Sbjct: 120 GMVTITISAILPSLHPPPCPTQINCTQASGTQLMILYLALLLTSLGAGGIRPCVVAFAAD 179
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q DM K +A R WNFFNWYYFCMG+ATLTALTVVVYIQDNVGWG FG+P I M +SV+
Sbjct: 180 QFDMTKVGIAGRTWNFFNWYYFCMGMATLTALTVVVYIQDNVGWGWXFGLPTIAMALSVV 239
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AFV GSPLY KLKP GSPL RL QV+VAAFK RKA++P+D +LLYRN ELD+ I++ G L
Sbjct: 240 AFVVGSPLYNKLKPSGSPLVRLAQVVVAAFKNRKAVLPDDSKLLYRNHELDAAIAIQGRL 299
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
VHT+QFKWLDKAA +T ++T ++PPNLWRLATVHRVEELKSIIRMLP+WAAGILLVTAS
Sbjct: 300 VHTDQFKWLDKAAVITSPDST-ANPPNLWRLATVHRVEELKSIIRMLPIWAAGILLVTAS 358
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
SHQHSFTIQQARTMN HLT +F+IPPA+LSIFGIL+ML GL LY+R+ VP A++ T NP+
Sbjct: 359 SHQHSFTIQQARTMNRHLTPTFQIPPATLSIFGILSMLTGLVLYDRLLVPFAKKLTHNPS 418
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
GI+CLQRMGVGFAINILAT+VSS VEIKRKKVAANH LLD+P A IP SVFWLVPQ+ LH
Sbjct: 419 GITCLQRMGVGFAINILATLVSSIVEIKRKKVAANHGLLDNPTATIPFSVFWLVPQFWLH 478
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWL 423
G+AEVFMSVGHLEF+YDQSPES+RSTA ALYW+AIS+GNYIGTL+V LVHKYTG ++NWL
Sbjct: 479 GIAEVFMSVGHLEFMYDQSPESLRSTATALYWLAISVGNYIGTLMVYLVHKYTGEEHNWL 538
Query: 424 PDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIEDGEIP 483
PDRNLNRGRLE+YYWLVSGIQV+NLVYYVICAWFYTYKPLEE E E+K DG+
Sbjct: 539 PDRNLNRGRLEYYYWLVSGIQVMNLVYYVICAWFYTYKPLEE--EKINIENK---DGDQE 593
Query: 484 YKRLNDAI 491
++R D I
Sbjct: 594 WERCEDTI 601
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504645|ref|XP_003521106.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/495 (68%), Positives = 418/495 (84%), Gaps = 4/495 (0%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
GL++IT+SA+LP RPPPCPTQ NC+EA+ QL +LYISLLL+S+GSGGIRPCVV F+AD
Sbjct: 110 GLISITVSAILPQFRPPPCPTQANCQEATSSQLWILYISLLLTSVGSGGIRPCVVPFSAD 169
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
QIDM K+ VA+RKWN FNWY+F MG A+L+ALT+VVYIQDN+GWG G GIP I M++S++
Sbjct: 170 QIDMTKSGVASRKWNIFNWYFFSMGFASLSALTIVVYIQDNMGWGWGLGIPCIAMLISIV 229
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AFV GSPLY +KP GSPL RL QV VAA KKRK +PEDP+LLY N ELD+ IS+ G L
Sbjct: 230 AFVLGSPLYKTVKPEGSPLVRLAQVTVAAIKKRKEALPEDPKLLYHNWELDASISLEGRL 289
Query: 184 VHTNQFKWLDKAATVTEGETTN-SSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTA 242
+H++Q+KWLDKAA VTE E + ++ P LW+LATVHRVEELKSIIRMLP+WA+GILL+T+
Sbjct: 290 LHSDQYKWLDKAAIVTEEEAKDPTTTPKLWKLATVHRVEELKSIIRMLPIWASGILLITS 349
Query: 243 SSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNP 302
SSH HSF IQQARTM+ HL+ SF+I PAS+SIF +LTM+ G+ LYER+FVP ARRFTGNP
Sbjct: 350 SSHLHSFVIQQARTMDRHLSPSFQISPASMSIFSVLTMMSGVVLYERLFVPFARRFTGNP 409
Query: 303 AGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCL 362
+GI+CLQRMG+GF INI+AT+++ +E+KRK VAA +HLLDDPKA IPISVFWLVPQYCL
Sbjct: 410 SGITCLQRMGIGFIINIIATVIAGLMEMKRKSVAAKYHLLDDPKATIPISVFWLVPQYCL 469
Query: 363 HGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNW 422
HGVAE+FMSVGHLEFL++QSPESMRS+A ALY I ++GNY+GTL+V+LVHKYTG +NNW
Sbjct: 470 HGVAEIFMSVGHLEFLFEQSPESMRSSATALYCITTAIGNYMGTLLVSLVHKYTGKENNW 529
Query: 423 LPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIEDGEI 482
LPDRNLNRG L++YY+LVSGIQV+NLVYY ICAWFYTYK +EE+ E +K+ED + + +
Sbjct: 530 LPDRNLNRGGLDYYYFLVSGIQVVNLVYYFICAWFYTYKSVEEISEKNKEEDLEQANEHV 589
Query: 483 PYKRLNDAIGDGNGD 497
+D + DG +
Sbjct: 590 SS---DDKLNDGKEE 601
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571886|ref|XP_003554102.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/496 (68%), Positives = 417/496 (84%), Gaps = 13/496 (2%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
GL++IT+SA+LP RPPPCPTQ NC+EA+ QL +LYISLLL+S+GSGGIRPCVV F+AD
Sbjct: 109 GLISITVSAILPQFRPPPCPTQVNCQEATSSQLWILYISLLLTSVGSGGIRPCVVPFSAD 168
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q DM K+ VA+RKWN FNWY+F MG+A+L+ALT+VVYIQDN+GWG G GIP I M++S++
Sbjct: 169 QFDMTKSGVASRKWNLFNWYFFSMGLASLSALTIVVYIQDNMGWGWGLGIPCIAMLISII 228
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AFV GSPLY +KP GSPL RL QV VAA KKRK +PEDP+LLY N ELD+ IS+ G L
Sbjct: 229 AFVLGSPLYKTVKPEGSPLVRLAQVTVAAIKKRKEALPEDPQLLYHNWELDTPISLEGRL 288
Query: 184 VHTNQFKWLDKAATVTEGETTN-SSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTA 242
+H+NQ+KWLDKAA VTE E + ++ PNLW+LATVHRVEELKSIIRMLP+WA+GILL+T+
Sbjct: 289 LHSNQYKWLDKAAIVTEEEARDQTTTPNLWKLATVHRVEELKSIIRMLPIWASGILLITS 348
Query: 243 SSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNP 302
SSH HSF IQQARTM+ HL+ SF+I PAS+SIF +LTM+ G+ LYER+FVP ARRFTGNP
Sbjct: 349 SSHLHSFVIQQARTMDRHLSPSFQISPASMSIFSVLTMMSGVVLYERLFVPFARRFTGNP 408
Query: 303 AGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCL 362
+GI+CLQRMG+GF INI+AT+V+ +E+KRK AA +HLLDDPKA IPISVFWLVPQYCL
Sbjct: 409 SGITCLQRMGIGFIINIIATVVAGLMEMKRKSFAAKYHLLDDPKATIPISVFWLVPQYCL 468
Query: 363 HGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNW 422
HGVAE+FMSVGHLEFL++Q+PESMRS+A ALY I ++GNY+GTL+V+LVHKYTG +NNW
Sbjct: 469 HGVAEIFMSVGHLEFLFEQAPESMRSSATALYCITTAIGNYMGTLLVSLVHKYTGKENNW 528
Query: 423 LPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDE--------- 473
LPDRNLNRG L++YY+L+SGIQV+NLVYY+ICAWFYTYKP++E+ E K+E
Sbjct: 529 LPDRNLNRGGLDYYYFLLSGIQVVNLVYYLICAWFYTYKPVDEISERTKEEDLEQANEHI 588
Query: 474 ---DKKIEDGEIPYKR 486
DK ++DG KR
Sbjct: 589 SPDDKLLKDGRDEEKR 604
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509215|ref|XP_003624896.1| Peptide transporter PTR5 [Medicago truncatula] gi|355499911|gb|AES81114.1| Peptide transporter PTR5 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/488 (69%), Positives = 410/488 (84%), Gaps = 1/488 (0%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
GL++IT+S +LP RPPPCPTQ NC+EA+ QL LY+SLLL+SLGSGGIRPCVV F+AD
Sbjct: 114 GLISITVSTILPHFRPPPCPTQVNCKEATSSQLLPLYMSLLLTSLGSGGIRPCVVPFSAD 173
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q DM K VA+RKWN FNWY+F MG A+L+ALT+VVY+QDNVGWG G GIP I M++SV+
Sbjct: 174 QFDMTKEGVASRKWNLFNWYFFIMGFASLSALTIVVYVQDNVGWGWGLGIPTIAMMISVI 233
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
+FV GSPLY +KP GSPL RL QV+VAA KKRK +P+DP+ LY N ELD+ IS+ G+L
Sbjct: 234 SFVLGSPLYKTVKPEGSPLVRLAQVVVAAVKKRKETLPDDPKFLYHNRELDAAISLEGSL 293
Query: 184 VHTNQFKWLDKAATVTEGETTNS-SPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTA 242
+H+NQ+KWLDKAA +TE E +S +PPNLW L TVHRVEELK+IIRMLP+WA+GILL+ +
Sbjct: 294 LHSNQYKWLDKAAIITEEEAKDSNAPPNLWNLVTVHRVEELKAIIRMLPIWASGILLIMS 353
Query: 243 SSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNP 302
SSH SF IQQAR+M+ HLTHSF+I PA++SIFG+LTM+IG+ LYER FVP ARRFT NP
Sbjct: 354 SSHLGSFVIQQARSMDRHLTHSFQIAPANMSIFGVLTMMIGVMLYERFFVPFARRFTKNP 413
Query: 303 AGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCL 362
AGI+CLQRMGVGF +NI+ATIVS+ VE KRK VAA +LLDDPKAIIP SVFWLVPQYCL
Sbjct: 414 AGITCLQRMGVGFVVNIIATIVSALVETKRKTVAAKFNLLDDPKAIIPFSVFWLVPQYCL 473
Query: 363 HGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNW 422
HGVAEVFMSVGHLEFL+DQSPESMRS+A ALY I ++GNY GTL+V++VHKYTG +NNW
Sbjct: 474 HGVAEVFMSVGHLEFLFDQSPESMRSSATALYCITTAIGNYSGTLLVSIVHKYTGKENNW 533
Query: 423 LPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVCEDDKDEDKKIEDGEI 482
LPDRNLNRGRL++YY+L+SGIQVINL+YY++CAWFYTYKP+ EVCE K+ED + I
Sbjct: 534 LPDRNLNRGRLDYYYYLISGIQVINLIYYIVCAWFYTYKPMGEVCERSKEEDLEQASANI 593
Query: 483 PYKRLNDA 490
+ L D
Sbjct: 594 SIENLKDG 601
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 506 | ||||||
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.909 | 0.771 | 0.570 | 3.6e-144 | |
| TAIR|locus:2080235 | 570 | PTR1 "peptide transporter 1" [ | 0.895 | 0.794 | 0.417 | 1.8e-96 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.897 | 0.776 | 0.410 | 2.2e-96 | |
| TAIR|locus:2150124 | 570 | PTR5 "peptide transporter 5" [ | 0.891 | 0.791 | 0.412 | 2.6e-95 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.869 | 0.745 | 0.407 | 8.7e-95 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.893 | 0.729 | 0.406 | 1.4e-87 | |
| TAIR|locus:2041140 | 545 | PTR4 "peptide transporter 4" [ | 0.501 | 0.466 | 0.383 | 1.7e-84 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.895 | 0.771 | 0.391 | 4.5e-82 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.883 | 0.756 | 0.358 | 2.5e-81 | |
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.883 | 0.768 | 0.375 | 3.2e-81 |
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1409 (501.1 bits), Expect = 3.6e-144, P = 3.6e-144
Identities = 264/463 (57%), Positives = 333/463 (71%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFAAD 63
G+ +T+SA++P LRPPPC ++ C A IRPCVVAF AD
Sbjct: 108 GMTLLTISAIIPTLRPPPCKGEEVCVVADTAQLSILYVALLLGALGSGGIRPCVVAFGAD 167
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D + WN+FNWYYFCMG A L A+TV+V+IQDNVGWGLG GIP + M +SV+
Sbjct: 168 QFDESDPNQTTKTWNYFNWYYFCMGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVI 227
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
AFV G LY L P GSP TRL QV VAAF+KRK + DP LLY N E+D+ IS+ G L
Sbjct: 228 AFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKL 287
Query: 184 VHTNQFKWLDKAATVTEGETTNSSP-PNLWRLATVHRVEELKSIIRMLPVWAAGILLVTA 242
HT +LDKAA VTE + PN WRL+TVHRVEELKS+IRM P+ A+GILL+TA
Sbjct: 288 THTKHMSFLDKAAIVTEEDNLKPGQIPNHWRLSTVHRVEELKSVIRMGPIGASGILLITA 347
Query: 243 SSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNP 302
+ Q +F++QQA+TMN HLT+SF+IP S+S+F + ML + Y+R+FV +AR+FTG
Sbjct: 348 YAQQGTFSLQQAKTMNRHLTNSFQIPAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLE 407
Query: 303 AGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCL 362
GI+ L RMG+GF I+I+AT+V+ FVE+KRK VA H LLD P I+PIS WL+PQY L
Sbjct: 408 RGITFLHRMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGL 467
Query: 363 HGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKN-- 420
HGVAE FMS+GHLEF YDQ+PESMRSTA AL+W+AIS+GNY+ TL+VTLVHK++ +
Sbjct: 468 HGVAEAFMSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGS 527
Query: 421 NWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPL 463
NWLPD NLNRGRLE++YWL++ +Q +NLVYY+ CA YTYKP+
Sbjct: 528 NWLPDNNLNRGRLEYFYWLITVLQAVNLVYYLWCAKIYTYKPV 570
|
|
| TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 192/460 (41%), Positives = 277/460 (60%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFAAD 63
G+ +TLSA +PGL+P C C S I+PCV +F AD
Sbjct: 109 GMTLLTLSASVPGLKPGNCNAD-TCHPNSSQTAVFFVALYMIALGTGG-IKPCVSSFGAD 166
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D +K +FFNW+YF + + L A TV+V+IQ NVGWG GFG+P + MV++V
Sbjct: 167 QFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVC 226
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
F FGS Y +PGGSPLTR+ QVIVAAF+K VPED LL+ + +S I L
Sbjct: 227 FFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKL 286
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
VHT+ K+ DKAA ++ ++ N WRL +V +VEELKSII +LPVWA GI+ T
Sbjct: 287 VHTDNLKFFDKAAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVY 346
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
S + + Q TM+ H+ +F+IP ASLS+F +++L +Y++ +P+AR+FT N
Sbjct: 347 SQMSTMFVLQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNER 406
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
G + LQRMG+G ++I A I + +E+ R H+ D + I +S+FW +PQY L
Sbjct: 407 GFTQLQRMGIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLI 464
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT--GSKNN 421
G AEVF +G LEF YDQ+P++MRS AL +++GNY+ T++VT+V K T K
Sbjct: 465 GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPG 524
Query: 422 WLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461
W+PD NLNRG L+++++L++ + +N + Y+ + Y YK
Sbjct: 525 WIPD-NLNRGHLDYFFYLLATLSFLNFLVYLWISKRYKYK 563
|
|
| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
Identities = 189/460 (41%), Positives = 286/460 (62%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFAAD 63
G+ A+TLSA +P L+P C C A+ I+PCV +F AD
Sbjct: 126 GMSALTLSASVPALKPAEC-IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGAD 184
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D + RK +FFNW+YF + I L + +++V+IQ+N GWGLGFGIP + M +++
Sbjct: 185 QFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIA 244
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
+F FG+PLY KPGGSP+TR++QV+VA+F+K VPED LLY + +S I+ +
Sbjct: 245 SFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKI 304
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
HT+ ++LDKAA ++E E+ + N WRL TV +VEELK +IRM P+WA+GI+
Sbjct: 305 EHTDDCQYLDKAAVISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVY 364
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
+ + +QQ R MN + SF++PPA+L F +++I + LY+R VP+AR+FTG
Sbjct: 365 AQMSTMFVQQGRAMNCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDK 423
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
G + +QRMG+G +++L ++ VEI R +A + L++ A +PISV W +PQY +
Sbjct: 424 GFTEIQRMGIGLFVSVLCMAAAAIVEIIRLHMANDLGLVESG-APVPISVLWQIPQYFIL 482
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT--GSKNN 421
G AEVF +G LEF YDQSP++MRS AL + ++GNY+ +L++TLV +T +
Sbjct: 483 GAAEVFYFIGQLEFFYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEG 542
Query: 422 WLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461
W+ D NLN G L++++WL++G+ ++N+ Y A Y K
Sbjct: 543 WISD-NLNSGHLDYFFWLLAGLSLVNMAVYFFSAARYKQK 581
|
|
| TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 190/461 (41%), Positives = 280/461 (60%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFAAD 63
G+ +T+SA +PGL P C + + C A+ I+PCV +F AD
Sbjct: 110 GMTLLTISASVPGLTPT-C-SGETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGAD 166
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVL 123
Q D K +FFNW+YF + + + A +V+V+IQ NVGWG G G+P + M ++V+
Sbjct: 167 QFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVV 226
Query: 124 AFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
F GS Y KPGGSPLTR+ QVIVA+ +K K +PED LLY N + +S I L
Sbjct: 227 FFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKL 286
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
HT + DKAA TE + ++ + W+L TV +VEELK++IR+LP+WA GI+ +
Sbjct: 287 EHTKILTFFDKAAVETESDNKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVY 346
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
S + + Q T++ H+ +FKIP ASLS+F L++L +Y+++ VP AR++TG+
Sbjct: 347 SQMGTVFVLQGNTLDQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHER 406
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
G + LQR+G+G I+I + + + +E+ R H+L ++ IP+++FW VPQY L
Sbjct: 407 GFTQLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYNEET--IPMTIFWQVPQYFLV 464
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT--GSKNN 421
G AEVF +G LEF YDQ+P++MRS AL AI+ GNY+ T +VTLV K T G +
Sbjct: 465 GCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPG 524
Query: 422 WLPDRNLNRGRLEHYYWLVSGIQVIN-LVYYVICAWFYTYK 461
W+ +NLN G L++++WL++G+ +N LVY I W YTYK
Sbjct: 525 WIA-KNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKW-YTYK 563
|
|
| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 186/456 (40%), Positives = 288/456 (63%)
Query: 4 GLVAITLSAVLPGLRPPPCP--TQKNCREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFA 61
G+ +TLSA LP L+P C C A+ I+PCV +F
Sbjct: 137 GMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196
Query: 62 ADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMS 121
ADQ D RK +FFNW+YF + I + + T++V++Q+NVGWGLGF IP + M +S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256
Query: 122 VLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHG 181
+ +F G+PLY KPGGSP+TR+ QV+VAA++K K +PED LY E +S+I+
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSR 316
Query: 182 TLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVT 241
+ HT+ +K+LDKAA ++E E+ + + N W+L TV +VEE+K++IRM P+WA+GI+
Sbjct: 317 KIQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSV 376
Query: 242 ASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGN 301
S + +QQ R+MN + SF+IPPAS +F L +LI + +Y+R VP RRFTG
Sbjct: 377 LYSQISTLFVQQGRSMN-RIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGI 435
Query: 302 PAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYC 361
P G++ LQRMG+G +++L+ ++ VE R ++A + + +S+FW +PQY
Sbjct: 436 PKGLTDLQRMGIGLFLSVLSIAAAAIVETVRLQLAQD---------FVAMSIFWQIPQYI 486
Query: 362 LHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT--GSK 419
L G+AEVF +G +EF YD+SP++MRS AL + ++G+Y+ +L++TLV +T G K
Sbjct: 487 LMGIAEVFFFIGRVEFFYDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGK 546
Query: 420 NNWLPDRNLNRGRLEHYYWLVSGIQVINL-VYYVIC 454
+ W+PD +LN+G L++++WL+ + ++N+ VY +IC
Sbjct: 547 DGWVPD-DLNKGHLDYFFWLLVSLGLVNIPVYALIC 581
|
|
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 189/465 (40%), Positives = 273/465 (58%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQK--NCREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFA 61
GL+ ITL+A P L P C +Q +C + IRPC + F
Sbjct: 136 GLITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFG 195
Query: 62 ADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMS 121
DQ D R +FFNWYY + + TVVVYIQD V W +GF IP M ++
Sbjct: 196 VDQFDQRTEEGVKGVASFFNWYYMTFTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALA 255
Query: 122 VLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVP--EDPRLLYRNGELDSVISV 179
V+ F G YV +KP GS + + QVIVAA KKRK +P +D + Y + + S SV
Sbjct: 256 VVMFFAGMKRYVYVKPEGSIFSGIAQVIVAARKKRKLKLPAEDDGTVTYYDPAIKS--SV 313
Query: 180 HGTLVHTNQFKWLDKAATVTEGETTNSSPP-NLWRLATVHRVEELKSIIRMLPVWAAGIL 238
L +NQF+ LDKAA V EG+ T PP + WRL +V VEE+K +IR++P+W+AGI+
Sbjct: 314 LSKLHRSNQFRCLDKAAVVIEGDLTPEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGII 373
Query: 239 LVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRF 298
+ A + Q +FT+ QA M+ +L F+IP SLS+ +LT+ I L Y+R+FVP RR
Sbjct: 374 SLAAMTTQGTFTVSQALKMDRNLGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRI 433
Query: 299 TGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVP 358
TG+ +GI+ LQR+G G I + IV+ VE R+ + N DP + P+SVFWL P
Sbjct: 434 TGHKSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSIN---AGDPTGMTPMSVFWLSP 490
Query: 359 QYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGS 418
Q L G+ E F +G +EF Q PE MRS A +L+ ++ + +Y+ + +VT+VHK++G
Sbjct: 491 QLILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGG 550
Query: 419 KN--NWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461
+ +WL ++NLN G+L+++Y+L++ + V+NLVY+ CA Y YK
Sbjct: 551 HDRPDWL-NKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGYRYK 594
|
|
| TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 100/261 (38%), Positives = 169/261 (64%)
Query: 200 EGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNT 259
EG+ N++P W+L TV +VEE+K ++R++P+WA+GI+ S ++ +QQ R M
Sbjct: 289 EGDA-NTNP---WKLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKR 344
Query: 260 HLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINI 319
+ F+IPPA+L +F ++LI + +Y+R+ VP+ RRFTG G + LQRMG+G +++
Sbjct: 345 TIG-LFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSV 403
Query: 320 LATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLY 379
L+ ++ VE R ++A + L++ I+P+++FW +PQY L G A VF VG +EF Y
Sbjct: 404 LSLTFAAIVETVRLQLARDLDLVESGD-IVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFY 462
Query: 380 DQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWL 439
+QSP+SMRS A + ++GNY+ +L++TLV Y K+ W+P N+N G L++++WL
Sbjct: 463 EQSPDSMRSLCSAWALLTTTLGNYLSSLIITLV-AYLSGKDCWIPSDNINNGHLDYFFWL 521
Query: 440 VSGIQVINLVYYVICAWFYTY 460
+ + +N+ +V + YT+
Sbjct: 522 LVSLGSVNIPVFVFFSVKYTH 542
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 183/468 (39%), Positives = 271/468 (57%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKN--CREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFA 61
G VA+ L+AV+ L P C + C S IRPC + F
Sbjct: 104 GSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGGIRPCNLPFG 163
Query: 62 ADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMS 121
ADQ D + +FFNWY+F A + +LT++VY+Q NV W +G IPAI M++
Sbjct: 164 ADQFDPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYVQSNVSWSIGLAIPAILMLLG 223
Query: 122 VLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHG 181
+ F GS LYVK+K GSP+ +T+VIV A KKR+ + P P LY D S G
Sbjct: 224 CIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRR-LKPVGPNELYNYIASDFKNSKLG 282
Query: 182 TLVHTNQFKWLDKAATVTEGETTNS--SPPNLWRLATVHRVEELKSIIRMLPVWAAGILL 239
HT QF++LDK+A T+ + N SP + W+L ++ +VEE+K +IR+LPVW + L
Sbjct: 283 ---HTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVEEVKCVIRVLPVWLSAALF 339
Query: 240 VTASSHQHSFTIQQARTMNTHL-THSFKIPPASLSIFGILTMLIGLALYERIFVPIARRF 298
A Q ++TI Q+ + L SF+IP S ++F +L M I + +Y+R+ VP R++
Sbjct: 340 YLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGMTIFIPIYDRVLVPFLRKY 399
Query: 299 TGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLD-DPK--AIIPISVFW 355
TG GI+ LQR+G G + I + +VS+ VE R+KVA L P+ AI +S W
Sbjct: 400 TGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKPTLGLAPRKGAISSMSGMW 459
Query: 356 LVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKY 415
L+PQ L G+A+ VG +EF Y Q PE+MRS A +LY+ I + +Y+ T +++ VH
Sbjct: 460 LIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCGIGLASYLSTFLLSAVHDT 519
Query: 416 T-G-SKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461
T G S +WLP+ +LN+GRLE++Y+LV+G+ +NL Y+++ + +Y YK
Sbjct: 520 TEGFSGGSWLPE-DLNKGRLEYFYFLVAGMMTLNLAYFLLVSHWYRYK 566
|
|
| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 167/466 (35%), Positives = 273/466 (58%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQK--NCREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFA 61
G+V + L+A+LP ++P PC NC A+ IRPC +AF
Sbjct: 108 GMVVLWLTAMLPQVKPSPCVATAGTNCSSATSSQLALLYTAFALISIGSGGIRPCSLAFG 167
Query: 62 ADQIDMRKATVANRKW-NFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVM 120
ADQ+D ++ R +FF WYY +A L A TV+VYIQD++GW +GFGIPAI M++
Sbjct: 168 ADQLDNKENPKNERVLESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLL 227
Query: 121 SVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPE--DPRLLYRNGELDSVIS 178
+ FVF SPLYVK S T L QV+ AA+ KR +P+ D R Y + DS +
Sbjct: 228 AGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAYVKRNLTLPDHHDSRDCYYRLK-DSELK 286
Query: 179 VHGTLVHTNQFKWLDKAATVTEGETTNSSPP---NLWRLATVHRVEELKSIIRMLPVWAA 235
+++ ++L+KA ++ + S N WRL T +VE+LK++++++PVW+
Sbjct: 287 AP-----SDKLRFLNKACAISNRDEDLGSDGLALNQWRLCTTDQVEKLKALVKVIPVWST 341
Query: 236 GILLVTASSHQHSFTIQQARTMNTHLTHS--FKIPPASLSIFGILTMLIGLALYERIFVP 293
GI++ + + Q+SF + QA++M+ L+ + F+IP S +F I+ ++ + LY+R +P
Sbjct: 342 GIMM-SINVSQNSFQLLQAKSMDRRLSSNSTFQIPAGSFGMFTIIALISWVVLYDRAILP 400
Query: 294 IARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353
+A + G P ++ RMG+G I+ LA VS+ VE R+K A + L +D + + IS
Sbjct: 401 LASKIRGRPVRVNVKIRMGLGLFISFLAMAVSATVEHYRRKTAISQGLANDANSTVSISA 460
Query: 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413
WLVPQY LHG+AE +G EF Y + P+SM S A +L+ + +++ N + ++++ V
Sbjct: 461 MWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMSSIAASLFGLGMAVANILASVILNAVK 520
Query: 414 KYTGSKN-NWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458
+ N +W+ D N+N+G ++YYW+++ + +N++YYV+C+W Y
Sbjct: 521 NSSKQGNVSWIED-NINKGHYDYYYWVLAILSFVNVIYYVVCSWSY 565
|
|
| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 174/464 (37%), Positives = 270/464 (58%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQ--KNCREASXXXXXXXXXXXXXXXXXXXXIRPCVVAFA 61
G++ +TLS +PG++PP C T +NC +AS +P +
Sbjct: 112 GMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIG 171
Query: 62 ADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMS 121
ADQ D+ +K +FFNW+ F + TL A TV+VY+QDNVGW LG+G+P +G+ +S
Sbjct: 172 ADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAIS 231
Query: 122 VLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSV-ISVH 180
+ F+ G+P Y P GSP T++ +VIVA+F+K A + D + EL S+
Sbjct: 232 ITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHDITSFH---ELPSLEYERK 288
Query: 181 GTL-VH-TNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGIL 238
G +H T ++LD+A+ T G TN W L T VEE K ++RMLPV +
Sbjct: 289 GAFPIHPTPSLRFLDRASLKT-G--TNHK----WNLCTTTEVEETKQMLRMLPVLFITFV 341
Query: 239 LVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRF 298
+ ++ ++Q T++ +T SF IPPASLS F L+MLI + LY+R+FV I R+F
Sbjct: 342 PSMMLAQINTLFVKQGTTLDRKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKF 401
Query: 299 TGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVP 358
TGNP GI+ LQRMG+G +IL IV+S E R KVAA+H L+ +P+++F L+P
Sbjct: 402 TGNPRGITLLQRMGIGLIFHILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLP 461
Query: 359 QYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGS 418
Q+ L G+A+ F+ V LEF YDQ+PESM+S + ++++GN++ + +++ V + T
Sbjct: 462 QFVLMGMADSFLEVAKLEFFYDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKK 521
Query: 419 KNN-WLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461
+ W+ + NLN RL++YY + + ++N V +++ FY Y+
Sbjct: 522 RGRGWILN-NLNESRLDYYYLFFAVLNLVNFVLFLVVVKFYVYR 564
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SX20 | PTR18_ARATH | No assigned EC number | 0.5763 | 0.9545 | 0.8104 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023300001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (599 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 506 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-98 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-18 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 2e-17 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 4e-06 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 3e-05 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 301 bits (774), Expect = 1e-98
Identities = 128/392 (32%), Positives = 189/392 (48%), Gaps = 26/392 (6%)
Query: 6 VAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQI 65
I L +++ + S +Q+ + YI L L +LG+GGI+P V AF ADQ
Sbjct: 2 KTILLGSIIYAIGHVLLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQF 61
Query: 66 DMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAF 125
D + R+ FF+W+YF + +L A + Y+Q NVG+ LGFG+PA+GM++++L F
Sbjct: 62 DETQD---PRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLALLVF 118
Query: 126 VFGSPLYVKL-KPGGSPLTRLT-QVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183
+ GS Y K PGGSP T +I AA K RK +P+D LY E + S+ T
Sbjct: 119 LLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWALEKYNKRSISQTK 178
Query: 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTAS 243
VHT V V L++I+ MLP+WA IL
Sbjct: 179 VHTR--------VAVIFIPLPKFWALF----DQQGSVWLLQAILLMLPIWAFWILPDQMW 226
Query: 244 SHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPA 303
+ + ++Q TM+ + F+IPPAS F L +LI L + + + P+ R
Sbjct: 227 TQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR----LKR 282
Query: 304 GISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363
G++ QR G+G I I+A +++ VE KR + AA L P +P+ + W +P+ +
Sbjct: 283 GLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLT-SPGWTVPLFILWSLPELFIS 341
Query: 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYW 395
GV G LEF D P SM S L
Sbjct: 342 GVGL----AGALEFAPDALPSSMMSLWTLLSA 369
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 4e-18
Identities = 67/386 (17%), Positives = 132/386 (34%), Gaps = 50/386 (12%)
Query: 32 SGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIAT 91
S G LYI L L +G+G +P + + + R+ F +Y + I +
Sbjct: 113 SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD----PRRDGGFTLFYMGINIGS 168
Query: 92 LTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVA 151
L A + + N GW +GFG+ A+GM++ ++ F+ G +VK G
Sbjct: 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG-RRHVKGIGG------------- 214
Query: 152 AFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNL 211
P L V+ + L V S +
Sbjct: 215 ----VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVI------SILIAI 264
Query: 212 WRLATVHR----VEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKI 267
A R +E + ++ +P++ ++ S A F++
Sbjct: 265 IYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEV 324
Query: 268 PPASLSIFGILTMLIGLALYERIFVP-IARRFTGNPAGISCLQRMGVGFAINILATIVSS 326
PPA +++ + ++ + + +G + L ++
Sbjct: 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPI-----KFALGLILAGLGFLILL 379
Query: 327 FVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386
I + +SV+WLV Y L E+F+S L + +P ++
Sbjct: 380 LAGIWFGG-PSGL-----------VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL 427
Query: 387 RSTAVALYWIAISMGNYIGTLVVTLV 412
+S +A++++ ++ G +G V L
Sbjct: 428 KSFIMAMWFLTVAAGQTLGGQVAGLT 453
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Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 84/339 (24%), Positives = 142/339 (41%), Gaps = 74/339 (21%)
Query: 4 GLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAAD 63
G +L AV P L P +A L + L L +LG+GGI+PCV AF D
Sbjct: 67 GHALASLGAV-PSLGHPL-------HDALSL------VGLALIALGTGGIKPCVSAFGGD 112
Query: 64 QIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-------WGLGFGIPAI 116
Q + R+ ++ R FF+++YF + +L + + ++ +VG + L FG+P I
Sbjct: 113 QFEERQLSLRFR---FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGI 169
Query: 117 GMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSV 176
M ++++ F GS +Y K P G+ ++++ + IV A KKR ED L+
Sbjct: 170 LMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKRFRTRSEDWPRLH-------- 221
Query: 177 ISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRML----PV 232
WLD AA + + K ++R+L P+
Sbjct: 222 --------------WLDWAAPK----------------YLIRMIRSTKRLLRVLFLFIPL 251
Query: 233 WAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFV 292
L Q S QA M+ + F I P + L +LI + +++ +
Sbjct: 252 PMFWALF----DQQGSRWTLQATRMDGDVGL-FPIQPDQMQAVNPLLVLILVPIFDYVVY 306
Query: 293 PIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIK 331
P + + L++M VG + LA V++ ++ K
Sbjct: 307 PALAKCGTR---FTSLRKMAVGMLLAALAFAVAALLQNK 342
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 36 LGVLYISLLLSSLGSGGIRP---CVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATL 92
+++ L ++GSG + +V ++ DM + F +Y + I +
Sbjct: 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGG------FTLFYMSINIGSF 155
Query: 93 TALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGS 129
+ + I +N G+ +GF + A+GMV+ +L F G
Sbjct: 156 ISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLV 408
+S+ W +PQY L EV SV LEF Y Q+P +M+S AL+ + +++GN I ++
Sbjct: 550 VSILWQLPQYVLATAGEVMFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNIIVLII 607
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 506 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.57 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.46 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.44 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.42 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.4 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.4 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.39 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.37 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.37 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.36 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.36 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.36 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.35 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.33 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.33 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.3 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.3 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.29 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.29 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.28 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.28 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.27 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.25 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.24 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.24 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.24 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.24 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.23 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.22 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.21 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.21 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.21 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.21 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.21 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.2 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.19 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.18 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.18 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.17 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.14 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.14 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.11 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.1 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.09 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.09 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.09 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.09 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.07 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.06 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.06 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.06 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.05 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.05 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.04 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.03 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.03 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.03 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.03 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.01 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.95 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.95 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.92 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.92 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.88 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.88 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.88 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.86 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.86 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.86 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.85 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.83 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.83 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.8 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.79 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.79 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.78 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.74 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.68 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.66 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.65 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.63 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.61 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.6 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.44 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.39 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.38 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.35 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.32 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.28 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.28 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.25 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.11 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.1 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.1 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.1 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.1 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.08 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.06 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.04 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.02 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.02 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.01 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.01 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.0 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.96 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.9 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 97.89 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 97.89 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 97.89 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.88 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.87 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 97.86 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 97.85 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 97.82 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 97.82 | |
| PRK10054 | 395 | putative transporter; Provisional | 97.81 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 97.8 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 97.79 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.73 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 97.72 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.71 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 97.71 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 97.71 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.7 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.67 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.65 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 97.65 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 97.65 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.63 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.62 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 97.62 | |
| PRK10504 | 471 | putative transporter; Provisional | 97.62 | |
| PRK03699 | 394 | putative transporter; Provisional | 97.62 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 97.59 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.56 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 97.55 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 97.54 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 97.54 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 97.54 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 97.53 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.51 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 97.48 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 97.45 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 97.45 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.44 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 97.43 | |
| PRK12382 | 392 | putative transporter; Provisional | 97.43 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.42 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 97.41 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.41 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.39 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.35 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.3 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.27 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.27 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.26 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.26 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 97.21 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.18 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.17 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.17 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.16 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.14 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 97.12 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 97.12 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 97.1 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 97.1 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.09 | |
| PRK11043 | 401 | putative transporter; Provisional | 97.05 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 97.05 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.05 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.03 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 97.02 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 96.98 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 96.96 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 96.87 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 96.81 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.77 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.76 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 96.75 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 96.74 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 96.7 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 96.7 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.54 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.53 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.48 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 96.38 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 96.38 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 96.31 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 96.3 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 96.15 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 96.13 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 96.07 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 96.06 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 95.94 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 95.8 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 95.77 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.69 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 95.53 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 95.49 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 95.47 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 95.04 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 94.75 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 94.74 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 94.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 94.53 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 94.53 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 94.52 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 94.45 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 94.39 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 94.32 | |
| PRK11462 | 460 | putative transporter; Provisional | 94.3 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 94.14 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 94.02 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 93.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 93.35 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 93.16 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 93.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 91.97 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 91.83 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 91.73 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 91.44 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 91.11 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 91.04 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.67 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 90.6 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 90.44 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 89.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 88.17 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 87.95 | |
| KOG4255 | 439 | consensus Uncharacterized conserved protein [Funct | 87.6 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 86.75 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 86.53 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 85.92 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 85.32 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 84.95 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 84.38 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 83.09 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 82.43 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 81.61 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 80.84 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=555.47 Aligned_cols=452 Identities=46% Similarity=0.795 Sum_probs=404.5
Q ss_pred hhhHHHHHHhhCCCCCCCCC---CCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHH
Q 010589 3 QGLVAITLSAVLPGLRPPPC---PTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNF 79 (506)
Q Consensus 3 ~g~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~ 79 (506)
+|+++|++++..+.++|..| ..+..|++|...+...+|.++.++++|+|+.|||+.++++|||++.+++++.++.++
T Consensus 116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~f 195 (571)
T KOG1237|consen 116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSF 195 (571)
T ss_pred HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccc
Confidence 58999999999999999998 345789999999999999999999999999999999999999998777666678899
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhcccc
Q 010589 80 FNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAI 159 (506)
Q Consensus 80 f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~ 159 (506)
|+|||+.+|+|.+++.++..|+|++.||.++|+++++.|++++++|+.+++.|++.+|.++|.+.+.||++++.++++..
T Consensus 196 FnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~ 275 (571)
T KOG1237|consen 196 FNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAV 275 (571)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCcccccccCCcccccccccccccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 010589 160 VPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILL 239 (506)
Q Consensus 160 ~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif 239 (506)
.+.+.+.. +.... ......+++.++++|++++..+.+...+...+||++|+.++|||.|+++|++|+|...++|
T Consensus 276 ~~~~~~~~-~~~~~-----~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~ 349 (571)
T KOG1237|consen 276 VSLDPEEL-YYDCT-----DSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIY 349 (571)
T ss_pred CCCcchhc-ccccc-----ccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHH
Confidence 66543211 11000 0012244677899999998876544445567899999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHhccCCCCcceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHH
Q 010589 240 VTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINI 319 (506)
Q Consensus 240 ~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~ 319 (506)
|+++.|+.|.++.|+.+||++++..|++|+++++.+..+.++++.|++|++++|+.||.++++.++++++||++|++++.
T Consensus 350 ~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si 429 (571)
T KOG1237|consen 350 STVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSI 429 (571)
T ss_pred HHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHH
Confidence 99999999999999999999998339999999999999999999999999999999999987778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHH
Q 010589 320 LATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAIS 399 (506)
Q Consensus 320 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~a 399 (506)
++|..++++|.+|++.+.+. ....+++|++||+|||+++|+||++.+++++||+|+|||++|||+.+++|+++.+
T Consensus 430 ~sm~~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a 504 (571)
T KOG1237|consen 430 LSMAVAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVA 504 (571)
T ss_pred HHHHHHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999887651 1234589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccccCcc
Q 010589 400 MGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEE 465 (506)
Q Consensus 400 ig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~ 465 (506)
+|++++..++.++...+...++|++..|+|++|+++|||+++.+..++.+.|+.++++|++++.++
T Consensus 505 ~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 505 VGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 999999999999998874322799934999999999999999999999999999999998886543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=426.08 Aligned_cols=368 Identities=19% Similarity=0.309 Sum_probs=282.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
++..+++++++|++|+|++|||++++++|||+++|| |||.+|++||+++|+|++++|++++++++++|||.+|+++
T Consensus 116 ~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~a 191 (498)
T COG3104 116 GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLA 191 (498)
T ss_pred cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 578899999999999999999999999999999997 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecC--CCCCchhH------HHHHHHHHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLK--PGGSPLTR------LTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~--p~~~pl~~------~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
+++|.++++.|++++|++...+ ++.+|.+. ...++......- .+ .+...
T Consensus 192 avGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-------------~~l~~ 248 (498)
T COG3104 192 AVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL----------LT-------------LLLNQ 248 (498)
T ss_pred HHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH----------HH-------------HHHHH
Confidence 9999999999999998887653 23333211 000000000000 00 00000
Q ss_pred cchhh-hhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCc
Q 010589 187 NQFKW-LDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHS 264 (506)
Q Consensus 187 ~~~~~-l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~g 264 (506)
+..+. +....+.....+ -.....| .+.+ +||||+++.+++++..++||++|+|++|.+.+|+ +++|++.. |
T Consensus 249 ~~~~~~~~~~~i~~~~~~--~~~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g 321 (498)
T COG3104 249 NTFSGVLLVISILIAIIY--FAEAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-G 321 (498)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-c
Confidence 00000 000000000000 0000011 1233 8899999999999999999999999999888776 67788855 7
Q ss_pred ceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 010589 265 FKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDD 344 (506)
Q Consensus 265 f~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~ 344 (506)
+++|++|+|++||++|++++|+++++|+|+.++. ++| ++..|+++|++++++|++++....... +..
T Consensus 322 ~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~--~~p--s~~~KFalGl~l~g~~fl~l~~~~~~~---~~~------ 388 (498)
T COG3104 322 FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN--KQP--STPIKFALGLILAGLGFLILLLAGIWF---GGP------ 388 (498)
T ss_pred eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC--CCC--CcchHHHHHHHHHHHHHHHHHHHHHhh---cCC------
Confidence 9999999999999999999999999999988774 444 899999999999999999988764321 111
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCC
Q 010589 345 PKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLP 424 (506)
Q Consensus 345 ~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~ 424 (506)
...+|+||++++|+++++||+|+||+|+|+++++||++++|++||.|+++.++|+.+++.+..+.....
T Consensus 389 ---~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~-------- 457 (498)
T COG3104 389 ---SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD-------- 457 (498)
T ss_pred ---CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc--------
Confidence 226899999999999999999999999999999999999999999999999999999998887433100
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 425 DRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 425 ~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
+ ..+......+|+.++..+++..++.+...|+.++.
T Consensus 458 ~-~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~ 493 (498)
T COG3104 458 P-AYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRM 493 (498)
T ss_pred h-hhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 0 11222347889999999999999999888876543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=380.95 Aligned_cols=362 Identities=27% Similarity=0.519 Sum_probs=299.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc-------cc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV-------GW 107 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~-------g~ 107 (506)
+...++++++++++|+|++|||++++++|||+++++ ++|+++|+||||++|+|+++++++++++++++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 456688999999999999999999999999987542 47999999999999999999999999998654 69
Q ss_pred chhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCccccccccccccccc
Q 010589 108 GLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTN 187 (506)
Q Consensus 108 ~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~ 187 (506)
+++|++++++|++++++|..++|+|++.+|.++++.++.++++.+.+++......+ .
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-----------------------~ 217 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-----------------------W 217 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----------------------c
Confidence 99999999999999999999999998888888988888899988887643221110 0
Q ss_pred chhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCccee
Q 010589 188 QFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKI 267 (506)
Q Consensus 188 ~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~i 267 (506)
..+|+|++... ..++++||+|++++++++++..++||+.|+|+.|.+.+|+.+||++++ ++++
T Consensus 218 ~~~~ld~a~~~----------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g~~i 280 (654)
T TIGR00926 218 PLHWLDYAKDK----------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-GFEI 280 (654)
T ss_pred chhHHHHhccc----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-CEec
Confidence 13466665421 124678999999999999999999999999999999999999998887 8999
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Q 010589 268 PPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVA----------- 336 (506)
Q Consensus 268 p~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~----------- 336 (506)
|+++++++|++.++++.|++++.++|.++|++. ++++++|+++|++++++++++++++|.++++..
T Consensus 281 p~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~---~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~ 357 (654)
T TIGR00926 281 QPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT---RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFL 357 (654)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEE
Confidence 999999999999999999999989999887642 248999999999999999999999998765300
Q ss_pred ------------------------------h-------------h-------------------c-------------C-
Q 010589 337 ------------------------------A-------------N-------------------H-------------H- 340 (506)
Q Consensus 337 ------------------------------~-------------~-------------------~-------------g- 340 (506)
. . . +
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (654)
T TIGR00926 358 QVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKI 437 (654)
T ss_pred EEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCCc
Confidence 0 0 0 0
Q ss_pred ---C------C------------------------C----C---------------------------------------
Q 010589 341 ---L------L------------------------D----D--------------------------------------- 344 (506)
Q Consensus 341 ---~------~------------------------~----~--------------------------------------- 344 (506)
+ . + +
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (654)
T TIGR00926 438 SYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDR 517 (654)
T ss_pred eEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeeccc
Confidence 0 0 0 0
Q ss_pred -------------------------CC--------------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 345 -------------------------PK--------------AIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 345 -------------------------~~--------------~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
++ ...++|+|||+|||++.++||++.+++++|+.+++||++
T Consensus 518 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~ 597 (654)
T TIGR00926 518 IDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPN 597 (654)
T ss_pred ccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHH
Confidence 00 023478899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
||+..+++|.++.++|+.+...+...-... +...-|.+++.++++..++|..+++.|
T Consensus 598 mks~~~a~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 598 MKSVLQALWLLTVAIGNLIVVVIAEFENFS----------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCh----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999987776443221 124557888999999999999988765
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=368.04 Aligned_cols=381 Identities=12% Similarity=0.136 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHH
Q 010589 37 GVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAI 116 (506)
Q Consensus 37 ~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai 116 (506)
..+++++.++++|+|+++||.+++++|+|+++|+ +|+++|+++|+++|+|++++|.+++++.+++||+++|+++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 3466788889999999999999999999988764 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcceeecCC-CCCchhH--HHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhh
Q 010589 117 GMVMSVLAFVFGSPLYVKLKP-GGSPLTR--LTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLD 193 (506)
Q Consensus 117 ~~~~~li~f~~~~~~~~~~~p-~~~pl~~--~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~ 193 (506)
+|+++++.+++++|.+.+..+ +.+|.++ ..+.+...+---. ... ..........+....+-
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~ 240 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLL---------VAT-------PALITVLFWKEWSVYAL 240 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHH---------HHH-------HHHHHHHHHHHHHHHHH
Confidence 999999999888877654211 1122211 0000000000000 000 00000000000000000
Q ss_pred hhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCcccc
Q 010589 194 KAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASL 272 (506)
Q Consensus 194 ~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~ 272 (506)
......... ...+...+..+.+||||+..++++++..++||+.|+|+.+.+.++ ++++|++++ ||++|++|+
T Consensus 241 ~~~~~~~~~------~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~ 313 (493)
T PRK15462 241 IVATIIGLG------VLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMF 313 (493)
T ss_pred HHHHHHHHH------HHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHH
Confidence 000000000 000000012345889999999999999999999999999876655 488999998 999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
|++||++|+++.|++.++|.++.+| +++| +.+.|+++|++++++|++++.+.... +.++| .+|
T Consensus 314 qslNp~~ii~l~P~~a~lw~~l~~~--~~~~--s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~~---------~~s 376 (493)
T PRK15462 314 QSINAFAVMLCGVFLAWVVKESVAG--NRTV--RIWGKFALGLGLMSAGFCILTLSARW----SAMYG---------HSS 376 (493)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHhcC--CCCC--CcHHHHHHHHHHHHHHHHHHHHHHhh----cCCCC---------CcC
Confidence 9999999999999999987666543 3344 89999999999999999998875421 11122 589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccCCCCCcCCCCC--Cc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAI-SMGNYIGTLVVTLVHKYTGSKNNWLPDRN--LN 429 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~-aig~~l~~~l~~~~~~~~~~~~~w~~~~~--ln 429 (506)
++|++..|+++++||++.+|+|+++++++||++++|++||+|+++. ++|+.+++.+.+.....+.. ++.+ -.
T Consensus 377 ~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~ 451 (493)
T PRK15462 377 LPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFD-----ASGAINYS 451 (493)
T ss_pred HHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----ccccccch
Confidence 9999999999999999999999999999999999999999999955 89999999998877532100 0000 01
Q ss_pred ccchhHHHHHHHHHHHHH-H-HHHHHhhhccccccCccc
Q 010589 430 RGRLEHYYWLVSGIQVIN-L-VYYVICAWFYTYKPLEEV 466 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~-~-~i~~~~~~~y~~~~~~~~ 466 (506)
...+..+|..++..+++. + +.++.+-.-+|+|||...
T Consensus 452 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (493)
T PRK15462 452 INAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRALA 490 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 124677888888777666 4 444444556677777644
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=376.38 Aligned_cols=357 Identities=37% Similarity=0.615 Sum_probs=245.4
Q ss_pred CchhhHHHHHHhhCCCCCCCCCCCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHH
Q 010589 1 MSQGLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFF 80 (506)
Q Consensus 1 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f 80 (506)
+++|+++|++++..+.. +.+.+.+.+++||+++++|+|++|||++++++|||++++ +++|+++|
T Consensus 11 ~~~G~~ll~l~~~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---~~~~~~~F 74 (372)
T PF00854_consen 11 YLLGHVLLTLSAIPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---DSRRDSFF 74 (372)
T ss_dssp HHHHHHH--HHHTSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---TTHHHHHH
T ss_pred HHHHHHHhHHHHhcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---hhhhhhhH
Confidence 35799999999955554 335678999999999999999999999999999999874 24899999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhcCcceeec-CCCCCchhH-HHHHHHHHHHhccc
Q 010589 81 NWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKL-KPGGSPLTR-LTQVIVAAFKKRKA 158 (506)
Q Consensus 81 ~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~-~p~~~pl~~-~~~vl~~a~~~~~~ 158 (506)
+||||++|+|+++++++++|+++++||+++|++++++|++++++|++++++|++. +|.++++.+ ..+++..+.+++..
T Consensus 75 ~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (372)
T PF00854_consen 75 NWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKL 154 (372)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCC
T ss_pred HHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999987 678888887 44555555555444
Q ss_pred cCCCCcccccccCCcccccccccccccccchhhhhhhhccccCccCCCCCCCccc-ccccccHHHHHHHHHHHHHHHHHH
Q 010589 159 IVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWR-LATVHRVEELKSIIRMLPVWAAGI 237 (506)
Q Consensus 159 ~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~-~~~~~~ve~~k~~~~~l~l~~~~i 237 (506)
..+......++.... .............+.+..... ....|. .++++++|+.|.+.+.++.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i 221 (372)
T PF00854_consen 155 AVPKGSSWLDWALFQ------YSERSIFGIIVFIRAAVIFFP-------EIFFWALFCQVQRVEELKALIRFLPIFLFWI 221 (372)
T ss_dssp CH-HHHHHHHHHHHH------HCCCCCCCCCCHHHHHHHHCC-------CHHHHTTTSSTTTHHHCCHHHCHHHCCCHHH
T ss_pred ccccchHHHHHhhhh------hhhhhhhhhhhhccchhhhhh-------hhhhcccCCccceeeeeeeeeeccccCeEEE
Confidence 332111100000000 000000000000110110000 001121 134677888888888889888888
Q ss_pred HHHHHHhhhhhHHHHHHHHhccCCCCc-ceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHH
Q 010589 238 LLVTASSHQHSFTIQQARTMNTHLTHS-FKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFA 316 (506)
Q Consensus 238 if~~~~~q~~s~~~~~~~~~~~~~~~g-f~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~i 316 (506)
+|+..+.|..+....|..++|+.++ + +++|+++++++|++++++++|++|++++|+.|+ +++ .+++.|+++|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~--~~~--~~~~~k~~~G~~ 296 (372)
T PF00854_consen 222 FYWQMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR--GIQ--PSPPQKFGIGMV 296 (372)
T ss_dssp HHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-H
T ss_pred EeeehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh--ccc--chhhhhhhHHHH
Confidence 8888888888777888888888887 6 999999999999999999999999999999983 333 389999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHH
Q 010589 317 INILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWI 396 (506)
Q Consensus 317 l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l 396 (506)
++.+++++.+.+|.+|...+.++| ..+.+|+++.|++++++|+++++++++.+++.+|+++++.+||+|+.
T Consensus 297 ~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~ 367 (372)
T PF00854_consen 297 FAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFA 367 (372)
T ss_dssp HHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 999999999999987776555544 56679999999999999999999999988888888888888888887
Q ss_pred HHHH
Q 010589 397 AISM 400 (506)
Q Consensus 397 ~~ai 400 (506)
..+.
T Consensus 368 ~~~~ 371 (372)
T PF00854_consen 368 LSAF 371 (372)
T ss_dssp HH--
T ss_pred Hhcc
Confidence 7654
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=329.75 Aligned_cols=364 Identities=12% Similarity=0.179 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHH
Q 010589 38 VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIG 117 (506)
Q Consensus 38 ~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~ 117 (506)
.++++++++++|+|+++||..++++|+|+++++ ||+++|+++|+++|+|+++||.++|++.+++|||++|++++++
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 466889999999999999999999999987653 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcceeecC--CCCCchhHHHHHHH---------HHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 118 MVMSVLAFVFGSPLYVKLK--PGGSPLTRLTQVIV---------AAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 118 ~~~~li~f~~~~~~~~~~~--p~~~pl~~~~~vl~---------~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
++++++.+.++++.+++.+ |+++|... .+.+. ......... .... .+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~------------------ 240 (489)
T PRK10207 183 LIIALLVYFACRGMVKDIGSEPDHKPMSF-SKLLLVLLGSVVMIFVCAWLMHN-VEVA--NL------------------ 240 (489)
T ss_pred HHHHHHHHHHcchhhcccCCCCCccchhh-hhHHHHHHHHHHHHHHHHHHHhh-hhHH--HH------------------
Confidence 9999998888877665432 32322211 01000 000000000 0000 00
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HhccCCCCcc
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQAR-TMNTHLTHSF 265 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~-~~~~~~~~gf 265 (506)
.+....+.... ...++..+. +..+++|.+..+.+++..++||+.|+|+.+.+.++.+ ++|++.. |+
T Consensus 241 ----~~~~~~~i~~~-------~f~~~~~~~-~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~ 307 (489)
T PRK10207 241 ----VLIVLSIVVTI-------IFFREAFKL-DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL-GF 307 (489)
T ss_pred ----HHHHHHHHHHH-------HHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc-ce
Confidence 00000000000 000000111 2345677777888888899999999999887776665 6777766 89
Q ss_pred eeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010589 266 KIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP 345 (506)
Q Consensus 266 ~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 345 (506)
++|++++|++|++.++++.|+.++++.++-+| ..+.++.+|+++|++++++|++++++.+... +..++
T Consensus 308 ~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r----~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~~----- 375 (489)
T PRK10207 308 SINPVSFQALNPFWVVVASPILAGIYTHLGSK----GKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQG----- 375 (489)
T ss_pred EECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCC-----
Confidence 99999999999999999999999865444333 2234899999999999999998776544210 11111
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCC
Q 010589 346 KAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPD 425 (506)
Q Consensus 346 ~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~ 425 (506)
.+|+||+++.|++.|+||++.+|++++++++.+|++++|++||+|+++.++|+.+|+.+++.+..... ..-+.
T Consensus 376 ----~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~---~~~~~ 448 (489)
T PRK10207 376 ----LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN---ITDPL 448 (489)
T ss_pred ----ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cccch
Confidence 47899999999999999999999999999999999999999999999999999999999987753210 00000
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 426 RNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 426 ~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
.....+..+|..+++.+++++++++++.|++++.
T Consensus 449 --~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 449 --ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred --hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112467899999999999999999988887554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=324.98 Aligned_cols=361 Identities=13% Similarity=0.198 Sum_probs=265.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++++.++++|.|+++|+..++++|+++++++ ++|+++|+++|+++|+|+++||.+++++.+++||+++|.++
T Consensus 101 ~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~ 177 (475)
T TIGR00924 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM---PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLA 177 (475)
T ss_pred cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc---ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 356677889999999999999999999999987642 26899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHH-----H--HHHHH----HHHhccccCCCCcccccccCCccccccccccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRL-----T--QVIVA----AFKKRKAIVPEDPRLLYRNGELDSVISVHGTL 183 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~-----~--~vl~~----a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l 183 (506)
++.++++++++++.++.+++.++++++.+.. . +.+.. ..+... ..... +.. ...
T Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~----------~~~ 242 (475)
T TIGR00924 178 AVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAW-LMHHV----VIA----------NIL 242 (475)
T ss_pred HHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHH-HHhcc----HHH----------HHH
Confidence 9999999888888887776544333332110 0 00000 000000 00000 000 000
Q ss_pred ccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHhccCCC
Q 010589 184 VHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTI-QQARTMNTHLT 262 (506)
Q Consensus 184 ~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~-~~~~~~~~~~~ 262 (506)
......+..++... ...+| ..+.+|+++..+++++++..++||++|+|+.+.+. ++++++|++++
T Consensus 243 -----~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~ 308 (475)
T TIGR00924 243 -----LMTVTLAVIIFFFR----LAFKP-----RLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML 308 (475)
T ss_pred -----HHHHHHHHHHHHHH----HHHhc-----cCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc
Confidence 00000000000000 00001 11224455666789999999999999999998765 45677998887
Q ss_pred CcceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010589 263 HSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLL 342 (506)
Q Consensus 263 ~gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~ 342 (506)
++++|+++++++|++.++++.|++++++.++.|| +++ .+...|+++|++++++|++.++++.. .+.++
T Consensus 309 -~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~--~~~--~~~~~k~~~G~~l~~~~~~~~~~~~~----~~~~~--- 376 (475)
T TIGR00924 309 -GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK--GKD--PTTPLKFTLGMLFCGASFLTFAASIW----FADAG--- 376 (475)
T ss_pred -ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC--CCC--CCcHHHHHHHHHHHHHHHHHHHHHHh----hcCCC---
Confidence 8999999999999999999999999876655554 222 27888999999999999999887631 11111
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 010589 343 DDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNW 422 (506)
Q Consensus 343 ~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w 422 (506)
.++|+||++++|+++|+||++.+|++++++++++|+++||+++|+|.+..++|+.+++.+........
T Consensus 377 ------~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~------ 444 (475)
T TIGR00924 377 ------GLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ------ 444 (475)
T ss_pred ------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 25899999999999999999999999999999999999999999999999999999999887664321
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 423 LPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 423 ~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
....+|..+++++++.+++++++.|++++
T Consensus 445 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 473 (475)
T TIGR00924 445 ---------GVTGVFGKIGLVTLLVGVVMALMVPWLNR 473 (475)
T ss_pred ---------chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13677888888888889988888887653
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=321.95 Aligned_cols=364 Identities=14% Similarity=0.220 Sum_probs=263.7
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
.+.+++++.++++|.|+++|+..++++|+|+++++ +|+++++++|+++|+|+++||.+++++.+++||+++|.+++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45577888999999999999999999999986642 67889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeec--CCCCCchhHH------HHHHHHHHHhcc-ccCCCCcccccccCCcccccccccccccc
Q 010589 116 IGMVMSVLAFVFGSPLYVKL--KPGGSPLTRL------TQVIVAAFKKRK-AIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 116 i~~~~~li~f~~~~~~~~~~--~p~~~pl~~~------~~vl~~a~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
+.++++++.+++.++.+++. +|+.+|.... ..+......... ...++. ... .
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------~--- 248 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEI----ARM------------A--- 248 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchH----HHH------------H---
Confidence 99999998887776655433 2322222110 000000000000 000000 000 0
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCcc
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHSF 265 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~gf 265 (506)
........... .....+ +.+.+|+|+.+..+++++..++||++|.|+.+.+..|+ +++|++.. |+
T Consensus 249 --~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~ 314 (500)
T PRK09584 249 --LGVVALGIVVI----------FGKEAF-AMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-GI 314 (500)
T ss_pred --HHHHHHHHHHH----------HHHHHh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc-ce
Confidence 00000000000 000001 12335677777778888999999999999999888776 45777776 89
Q ss_pred eeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010589 266 KIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP 345 (506)
Q Consensus 266 ~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 345 (506)
.+|+++++++|++.++++.|+.++++ +|+.++. ++.+|+++|++++++|++.+++... .+.++
T Consensus 315 ~i~~~~~~s~n~i~iil~~p~~~~~~----~~l~~r~---~~~~~~~~G~~l~~l~f~~l~~~~~----~~~~~------ 377 (500)
T PRK09584 315 AVEPEQYQALNPFWIMIGSPILAAIY----NKMGDRL---PMPHKFAIGMVLCSGAFLVLPLGAK----FANDA------ 377 (500)
T ss_pred EECHHHHHHHhHHHHHHHHHHHHHHH----HHhCcCC---CcHHHHHHHHHHHHHHHHHHHHHHH----hcCCC------
Confidence 99999999999999999999999854 4443332 5889999999999999999877541 11112
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCC
Q 010589 346 KAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPD 425 (506)
Q Consensus 346 ~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~ 425 (506)
..+|+||++++|+++|+||++++|++++++++++|+++||++||+|+++.++|+.+++.+...+..... ..
T Consensus 378 ---~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~-----~~- 448 (500)
T PRK09584 378 ---GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN-----VT- 448 (500)
T ss_pred ---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cc-
Confidence 268999999999999999999999999999999999999999999999999999999999876542110 00
Q ss_pred CCCc--ccchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 010589 426 RNLN--RGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPL 463 (506)
Q Consensus 426 ~~ln--~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~ 463 (506)
+.. .+.+..+|..+++++++.+++++++.|++++..+
T Consensus 449 -~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~ 487 (500)
T PRK09584 449 -DPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQ 487 (500)
T ss_pred -cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 1235788888898888888888888888765533
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-12 Score=135.10 Aligned_cols=299 Identities=13% Similarity=0.024 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...+...+++.|.++++ +|.++.++++++.++|..+|+.+++++.+..+|++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 4566777777788888888888888888888754 5889999999999999999999999998889999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+..+...+ .+++.. ++ ..+.+ +..+.
T Consensus 183 ~~~~~~~~~~~~~l~~----~~~~~~--------------~~--~~~~~--------------------------~~~~~ 216 (417)
T PRK10489 183 AAGTFITLLPLLRLPA----LPPPPQ--------------PR--EHPLR--------------------------SLLAG 216 (417)
T ss_pred HHHHHHHHHHHHhCCC----CCCCCc--------------cc--ccchH--------------------------HHHHH
Confidence 8777766554433221 111100 00 00000 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
.+ .+-..+.+...+ +. ... +..+....+.......+. .+.. . .-.+++..
T Consensus 217 ~~----------------------~~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~p~~~~~~-~g~~-~--~~~g~~~~ 266 (417)
T PRK10489 217 FR----------------------FLLASPVVGGIA-LL--GGL-LTMASAVRVLYPALADEV-WQMG-A--AQIGLLYA 266 (417)
T ss_pred HH----------------------HHHcChHHHHHH-HH--HHH-HHHHHhHHHhhHHHHHhc-cCCC-h--hHhHHHHH
Confidence 00 000001111111 11 111 111111112211111110 1110 0 01234455
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
...+..++..++..+ +.+|. .+.+.+..+.++.+++++..+.. -+++
T Consensus 267 ~~~~g~~ig~~~~~~----l~~~~-------~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~ 313 (417)
T PRK10489 267 AVPLGAALGALTSGW----LAHSA-------RPGLLMLLSTLGSFLAVGLFGLM----------------------PMWI 313 (417)
T ss_pred HHHHHHHHHHHHHHH----hhhcc-------CcchHHHHHHHHHHHHHHHHHcc----------------------chHH
Confidence 555666665555544 22221 12334566777777666554431 1344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
+.+...++.+++.....+...++..+..|++.||..+|++.....+|..+|+.+...+.+. ++ ..
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~-------~g--------~~ 378 (417)
T PRK10489 314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM-------MT--------PV 378 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH-------hc--------hh
Confidence 5566778888998888888889999999999999999999999999999999888777632 21 13
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccC
Q 010589 435 HYYWLVSGIQVINLVYYVICAWFYTYKPL 463 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~~~~~y~~~~~ 463 (506)
..++..++..++..++.....+++|.++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 34555555555555555555555444333
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-12 Score=130.66 Aligned_cols=288 Identities=15% Similarity=0.136 Sum_probs=171.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|.+.|...+++.|.++++ +|++++++++.+.++|..+||.+++++. ++||++.|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 4677888888899999999999999999988754 6999999999999999999999999998 78999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++..++..+..++. +++.+ +. +..+ .+..
T Consensus 171 ~~~~~~~~i~~~~~~~~~---~~~~~---------------~~---~~~~-------------------------~~~~- 203 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY---KLSTV---------------RT---PVRE-------------------------GMTR- 203 (400)
T ss_pred HHHHHHHHHHHHHhCCcc---ccccc---------------ch---hhHH-------------------------HHHH-
Confidence 877666554433322210 00000 00 0000 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
. ..+ |+++.. .+....++..+.|.........++. .+ . ..-.+++..
T Consensus 204 ----------------~--------~~~-~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~---~~-~-~~~~g~l~~ 250 (400)
T PRK11646 204 ----------------V--------LRD-KRFVTY---VLTLTGYYMLAVQVMLMLPIMVNDI---AG-S-PSAVKWMYA 250 (400)
T ss_pred ----------------H--------HcC-chHHHH---HHHHHHHHHHHHHHHHhhhhhHHhh---cC-C-chHHHHHHH
Confidence 0 001 112211 1112223333333322222211111 11 0 001133344
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
++.+..+.+.....+ +..|+. +..+++..|.++.+++++..+... +.+
T Consensus 251 ~~~~~~~~~~~~~~~----~~~~r~------~~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~ 298 (400)
T PRK11646 251 IEACLSLTLLYPIAR----WSEKRF------RLEHRLMAGLLIMSLSMFPIGMVS----------------------NLQ 298 (400)
T ss_pred HHHHHHHHHHHHHHH----HHHHhc------chhHHHHHHHHHHHHHHHHHHHhh----------------------hHH
Confidence 444433332222233 222211 233456777777777766554421 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
+.+...++.++|+....|...+.+.+.+|++.||.++|++.+...+|..+|+.+.+.+.+...+ .+ ...
T Consensus 299 ~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~---------~~--~~~ 367 (400)
T PRK11646 299 QLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA---------LN--QPE 367 (400)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh---------cC--Ccc
Confidence 4555567889999999999999999999999999999999999999999999888877643210 00 114
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010589 435 HYYWLVSGIQVINLVYYV 452 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~ 452 (506)
..|+..++++++..+...
T Consensus 368 ~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 368 LPWMMLGIIGLITLLALY 385 (400)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 555555556665555543
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-11 Score=125.05 Aligned_cols=284 Identities=16% Similarity=0.165 Sum_probs=170.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.+.+-|...+++.|.++++ +|+++++++..+.++|..++|.+++.+.+++||++.|++.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 169 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAI 169 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHH
Confidence 5777888888999999988899999999998764 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++..+......++ +|+.++ .+ .+ +.
T Consensus 170 ~~~~~l~~~~~~~~~~~----~~~~~~--------------------~~----~~-----------------------~~ 198 (390)
T PRK03545 170 GGGALITLLLLIKLLPL----LPSEHS--------------------GS----LK-----------------------SL 198 (390)
T ss_pred HHHHHHHHHHHHHhCCC----CCCCCc--------------------ch----HH-----------------------HH
Confidence 87666655443332221 111000 00 00 00
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTI-QQARTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~-~~~~~~~~~~~~gf~ip~~~~~ 273 (506)
.. . + .+ |.+...+.+ ..++...+....+... +..+....+. ...+++.
T Consensus 199 ~~--------------~---~-----~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~g~s~-----~~~~~~~ 247 (390)
T PRK03545 199 PL--------------L---F-----RR-PALVSLYLL---TVVVVTAHFTAYSYIEPFVQQVAGLSE-----NFATLLL 247 (390)
T ss_pred HH--------------H---H-----hC-cHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cHHHHHH
Confidence 00 0 0 00 112111111 1111111111112111 1111111110 0113333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
....+..++..++..+ +.+|. ..+++..+..+.++++...... ..+.
T Consensus 248 ~~~~~~~~~g~~~~g~----l~dr~--------~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~ 294 (390)
T PRK03545 248 LLFGGAGIIGSVLFSR----LGNRH--------PSGFLLIAIALLLVCLLLLLPA---------------------ANSE 294 (390)
T ss_pred HHHHHHHHHHHHHHHH----Hhhcc--------chhHHHHHHHHHHHHHHHHHHH---------------------hchH
Confidence 4444444555554444 33332 1234666666666655433221 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccch
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRL 433 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~ 433 (506)
++++...++.+++.....+...+.+.+.+|+ .++.++|++.....+|..+|+.+.+.+.+. + .+
T Consensus 295 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-------~--------g~ 358 (390)
T PRK03545 295 WHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-ATDVAMALFSGIFNIGIGAGALLGNQVSLH-------L--------GL 358 (390)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--------Ch
Confidence 5666778889999988888888888888885 789999999988899999999888777632 1 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 010589 434 EHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 434 ~~~~~~la~l~~l~~~i~~~~~ 455 (506)
...|+..+++.++++++++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 359 SSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777777777777765544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-12 Score=132.77 Aligned_cols=308 Identities=15% Similarity=0.063 Sum_probs=164.0
Q ss_pred hHHHHHH-HHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 36 LGVLYIS-LLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 36 ~~~~~~~-l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
.+.+++. ..+.++|.|..-+...+.+.+.++ + +|.++.++++.+.++|..+++.+.+++.+.+||++.|.+.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-R------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-h------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 4445443 356688888765555566677663 2 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+..++.++.-.. ++..+... +.. ..+... ... . ...+..+.
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~~----------~~~-~~~~~~----~~~-----------~---~~~~~~~~ 228 (455)
T TIGR00892 180 GGLLLHCCVCGALMRPVGPS--QRVSKSKS----------KEG-LPPDGS----TKK-----------L---SKKSTAEK 228 (455)
T ss_pred HHHHHHHHHHHHHhCCCCcc--cccccccc----------ccc-CCCCCc----ccc-----------c---cccchhhh
Confidence 88777665554444331000 00000000 000 000000 000 0 00000000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
.. ....+++++ + |.++ .......+....+....+.+..... +.... . ...+.+.+
T Consensus 229 ~~-----------~~~~~~~~~-----~-~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s-~--~~~g~~~~ 283 (455)
T TIGR00892 229 IN-----------RFLDFSLFT-----H-RGFL---VYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD-E--YEAAFLLS 283 (455)
T ss_pred hh-----------hhcchHHhc-----C-chHH---HHHHHHHHHHHHccchHHHHHHHHH--HcCCC-H--HHHHHHHH
Confidence 00 000000000 0 1222 1112222222333222222221111 11111 0 11234555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
+..+..++..|+..++ .+|...+. .....+..++++.+++++..... .+.+
T Consensus 284 ~~~~~~~~~~~~~g~l----~d~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~----------------------~~~~ 334 (455)
T TIGR00892 284 IIGFVDIFARPSCGLI----AGLKWIRP---HVQYLFSFALLFNGLTHLLCALA----------------------GDYT 334 (455)
T ss_pred HHHHHHHHHHHHHHHH----hcccccCH---HHHHHHHHHHHHHHHHHHHHHHh----------------------chHH
Confidence 5666666666666653 22211110 11112333444444444332221 2455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
+++...++.+++.....+...+.+.+.+|++.++..+|++.....+|+.+++.+...+.+.. . ++.
T Consensus 335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-------g-------~~~ 400 (455)
T TIGR00892 335 GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT-------K-------NYK 400 (455)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-------C-------Ccc
Confidence 66777788999999999999999999999999999999999999999999998887665321 0 134
Q ss_pred HHHHHHHHHHHHHHH
Q 010589 435 HYYWLVSGIQVINLV 449 (506)
Q Consensus 435 ~~~~~la~l~~l~~~ 449 (506)
..|+..+++.+++++
T Consensus 401 ~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 401 YIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHHHHHHH
Confidence 556666666555544
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-10 Score=119.04 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...+...+++.|.++++ +|+++++++..+.++|..+++.+++++.++.+|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 5778888999999999999999999999998754 6999999999999999999999999998999999999988
Q ss_pred HHHHHHHHHHHHh
Q 010589 115 AIGMVMSVLAFVF 127 (506)
Q Consensus 115 ai~~~~~li~f~~ 127 (506)
++..++..+..++
T Consensus 155 ~~~~~~~~~~~~~ 167 (399)
T TIGR00893 155 GVLGIIWGVLWLK 167 (399)
T ss_pred HHHHHHHHHHhhh
Confidence 8776665554433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-10 Score=119.81 Aligned_cols=269 Identities=12% Similarity=0.044 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+...+...+.+.|.++++ +|.+++++.+...++|..++|.+++++.++.+|++.|++.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 4666778888889999988888888899998754 5778888888888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+......++. ++.+ +++ .+ .. +..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~----~~~~--------------~~~----~~----~~--------------------~~~~~ 207 (406)
T PRK15402 174 AALAALSFFGLWRAMPET----AGRV--------------GEK----LS----LK--------------------ELGRD 207 (406)
T ss_pred HHHHHHHHHHHHHhCCCC----Cccc--------------ccc----cc----HH--------------------HHHHH
Confidence 877776655433322211 1000 000 00 00 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~~ 273 (506)
.+. . + .+ |+++.. .+...+....+....+..... .+.. ... .. ..++..
T Consensus 208 ~~~-------------~---~-----~~-~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~--g~~-~~--~~g~~~ 257 (406)
T PRK15402 208 YKL-------------V---L-----KN-RRFVAG---ALALGLVSLPLLAWIALSPVILISGE--QLS-SY--EYGLLQ 257 (406)
T ss_pred HHH-------------H---H-----cC-cHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHh--CCC-HH--HHHHHH
Confidence 000 0 0 00 112211 111111111111111111111 1111 110 00 011222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
..-.+..++..++..+ +.+|. ...+.+.+|.++.+++.+..+.... .. ..++
T Consensus 258 ~~~~~~~~~g~~~~g~----l~~r~-------~~~~~~~~~~~~~~~g~~~~~~~~~-------~~----------~~~~ 309 (406)
T PRK15402 258 VPVFGALIAGNLTLAR----LTSRR-------PLRSLIRMGLWPMVAGLLLAALATV-------IS----------SHAY 309 (406)
T ss_pred HHHHHHHHHHHHHHHH----HHHhc-------CHHHHHHHHHHHHHHHHHHHHHHHH-------cc----------cccH
Confidence 2222233333444333 33332 2333466777777777776655320 00 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
+|++...++.++|+....+........ ++++.+|.+.+++.+...++..+|+.+.+.+..
T Consensus 310 ~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~ 369 (406)
T PRK15402 310 LWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL 369 (406)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 778888899999999988877776654 455899999999999999999999888877653
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-11 Score=124.20 Aligned_cols=293 Identities=14% Similarity=0.109 Sum_probs=167.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.+. -|...+.+.|+++++ +|+.+++++..+.++|.++++.+.+++.+..+|++.|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 466777788888887664 466777788887654 6899999999999999999999999999889999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++..+..+...++- .++..++ +. .+ . .+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~--~~~~~~~--------------~~----~~----~-----------------------~~~ 211 (408)
T PRK09874 179 ASVLFLCFLVTLFCIREN--FQPVSKK--------------EM----LH----M-----------------------REV 211 (408)
T ss_pred HHHHHHHHHHHHHHhccC--cccccch--------------hh----hH----H-----------------------HHH
Confidence 887766655433322210 0011000 00 00 0 000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
... . ++ ++++. .+.....++........+.+.....+...+.. ....-.+.+..
T Consensus 212 ~~~-----------------~-----~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~ 265 (408)
T PRK09874 212 VTS-----------------L-----KN-PKLVL--SLFVTTLIIQVATGSIAPILTLYVRELAGNVS-NIAFISGMIAS 265 (408)
T ss_pred HHh-----------------C-----cC-CchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHH
Confidence 000 0 00 11111 11111122222222222222211111111100 00000112222
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
+..+..++..|+..+ +.+|.+ +.+.+..++++.+++++..... .+.+
T Consensus 266 ~~~l~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 312 (408)
T PRK09874 266 VPGVAALLSAPRLGK----LGDRIG-------PEKILITALIFSVLLLIPMSFV----------------------QTPL 312 (408)
T ss_pred HHHHHHHHHHHHHHH----HHhccc-------cchhHHHHHHHHHHHHHHHHHh----------------------ccHH
Confidence 333444445554444 344432 2233555666555555443321 1344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
++....++.++++....|...+.+.+.+|++.+|..++.+.....+|..+|+.+...+.+. . .+.
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-------~--------g~~ 377 (408)
T PRK09874 313 QLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-------Y--------GFR 377 (408)
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-------c--------chh
Confidence 4556668889999999999999999999999999999999999999999999888776531 1 135
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 010589 435 HYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~~~ 455 (506)
..|++.+++++++.++.+...
T Consensus 378 ~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 378 AVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777766655443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-10 Score=118.36 Aligned_cols=85 Identities=19% Similarity=0.331 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...|...+++.|.++++ +|++++++++.+.++|..+++.+++.+.+..+|++.|.+.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 4677788889999999999999999999999754 6999999999999999999999999998999999999987
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..++..++.
T Consensus 176 ~~~~~~~~~~~ 186 (406)
T PRK11551 176 GVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHH
Confidence 77655554443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-10 Score=121.35 Aligned_cols=266 Identities=16% Similarity=0.142 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+++.+++...+++++.+++.|...+++.++.+++ +..++.++.....|+.-++||.++|.+....|-.+.|.+.
T Consensus 102 ~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~in 175 (524)
T PF05977_consen 102 SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLIN 175 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 6788888889999999999999999999999865 5899999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++++.+...++.. +++..|-++..+-++.. .+++
T Consensus 176 alsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G------------------------------------~ryv-- 214 (524)
T PF05977_consen 176 ALSFLISILALLRWKPPP---PPSSLPRERFFSALREG------------------------------------LRYV-- 214 (524)
T ss_pred HHHHHHHHHHHHHccccc---cccccchhhhhhhHHHH------------------------------------HHHH--
Confidence 998888766554443321 11111100000000000 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~gf~ip~~~~~ 273 (506)
...|.+..++.. ..+|.....-....+.... +..+..- .-.+.+.
T Consensus 215 --------------------------~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a~~~l~~~a-----~~yGll~ 260 (524)
T PF05977_consen 215 --------------------------RSSPPLRSVLLR---SFLFNLFASAVWALLPLFARDVLGGGA-----SGYGLLL 260 (524)
T ss_pred --------------------------hcchHHHHHHHH---HHHHHHhhhHHHHhhhHHHHHHhCCcH-----HHHHHHH
Confidence 000112211111 1112211111112222222 2222110 0113455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
+.-.+..++..-+..+ .+|.. +..+-+..+.++.+++++..++. -+.
T Consensus 261 a~~gvGai~Gal~~~~-----l~~~~------~~~~lv~~~~~~~a~~~~~lal~----------------------~~~ 307 (524)
T PF05977_consen 261 AAFGVGAILGALLLPR-----LRRRL------SSRRLVLLASLLFALALLLLALS----------------------PSF 307 (524)
T ss_pred HHHHHHHHHHHHHHHH-----hhccc------CcchhhHHHHHHHHHHHHHHhcc----------------------hHH
Confidence 5555555555444333 33321 23344667777777777666552 245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
|..++..++.|++.........+.+-+.+|++++|+.+++|......+..+|..+.+.+.+
T Consensus 308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 308 WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788999999999999999999999999999999999998888888888887777663
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-10 Score=120.88 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...|...+++.|.++++ +|.++++++..+.++|..++|.+++++.++.||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 4666788899999999999999999999988654 6899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
....+++.+.....
T Consensus 171 ~~~~~l~~~~~~~~ 184 (471)
T PRK10504 171 IPVGIIGAIATLML 184 (471)
T ss_pred HHHHHHHHHHHHHh
Confidence 77666655554443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-11 Score=124.89 Aligned_cols=262 Identities=13% Similarity=0.076 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+.+.+.+.|...+...|.++++ +|.+++++++...|+|..++|.+++++.+ .||+..|.++
T Consensus 95 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~ 167 (395)
T PRK10054 95 NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLA 167 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHH
Confidence 3455555566667777777888888888888754 69999999999999999999999999875 7999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++++...+..++. ++++.++-++ . . +.
T Consensus 168 ~~~~~i~~i~~~~~~~~~--~~~~~~~~~~------------~----------~------------------------~~ 199 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRS--EKAIATETGS------------V----------W------------------------SP 199 (395)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccchhh------------h----------h------------------------hh
Confidence 887777655433222211 1111000000 0 0 00
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh-ccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTM-NTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~-~~~~~~gf~ip~~~~~ 273 (506)
... . + .|+++. +.....++...+....+.....-... +.... +...+.+.
T Consensus 200 ~~~-----------------~-----~-~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~ 250 (395)
T PRK10054 200 SVL-----------------L-----Q-DKALLW---FTCSGFLASFVSGAFASCISQYVMVVADSDFA---EKVVAVVL 250 (395)
T ss_pred hhh-----------------c-----c-CceehH---HHHHHHHHHHHHHHhhhhHHHHHHHhcccchH---HHHHHHHH
Confidence 000 0 0 011211 11111221211211111111110111 11110 00113344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
..+.+..+.+.++..+ +.+|. ++.+.+..|+++.+++++...... .++
T Consensus 251 ~~~~~~~~~~~~~~g~----~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~---------------------~~~ 298 (395)
T PRK10054 251 PVNAAMVVSLQYSVGR----RLNAA-------NIRPLMTAGTLCFVIGLVGFIFSG---------------------NSL 298 (395)
T ss_pred HhhhhheeeehhHHHH----HHccC-------CchhHHHHHHHHHHHHHHHHHHcc---------------------hHH
Confidence 5555555555444433 23332 234456677777777766554311 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+....++.++||....|...+.+.+.+|+++++.+.+... ...+|..+|+.+...+.
T Consensus 299 ~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~ 357 (395)
T PRK10054 299 LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL 357 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH
Confidence 334456789999999999999999999999999999988654 34467777777776665
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-10 Score=115.79 Aligned_cols=262 Identities=17% Similarity=0.210 Sum_probs=181.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.+...+...+++.|.++++ +|...+++++.+.++|..+++.+.+.+.++.+|++.|.+.
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 159 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLIL 159 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4677888899999999999999999999999875 5999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+...+..| .
T Consensus 160 ~~~~~~~~~~~~~~~~-------------~-------------------------------------------------- 176 (352)
T cd06174 160 AILGLLLALLLLFLLR-------------L-------------------------------------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------H--------------------------------------------------
Confidence 8877776655433210 0
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~~ 273 (506)
++ .+.+....++..+.......... .+..+.+ . ...+++.
T Consensus 177 -------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~ 217 (352)
T cd06174 177 -------------------------------LL---LLALAFFLLSFGYYGLLTYLPLYLQEVLGLS---A--AEAGLLL 217 (352)
T ss_pred -------------------------------HH---HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC---H--HHHHHHH
Confidence 00 01111111111111111111111 1111110 0 1124556
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQ-RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~-ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
....+..++..++..++ .+|.+ +.+ .+.++.++..++++..... .+
T Consensus 218 ~~~~~~~~i~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~----------------------~~ 264 (352)
T cd06174 218 SLFGLGGILGALLGGLL----SDRLG-------RRRLLLLIGLLLAALGLLLLALA----------------------PS 264 (352)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHH-------hhhHHHHHHHHHHHHHHHHHHHh----------------------cc
Confidence 66677777777766653 44432 122 4677888888877766542 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGR 432 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~ 432 (506)
.++.....++.++++....+...+++.+..|++.|+..+|++.....++..+++.+.....+.. +
T Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~---------------~ 329 (352)
T cd06174 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG---------------G 329 (352)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------C
Confidence 5677888999999999999999999999999999999999999999999999998887765311 1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010589 433 LEHYYWLVSGIQVINLVYYV 452 (506)
Q Consensus 433 ~~~~~~~la~l~~l~~~i~~ 452 (506)
+...|++.+++.+++.+++.
T Consensus 330 ~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 330 YGGVFLILAALALLAALLLL 349 (352)
T ss_pred cchHHHHHHHHHHHHHHHhe
Confidence 24556666777766665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=117.16 Aligned_cols=269 Identities=11% Similarity=0.039 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.|...|...+++.|.++++ +|+++++++..+.++|.++++.+++++.++.||++.|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5788888999999999999999999999999765 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+..+..+.+ ++++.+ ..+.+++ ... ...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~---~~~~~~----------------~~~~~~~----~~~-------------------~~~~~ 202 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP---ELAASE----------------IQALSNA----VLR-------------------DTREG 202 (365)
T ss_pred HHHHHHHHHHHHhcccc---cCCCcc----------------ccccchh----HHH-------------------HHHhH
Confidence 87776665544333211 000000 0000000 000 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHH-HHhccCCCCcceeCcccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQH-SFTIQQA-RTMNTHLTHSFKIPPASL 272 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~-s~~~~~~-~~~~~~~~~gf~ip~~~~ 272 (506)
.+ +.-..|.+. .+.....++...+.... +...... +..+.+ . ...+.+
T Consensus 203 ~~----------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~ 252 (365)
T TIGR00900 203 IK----------------------FVLKNPLLR---TLLLLALLFNLVFAPAIVALFPYVQSKYLGRG---S--THYGWV 252 (365)
T ss_pred HH----------------------HHHcCcHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc---h--HHHHHH
Confidence 00 000001122 12222223333222222 1212111 111111 0 012334
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
.....+..++..++..+ +.+|.+ +.+-+..++++.+++++...... + +
T Consensus 253 ~~~~~~~~~~~~~~~~~----l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~ 300 (365)
T TIGR00900 253 LAAFGLGALLGALLLGL----LGRYFK-------RMALMTGAIFVIGLAILVVGLTP--------------------P-N 300 (365)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhc-------hhHHHHHHHHHHHHHHHHHHhhc--------------------h-h
Confidence 44455555555555554 333321 22234455666666655544311 2 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.++.+...++.+++.....+...++..+..|++.||..+|++.....++..+++.+...+.
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~ 361 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777899999999999999999999999999999999999999999999988877664
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.3e-10 Score=114.51 Aligned_cols=277 Identities=13% Similarity=0.071 Sum_probs=164.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+...+++...+.++|.+...++..+.+.|.++++ +|.++++++..+.++|..+|+.+++++.+++||+..|.++
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4556778888999999999999999999998755 5889999999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++.++ +.++. |+..+ ++ .++.
T Consensus 185 ~~~~~~~~~---~~~~~-----~~~~~-------------~~----~~~~------------------------------ 209 (399)
T PRK05122 185 MLLALLGLL---LARPR-----PAVPP-------------VK----GERL------------------------------ 209 (399)
T ss_pred HHHHHHHHH---HHhcC-----CCCCC-------------CC----ccch------------------------------
Confidence 654433322 22211 11100 00 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
++ .+..|+.......+ .++...+....+....... +.+.. .......
T Consensus 210 ----------------~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~ 256 (399)
T PRK05122 210 ----------------PF-------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYA--ARGWD-----GAALALT 256 (399)
T ss_pred ----------------hH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--Hcccc-----cchHHHH
Confidence 00 01111111111111 1111122222222111111 11110 1122333
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
...+..++..++..+ +.+|.+ +.+.+..+.++.+++++..... .+.+
T Consensus 257 ~~~~~~~~~~~~~g~----l~~r~~-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 303 (399)
T PRK05122 257 LFGVAFVGARLLFGN----LINRLG-------GLRVAIVSLLVEILGLLLLWLA----------------------PSPW 303 (399)
T ss_pred HHHHHHHHHHHHHHH----HHHHhc-------cHHHHHHHHHHHHHHHHHHHHh----------------------ccHH
Confidence 444444444455444 344432 2234566777777776555431 1345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
++++..++.+++.....|.....+.+..|++.||..+|++.....+|..+++.+...+.+. . ++.
T Consensus 304 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-------~--------g~~ 368 (399)
T PRK05122 304 MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-------F--------GYP 368 (399)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------c--------CHH
Confidence 5667788999999988888888888999999999999999999999988887776655421 1 135
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010589 435 HYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~ 453 (506)
..|+..+++++++.++...
T Consensus 369 ~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 369 SIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666665544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-10 Score=116.33 Aligned_cols=281 Identities=14% Similarity=0.063 Sum_probs=169.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+.+.+..-|...++..+ +. ++|+..++......++|..++|.+++++.+++||+..|.+.
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 56777777777888887777877776532 21 25778899999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++.++.+ ...+. .+|+++ +. . .... .. ..+.+
T Consensus 165 ~~~~~~~~~~~-~~~~~---~~~~~~---------------~~-~-~~~~-----~~-----------------~~~~~- 200 (382)
T TIGR00902 165 TAGLAFMLIGF-LIKPT---IPPKDA---------------IP-E-DESQ-----GD-----------------SAFIA- 200 (382)
T ss_pred HHHHHHHHHHH-HcCCC---CCCCcc---------------cc-c-cccc-----cc-----------------hhHHH-
Confidence 65533333222 22211 011100 00 0 0000 00 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
++ . .|+++ .+.+...+++..+.+..+.....-++. ... . .-.+.+..
T Consensus 201 -------------------~l-----~-~~~~~---~~l~~~~l~~~~~~~~~~~~~~~l~~~--g~s-~--~~~g~l~~ 247 (382)
T TIGR00902 201 -------------------LL-----K-NPMNL---RFLAAVCLIQGAHAAYYGFSAIYWQAA--GIS-A--SATGLLWG 247 (382)
T ss_pred -------------------HH-----c-ChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCC-H--hHHHHHHH
Confidence 00 0 12232 222333444455555444332221111 110 0 01133444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
++.+..++..++.++ +.+|. ++.+-+.+|.++.++.++..+.. .++|
T Consensus 248 ~~~~~~i~~~~~~~~----l~~r~-------g~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~ 294 (382)
T TIGR00902 248 IGVLAEIIIFAFSNK----LFQNC-------SARDLLLISAIACVGRWAIIGAI----------------------EAFP 294 (382)
T ss_pred HHHHHHHHHHHHhHH----HHhhC-------CHHHHHHHHHHHHHHHHHHHHhH----------------------hhHH
Confidence 555555555555554 34443 34445778888888887766552 2455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccch
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYW-IAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRL 433 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~-l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~ 433 (506)
+++..-+++++++.+..+....++.+. |++.++..++++. ...++|..+++.+++.+.+. +.
T Consensus 295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~-------~g--------- 357 (382)
T TIGR00902 295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT-------LG--------- 357 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc---------
Confidence 555555999999999999999999988 9999999999986 57788888888888877642 21
Q ss_pred hHHHHHHHHHHHHHHHH
Q 010589 434 EHYYWLVSGIQVINLVY 450 (506)
Q Consensus 434 ~~~~~~la~l~~l~~~i 450 (506)
...|+..++++++++++
T Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35577777777655433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=122.18 Aligned_cols=88 Identities=17% Similarity=0.309 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHh---hhhccccccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVV---VYIQDNVGWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~---~~l~~~~g~~~~F 111 (506)
..+.++++..+.++|.|...+...++++|.++++ +|..++++++.+.++|.++++.++ +.+.+..+|++.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 3567888999999999999999999999999865 599999999999999999999998 7777889999999
Q ss_pred hhhHHHHHHHHHHHHhc
Q 010589 112 GIPAIGMVMSVLAFVFG 128 (506)
Q Consensus 112 ~i~ai~~~~~li~f~~~ 128 (506)
++.++..++.++..++.
T Consensus 200 ~~~~~~~~~~~~~~~~l 216 (481)
T TIGR00879 200 GLQLIPAGLLFLGLFFL 216 (481)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99776666555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-10 Score=121.13 Aligned_cols=312 Identities=13% Similarity=0.057 Sum_probs=165.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|+..|...+.+.+.+.+++ +|.++++++..+.++|..+||.+++++.+++||++.|++.
T Consensus 93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~ 167 (495)
T PRK14995 93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN 167 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 57888899999999999998888888888875432 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhH-HH-----HHHHHHHHhccccCCCCcccccccCCcccccccccccccccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTR-LT-----QVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQ 188 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~-~~-----~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~ 188 (506)
....++.+++.....+.-...+.+..+... +. -.+..+.+..... ..+. .... .....+... .
T Consensus 168 ~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~----~~~~~~~~~---l 236 (495)
T PRK14995 168 VPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKG-FLSL---WVTS----LTLLTGALL---L 236 (495)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcccc-CCch---HHHH----HHHHHHHHH---H
Confidence 766666555433332221111111111100 00 0011111110000 0000 0000 000000000 0
Q ss_pred hhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeC
Q 010589 189 FKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIP 268 (506)
Q Consensus 189 ~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip 268 (506)
..+..+-. .......++++++. |.+......... ....+.-....+..+-+... ... . ..
T Consensus 237 ~~f~~~e~-------~~~~p~~~~~lf~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~lq~v~-g~s-~--~~ 296 (495)
T PRK14995 237 GLFIRTQL-------AASRPMIDMRLFTH------RIILSGVVMAMT---AMITLVGFELLMAQELQFVH-GLS-P--LE 296 (495)
T ss_pred HHHHHHHh-------cCCCCCcCHHHhCC------cccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHc-CCC-H--HH
Confidence 00000000 00001112222221 112111111111 11111100011111111111 100 0 11
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
.+.+.....+...+..|+..+ +.+|.+ +.+-+..|+++.+++++...... .
T Consensus 297 ag~~~~~~~~~~~~~~~~~g~----l~~r~g-------~~~~~~~g~~~~~~~~~~l~~~~---------~--------- 347 (495)
T PRK14995 297 AGMFMLPVMVASGFSGPIAGI----LVSRLG-------LRLVATGGMALSALSFYGLAMTD---------F--------- 347 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHcC-------chHHHHHHHHHHHHHHHHHHHhc---------C---------
Confidence 233444455566666666665 445543 22235668887777776554321 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
..+.++..+..++.|+|-.+..+.....+.+.+|++.++..++++.+...+|..+|..+.+.+
T Consensus 348 -~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 348 -STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred -CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444566778899999999998999999999999999999999999888888877666544
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.8e-10 Score=114.32 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+...|...++..|. . + +|++.++...++.++|..+||.+++++.+++||+..|++.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~-~------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~ 164 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q-K------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL 164 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH-H-h------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 477777778888998999999888777764 2 1 4677788888888999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++..+... ..++ .+|+++ +++. ..+ .. .++.
T Consensus 165 ~~~~~~~~~~~~-~~~~---~~~~~~--------------~~~~--~~~-------~~----------------~~~~-- 199 (382)
T PRK11128 165 TAGVASMLLGQL-LRPT---IMPQGE--------------SRQQ--ESA-------GW----------------PAWK-- 199 (382)
T ss_pred HHHHHHHHHHHH-ccCC---CCCccc--------------cccc--ccc-------cc----------------chHH--
Confidence 765554443322 2211 111110 0000 000 00 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccch
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~~ 274 (506)
+.-..|+++.+ .+...+++..+.+..+......++. +.. +-..+.+..
T Consensus 200 ------------------------~i~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~--g~s---~~~~g~~~~ 247 (382)
T PRK11128 200 ------------------------ALLKEPTVWRF---LLCVSLLQGSHAAYYGFSAIYWQAA--GYS---ASTIGYLWS 247 (382)
T ss_pred ------------------------HHHcChhHHHH---HHHHHHHHHHhHhHHHHHHHHHHHC--CCC---HhHHHHHHH
Confidence 00001223222 2222233333333333222221111 110 001244555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
++.+..++..++.++ +.+|. ...+.+.+++++.+++++.++.. .+.|
T Consensus 248 ~~~~~~~~~~~~~g~----l~~r~-------~~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~ 294 (382)
T PRK11128 248 LGVVAEVLIFAFSNR----LFRRW-------SARDLLLLSAICGVVRWGLMGST----------------------TALP 294 (382)
T ss_pred HHHHHHHHHHHHHHH----HHHHC-------CHHHHHHHHHHHHHHHHHHHHhh----------------------hhHH
Confidence 666666666565555 44543 23344677777777776655442 2456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhc
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYW-IAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~-l~~aig~~l~~~l~~~~~~ 414 (506)
+.++..++.++++.+..+....++.++. ++.++.+++++. +..++|..+|+.+.+...+
T Consensus 295 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 295 WLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677789999999999999999988875 445688899876 5667777788877777653
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.8e-10 Score=116.97 Aligned_cols=84 Identities=12% Similarity=0.219 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc-ccchhhhhh
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV-GWGLGFGIP 114 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i~ 114 (506)
.+.+++...+.+++.|..-|.....+.+.++++ +|.+++++++.+.++|..+++.+++++.+.. ||++.|.+.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 556788889999999999999999999998765 6999999999999999999999999999884 999999988
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..++..++.
T Consensus 205 ~~~~~~~~~~~ 215 (465)
T TIGR00894 205 GIVGCAWSLLW 215 (465)
T ss_pred hHHHHHHHHHH
Confidence 87666554443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-10 Score=132.76 Aligned_cols=281 Identities=12% Similarity=-0.005 Sum_probs=167.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+++.|...+++.|.++++ +|..+++++.++.++|.++||.++|++.+..||++.|.+.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 5788999999999999999999999999999875 5999999999999999999999999999999999999544
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..++++++.+...+. ++...+. + .... ... ...+.
T Consensus 181 ~~~~~~~~~~~~~~~~~----~~~~~~~----------------~-~~~~---~~~-------------------~~~~~ 217 (1140)
T PRK06814 181 MGIAVLGWLASLFIPKT----GNAAPDL----------------K-IDRN---IIR-------------------STITL 217 (1140)
T ss_pred HHHHHHHHHHHhhCCCC----CCCCCCC----------------e-eccc---hHH-------------------HHHHH
Confidence 44444444333222211 1110000 0 0000 000 00000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~gf~ip~~~~~ 273 (506)
.+. +-..|.++ .+.+...+++.++....+.+.... +..+.+- .-.+++.
T Consensus 218 ~~~----------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~-----~~~g~~~ 267 (1140)
T PRK06814 218 LKY----------------------AKADKRIW---LAILGISWFWLVGAVVLSQLPLLAKETLGGDE-----NVATLFL 267 (1140)
T ss_pred HHH----------------------HhcCchHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHcCCch-----HHHHHHH
Confidence 000 00001122 122222333333333223222221 1111110 1124566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC------
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKA------ 347 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~------ 347 (506)
+...+..++...+..++ .+|. ...+.+..|.++.+++.+.+.+.. .+........
T Consensus 268 ~~~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~ 328 (1140)
T PRK06814 268 AVFSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFAS--------SSVPAEPAQLKSILVF 328 (1140)
T ss_pred HHHHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhcc--------cccccccccccchhhh
Confidence 77777777777776663 3322 122335556655555544333310 0000000000
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 348 IIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 348 ~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
....+.|++++.+++.+++..+..+...+++.+.+|++++|.++|++.+...++..+++.+...+.
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 329 LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 001345677788899999999999999999999999999999999999999999999988877765
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-09 Score=110.35 Aligned_cols=276 Identities=10% Similarity=0.111 Sum_probs=165.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.+..-|...+.+.|.++++ +|.++++++..+.++|..++|.+++++.+++||++.+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 5777888899999999988888888888888754 6999999999999999999999999999989999877654
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
.+..++. +.+.++. |+.++ +++ +.+.
T Consensus 185 ~~~~~~~---~~~~~~~-----~~~~~-------------~~~-~~~~-------------------------------- 210 (392)
T PRK12382 185 MVLPLLA---WAFNGTV-----RKVPA-------------HAG-ERPS-------------------------------- 210 (392)
T ss_pred HHHHHHH---HHHHHhc-----cCCCC-------------Ccc-cCch--------------------------------
Confidence 4432222 2222211 11000 000 0000
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRM-LPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~-l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~~~ 273 (506)
.+ +..|.+.+. +.+.+....+.. ..+.....-. +... . +.....
T Consensus 211 ----------------~~--------~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~--~~~~----~-~~~~~~ 255 (392)
T PRK12382 211 ----------------LW--------SVVGLIWKPGLGLALQGVGFAV----IGTFVSLYFA--SKGW----A-MAGFTL 255 (392)
T ss_pred ----------------HH--------HHHHHHHHhHHHHHHHHHHHhH----HHHHHHHHHH--hcCC----c-hhHHHH
Confidence 00 000111110 001111111111 1111111101 1111 1 112223
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
....+..++..++..+ +.+|.+ +.+.+..+.++.+++++..... -+.
T Consensus 256 ~~~~~~~~~~~~~~g~----l~~r~g-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 302 (392)
T PRK12382 256 TAFGGAFVLMRVLFGW----MPDRFG-------GVKVAIVSLLVETVGLLLLWLA----------------------PTA 302 (392)
T ss_pred HHHHHHHHHHHHHHHH----HHHhcC-------CCeehHHHHHHHHHHHHHHHHc----------------------ccH
Confidence 3344444555555555 344432 2334667777777776654431 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccch
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRL 433 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~ 433 (506)
++.++..++.++++....|.....+.+..|++.||..+|++.....+|+.+++.+...+.+.. .+
T Consensus 303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~---------------g~ 367 (392)
T PRK12382 303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF---------------GY 367 (392)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------Cc
Confidence 455667788999999888888888889999999999999999999999999998887765321 13
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 010589 434 EHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 434 ~~~~~~la~l~~l~~~i~~~ 453 (506)
...|.+.+++.+++.++.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 368 PSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 55677677766666655543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-10 Score=118.45 Aligned_cols=311 Identities=12% Similarity=0.091 Sum_probs=169.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...|...+++.|.++++ +|.+++++++.+.++|..++|.+++++.+++||++.|++.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 5677888999999999999999999999999754 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHH--------HHHHHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQ--------VIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~--------vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
++..++..+...+..++.++ ...++...... .+.....+.. .. . +.................
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~-~~-~-----~~~~~~~~~~~~~~~~~~- 232 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGP-ER-G-----WFDSNEILILSITGLVAI- 232 (485)
T ss_pred hHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCC-CC-C-----CCCchHHHHHHHHHHHHH-
Confidence 77666555544333322111 11111111000 0001111100 00 0 000000000000000000
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHhccCCCCcc
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQA-RTMNTHLTHSF 265 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~-~~~~~~~~~gf 265 (506)
..+..+. ... .....++++++. |.+.. ..+...+....+..........- +..+.+ .
T Consensus 233 --~~~~~~~--~~~-----~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s---~- 290 (485)
T TIGR00711 233 --IAFVVWE--LTD-----DNPLVDLRLFKY------RNFTI---GCVYMSLLGLGLYGSFYLLPLYLQQVLGYT---A- 290 (485)
T ss_pred --HHHHHHH--HcC-----CCCccCHHHHcC------CChHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---H-
Confidence 0000000 000 000001111111 11111 11112222222222222222111 111111 0
Q ss_pred eeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010589 266 KIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP 345 (506)
Q Consensus 266 ~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 345 (506)
...+.+.....+..++..|+..++ .+|.+ +.+.+.+|+++.++++++....- .
T Consensus 291 -~~~g~~~~~~~~~~~~~~~~~g~l----~~r~~-------~~~~~~~g~~~~~~~~~~~~~~~--------~------- 343 (485)
T TIGR00711 291 -LQAGLHILPVGLAPMLSSPIAGRM----GDKID-------PRKLVTIGLILYAVGFYWRAFTF--------T------- 343 (485)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH----HhhcC-------cHHHHHHHHHHHHHHHHHHhccC--------C-------
Confidence 012344555666667777776653 34432 22345667777777766554210 0
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 346 KAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 346 ~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
...+.++++...++.++|..+..+.....+.+..|++.+|.++|++.....+|..+|..+.+.+.
T Consensus 344 ---~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 344 ---PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 02345566666889999999888877888888899999999999999999999999887766553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-09 Score=113.25 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc-ccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD-NVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~-~~g~~~~F~i 113 (506)
+.+.+++...+.+++.+...+...++..|.++++ +|.++.++.-++.++|.++++.+.+++.+ ..||+..|++
T Consensus 106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i 179 (491)
T PRK11010 106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL 179 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 5677777788889999999999999999998854 59999999999999999999999999988 4799999999
Q ss_pred hHHHHHHHHHHHH
Q 010589 114 PAIGMVMSVLAFV 126 (506)
Q Consensus 114 ~ai~~~~~li~f~ 126 (506)
.++.+++..+..+
T Consensus 180 ~a~l~ll~~l~~~ 192 (491)
T PRK11010 180 MAALLIPCIIATL 192 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-09 Score=114.43 Aligned_cols=310 Identities=14% Similarity=0.136 Sum_probs=164.9
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc-------cccccc
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ-------DNVGWG 108 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~-------~~~g~~ 108 (506)
...+++...+..++.+++.+...++..+..++.+ +|++..++-..+.++|.+++..+.+.+. +..||+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 3444455566677778888888888888765432 6889999988999999888766654443 346899
Q ss_pred hhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccc
Q 010589 109 LGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQ 188 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~ 188 (506)
+.|.+.++..++..++.....|+. ++..+. +++ .+.
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~----~~~~~~------------~~~----~~~------------------------ 209 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKER----YSEIPK------------NIE----KKL------------------------ 209 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEec----CCCCCc------------ccc----cCC------------------------
Confidence 988887776666554433332221 110000 000 000
Q ss_pred hhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeC
Q 010589 189 FKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIP 268 (506)
Q Consensus 189 ~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip 268 (506)
+..+..+ ..-..|.++. +.+...+.+..+....+...+.. ....+ . ..-
T Consensus 210 -~~~~~~~----------------------~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~~ 258 (437)
T TIGR00792 210 -SLKQIFK----------------------ALFKNDQLLI---LCLAYLFYNLAFNIKNGVQVYYF---TYVLG-D-PEL 258 (437)
T ss_pred -CHHHHHH----------------------HHhCCHHHHH---HHHHHHHHHHHHHHHcchhheeE---eeecC-C-hHH
Confidence 0000000 0000122222 22222233332222111111111 10111 0 001
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
.+++..+..+..++..|+..+ +.+|.+ ..+.+.+|.++.+++++...+..
T Consensus 259 ~~~~~~~~~i~~ii~~~~~~~----l~~r~g-------~~~~~~~~~~~~~~~~~~~~~~~------------------- 308 (437)
T TIGR00792 259 FSYMGSIAIVAGLIGVLLFPR----LVKKFG-------RKILFAGGILLMVLGYLIFFFAG------------------- 308 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHcc-------------------
Confidence 123444555666666666555 455543 22346677777777766554421
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-------ESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNN 421 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-------~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~ 421 (506)
.+.++.+...++.+++.....+...++..+.+| ++.+|.++|++.+...+|..+++.+...+.+.. +
T Consensus 309 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~----G 382 (437)
T TIGR00792 309 --SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII----G 382 (437)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C
Confidence 133445566788899999889998899888765 667899999999999999999888877665432 1
Q ss_pred cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhh-ccccc
Q 010589 422 WLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAW-FYTYK 461 (506)
Q Consensus 422 w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~-~y~~~ 461 (506)
|..+..-.+.....+.+.+..+.++..++-+++.. +|+-.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~~~~y~l~ 423 (437)
T TIGR00792 383 YVANAAQSPITLNGIKILMFAVPALFLLLAAIIIGRFYKLT 423 (437)
T ss_pred CCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeCc
Confidence 21110001112234444455555555544444443 55443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-09 Score=111.23 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...|...+++.|.++++ +|+.++++++.+.|+|..++|.+++++.+.+||++.|.+.
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 5788899999999999999999999999998754 6999999999999999999999999999999999999987
Q ss_pred HHHHHHHH
Q 010589 115 AIGMVMSV 122 (506)
Q Consensus 115 ai~~~~~l 122 (506)
++..++.+
T Consensus 181 ~~l~~~~~ 188 (394)
T PRK10213 181 AVMGVLCI 188 (394)
T ss_pred HHHHHHHH
Confidence 76555444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-09 Score=108.65 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.++|.+...+...+++.|.++++ +|++.+++++.+.++|..+++.+++++.++.+|++.|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4677888888999999999999999999998754 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
++..++..+...+.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 166 SLAGILLSALIFFI 179 (385)
T ss_pred HHHHHHHHHHHHHh
Confidence 87766665554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-09 Score=111.25 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|..-+...+.+.+.++++ +|+.++++++.+.++|..+++.+++++.+++||++.|.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4666777777788888888898999999998754 6999999999999999999999999999999999999987
Q ss_pred HHHHHHH
Q 010589 115 AIGMVMS 121 (506)
Q Consensus 115 ai~~~~~ 121 (506)
++..++.
T Consensus 184 ~i~~~~~ 190 (434)
T PRK11663 184 GIIAIVV 190 (434)
T ss_pred HHHHHHH
Confidence 7655543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-10 Score=114.99 Aligned_cols=267 Identities=18% Similarity=0.196 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
.+.++++..+.++|.+...+...+++.|.++++ +|+++++++..+.++|..+++.+++++.+++||++.|.+.+
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~ 158 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA 158 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence 557889999999999999999999999999975 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhhh
Q 010589 116 IGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKA 195 (506)
Q Consensus 116 i~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a 195 (506)
+..+++.++..+..+. .+++.. +..+.+++.. .+.. +.+
T Consensus 159 ~~~~~~~il~~~~~~~---~~~~~~---------------~~~~~~~~~~--~~~~-------------------~~~-- 197 (352)
T PF07690_consen 159 ILSLIAAILFILFLPE---PPPPRE---------------RESPKESESK--KPKP-------------------LKP-- 197 (352)
T ss_dssp HHHHHHHHHHHCCC------STTTT-----------------SSTTTT----HHHC-------------------CCH--
T ss_pred chhhhhhhhHhhhhhh---cccccc---------------cccccccccc--cccc-------------------ccc--
Confidence 9888887654333321 111110 0000000000 0000 000
Q ss_pred hccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCccccch
Q 010589 196 ATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASLSI 274 (506)
Q Consensus 196 ~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~~~ 274 (506)
.+ +...+.+.++ .++.....+...+....+..... .+..+.+ + . ...+.+..
T Consensus 198 ---------------~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~--~~~~~~~~ 250 (352)
T PF07690_consen 198 ---------------GF-----KSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS-G-P--SQAGLLFS 250 (352)
T ss_dssp ----------------C-----THHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-T-H--HHHHHHHH
T ss_pred ---------------cc-----ccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhccCCC-H-H--HHHHHHHH
Confidence 00 0111112121 12222222222222222222211 1111111 0 0 11133345
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
+..+..++..++..+ +.+|.+ +.++..+......++.+...+... ..+.+
T Consensus 251 ~~~~~~~~~~~~~~~----l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 300 (352)
T PF07690_consen 251 IFGIVGIIGSLLAGR----LSDRFG-------RRRRLLIAILLLILGALGLLLLPF-------------------SSSPV 300 (352)
T ss_dssp HHHHHHHHHHHHHHH----HHHHTT-------CHHHHHHHHHHHHHHHHHHCCSHH-------------------HCHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHcC-------cHHHHHHHHHHHHHHHHHHHHHHH-------------------hhhHH
Confidence 555555555566555 344432 223344444444444433332110 12456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHH
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGT 406 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~ 406 (506)
|.+...++.+++..+..+...+++.+.+|++.+|.++|++.....+|..+|+
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7777889999999999999999999999999999999999999999998874
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-09 Score=107.95 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.+...+...+++.|.++++ +|.+++++++...++|..++|.+.+++.+..||++.|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 3566777788889999988888889999988754 6999999999999999999999999988889999999988
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..++..+..
T Consensus 164 ~~~~~i~~~~~ 174 (392)
T PRK10473 164 AAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHH
Confidence 87666655543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-09 Score=108.25 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...+...+++.|.++++ +|+++++++..+.++|..+++.+.+++.++.||+..|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 4667788889999999999999999999998754 6999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
++..++..++
T Consensus 178 ~~~~~~~~~~ 187 (398)
T TIGR00895 178 GIAPLLLLLL 187 (398)
T ss_pred hhHHHHHHHH
Confidence 6555544443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-09 Score=109.10 Aligned_cols=262 Identities=16% Similarity=0.079 Sum_probs=150.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc--------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-------- 106 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-------- 106 (506)
+.+.++....+.+++.+...+...+++.|.++++ +|+.+.++...+.++|.++++.+++++..+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 4555555555667888888899999999999654 69999999999999999999999999988888
Q ss_pred cchhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 107 WGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 107 ~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
|+..|.+.++..+++.+..++..|+-.+.++.++ +. ++. .
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~---~~---------~~~----------~------------------ 195 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPK---PL---------TQA----------V------------------ 195 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCcccccch---hH---------HHH----------H------------------
Confidence 9999999988777766554433322000000000 00 000 0
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcce
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFK 266 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ 266 (506)
.+..+ +.-..|...+.+.+.+...++...+.+..+....+..+. .
T Consensus 196 -----~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g------ 240 (356)
T TIGR00901 196 -----LKPIR----------------------EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM--G------ 240 (356)
T ss_pred -----HHHHH----------------------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C------
Confidence 00000 000001111122233333344444444444333222221 1
Q ss_pred eCcccc---chhhH-HHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010589 267 IPPASL---SIFGI-LTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLL 342 (506)
Q Consensus 267 ip~~~~---~~~n~-l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~ 342 (506)
.+++.+ ..... +..++..++..+ +.+|.+ +.+.+.+++++.+++......... ..+.
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~g~~~~g~----l~~r~g-------~~~~l~~~~~~~~~~~~~~~~~~~------~~~~-- 301 (356)
T TIGR00901 241 FSKEEIALVAKINGLLGAILGGLIGGI----IMQPLN-------ILYALLLFGIVQALTNAGFVWLAS------NGHH-- 301 (356)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHH----HHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHh------cCcc--
Confidence 122232 22222 233334333333 344432 334466777777776654443210 0000
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHH
Q 010589 343 DDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAIS 399 (506)
Q Consensus 343 ~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~a 399 (506)
+ +....+.++++...++.++++.+..+...++..+.+|+++||..+|++.....
T Consensus 302 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 302 D---GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred c---ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 0 00012445677778899999999999999999999999999999999877543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-09 Score=112.24 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVG 106 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g 106 (506)
....++++.++.++|.|+.-|...++++|.++++ +|+.+++++..+..+|.++++.+++.+. +++|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 4566788999999999999999999999999865 5999999999999999999987765442 4579
Q ss_pred cchhhhhhHHHHHHHHHHHHh
Q 010589 107 WGLGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 107 ~~~~F~i~ai~~~~~li~f~~ 127 (506)
|++.|.+.++..++.++..++
T Consensus 193 Wr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHc
Confidence 999999887777666554433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-09 Score=114.04 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.+++.|...+...+++.|.++++ +|..++++++.+.++|..+++.+.+++.+++||++.|.+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 5677888899999999999999999999999764 5899999999999999999999999999999999999875
Q ss_pred HHHHH
Q 010589 115 AIGMV 119 (506)
Q Consensus 115 ai~~~ 119 (506)
++..+
T Consensus 181 ~~~~~ 185 (496)
T PRK03893 181 ILPII 185 (496)
T ss_pred HHHHH
Confidence 54433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-09 Score=113.40 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...+...+++.|.++++ +|+++.+++..+.++|.++++.+.+++.+.+||++.|+++
T Consensus 105 ~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 105 GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 5778888999999999999999999999998765 5899999999999999999999999999999999999876
Q ss_pred HHHH
Q 010589 115 AIGM 118 (506)
Q Consensus 115 ai~~ 118 (506)
++..
T Consensus 179 ~~~~ 182 (426)
T PRK12307 179 LLPV 182 (426)
T ss_pred HHHH
Confidence 5433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.4e-09 Score=107.95 Aligned_cols=85 Identities=9% Similarity=0.081 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|..-+...+.+.|.++++ ++.+.++++..+.++|..+||.+++++.++.||++.|.+.
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~ 176 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAII 176 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5677888899999998876666667788888764 5888899999999999999999999999889999999988
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..+++.+..
T Consensus 177 ~~~~~i~~~~~ 187 (413)
T PRK15403 177 AVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHH
Confidence 87766665543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-08 Score=105.10 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+...+...+++.|.++++ +|.+++++++.+.++|..+++.+++++.+..||++.|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 4566778888889999999999999999988754 5999999999999999999999999999989999999988
Q ss_pred HHHHHHHHHHHHh
Q 010589 115 AIGMVMSVLAFVF 127 (506)
Q Consensus 115 ai~~~~~li~f~~ 127 (506)
++..++..+...+
T Consensus 152 ~~~~~~~~~~~~~ 164 (377)
T PRK11102 152 ALAAILAAALVFF 164 (377)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666554433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.7e-09 Score=106.13 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHH--HHHHHHHHHHHHHHHHhhHhhhhccccccchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWN--FFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~--~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~ 112 (506)
+.+.+++...+.+.+.+..-|...++..+..+++ +|.. .+++.+.+.++|..+++.+++++.+++||++.|.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~ 159 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRT------GREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFL 159 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc------chhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHH
Confidence 3555665556666666666677777766665432 2332 3678888899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh
Q 010589 113 IPAIGMVMSVLAFVF 127 (506)
Q Consensus 113 i~ai~~~~~li~f~~ 127 (506)
+.++..++..+..++
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 160 TAALAFVLCGVLVWL 174 (375)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988876666555433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=106.52 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc-ccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV-GWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i 113 (506)
+++.++++..+.++|.|..-+...+.+.+.++ + +|..+++++..+.++|..+++.+++++.++. +|+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46678889999999999999999998888875 3 5889999999999999999999999998875 89988765
Q ss_pred hHHHHHHHH
Q 010589 114 PAIGMVMSV 122 (506)
Q Consensus 114 ~ai~~~~~l 122 (506)
.++..++.+
T Consensus 169 ~~~~~~~~~ 177 (393)
T PRK09705 169 WALPAVVAL 177 (393)
T ss_pred HHHHHHHHH
Confidence 554444433
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=119.48 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=79.8
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchhhh
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLGFG 112 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~F~ 112 (506)
.+.|.+.+...+.++|.+.+.|..+++++|.|+++ +|+++|.||||++++|+.+|.+++.++.+.-+ ||++|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 36888999999999999999999999999999876 69999999999999999999999999998766 999999
Q ss_pred hhHHHHHHHHHH-HHhcC
Q 010589 113 IPAIGMVMSVLA-FVFGS 129 (506)
Q Consensus 113 i~ai~~~~~li~-f~~~~ 129 (506)
..++.+++..++ +++.+
T Consensus 193 ~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred eehHHHHHHHHHHHhhcc
Confidence 999988876655 44443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-08 Score=107.34 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHH-HHHhhHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIAT-LTALTVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i 113 (506)
+.+.+++...+.+++.|...|.......+.++++ +|..++++++.+.++|. ++++++...+....||++.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 4566777778889999998888888888888654 59999999999999986 5566654334344599999998
Q ss_pred hHHHHHHHHHH
Q 010589 114 PAIGMVMSVLA 124 (506)
Q Consensus 114 ~ai~~~~~li~ 124 (506)
.++..++..++
T Consensus 193 ~~~~~~~~~~l 203 (452)
T PRK11273 193 PAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHH
Confidence 87766664433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-08 Score=105.19 Aligned_cols=83 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...+...++..|.++++ ++..+++++..+..+|..++|.+++++.++.||++.|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 4667788888889988887777777888877643 5888899999999999999999999999989999999987
Q ss_pred HHHHHHHHH
Q 010589 115 AIGMVMSVL 123 (506)
Q Consensus 115 ai~~~~~li 123 (506)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (394)
T PRK11652 169 LLLGAGVTF 177 (394)
T ss_pred HHHHHHHHH
Confidence 765554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-09 Score=108.07 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...+.......+.+++ +|+.+.+++..+.++|.++++.+.+.+.+..||++.|.+.
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 567788888888999887777777777666642 5889999999999999988766666666778999999988
Q ss_pred HHHHHHHHHHH
Q 010589 115 AIGMVMSVLAF 125 (506)
Q Consensus 115 ai~~~~~li~f 125 (506)
++..++..+..
T Consensus 163 ~~~~~~~~~~~ 173 (377)
T TIGR00890 163 GIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHHH
Confidence 87766655543
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-08 Score=106.88 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.++|.|+..+...+++.|.++++ +|..+.+++..+..+|.++++.++..+.+ |++.|.+.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 5777888999999999999999999999999865 58888999999999999999988777654 99999988
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
++..++..+..++.
T Consensus 250 ~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 250 SLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHHHHHHHHHhc
Confidence 87776665554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-08 Score=104.46 Aligned_cols=73 Identities=10% Similarity=0.124 Sum_probs=51.7
Q ss_pred CCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHh
Q 010589 51 GGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 51 G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~ 127 (506)
+...|...++..|..++++ ++...+.++...+.++|..+||.+++++.+++||+..|.+.++..++..+..+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 120 STANPQMFALAREHADKTG----REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HhhHHHHHHHHHHHhhhcc----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666554321 112334478889999999999999999999999999999888766655544333
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-09 Score=106.56 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHh-hHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTAL-TVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~-~~~~~l~~~~g~~~~F~i 113 (506)
+.+.++++..+.+++.|...|...+++.|.++++ +|+++++++..+.++|..+++ ++.+.+.+..+|++.|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 5677888899999999999999999999999865 589999999999999999999 677778788999999998
Q ss_pred hHHHHHHHHHHHH
Q 010589 114 PAIGMVMSVLAFV 126 (506)
Q Consensus 114 ~ai~~~~~li~f~ 126 (506)
.++..++..++.+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 8776665444433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-08 Score=102.12 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F 111 (506)
+.+.++++..+.++|.|...|...+.+.+..+++ +|++++++++.+.++|..+|+.+.+++.+...++..+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 5778888899999999998888877777777643 6899999999999999999999999997764444433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-08 Score=104.24 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.+...+...+++.|.++++ ++.+.++......++|..++|.+++++.+++||++.|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4667777888888888887788888889988754 5778888888999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHh
Q 010589 115 AIGMVMSVLAFVF 127 (506)
Q Consensus 115 ai~~~~~li~f~~ 127 (506)
++..++..+..+.
T Consensus 167 ~~~~~~~~~~~~~ 179 (401)
T PRK11043 167 FAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHH
Confidence 7776665554433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-08 Score=104.00 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.|...+...+++.|.++++ +|.++++++..+.++|..+++.+++++.+..||++.|.+.
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 5788888999999999988887777777776543 5888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
++..++..+.
T Consensus 164 ~~~~~~~~~~ 173 (382)
T PRK10091 164 AVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHH
Confidence 8766655543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-08 Score=116.99 Aligned_cols=270 Identities=11% Similarity=0.016 Sum_probs=153.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc--------c-
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN--------V- 105 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~--------~- 105 (506)
+.+.+++..++.+++.|++.|...+++.|.++++ +|+.+++++..+.++|.++|+.+++++.+. .
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 3677888888999999999999999999999865 599999999999999999999999998765 2
Q ss_pred ccchhhhhhHHHHH-HHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccc
Q 010589 106 GWGLGFGIPAIGMV-MSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLV 184 (506)
Q Consensus 106 g~~~~F~i~ai~~~-~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~ 184 (506)
+|.+.+.+.++..+ +++++.+.. +.. |..++. +. ...... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~-------------~~-~~~~~~-----~~------------- 218 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRL-PKV----PAAAPE-------------VF-DKKKYL-----FP------------- 218 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcC-cCC----CCCCcc-------------cc-cccccc-----cH-------------
Confidence 23333333333222 222222222 211 111000 00 000000 00
Q ss_pred cccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCC
Q 010589 185 HTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTH 263 (506)
Q Consensus 185 ~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~ 263 (506)
.......+. .-..+.+. .+.+...+++.......+.+... ......+.
T Consensus 219 ----~~~~~~~~~----------------------l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-- 267 (1146)
T PRK08633 219 ----KLLWRNLKL----------------------LRSDRVLW---LAIIGLSYFWFISQLAQANFPAYAKEVLGLDN-- 267 (1146)
T ss_pred ----HHHHHHHHH----------------------HhcCcHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCc--
Confidence 000000000 00001111 11222233333222222222211 11111110
Q ss_pred cceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010589 264 SFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLD 343 (506)
Q Consensus 264 gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~ 343 (506)
....+++.....+..++..++..+ +.+|. ...+.+.+|.++++++++.....
T Consensus 268 --~~~~g~~~~~~~ig~~~g~~~~g~----l~~r~-------~~~~~~~~~~~~~~~~~~~~~~~--------------- 319 (1146)
T PRK08633 268 --TFQVQYLLAASAIGIGIGSLLAGR----LSGRH-------IELGLVPLGALGLALSLFLLPTA--------------- 319 (1146)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH----HhCCc-------eEccchhHHHHHHHHHHHHHHHh---------------
Confidence 001234445555555555555554 34442 23334566777777666555442
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 344 DPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 344 ~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++..+..+...+++.+.+|++.||.++|+..+...+|..++..++.++.
T Consensus 320 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 320 -------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred -------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667777899999999999999999999999999999999999998888877766665553
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-08 Score=105.15 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccccch
Q 010589 38 VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVGWGL 109 (506)
Q Consensus 38 ~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g~~~ 109 (506)
.+.+...+.++|.|+.-|...++++|.++++ +|+.+.++...+.++|..+|+.+...+. .++|||+
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 4778889999999999999999999999865 5888888888888888888876554432 2689999
Q ss_pred hhhhhHHHHH
Q 010589 110 GFGIPAIGMV 119 (506)
Q Consensus 110 ~F~i~ai~~~ 119 (506)
.|++.++..+
T Consensus 194 ~f~i~~~~~l 203 (490)
T PRK10642 194 PFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHH
Confidence 9998665433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-08 Score=100.04 Aligned_cols=261 Identities=15% Similarity=0.147 Sum_probs=148.3
Q ss_pred HHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHH
Q 010589 40 YISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMV 119 (506)
Q Consensus 40 ~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~ 119 (506)
++...+.++|.|++.|...+++.|.++++ +|.++++++....++|..+||.++|++.+. .|+..|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 45567889999999999999999999865 699999999999999999999999999874 47777776665555
Q ss_pred HHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhhhhccc
Q 010589 120 MSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVT 199 (506)
Q Consensus 120 ~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~ 199 (506)
++.+.....++. |..++ ++ +.+.....+ .+.+..+.
T Consensus 165 ~~~~~~~~l~~~-----~~~~~-------------~~----~~~~~~~~~--------------------~~~~~~~~-- 200 (393)
T PRK11195 165 LAALFNLFIPRL-----GARRP-------------GQ----SWNPIALLR--------------------DFFHACRV-- 200 (393)
T ss_pred HHHHHHhcCCCC-----ccccc-------------cc----CCCHHHHHH--------------------HHHHHHHH--
Confidence 444333222211 10000 00 000000000 00000000
Q ss_pred cCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHhccCCCCcceeCccccchhhHH
Q 010589 200 EGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQ-ARTMNTHLTHSFKIPPASLSIFGIL 278 (506)
Q Consensus 200 ~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~-~~~~~~~~~~gf~ip~~~~~~~n~l 278 (506)
.| ++ |.+.. ......++|.+........... .+.. +.. . ...+.+.....+
T Consensus 201 -----------l~--------~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l--g~s-~--~~~G~~~~~~~~ 252 (393)
T PRK11195 201 -----------LW--------RD-KLGRF---SLAGTTLFWGAGATLRFLVLAWAPVAL--GIT-L--NQPAYLQAVVAI 252 (393)
T ss_pred -----------HH--------hC-chhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC-h--hHHHHHHHHHHH
Confidence 00 00 11111 1111223344333322221111 1111 111 0 112445566667
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHH
Q 010589 279 TMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVP 358 (506)
Q Consensus 279 ~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~ 358 (506)
..++..++.+++ .+|. ...+.+..|+. .++.++..+. ..+.|+.+.
T Consensus 253 g~i~g~~~~~~l----~~~~-------~~~~~~~~g~~-~~~~~~~~~~----------------------~~~~~~~~~ 298 (393)
T PRK11195 253 GIAVGAGAAARL----VTLE-------TVLRVLPAGIL-MGLVVLLMAL----------------------QHSLLPAYP 298 (393)
T ss_pred HHHHHHHHHHHH----hcCC-------cccchHHHHHH-HHHHHHHHHH----------------------HhHHHHHHH
Confidence 777776766552 2221 22334555543 3333222221 124556667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcccChhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 359 QYCLHGVAEVFMSVGHLEFLYDQSPESM-RSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 359 ~~~l~~igEl~~sp~gl~~~~~~aP~~~-~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..++.+++..+..+...+.+.+.+|++. +|..+++..+...++..++..+.....
T Consensus 299 ~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 299 LLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7788999988888888888888777766 799999999999999999888877664
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.5e-08 Score=107.06 Aligned_cols=88 Identities=22% Similarity=0.344 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc----------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN---------- 104 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~---------- 104 (506)
+.+.++++.++.++|.|+..|...+++.+.++++ +|+..++++.++..+|.++++.++..+..+
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 4677888999999999999999999999999865 689999999999999999998776554432
Q ss_pred ---cccchhhhhhHHHHHHHHHHHHhc
Q 010589 105 ---VGWGLGFGIPAIGMVMSVLAFVFG 128 (506)
Q Consensus 105 ---~g~~~~F~i~ai~~~~~li~f~~~ 128 (506)
.+|++.|+++++..++.++.+++.
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~~~l 354 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGALTFM 354 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 368888888877766665554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-08 Score=102.57 Aligned_cols=335 Identities=16% Similarity=0.133 Sum_probs=194.2
Q ss_pred CchhhHHHHHHhhCCCCC-CCCCCCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHH
Q 010589 1 MSQGLVAITLSAVLPGLR-PPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNF 79 (506)
Q Consensus 1 ~~~g~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~ 79 (506)
|.+|.+++.++..+.-.. |.. .+.......+++...+..++...+..+..+++.|..++.+ +|.+.
T Consensus 75 ~l~g~i~~~~~~~llf~~~p~~--------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l 141 (428)
T PF13347_consen 75 ILIGAILLALSFFLLFSPPPAG--------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRL 141 (428)
T ss_pred eehhhHHHHHHHHHhhccccch--------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhH
Confidence 356777777776443321 100 0112233445667777799999999999999999987654 68888
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhcccc-------ccchhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHH
Q 010589 80 FNWYYFCMGIATLTALTVVVYIQDNV-------GWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAA 152 (506)
Q Consensus 80 f~~fy~~iNiG~~i~~~~~~~l~~~~-------g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a 152 (506)
.++-.++.++|.++...+.+.+.+.. +|++.+.+.++..++..++..+..|+ ++.+++.+
T Consensus 142 ~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~------------ 208 (428)
T PF13347_consen 142 SSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ------------ 208 (428)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee-cccccccc------------
Confidence 88888888888876655555443221 68887777777666666655554443 00000000
Q ss_pred HHhccccCCCCcccccccCCcccccccccccccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHH
Q 010589 153 FKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPV 232 (506)
Q Consensus 153 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l 232 (506)
+++.+ +.+..+. ++ ++ |.+. .+
T Consensus 209 --~~~~~-------------------------------~~~~~~~----------------~~-----~n-r~~~---~l 230 (428)
T PF13347_consen 209 --EKKIS-------------------------------LRDSLRS----------------LF-----RN-RPFR---IL 230 (428)
T ss_pred --ccccc-------------------------------cccchhh----------------hc-----cc-chHH---HH
Confidence 00000 0000000 00 00 1222 22
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHH-hccCCCCcceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchh
Q 010589 233 WAAGILLVTASSHQHSFTIQQART-MNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRM 311 (506)
Q Consensus 233 ~~~~iif~~~~~q~~s~~~~~~~~-~~~~~~~gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki 311 (506)
++...+.+....-..+...+..+. +..+ . -.+.+.....+..++..|+..+ +.+|.++ .+-+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~-----~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk-------~~~~ 293 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYVLGNE-G-----LISIFMLIFFVASIVGSPLWGR----LSKRFGK-------KKVY 293 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h-----hhHHHHHHHHHHHHHHHHHHHH----HHHHccc-------eeeh
Confidence 333344444444333333333222 2211 0 1133444455555666666544 5666543 2347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-------h
Q 010589 312 GVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-------E 384 (506)
Q Consensus 312 ~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-------~ 384 (506)
..|.++.++++++..+.. .-+.++.++..++.+++-....+...++..+..+ +
T Consensus 294 ~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~ 353 (428)
T PF13347_consen 294 IIGLLLAALGFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGR 353 (428)
T ss_pred hhhHHHHHHHHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCC
Confidence 788888888888776642 1367888889999999999999999999988877 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC-CCcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 385 SMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR-NLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 385 ~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~-~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
+..|+++|++.+..-++..+++.+...+-...+ +-++. .-++.....+-.+++.+.++..++-.++.++|+-
T Consensus 354 r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G----y~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l 426 (428)
T PF13347_consen 354 RREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG----YDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPL 426 (428)
T ss_pred CchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC----cCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 567999999999999999998887776654331 11110 1222234555566666666666666666776653
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-08 Score=107.35 Aligned_cols=84 Identities=4% Similarity=-0.034 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc---------cc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD---------NV 105 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~---------~~ 105 (506)
+.+.+++...+.++|.+..-+ ....+++.++++ +|+.++++++...|+|..+++.+.+.+.. ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 455667777788888776543 445677888654 58999999988888998888776665432 25
Q ss_pred ccchhhhhhHHHHHHHHHHH
Q 010589 106 GWGLGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 106 g~~~~F~i~ai~~~~~li~f 125 (506)
||++.|.+.++..++..+..
T Consensus 196 gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 89999998887666554443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-07 Score=97.25 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-cccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-VGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 113 (506)
+.+.+++...+.++..+...|...++..|.++++ +|.++.++..++.++|.++++.+.+++.+. .||+..|++
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 4565665556667888889999999999998654 599999999999999999999998888875 599999999
Q ss_pred hHHHHHHHHHHH
Q 010589 114 PAIGMVMSVLAF 125 (506)
Q Consensus 114 ~ai~~~~~li~f 125 (506)
.++..++..+..
T Consensus 167 ~a~~~l~~~l~~ 178 (402)
T PRK11902 167 MAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHH
Confidence 888776655543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-08 Score=103.98 Aligned_cols=130 Identities=8% Similarity=0.108 Sum_probs=83.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh-
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES- 385 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~- 385 (506)
..+.+.+|+++.+++++...... ..+.|+++...++.++|+.+..+...+...+.+|++
T Consensus 293 ~~~~~~~g~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~ 352 (448)
T PRK09848 293 KKNTFLIGALLGTCGYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGE 352 (448)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 34457778888887776554311 134556667778999999999999999999888754
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 386 ------MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYT 459 (506)
Q Consensus 386 ------~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~ 459 (506)
.+|.++|++.+..-+|..+|..+...+-... ++-++.+-.++-...+.+.+..+.++..++..++.++|+
T Consensus 353 ~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~----G~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~ 428 (448)
T PRK09848 353 YLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS----GYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYP 428 (448)
T ss_pred HhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 5699999999999999999887776554332 111110101112344555555555555555555555554
Q ss_pred c
Q 010589 460 Y 460 (506)
Q Consensus 460 ~ 460 (506)
-
T Consensus 429 l 429 (448)
T PRK09848 429 L 429 (448)
T ss_pred C
Confidence 4
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=8e-08 Score=99.43 Aligned_cols=83 Identities=23% Similarity=0.125 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+...++++..+.++|.|.. ++..+..++.++++ +|.++.+++..+.++|..+++.+++++.+++|||+.|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5777889999999999864 45555567777653 6999999999999999999999999999999999999885
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
++..++..++
T Consensus 151 ~~l~~~~~~~ 160 (368)
T TIGR00903 151 AAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHHH
Confidence 5554444333
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-08 Score=101.88 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc--cchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG--WGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g--~~~~F~ 112 (506)
+.+.++++..+.++|.|...+...+++.|.++++ +|..+++++..+.++|..+++.+.+.+.+..+ |++.|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 4777888899999999999999999999999765 59999999999999999999999999887766 999998
Q ss_pred hhHHHHHHHHH
Q 010589 113 IPAIGMVMSVL 123 (506)
Q Consensus 113 i~ai~~~~~li 123 (506)
+.++..++.++
T Consensus 173 ~~~~~~~~~~~ 183 (405)
T TIGR00891 173 ISILPIIFALW 183 (405)
T ss_pred HHHHHHHHHHH
Confidence 76665554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-07 Score=96.87 Aligned_cols=84 Identities=10% Similarity=0.135 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc-cccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ-DNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~-~~~g~~~~F~i 113 (506)
+.+.+++...+.+++.|...+...+.+.+.++++ +|..+++..+.+.++|..++|.+.+++. +..||++.|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4677888888999999999999999999998653 5888888888899999999998888764 46799999998
Q ss_pred hHHHHHHHHHH
Q 010589 114 PAIGMVMSVLA 124 (506)
Q Consensus 114 ~ai~~~~~li~ 124 (506)
.++..++..+.
T Consensus 168 ~~~~~~~~~~~ 178 (394)
T PRK03699 168 IGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHH
Confidence 77766555443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-08 Score=98.41 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+++.+.++.++.++..|.|-+-..+..+|..+++ +|.++..+-+.+..++..+|.-++.++.|.+|||..|++-
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 6899999999999999999999999999999987 5999999999999999999999999999999999999977
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
++.-+++++..+..
T Consensus 174 a~l~ll~~~~~~~~ 187 (394)
T COG2814 174 AVLALLALLLLWKL 187 (394)
T ss_pred HHHHHHHHHHHHHh
Confidence 77666665554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-08 Score=100.15 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccccc
Q 010589 37 GVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVGWG 108 (506)
Q Consensus 37 ~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g~~ 108 (506)
..++++..+.++|.|...+...+++.|.++++ +|+...++...+.++|.++++.+.+.+. +.++|+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 35777888999999999999999999998765 5899999999999999999998776653 357999
Q ss_pred hhhhhhHHHHHHHHHH
Q 010589 109 LGFGIPAIGMVMSVLA 124 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~ 124 (506)
+.|.+.++..+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998877766555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-08 Score=106.33 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=157.0
Q ss_pred HHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHH
Q 010589 39 LYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGM 118 (506)
Q Consensus 39 ~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~ 118 (506)
..+.+.+++++.+.......++..|+.+ +++ +.+....++.|.+.++|.++|+.++|++.++++|+..|.+.++..
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ 198 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALL 198 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 3346778899999999999999999998 432 245556789999999999999999999999999999999988888
Q ss_pred HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhhhhcc
Q 010589 119 VMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATV 198 (506)
Q Consensus 119 ~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~ 198 (506)
++..+..++.++.-....|.... + . ..+..... .+.. ....+..+
T Consensus 199 ll~~~~~~~~~E~~~~~~~~~~~--------------~-~-------~~~~~~~~------~~~~-----~~~~~~~~-- 243 (468)
T TIGR00788 199 LLQLFVSNLSKERRAFVRPRIGT--------------Y-L-------EMNMALLT------LGVL-----ANVKVQIL-- 243 (468)
T ss_pred HHHHHHHHhcccccccccccccc--------------c-c-------hhhhhhhh------hhHH-----HHHHHHHH--
Confidence 77755444443310000010000 0 0 00000000 0000 00000000
Q ss_pred ccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHhccCCCCcceeCc---cccch
Q 010589 199 TEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGIL-LVTASSHQHSFTIQQARTMNTHLTHSFKIPP---ASLSI 274 (506)
Q Consensus 199 ~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~ii-f~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~---~~~~~ 274 (506)
..|+. -.+|.+.+.+.+ ..+ |........+.+.++. + ..| .++ +.+..
T Consensus 244 -----------~l~~~------l~~~~i~~~l~f---ifl~~~~~~~~~~~~f~~~~---~-~lG----~s~~~~G~~~~ 295 (468)
T TIGR00788 244 -----------GLRGA------IQLLEIAKPLIF---IFLSYANLPGASGSVFCATT---Q-CLP----GGPSFSGMSKV 295 (468)
T ss_pred -----------HHHHH------HhcHHHHHHHHH---HHHHHhhcCCCCceeEEEEc---c-cCC----CCcchhhhHHH
Confidence 00000 001222221111 111 1111111111111110 1 111 122 33445
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHH
Q 010589 275 FGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVF 354 (506)
Q Consensus 275 ~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~ 354 (506)
...+..++...++++. .+|. +..+-+.++.++.+++.+...... .|.+. ..| .-+.+
T Consensus 296 ~~~v~~i~g~~~~~~~----~~~~-------~~r~~l~~~~~l~~~~~~~~~~l~-~~~~~--~~g---------i~~~~ 352 (468)
T TIGR00788 296 VGNLGSLCGVGGYDRF----LKTF-------PYRLLFGVTTLLYTLSSLFDLILV-KRWNL--AFG---------ISDEV 352 (468)
T ss_pred HHHHHHHHHHHHHHHH----HhhC-------CHHHHHHHHHHHHHHHHhCceeee-ecccc--ccC---------CCCee
Confidence 5556666666666553 2332 344456667777776654432110 01110 011 01123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
+.+...++.+++..+.....+.++.+.+|++.+|...|+......+|..+++.++....+
T Consensus 353 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred eeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677777777777789999999999999999999999999999999988887764
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-07 Score=97.56 Aligned_cols=334 Identities=10% Similarity=0.001 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhh--ccc----------
Q 010589 37 GVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYI--QDN---------- 104 (506)
Q Consensus 37 ~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l--~~~---------- 104 (506)
+.+.+++.+.-++.....+...++++|+.++++ ++++.+++++.++.|+|+.+|+.++++. .+.
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~----~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~ 190 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDA----RRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACG 190 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccc
Confidence 445566666777888888888999999999775 2457899999999999999999998875 221
Q ss_pred ---cccchhhhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCccccccccc
Q 010589 105 ---VGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHG 181 (506)
Q Consensus 105 ---~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 181 (506)
.+++..|.+.++.++++.++-.+.-|++...+++.. . +...+..++ ....
T Consensus 191 ~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-~------------~~~~~~~~~------~~~~-------- 243 (477)
T TIGR01301 191 VSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-I------------NSEAAPPSK------HGEE-------- 243 (477)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-h------------hhhcccccc------cchh--------
Confidence 167889999999888888776555444321111000 0 000000000 0000
Q ss_pred ccccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HhccC
Q 010589 182 TLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQAR-TMNTH 260 (506)
Q Consensus 182 ~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~-~~~~~ 260 (506)
.......+..+ .-| |.+.+++..-.+.=+=|..|.+..|.+.-+.- +-+.+
T Consensus 244 ----~~~~~i~~~~~------------~mP------------~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~ 295 (477)
T TIGR01301 244 ----AFFGELFGAFK------------YLP------------RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVN 295 (477)
T ss_pred ----hhHHHHHHHHH------------HCC------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCc
Confidence 00000000000 001 22333333322222223333233333322110 00000
Q ss_pred CCCcceeC---ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH--H
Q 010589 261 LTHSFKIP---PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKK--V 335 (506)
Q Consensus 261 ~~~gf~ip---~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~--~ 335 (506)
-...++-- ..+-...|++... ++..++.++.||.+. ...-..++.++.++|++...++.....+ .
T Consensus 296 ~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~------~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~ 365 (477)
T TIGR01301 296 QGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGA------GKRLWGIVNIILAICLAATVLVTYVAKNSRY 365 (477)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcc------chhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 00000000 1222233433333 344444445555431 1122368888999998887765310000 0
Q ss_pred -hhhcCCCCCCCCCccch-HHHHHHHHHHHHHHHHHHHHHHHHHhHcccCh--hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010589 336 -AANHHLLDDPKAIIPIS-VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPE--SMRSTAVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 336 -~~~~g~~~~~~~~~~~s-~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~--~~~g~~~g~~~l~~aig~~l~~~l~~~ 411 (506)
...++... .+.. .++.+..+.+.|++-.....+=++++.+..|+ +.+|.+||++.++..+...+..+..+.
T Consensus 366 ~~~~~~~~~-----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~ 440 (477)
T TIGR01301 366 YDGDGESLP-----PPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP 440 (477)
T ss_pred ccccccccC-----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0122 35677788999999999999999999999995 566999999999999999998877666
Q ss_pred hhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 412 VHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWF 457 (506)
Q Consensus 412 ~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~ 457 (506)
+.. ++++ +-...+.+-++.++++++..++..|+
T Consensus 441 ~~~-------~~g~------~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 441 WDQ-------LFGG------GNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHH-------HcCC------CCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 442 2221 11344544455666666666666554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-07 Score=97.34 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhh-hccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVY-IQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~-l~~~~g~~~~F~i 113 (506)
+...+++...+.+++.|..-+.....+.|.++++ +|+.++++++.+.++|..+++.+.+. +.++.+|+.+|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3556667778889999998888889999988765 59999999999999999999877665 4456799999999
Q ss_pred hHHHHHHHHHH
Q 010589 114 PAIGMVMSVLA 124 (506)
Q Consensus 114 ~ai~~~~~li~ 124 (506)
.++..++..+.
T Consensus 191 ~~~~~~i~~~~ 201 (438)
T TIGR00712 191 PAICAIIVALF 201 (438)
T ss_pred HHHHHHHHHHH
Confidence 88776665444
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-07 Score=98.03 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCC
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-------ESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLP 424 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-------~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~ 424 (506)
+.++++...++.++++....+...+++.+.++ ++..|...|++.+..-+|..+|+.+...+-...+ +-+
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G----y~~ 393 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD----YVG 393 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCC
Confidence 34455666788999999999999999998876 4567888999998888888888877766544331 111
Q ss_pred CCCCccc--chhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 425 DRNLNRG--RLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 425 ~~~ln~~--~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
+ .-.|+ -....-+.++.+.++..++-+.+..+|+-
T Consensus 394 ~-~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~y~l 430 (444)
T PRK09669 394 G-AAVQSASVLTTINLLFTVIPGVLFAGMAIILNFYKL 430 (444)
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 11121 12344455555555555555555555644
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-07 Score=99.79 Aligned_cols=155 Identities=14% Similarity=0.218 Sum_probs=89.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 010589 272 LSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPI 351 (506)
Q Consensus 272 ~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 351 (506)
+..++.+..++..|+..+ +.+|.++ .+.+.+|+++..++.+.....-. .+ +-
T Consensus 271 ~~~~~~i~~ii~~~~~~~----l~~r~gk-------k~~~~~~~~~~~~~~~~~~~~~~--------~~---------~~ 322 (473)
T PRK10429 271 YLSYAGAANLVTLILFPR----LVKSLSR-------RILWAGASIFPVLSCGVLLLMGL--------AA---------PH 322 (473)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHcCc-------HHHHHHHHHHHHHHHHHHHHHhc--------cC---------ch
Confidence 344455555666666544 4555432 23345566655555544332100 00 12
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCC
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-------ESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLP 424 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-------~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~ 424 (506)
+.++++...++.+++.....+...++..+.+| ++..|.+.|.+.+..-+|..+++.+...+-...+ +-+
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G----y~~ 398 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG----YVP 398 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCC
Confidence 34555666688999999999999999999877 5667779999999988888888777765543321 111
Q ss_pred CCCCcc--cchhHHHHHHHHHHHHHHHHHHH-hhhcccc
Q 010589 425 DRNLNR--GRLEHYYWLVSGIQVINLVYYVI-CAWFYTY 460 (506)
Q Consensus 425 ~~~ln~--~~~~~~~~~la~l~~l~~~i~~~-~~~~y~~ 460 (506)
+-++ ......-++++.+.++..++-.+ +.++|+-
T Consensus 399 --~~~q~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~y~l 435 (473)
T PRK10429 399 --NVEQSAQTLLGMQFIMIGLPTLFFMITLVLYFRYYRL 435 (473)
T ss_pred --CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeC
Confidence 1122 12344555555555555444333 3345644
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-07 Score=95.23 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccccch
Q 010589 38 VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVGWGL 109 (506)
Q Consensus 38 ~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g~~~ 109 (506)
.+++...+.++|.|+.-|...+++.+.++++ +|+...+....+..+|.+++..+..++. +++|||+
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKN------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 5777888999999999999999999988765 5888888888899999998877666654 3589999
Q ss_pred hhhhhHHHHHH
Q 010589 110 GFGIPAIGMVM 120 (506)
Q Consensus 110 ~F~i~ai~~~~ 120 (506)
.|.+.++..++
T Consensus 201 ~f~~~~~~~l~ 211 (438)
T PRK09952 201 PFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHH
Confidence 99987765433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-07 Score=97.80 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=89.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
.+.+++.+..++..++..+ +.+|.+ +.+.+..+.++.+++++..+..
T Consensus 266 ~~~~~~~~~~~~~~~~~g~----l~dr~g-------~~~~~~~~~~l~~~~~~l~~~~---------------------- 312 (420)
T PRK09528 266 YLNSFQVFLEALIMFFAPF----IINRIG-------AKNALLLAGTIMAVRIIGSGFA---------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------cchhhHHHHHHHHHHHHHHHhc----------------------
Confidence 4455555555566565555 455543 2234667777777776665542
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVAL-YWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~-~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+.+.+.+..
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------------- 379 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------------- 379 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 2456677778889998888888888999999999999887654 66677788888887776665321
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVIC 454 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~ 454 (506)
.+...|..++++.++..++.++.
T Consensus 380 --G~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 380 --GFQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred --CchHHHHHHHHHHHHHHHHHHHH
Confidence 12455666677666666555543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-06 Score=88.65 Aligned_cols=77 Identities=8% Similarity=0.024 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHH-HHHhhHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIAT-LTALTVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~-~i~~~~~~~l~~~~g~~~~F~i 113 (506)
+.+.+++...+.++|.+..-+...+.+.+.++++ +|+++.+++..+.++|. .+++.+.+++.+..||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 3566667777778888777777777777777654 69999999999999996 6899999999888897666554
Q ss_pred hHHH
Q 010589 114 PAIG 117 (506)
Q Consensus 114 ~ai~ 117 (506)
....
T Consensus 178 ~~~~ 181 (402)
T TIGR00897 178 ALAF 181 (402)
T ss_pred HHHH
Confidence 4433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.2e-07 Score=93.66 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc------ccccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD------NVGWG 108 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~------~~g~~ 108 (506)
+.+.++++..+.++|.|..-|...+.+.+.++++ +|+.+.+++..+.++|..+++.+++++.+ ..||+
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 4677888999999999999898888889888854 69999999999999999999999988753 46999
Q ss_pred hhhhhhHHHHHHHHHHH
Q 010589 109 LGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~f 125 (506)
+.|.+.++..++..++.
T Consensus 169 ~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99998777665544433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.3e-07 Score=95.26 Aligned_cols=85 Identities=13% Similarity=0.222 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc-----------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD----------- 103 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~----------- 103 (506)
+...++++..+.++|.|+.-|....++.+.++++ +|+++.++++.+.++|.++++.+..++..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 3567889999999999999999999999999876 59999999999999999999887765421
Q ss_pred ------------ccccchhhhhhHHHHHHHHHHH
Q 010589 104 ------------NVGWGLGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 104 ------------~~g~~~~F~i~ai~~~~~li~f 125 (506)
..+||+.|.+.++..++..+..
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 2479999987777665554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-07 Score=92.31 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc--ccchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV--GWGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~--g~~~~F~ 112 (506)
+.+.++++..+.++|.|...+...+.+.|.++ + +|.++++++..+.++|..+++.+.+.+.++. +|++.|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-Q------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-c------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 35667788888999999888888888877764 2 5899999999999999999999998887765 3888887
Q ss_pred hhHHHHHHH
Q 010589 113 IPAIGMVMS 121 (506)
Q Consensus 113 i~ai~~~~~ 121 (506)
+.++..++.
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 666544443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=3e-07 Score=98.16 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc---ccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV---GWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~---g~~~~F 111 (506)
+.+.+++...+.+++.|..-|...+.+.|.++++ +|+.+++++..+.++|..+++.+..++.+.. +|+..|
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f 194 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF 194 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence 5777888888999999999999999999999876 5999999999999999999998887776543 688888
Q ss_pred hhhHHHHHHHHH
Q 010589 112 GIPAIGMVMSVL 123 (506)
Q Consensus 112 ~i~ai~~~~~li 123 (506)
.+.++..++..+
T Consensus 195 ~~~g~~~~~~~i 206 (467)
T PRK09556 195 IFPSIIALIIGF 206 (467)
T ss_pred HHHHHHHHHHHH
Confidence 876665554333
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-06 Score=91.10 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc--------cccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ--------DNVG 106 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~--------~~~g 106 (506)
++..+.+...+.++|.|+.-|...+++.|.++++ +|+.+.++.+.+.++|.++++.+.+.+. ..+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 3456788899999999999999999999999865 5888999999999999999987765554 2589
Q ss_pred cchhhhhhHHHHHHH
Q 010589 107 WGLGFGIPAIGMVMS 121 (506)
Q Consensus 107 ~~~~F~i~ai~~~~~ 121 (506)
||+.|.+.++..++.
T Consensus 197 Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 197 WRIPFALGAVLAVVA 211 (432)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999876655443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.9e-07 Score=96.74 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-cccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-VGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 113 (506)
+.+.+.+...+.+++.|..-|++..+.+.-.+++ +|.++.++.+.+..+|.+++.-++|++-+. .||+..|.+
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~------Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPN------ERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 3446678899999999999999999999998876 599999999999999999999999999998 999999998
Q ss_pred hHHHHHHHHHHHHh
Q 010589 114 PAIGMVMSVLAFVF 127 (506)
Q Consensus 114 ~ai~~~~~li~f~~ 127 (506)
.++..++-.+++++
T Consensus 201 ~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 201 FGIVGLIWFILWFL 214 (466)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877665555444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-06 Score=91.19 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhh--------ccccccch
Q 010589 38 VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYI--------QDNVGWGL 109 (506)
Q Consensus 38 ~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l--------~~~~g~~~ 109 (506)
.++++..+.++|.|..-|+..+++.|.++++ +|.++.+++..+.++|..+++.+++.+ .+++||++
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 4677888999999999999999999999865 599999999888888888887776665 25689999
Q ss_pred hhhhhHH
Q 010589 110 GFGIPAI 116 (506)
Q Consensus 110 ~F~i~ai 116 (506)
.|.++++
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-06 Score=91.09 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=95.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
...+++.+..++...+..+ +.+|.+ +.+-+.++.++.++++....... + ..
T Consensus 255 ~~~~~~~i~~i~~~~~~g~----l~dr~g-------~r~~l~~~~~~~~v~~~l~~~~~----------~--------~~ 305 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPF----FLKRFG-------IKKVMLLSLVAWALRFGFFAYGD----------P--------EY 305 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHcC----------c--------ch
Confidence 3444555555555555554 445542 33346677777777765554411 0 01
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYW-IAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~-l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.+++.++...++.++++.+..+....++.+.+|++.|+.++|+.. ...++|..+|+.+.+.+.+..++ .+
T Consensus 306 ~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~---------~~ 376 (418)
T TIGR00889 306 FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA---------YG 376 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc---------cc
Confidence 123345566789999999999999999999999999999999996 67889999998888766532110 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
-.+++.-|...+++.++..++++++.|
T Consensus 377 ~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 377 TFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 002355566777777777766666654
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-07 Score=91.99 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHh--hhhccccccchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVV--VYIQDNVGWGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~--~~l~~~~g~~~~F~ 112 (506)
+.+.+.+-..+.+.-+|.--|...-+++.-|+.+ +|++..+++..+.|+|..+.+.++ +++..+++|+.+|.
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 5666777777778888888899999999999876 599999999999999999999999 99999999999999
Q ss_pred hhHHH-HHHHHHHHHhcCc
Q 010589 113 IPAIG-MVMSVLAFVFGSP 130 (506)
Q Consensus 113 i~ai~-~~~~li~f~~~~~ 130 (506)
+|++. ++++++.+...|.
T Consensus 190 ~pgiiaiival~~~~~~rd 208 (448)
T COG2271 190 FPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 99975 4556666666664
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-07 Score=100.30 Aligned_cols=252 Identities=12% Similarity=-0.054 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchh---
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLG--- 110 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~--- 110 (506)
+.+...+.+..++++.++.+++.+++.+++.+..+ ++++.+.+++|||..+.+.+.+. ++..+..... +...
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~~fg~ 156 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVGCFGC 156 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccc
Confidence 47777789999999999999999999999998765 35677899999999999997764 4444444333 3322
Q ss_pred ----hhhhHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccc
Q 010589 111 ----FGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHT 186 (506)
Q Consensus 111 ----F~i~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~ 186 (506)
++..++.+++.++.++.+...+++.++.+.+...+.+++.......+.
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~---------------------------- 208 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK---------------------------- 208 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH----------------------------
Confidence 236667777788888888877766655544433344444333222110
Q ss_pred cchhhhhhhhccccCccCCCCCCCcccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCc
Q 010589 187 NQFKWLDKAATVTEGETTNSSPPNLWRL--ATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHS 264 (506)
Q Consensus 187 ~~~~~l~~a~~~~~~~~~~g~~~~~~~~--~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~g 264 (506)
+... .. ......|.. ....++++++...+++.++...+.+|+.+.|.......+..++++..+ .
T Consensus 209 -------~~~~-~~-----~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~ 274 (654)
T TIGR00926 209 -------RFST-RS-----EHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-D 274 (654)
T ss_pred -------hhcc-CC-----cccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-c
Confidence 0000 00 000012211 123345678999999999999999999999988889999999998865 5
Q ss_pred ceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 265 FKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKV 335 (506)
Q Consensus 265 f~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~ 335 (506)
+...+...+.++++-.++.+|+...+-+|+++++. ..-.+++++.-+.+.+.++.+..++++..+.+.
T Consensus 275 l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~---~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~ 342 (654)
T TIGR00926 275 VGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIA---KCGTRFTSLRKMAVGGLLAALSFFVAALVQLKV 342 (654)
T ss_pred cCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHH---hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556678899999999999999998899999974 222357789999999999999999988766654
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-06 Score=91.13 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
-+.+|.++.++++...... .+++++++..++.+++.........++..+..|++.++.
T Consensus 286 ~l~~~~~l~~l~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at 343 (396)
T TIGR00882 286 ALLIAGTIMSVRIIGSSFA----------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSAT 343 (396)
T ss_pred hHHHHHHHHHHHHHHHHhc----------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 3667777777766544331 246667777888999887777777788888889999888
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 010589 390 AVAL-YWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYV 452 (506)
Q Consensus 390 ~~g~-~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~ 452 (506)
..+. +.....+|+.+++.+.+...+.. .+...|.+.+++.++..++-.
T Consensus 344 ~~~~~~~~~~~lg~~~~~~l~G~l~~~~---------------G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 344 IYLIGFQFAKQLAMIFLSTLAGNMYDSI---------------GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred eehHHHHHHHHHHHHHHHHhHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHH
Confidence 6665 55778888888877776665321 135556666666666655543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.74 E-value=5e-06 Score=86.37 Aligned_cols=54 Identities=9% Similarity=-0.106 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhc
Q 010589 75 RKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFG 128 (506)
Q Consensus 75 ~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~ 128 (506)
+++.+.+...++..+|.++|+.+.+++.+++||+..|++.++..++..+..++.
T Consensus 130 ~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 130 TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 456666777888899999999999999999999999999888777666554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.9e-06 Score=87.14 Aligned_cols=81 Identities=10% Similarity=0.124 Sum_probs=54.5
Q ss_pred HHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-------cccchhh
Q 010589 39 LYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-------VGWGLGF 111 (506)
Q Consensus 39 ~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-------~g~~~~F 111 (506)
+++...+..++..++.....++.+++-++.+ +|.+..++...+.++|.++++++...+.+. .||....
T Consensus 112 ~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~ 186 (460)
T PRK11462 112 AAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGI 186 (460)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence 4444445577777777888888888876543 799999999999999988887765433322 2466655
Q ss_pred hhhHHHHHHHHHH
Q 010589 112 GIPAIGMVMSVLA 124 (506)
Q Consensus 112 ~i~ai~~~~~li~ 124 (506)
.+.++..+++..+
T Consensus 187 ~i~~ii~~i~~~i 199 (460)
T PRK11462 187 AVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444433
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.8e-07 Score=90.39 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=96.6
Q ss_pred CchhhHHHHHHhhCCCCCCCCCCCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHH
Q 010589 1 MSQGLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFF 80 (506)
Q Consensus 1 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f 80 (506)
|++|++++++|+.+..-. .+++.++++..+-++|.++..++-.++++|.|+++. +|++++
T Consensus 139 m~~Gl~vmf~sTilFafg---------------~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vm 198 (464)
T KOG3764|consen 139 MVAGLFVMFLSTILFAFG---------------NSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVM 198 (464)
T ss_pred HHHHHHHHHHHHHHHHHc---------------chhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHH
Confidence 678999999999887743 268899999999999999999999999999999875 699999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHh
Q 010589 81 NWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 81 ~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~ 127 (506)
++---++.+|.++||-.+|.+.|-.|+++-|+++++.+++...+-++
T Consensus 199 GialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 199 GIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999986665444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.9e-06 Score=86.51 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc------cccccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ------DNVGWG 108 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~------~~~g~~ 108 (506)
+.+.+.+-..+.++-.+..-|+....++.-|.++ +|..-+++||.+.++|.++|.++...+. ...||+
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~ 206 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR 206 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence 5777888899999999999999999999999865 5999999999999999999999887753 358999
Q ss_pred hhhhhhHHHHHHHHHH-HHhc
Q 010589 109 LGFGIPAIGMVMSVLA-FVFG 128 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~-f~~~ 128 (506)
|.|.+.++.+++..++ |++.
T Consensus 207 ~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 207 WLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred eehhHHHHHHHHHHheEEEEe
Confidence 9999999887775544 4433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-05 Score=79.42 Aligned_cols=271 Identities=15% Similarity=0.191 Sum_probs=156.5
Q ss_pred cchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhh
Q 010589 33 GLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFG 112 (506)
Q Consensus 33 ~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~ 112 (506)
........++..++++|.+...+...++.+|.-+++ +|.+..++-|.+.-+|..++.++.+.+-+.++..-..-
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~ 159 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQ 159 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 344555667777888888889999999999998876 69999999999999999999999988777665443332
Q ss_pred hh----HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccc
Q 010589 113 IP----AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQ 188 (506)
Q Consensus 113 i~----ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~ 188 (506)
+. .+.+++.++ -+++.+. +..+ +. ..++++ .
T Consensus 160 v~~~~a~i~~~l~~i-a~wg~E~-----r~~~---------------~~-~~~~~~-----------------------~ 194 (403)
T PF03209_consen 160 VIQGVALIALLLNLI-ALWGQEP-----RRSR---------------RA-AAAERP-----------------------R 194 (403)
T ss_pred HHHHHHHHHHHHHHH-HHHhccc-----CCcc---------------cc-cCCCCC-----------------------C
Confidence 22 222222221 1223221 1100 00 000000 0
Q ss_pred hhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeC
Q 010589 189 FKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIP 268 (506)
Q Consensus 189 ~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip 268 (506)
..+.+...... .+ .+.++++.++ ++...-| ..|+--+....++.|.+|
T Consensus 195 ~~f~~a~~~~~------------------~~-~~a~~f~~fl--~l~t~a~-----------~~QD~iLEPygg~Vfgms 242 (403)
T PF03209_consen 195 PPFREAWRQVW------------------AS-PQARRFFVFL--FLGTLAF-----------FMQDVILEPYGGEVFGMS 242 (403)
T ss_pred ccHHHHHHHHH------------------hC-CChhHHHHHH--HHHHHHH-----------HhhHHHcCCchhHHcCCC
Confidence 00111111000 00 1123332111 1111111 122222221111223344
Q ss_pred cc---ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 010589 269 PA---SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP 345 (506)
Q Consensus 269 ~~---~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~ 345 (506)
++ .++.+-....++...+..+.. .+|. .+.+.-.+|....++++....+...
T Consensus 243 v~eTT~Lta~~~~G~L~G~~~~g~~l---~~~~-------~~~~~a~~G~~~~~~~f~lii~a~~--------------- 297 (403)
T PF03209_consen 243 VGETTRLTAFWGGGTLLGMLLAGFLL---SRRL-------GKKRTAALGCLLGALAFALIILAGP--------------- 297 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-------CchHHHHHHHHHHHHHHHHHHHHHh---------------
Confidence 43 344455555666555555532 2221 2223344677777777766544320
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 346 KAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKY 415 (506)
Q Consensus 346 ~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~ 415 (506)
.-+.|.+.+..+++|+|-.+.....++..-+++++...|+.||+|..+.+++..++..++....+.
T Consensus 298 ----~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 298 ----LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred ----cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 114556788999999999999999999999999999999999999999988888877777666544
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-05 Score=80.17 Aligned_cols=86 Identities=7% Similarity=-0.086 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc---------
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN--------- 104 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~--------- 104 (506)
.+++.+.+++.+++.|.++..+...+++++.-+++ ++.+..++...+..+|++++|++.+.+..+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 47889999999999999999999999999998765 478888999999999999999999876632
Q ss_pred -------cccchhhhhhHHHHHHHHHHH
Q 010589 105 -------VGWGLGFGIPAIGMVMSVLAF 125 (506)
Q Consensus 105 -------~g~~~~F~i~ai~~~~~li~f 125 (506)
..|++.|.+.++..++..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888885555444433333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-05 Score=84.84 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ 102 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~ 102 (506)
+.+.+++++.+.++|.|...+...+++.|..+++ +|....+++.....+|..+|+.+++.+.
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999764322 4555678888889999999998876543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-05 Score=81.33 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc-----------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD----------- 103 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~----------- 103 (506)
+.+.+++++.+.++|.|...+...+.+.+..+++ +|.+..++.....++|..+|+.+++.+..
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 5788889999999999999999999988876544 47777889999999999999999887732
Q ss_pred ---------------ccccchhhhhhHHHHHHHHHH
Q 010589 104 ---------------NVGWGLGFGIPAIGMVMSVLA 124 (506)
Q Consensus 104 ---------------~~g~~~~F~i~ai~~~~~li~ 124 (506)
..+|++.|.+.++..++..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246999998776655444333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.2e-05 Score=82.12 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc----------
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV---------- 105 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~---------- 105 (506)
...++++.++.++|.+..-+...+++.|.++++ +|..++++++.+.++|..+|+++++++.+.+
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~ 245 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTED 245 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCC
Confidence 556778999999999999999999999999865 5999999999999999999999999887543
Q ss_pred ------------ccchhhhhhHHHHHHHHHHHHhcC
Q 010589 106 ------------GWGLGFGIPAIGMVMSVLAFVFGS 129 (506)
Q Consensus 106 ------------g~~~~F~i~ai~~~~~li~f~~~~ 129 (506)
+|+++|.+.++..++..+.+++..
T Consensus 246 ~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 246 VILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 278889888877666555444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-05 Score=81.89 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc----------c
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD----------N 104 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~----------~ 104 (506)
+.+.++++..+.+++.+.+ +...++++|.++++ +|..+.+++..+.++|..+++.+.+.+.. +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4677788888889987766 44677888888754 58999999998899999888887766554 3
Q ss_pred cccchhh-hhhHHHH
Q 010589 105 VGWGLGF-GIPAIGM 118 (506)
Q Consensus 105 ~g~~~~F-~i~ai~~ 118 (506)
.+|++.| .+.++..
T Consensus 163 ~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 163 LAWGWAFVIVPAGIL 177 (366)
T ss_pred ccccchhHHHHHHHH
Confidence 4899999 4434333
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-05 Score=82.09 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
.....+.+.+..+|.........+++.+.-..++. +++.--++.|.+..+|++++..+.|++.++.+++..|.+++
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 44455667778899988888888888888766642 37777889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCc
Q 010589 116 IGMVMSVLAFVFGSP 130 (506)
Q Consensus 116 i~~~~~li~f~~~~~ 130 (506)
+..++..+..++..+
T Consensus 162 ~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 162 ALPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHHhhh
Confidence 877766655444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00011 Score=77.82 Aligned_cols=337 Identities=13% Similarity=0.102 Sum_probs=177.7
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHh--hhhccccccchhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVV--VYIQDNVGWGLGFG 112 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~--~~l~~~~g~~~~F~ 112 (506)
..-++.+|..+.++..|........++.+.-|++ .|+..=+..-+++++|.+++..++ ..+...-.|++.+.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~ 188 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA 188 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence 5677889999999999999999999999887765 588888888999999999996544 34556678999999
Q ss_pred hhHHHHHHHHHHHHhcCcc--eeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCc-ccccccccccccccch
Q 010589 113 IPAIGMVMSVLAFVFGSPL--YVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGEL-DSVISVHGTLVHTNQF 189 (506)
Q Consensus 113 i~ai~~~~~li~f~~~~~~--~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~l~~~~~~ 189 (506)
.+.+..++.++...+.-+. |...+ ++ ...+.-| +++ .|...+. +.. .+..
T Consensus 189 ~~~i~~~~~l~~l~~~PESPk~Ll~~-k~-~~~~A~~----sl~------------~y~G~~~~~~~---------~e~~ 241 (485)
T KOG0569|consen 189 FPLIPALLQLALLPFLPESPKYLLIK-KG-DEEEARK----ALK------------FYRGKEDVEAE---------IEEM 241 (485)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHH-cC-CHHHHHH----HHH------------HHhCCCcchhH---------HHHH
Confidence 9888877777765554321 11100 00 0001000 000 1111000 000 0000
Q ss_pred hhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHHHHhccCCCCccee
Q 010589 190 KWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSF--TIQQARTMNTHLTHSFKI 267 (506)
Q Consensus 190 ~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~--~~~~~~~~~~~~~~gf~i 267 (506)
....+.+... .......+++++. ++..+. +++...+ ...+|..+. ..++...+-.+- |++.
T Consensus 242 ~~e~~~~~~~-----~~~~~sl~~~~~~------~~lR~~--~~i~~~v--~~~qq~sGi~ai~~Yst~i~~~a--G~~~ 304 (485)
T KOG0569|consen 242 LREIEEEELE-----KKKQISLRQLLKN------PTLRRP--LLIGIVV--SFAQQFSGINAIFFYSTSIFKTA--GFTP 304 (485)
T ss_pred HHHHHHhccc-----cccCCcHHHHhcC------cchhHH--HHHHHHH--HHHHHhcCcceeHHHHHHHHHHc--CCCH
Confidence 0000000000 0001112211111 111111 1111111 112233321 112222222222 3333
Q ss_pred Cccccchh-----hHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010589 268 PPASLSIF-----GILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLL 342 (506)
Q Consensus 268 p~~~~~~~-----n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~ 342 (506)
+.+...+. |.+..++... +.+|.++| | -+.++..++.++.+++.+.+..... .
T Consensus 305 ~~a~~an~~~g~v~~~~t~~~~~--------lid~~gRR-----p--Lll~~~~~~~~~~~~~~~~~~l~~~-----~-- 362 (485)
T KOG0569|consen 305 EEAQYANLGIGIVNLLSTLVSPF--------LIDRLGRR-----P--LLLISLSLMAVALLLMSIALFLSNS-----F-- 362 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHhcCCc-----H--HHHHHHHHHHHHHHHHHHHHHHHHH-----h--
Confidence 32222222 2222222222 33444322 2 3566666666666655554432111 0
Q ss_pred CCCCCCccchH-HHH-HHHHHHHHHHHHHH-HHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 010589 343 DDPKAIIPISV-FWL-VPQYCLHGVAEVFM-SVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSK 419 (506)
Q Consensus 343 ~~~~~~~~~s~-~wl-i~~~~l~~igEl~~-sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~ 419 (506)
. ++ +|. +...++..++..+. .|+..=+...+.|++.|+.++++-....-..+.+-+.....++..
T Consensus 363 -------~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~---- 430 (485)
T KOG0569|consen 363 -------G-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNV---- 430 (485)
T ss_pred -------h-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1 23 232 34444444444443 788888889999999999999999888888888766665555432
Q ss_pred CCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccccCcccc
Q 010589 420 NNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEVC 467 (506)
Q Consensus 420 ~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~~~ 467 (506)
++ .++|..+++.+++.++..++..|.=|.|..+|..
T Consensus 431 ---~g---------~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~ 466 (485)
T KOG0569|consen 431 ---IG---------PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEII 466 (485)
T ss_pred ---hc---------chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 11 4778889999998888888888875555555553
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00019 Score=75.60 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=78.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHccc------
Q 010589 309 QRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQS------ 382 (506)
Q Consensus 309 ~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~a------ 382 (506)
+-+.+|.++..++.+...+.. .-+.++.+...++.++|-....+.--+++.+.+
T Consensus 303 ~~~~~~~~~~~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~ 362 (467)
T COG2211 303 KLFLIGLLLLAVGYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK 362 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHH
Confidence 346778888888887776632 124555666668888888888777766666544
Q ss_pred -ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC-ccc--chhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 383 -PESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL-NRG--RLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 383 -P~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l-n~~--~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
-++..|..-|...+..=+|..+++.+..+.-... ++.+ |. +|. .+...-.+.+.+-++..++.+...+.|
T Consensus 363 TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~----Gyv~--~~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~~y 436 (467)
T COG2211 363 TGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI----GYVP--NVSAQSASALFGIRFLFIILPALLLLLAAIIIFFY 436 (467)
T ss_pred hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788888888877777777776665544221 2222 22 232 234555555556555555555556655
Q ss_pred ccc
Q 010589 459 TYK 461 (506)
Q Consensus 459 ~~~ 461 (506)
+..
T Consensus 437 ~L~ 439 (467)
T COG2211 437 KLN 439 (467)
T ss_pred cCC
Confidence 443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3e-06 Score=87.43 Aligned_cols=149 Identities=21% Similarity=0.261 Sum_probs=115.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+.+|..-.+.-++..|++.. +..|+ ++.+-|++|..+=+++.+..+...
T Consensus 71 Gll~~vf~v~~~i~sPl~gy----Ladry-------NR~~v~~vG~~iW~~Av~~~~fs~-------------------- 119 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGY----LADRY-------NRKRVIAVGIFIWTLAVFASGFSN-------------------- 119 (493)
T ss_pred cchhHHHHHHHHHHHHHHHH----HHhhc-------CcceEEeeHHHHHHHHHHHHHHHH--------------------
Confidence 56777777778888899887 45554 456679999999998888776631
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
+.|-+++.=.+.|+||...+|...+++.+..|+..||+++++|+++.-+|+.+|...+..+...+. .|-
T Consensus 120 --~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~---~Wr------ 188 (493)
T KOG1330|consen 120 --HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF---WWR------ 188 (493)
T ss_pred --HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc---ceE------
Confidence 344445688999999999999999999999999999999999999999999999988888775431 242
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccccCcc
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEE 465 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~ 465 (506)
+=|++-++++++.+++..++.+.=.++++++
T Consensus 189 -----~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 189 -----WAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred -----EEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 2267788888888887777766544443333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00077 Score=73.40 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+...+..|..+.++|.|... .....++|..+.+ .|..++.+..+..-+...+++.++..+..+-+|||.|++.
T Consensus 130 ~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 56678889999999988776 3455688998754 3555555544444344445566655555667999999999
Q ss_pred HHHHHHHHHHHHh
Q 010589 115 AIGMVMSVLAFVF 127 (506)
Q Consensus 115 ai~~~~~li~f~~ 127 (506)
++...++++..++
T Consensus 203 ~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 203 IIWSGIALVLIFF 215 (599)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887765433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0038 Score=66.83 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 358 PQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT 416 (506)
Q Consensus 358 ~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~ 416 (506)
+.-++.|+.-.-..+.+=++..++.|+...+...|+|.++.=..+.+|+++.+++.+.+
T Consensus 385 ~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 385 VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467888888889999999999999999999999999999999999999999988655
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.8e-05 Score=76.12 Aligned_cols=137 Identities=19% Similarity=0.116 Sum_probs=98.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..++ .+|.++ .+-+.++.++.+++.+..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l----~d~~g~-------r~~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWL----LDRFGA-------RKTLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHhcCc-------ceeeHHHHHHHHHHHHHHHHH---------------------
Confidence 466777777777777777663 445432 223566777777776665542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.+.++++...++.|++.....|....++.+..|++.|+..++.+.....+|..+++.+...+.... +
T Consensus 80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----~-------- 146 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF----S-------- 146 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC----C--------
Confidence 256777888899999999999999999999999999999999999999999999988887554211 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVIC 454 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~ 454 (506)
....|+..+++.++..++..+.
T Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 147 ---WQWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred ---chHHHHHHHHHHHHHHHHhhhe
Confidence 2455666666665555544443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00031 Score=75.65 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=85.7
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+...-+.++++..+++.++.... .+.+-++..-++.|+..............+..+..
T Consensus 363 ~~~~~~~~~ll~~gl~~~~~p~~----------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~ 420 (509)
T KOG2504|consen 363 RALVLFLLTLLIAGLARLFLPFA----------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE 420 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 34555667777777776544442 23444666668888888888887777888888898
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
.-+-+.|+-.+..+++.++|+.+...+.+.+. .|+..|...+...+++++.+++....++++
T Consensus 421 ~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--------------~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~ 482 (509)
T KOG2504|consen 421 KLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--------------NYDHAFYFCGLCFLLSAVLLLILRECLKRR 482 (509)
T ss_pred hcchHHHHHHHHhHHHHHcCcccceeeeeccC--------------CeeeehhhcChHHHHHHHHHHHhHHHHHhc
Confidence 88999999999999999999988886665431 256667777777777777666655334433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=75.46 Aligned_cols=111 Identities=8% Similarity=0.007 Sum_probs=84.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..++... +.+|.+ +.+-+..++++.+++.+..+..
T Consensus 47 g~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 94 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLML----LTSNVE-------RRKLLIGLFVLFIASHVLSALA--------------------- 94 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCC-------hHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34455555555565555554 445543 3445777888888887666552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++++++.....|...+++.+..|++.|+.++|++.....+|..+++.+.....
T Consensus 95 -~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 95 -WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 256677777889999999999999999999999999999999999999999999988887654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00026 Score=73.72 Aligned_cols=111 Identities=21% Similarity=0.180 Sum_probs=83.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..++..+ +.+|.+ +.+-+..+.++.+++.+.....
T Consensus 53 g~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 100 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGR----LADRIG-------RKRILIVSVALFGLFSLATAQA--------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------CchhHHHHHHHHHHHHHHHHHh---------------------
Confidence 45666677777777777666 445543 2233666777766666554431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....|...+.+.+..|++.|+..++++.....+|..+++.+.....
T Consensus 101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 256677788899999999999999999999999999999999999999999999887775543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=75.78 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=84.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..++..+ +.+|.+ +.+-+..++++.+++.+..++.
T Consensus 47 ~~~s~~~~~~~~~~~~~g~----l~dr~G-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 93 (412)
T TIGR02332 47 LAATLFYAAYVICGIPSNI----MLAIIG-------ARRWIAGIMVLWGIASTATMFA---------------------- 93 (412)
T ss_pred HHHHHHHHHHHHHHhhHHH----HHHHhC-------hHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 4455555566666666655 445543 2224677888888877776652
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|+++....|....++.+..|++.|+..+|++....++|..++..++....
T Consensus 94 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 94 TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246678888999999999999999999999999999999999999999999999988876654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0023 Score=69.21 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+.+...+.+++.+....+...+++|.+.++ +|..+.++ +.....|..+++...+|+.. +|++.+++.
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~ 240 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII 240 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 6888999999999999999999999999999987 58888888 88888899999999999876 899999988
Q ss_pred HHHHHHHHHH
Q 010589 115 AIGMVMSVLA 124 (506)
Q Consensus 115 ai~~~~~li~ 124 (506)
.+..++.++.
T Consensus 241 ~~~~~~~~~~ 250 (521)
T KOG0255|consen 241 SIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHH
Confidence 8776666555
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00044 Score=73.01 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=83.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..+ +.+|.+ +.+-+.+++++.+++.+..+..
T Consensus 61 g~~~~~~~~~~~~~~~~~G~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 108 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGI----VSDRSN-------ARYFMGIGLIATGIINILFGFS--------------------- 108 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhH----HHhhcC-------CchhHHHHHHHHHHHHHHHHHH---------------------
Confidence 44555666666777777666 455543 2234677888888877665552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
-+.+.++...++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 109 -~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 109 -SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred -hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 145556666788899999888999999999999999999999999999999999988777664
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00018 Score=72.69 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=98.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ .+|.+ +.+-+.++.++.+++.++..+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~--------------------- 82 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYL----SDRFG-------RRRVLIIGLLLFALGSLLLAFA--------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHS--------HHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHcC-------CeeeEeehhhhhhhHHHHhhhh---------------------
Confidence 456666777777777777764 44432 3335778888888885444431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.+.++++...++.|+++....|....++.+..|++.|+..++.+.....+|..+++.+........ +
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~----~-------- 149 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF----G-------- 149 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC----H--------
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc----c--------
Confidence 134478888999999999999999999999999999999999999999999999998887765211 1
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 010589 430 RGRLEHYYWLVSGIQVINLVY 450 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i 450 (506)
....|++.+++.++..++
T Consensus 150 ---~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 150 ---WRWAFLISAILSLIAAIL 167 (352)
T ss_dssp ---HCCHHHHHHHHHHHHHHH
T ss_pred ---cccccccccchhhhhhhh
Confidence 134466677777766654
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0015 Score=66.09 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcccc-ccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNV-GWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~-g~~~~F~i 113 (506)
+...++.+-.+++.|.+....-+++.+-+-|++ |-+...++|-.++++|+.+++.++..+.++. ||+.+...
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-------~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-------RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-------chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 577889999999999999888888888777764 4788899999999999999999999988887 79987776
Q ss_pred hHHHHHHHHHHHH
Q 010589 114 PAIGMVMSVLAFV 126 (506)
Q Consensus 114 ~ai~~~~~li~f~ 126 (506)
=+...++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=77.06 Aligned_cols=142 Identities=13% Similarity=0.226 Sum_probs=96.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
.....+-..=+++-++..+ +.+|.+ ....|..|+.+.++=++.+..++
T Consensus 410 v~~a~~~~gEI~~~ffs~k----lI~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~--------------------- 457 (618)
T KOG3762|consen 410 VVSALCHAGEILFYFFSFK----LIEKIG-------HVNVMYLGLACNVGRFLYYSYLQ--------------------- 457 (618)
T ss_pred ehhhhhccchHHHHHHHHH----HHHHhc-------ccceeeehhhHHHHHHHHHHHhc---------------------
Confidence 4445555555555555555 456653 44557888888888887776643
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIA-ISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~-~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
++|..+|--+++++.-..+.....+++...+|++++..++|+.-.. .++|-.+|++++..+.. .+..
T Consensus 458 -n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~-------~fg~---- 525 (618)
T KOG3762|consen 458 -NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE-------RFGA---- 525 (618)
T ss_pred -CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe-------eehh----
Confidence 4655667779999999999999999999999999999999987664 35555565555554431 1222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
...|+.+++.+++..+++..+-+..++
T Consensus 526 ----~ttf~~~giAcl~~l~~~~~iq~~l~~ 552 (618)
T KOG3762|consen 526 ----RTTFRIFGIACLVTLALFISIQLLLKR 552 (618)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 566777777777666666665554443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0003 Score=72.53 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=111.6
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
.+++.+...+.+.+..|+...+ .+|+ ++.+-+...+.+..+|-++.++.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~l----t~r~-------~Rr~lLl~~l~lFi~~n~l~alA-------------------- 98 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALL----TGRL-------ERRRLLLGLLALFIVSNLLSALA-------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hccc-------chHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 4788899999999999998773 3332 23333555666777777777763
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
-+.+.++..=++.+++-....+++.+.+.+++|++.|+.++|+-+....++..+|.-++.++.+.- +|
T Consensus 99 --p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~----GW------ 166 (394)
T COG2814 99 --PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF----GW------ 166 (394)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh----hH------
Confidence 367788999999999999999999999999999999999999999999999999988888776432 34
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..-|+..++++++..+..+...|
T Consensus 167 -----R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 -----RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34477788888888777777766
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00017 Score=74.00 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=84.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..+ +.+|.+ +.+-+..+.++.+++.+..+..
T Consensus 43 g~~~~~~~~~~~~~~~~~g~----l~d~~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 90 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGP----LSDRYG-------RRPVLLLGLFIFALSSLGLALS--------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhh----HHHhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566666667777777665 344432 2334667777777777665542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+...+++.+..|++.|+..+|.+.....+|..+++.+...+.
T Consensus 91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667778899999999999999999999999999999999999999999999988887654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00022 Score=73.19 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc---cchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG---WGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g---~~~~F 111 (506)
+++.+++.-++++++.|-|...+ +++..-|+++ +++.+..++- +-|+|..+...+.+.+....| |+..-
T Consensus 104 ~~~~ll~~gll~G~~GasFav~m-~~~s~~fP~~------~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~ 175 (417)
T COG2223 104 STWQLLVIGLLLGLAGASFAVGM-PNASFFFPKE------KQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA 175 (417)
T ss_pred chHHHHHHHHHHhcccceehccc-ccccccCChh------hhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34666666667777776665444 4456677765 6899999999 889999999999999999999 99999
Q ss_pred hhhHHHHHHHHHHHHhcCc
Q 010589 112 GIPAIGMVMSVLAFVFGSP 130 (506)
Q Consensus 112 ~i~ai~~~~~li~f~~~~~ 130 (506)
.+..+.++++.+.++++.+
T Consensus 176 ~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 176 GIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999998888877765
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0032 Score=64.55 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=63.7
Q ss_pred chhhHHHHHHhhCCCCCCCCCCCCCCCcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHH
Q 010589 2 SQGLVAITLSAVLPGLRPPPCPTQKNCREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFN 81 (506)
Q Consensus 2 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~ 81 (506)
++|+.+..+.+.+...- +....+..+..++.+++.|.|..++...++++++-+++.. .+|= +
T Consensus 82 ~lgL~l~avg~~lF~pA------------a~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a---~~rl---n 143 (422)
T COG0738 82 VLGLLLYAVGAALFWPA------------ASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA---AFRL---N 143 (422)
T ss_pred HHHHHHHHHHHHHHhhh------------hhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH---HHHH---H
Confidence 56788777777555421 3456788899999999999999999999999999987531 2332 3
Q ss_pred HHHHHHHHHHHHHhhHhhhhcc
Q 010589 82 WYYFCMGIATLTALTVVVYIQD 103 (506)
Q Consensus 82 ~fy~~iNiG~~i~~~~~~~l~~ 103 (506)
+---...+|++++|.+++++..
T Consensus 144 l~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 144 LAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 3344577899999999988766
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0017 Score=67.72 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALY-WIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~-~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.++||+++.=.+.++---+.-....-++++..|+++.++...+. .++.++|..+.+.+.+...+.-
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~------------- 376 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI------------- 376 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-------------
Confidence 35677777779999988899999999999999999988877775 4677888877666665554311
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
.+..-|++++.+.+...++-++..+
T Consensus 377 --G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 377 --GFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred --CcHHHHHHHHHHHHHHHHHheeeec
Confidence 1245578888887777777766654
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.6e-05 Score=75.26 Aligned_cols=138 Identities=13% Similarity=0.111 Sum_probs=95.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..++..+ +.+|.+ +.+-+.+|.++.+++.++.+..
T Consensus 33 g~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 80 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGS----VSDRSN-------PRVFLPIGLILCAIVNLFFGFS--------------------- 80 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhH----HHHhhC-------CeehhHHHHHHHHHHHHHHHHh---------------------
Confidence 45566666777777777666 344543 2234677888888877766653
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccCCCCCcCCCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGT-LVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~-~l~~~~~~~~~~~~~w~~~~~l 428 (506)
.+.++++...++.+++..+..|...+++.+..|++.|+..++++.....+|..+++ .+........ +|
T Consensus 81 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~------ 149 (379)
T TIGR00881 81 -TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY----SW------ 149 (379)
T ss_pred -hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC----Cc------
Confidence 24666777889999999999999999999999999999999999999999999988 3444443210 12
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
...|+..++++++..++.+...
T Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 150 -----HWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred -----hhHHHHHHHHHHHHHHHHheee
Confidence 3345556666655555444443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0018 Score=69.77 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=87.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+|..+...+...+..|+..++ .+|.+ +.+-+.+|.++.+++.++.+..
T Consensus 44 ~~~~~~~~l~~~~~~~~~G~l----~D~~G-------rk~~l~~~~~~~~~~~~~~~~a--------------------- 91 (495)
T PRK14995 44 LWIIDIYSLVMAGMVLPMGAL----GDRIG-------FKRLLMLGGTLFGLASLAAAFS--------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhc-------cHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 567777777777888877774 44443 3334777888888887776652
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQ-SPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~-aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
-++++++...+++|+|.....|.....+.+. .|++.|+..+|++.....+|..+|+.+...+.+
T Consensus 92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2567788888999999999999888877666 588999999999999999999999999887763
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00017 Score=74.06 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=82.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..++ .+|.+ +.+-+..|.++.+++.+..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~~~~~~~~~~--------------------- 102 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPL----ADRIG-------RKRVLLWSILLFSVFTLLCALA--------------------- 102 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHH----HHHhh-------hHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 345555556666666666553 44432 2234566777777776655442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+...+++.+..|++.|+..++++.....+|..+++.+.....
T Consensus 103 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 103 -TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred -cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 245667778899999999999999999999999999999999999999999999988876654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00067 Score=58.24 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=89.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
.+...+..++..|+..++ .+|.+ +.+-+..+..+.+++.+..... .+
T Consensus 4 ~~~~~~~~~~~~~~~g~~----~d~~g-------~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 50 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLL----TDRFG-------RKPVLLVGLFIFVLSTAMFALS----------------------SN 50 (141)
T ss_pred EEeehhHHHHHHhhHHHH----Hhhcc-------hhHHHHHHHHHHHHHHHHHHHh----------------------cc
Confidence 344555666666766653 34432 2233556666666665544431 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGR 432 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~ 432 (506)
.+++....++.+++.....+....++.+..|++.|+..++.+.....+|..+++.+.....+. . .
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~--------~ 115 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-------L--------G 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-------c--------c
Confidence 556667789999999999999999999999999999999999999999999998888766521 1 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 010589 433 LEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 433 ~~~~~~~la~l~~l~~~i~~~ 453 (506)
+...|+..+.+.++..+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 116 WRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 234455555555555554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0049 Score=65.51 Aligned_cols=59 Identities=8% Similarity=-0.007 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVY 100 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~ 100 (506)
+++.+++...+.++| |..-+.....+.+.|+++ +|+.+++++...-|+|..+++.+.+.
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578888889999998 555677778888888765 69999999977778888766655544
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00065 Score=68.86 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.....+.++.-....+.-..++.+..|++.||..+|++....+++..+|+++++...
T Consensus 354 ~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 354 VLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 45566788899999999999999999999999999999999999999999999987665
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00099 Score=68.70 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=85.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+...+..|+..++ .+|.+ +.+-+.++.++.+++.+..+..
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l----~Dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 97 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLW----GDRYG-------RRLPMVTSIVLFSAGTLACGFA--------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhc-------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 456677777777777877764 44543 2233666777777766655442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|+++....+...+++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246667778899999999999999999999999999999999999999999999988877664
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0016 Score=68.00 Aligned_cols=111 Identities=11% Similarity=0.014 Sum_probs=87.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.+ +.+-+..++++.+++.+..+..
T Consensus 58 g~~~~~~~~~~~~~~~~~g~----l~Dr~g-------rr~~~~~~~~~~~~~~~~~~~~--------------------- 105 (394)
T PRK10213 58 GQSVTVTAFVAMFASLFITQ----TIQATD-------RRYVVILFAVLLTLSCLLVSFA--------------------- 105 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhcccC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34455677777777777765 344432 3345778888888877665542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++..-++.+++.....|...+++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 106 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 106 -NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred -ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888899999999999999999999999999999999999999999999998887765
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0068 Score=63.45 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchh
Q 010589 356 LVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWI-AISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLE 434 (506)
Q Consensus 356 li~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l-~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~ 434 (506)
++..-+++|+...+..+.+..++.+.+|++.|+.++|++.. ..++|..+|..+++.+.+. +.. -.--.+.
T Consensus 304 ~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~-------~g~--~~~~~~~ 374 (400)
T PF03825_consen 304 QLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA-------FGA--RGMFDWS 374 (400)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------hcc--hhhhhHH
Confidence 33444689999999999999999999999999999999876 4688888888888776632 111 0000124
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 010589 435 HYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 435 ~~~~~la~l~~l~~~i~~~~~~ 456 (506)
.+|.+.+++.++..+++++..|
T Consensus 375 ~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 375 AVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 5566666677777777766543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00078 Score=71.74 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=87.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..++ .+|.+ +.+-+.+|.++.+++.++.+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 87 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWL----AKRFG-------TRRLFLISTFAFTLGSLLCGVA--------------------- 87 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHhCc---------------------
Confidence 567777888888888887774 44432 2233667777777776655431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|++.....|....++.+..|++.|+..++++.....+|..+++.+...+.
T Consensus 88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 246677888899999999999999999999999999999999999999999999988877664
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0013 Score=68.72 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=81.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..++ .+|.+ +.+-+.+|.++.+++++...+..
T Consensus 46 g~~~s~~~~~~~~~~~~~G~l----~Dr~g-------~k~~~~~~~~~~~~~~~~~~~~~-------------------- 94 (395)
T PRK10054 46 GYAMTIALTIGVVFSLGFGIL----ADKFD-------KKRYMLLAITAFASGFIAIPLVN-------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhcC-------cchhHHHHHHHHHHHHHHHHHHh--------------------
Confidence 455566666677777777763 44443 22346678777777777665532
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+..+....+.+.+.....|...+.+.+..|++.|+..+|+......+|..+++.+.....
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455667787877788888899999999999999999999999999999988887765
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00089 Score=67.81 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=86.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..++ .+|.+ +.+-+..+.++.+++.+....... .+
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~~~--------~~--------- 88 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGAL----ADRYD-------RKKVMIGADLIRAVLVAVLPFVAL--------LG--------- 88 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHH----HHhhc-------hhHHHHHHHHHHHHHHHHHHHHHH--------cC---------
Confidence 456667777777777777663 44443 222356666666666655554321 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++...++.+++..+..|...+++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1356777888899999999999999999999999999999999999999999999998887664
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0017 Score=67.25 Aligned_cols=111 Identities=13% Similarity=0.097 Sum_probs=87.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+.+.+..++..|+..+ +.+|.+ +.+-+.++.++.+++.+..+..
T Consensus 41 g~~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~l~~~~--------------------- 88 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIAL----FSSRYS-------LKHILLFLVALCVIGNAMFTLS--------------------- 88 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHccCc-------cHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 56677788888888888776 345543 3334677888888877766552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|+++....+.....+.+..|++.|+..++.+.....+|..++..++..+.
T Consensus 89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 256777788899999999999988888999999999999999999999999998887776654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00046 Score=73.42 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=82.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
.+.+...+..++..++..+ +.+|.+ +.+-+.+++++.+++.+...... .
T Consensus 80 ~~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~--------------------~ 128 (465)
T TIGR00894 80 LILSSHFYGQIIIQIPVGY----LAGKYV-------FKWSIGIGMFLSSVISIVIPWAA--------------------G 128 (465)
T ss_pred HHHHHHHHHHHHHHcchHH----HHHHhC-------cchhhHHHHHHHHHHHHHHHHHH--------------------H
Confidence 3444555556666666655 345543 22346667777666655543321 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++..-+++|++|....|....++.+..|++.|+.++|++.....+|..+++.+...+.
T Consensus 129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667888899999999999999999999999999999999999999999999998887665
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0024 Score=66.72 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=80.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISV 353 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~ 353 (506)
....+..++..|+..+ +.+|.+ +.+-+..|.++.+++++..... -++
T Consensus 53 ~~~~l~~~~~~~~~G~----l~dr~g-------~k~~l~~~~~~~~~~~~~~~~~----------------------~~~ 99 (400)
T PRK11646 53 GLRQFIQQGLGIFGGA----IADRFG-------AKPMIVTGMLMRAAGFATMAIA----------------------HEP 99 (400)
T ss_pred HHHHHHHHHHHhhhhH----HHHHhC-------chHHHHHHHHHHHHHHHHHHHh----------------------ccH
Confidence 3334444444555555 444543 2233667888888887766542 256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 354 FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 354 ~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
|+++...++.++++....|...+.+.+.+|++.|+..+|.+.....+|..+|+.+.....
T Consensus 100 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 100 WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999999999999999999999999999998887765
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.011 Score=64.65 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHH-HhhHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLT-ALTVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i-~~~~~~~l~~~~g~~~~F~i 113 (506)
+.+.+++...+.++|.|.+-+.....+.+.|+ + +|+.+.++...+.++|+.+ +++..+++.+ +|+..|++
T Consensus 119 s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~ 189 (591)
T PTZ00207 119 SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-S------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFF 189 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH
Confidence 57888888999999999888888888888875 2 5899999999999999975 6666666653 56666665
Q ss_pred hHHHHHH-HHHHHHhc
Q 010589 114 PAIGMVM-SVLAFVFG 128 (506)
Q Consensus 114 ~ai~~~~-~li~f~~~ 128 (506)
.++..++ +++.+.+.
T Consensus 190 l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 190 LMSFALVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHHHHHHhhe
Confidence 5554443 44444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00048 Score=73.52 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=83.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..+ +.+|++ +.+-+.+++++.+++.+..+.... + .
T Consensus 67 g~~~s~~~~~~~~~~~~~G~----l~Dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~---------~--------~ 118 (467)
T PRK09556 67 GMIGLGFSITYGVGKTLVGY----YADGKN-------TKQFLPFLLILSAICMLGFGASLG---------S--------G 118 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhh----HhhccC-------ccchHHHHHHHHHHHHHHHHHHHh---------c--------c
Confidence 34455555555666666665 455543 334567787777777666554310 0 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
..+.+.++...++.|++|.+..|.....+.+..|++.||.++|++.....+|..+++.+....
T Consensus 119 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 119 SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence 135667778889999999999999999999999999999999999999999999988776544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0016 Score=67.42 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=92.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..++..+..++..|+..++ .+|.++ .+-+.+|.++.+++.+.....
T Consensus 42 ~~~~~~~~~~~~~~~~~G~l----~Dr~g~-------r~~l~~~~~~~~i~~~~~~~~---------------------- 88 (392)
T PRK10473 42 IAFSVYLAGMAAAMLFAGKI----ADRSGR-------KPVAIPGAALFIIASLLCSLA---------------------- 88 (392)
T ss_pred HHHHHHHHHHHHHHHhHhHH----HHHhCC-------hHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 44555666666777777774 444321 223566777777776655441
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNR 430 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~ 430 (506)
.+.++++...++++++.....+.....+.+..|++.|+..++.+.....++..+++.+........ +
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~----g--------- 155 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF----P--------- 155 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----C---------
Confidence 245667777889999999999999999999999999999999999988888888888776654211 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 010589 431 GRLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 431 ~~~~~~~~~la~l~~l~~~i~~~ 453 (506)
....|++.++++++..++.+.
T Consensus 156 --~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 156 --WQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH
Confidence 234456666655555544433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0023 Score=70.60 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=70.9
Q ss_pred hH-HHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc----------
Q 010589 36 LG-VLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN---------- 104 (506)
Q Consensus 36 ~~-~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~---------- 104 (506)
++ .+++|..+.++|...+-|--.+.+=|-...+ +-..+++++|..--+|-++|.+++++.-+-
T Consensus 236 ~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~ 309 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG 309 (735)
T ss_pred hHHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence 44 6778999999998888777777665555443 577888999999999999999988886431
Q ss_pred ---------cccchhhhhhHHHHHHHHHHHHhcCcce
Q 010589 105 ---------VGWGLGFGIPAIGMVMSVLAFVFGSPLY 132 (506)
Q Consensus 105 ---------~g~~~~F~i~ai~~~~~li~f~~~~~~~ 132 (506)
-.||++|++++..++++.+.++++-|.+
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 1599999999999999888777765543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.023 Score=60.00 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=96.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCCCC
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLL--DDPKAI 348 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~--~~~~~~ 348 (506)
.+..++.+.+-+..-+-...+.++.||.++. ....-+.+|.++.-+++++..+. ...+..+- +++...
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~f----g~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~ 348 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRGF----GRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLL 348 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc----ccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccccc
Confidence 3444555555555444333334444443221 23334667766666665544331 11111110 110000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
..-+...-...++++|+|+.+....-+....... ++.+..+-+++-+-.++++.++........
T Consensus 349 ~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~--------------- 412 (461)
T KOG3098|consen 349 FTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL--------------- 412 (461)
T ss_pred cccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH---------------
Confidence 0112223445679999999999999999999998 555677778888888888877654432221
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhccccccCccc
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEV 466 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~~ 466 (506)
...+.....+.+.+...+++.++++++..++++.
T Consensus 413 ----l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k~~ 446 (461)
T KOG3098|consen 413 ----LYIYTLGLPIFCVIATTIFFIVAERTQAMEKKLT 446 (461)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2455666778888888999999988876555444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0081 Score=65.00 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-cccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-VGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 113 (506)
+...+++|.++.++|.|+..-.++..++|.-+++ .|+...+.+.+++++|.+++..+.....+. ++||..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 6788999999999999999988888888887654 599999999999999999996554444332 489988887
Q ss_pred hHHHHHHHHHH
Q 010589 114 PAIGMVMSVLA 124 (506)
Q Consensus 114 ~ai~~~~~li~ 124 (506)
..+..++-.+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 77765555444
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00063 Score=71.88 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=94.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+.+++.-.+..|++.+ |+..++ +..+-+..|.+++.+|-+++..++..
T Consensus 74 G~viaa~slg~~i~~liF~~-----Ws~k~~-----~~k~Pli~s~ii~~~g~llY~~l~~~------------------ 125 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGI-----WSNKTG-----SVKKPLIVSFLIAIIGNLLYLALAYV------------------ 125 (488)
T ss_pred hHHHHHHHHHHHhcchhhcc-----cccccC-----CcccCHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 56667789999999999887 333222 23444899999999999998776631
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHhHc--ccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-CcCCC
Q 010589 350 PI-SVFWLVPQYCLHGVAEVFMSVGHLEFLYD--QSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKN-NWLPD 425 (506)
Q Consensus 350 ~~-s~~wli~~~~l~~igEl~~sp~gl~~~~~--~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~-~w~~~ 425 (506)
+. +-|++..++++.|+|-...+.- =.++++ ..++++|.++... ....+|..+|+.+...+.-.- .+| .|+++
T Consensus 126 ~~~~~y~mL~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~--~~~vlg~ilGp~~q~~f~~Lg-~~G~~i~~~ 201 (488)
T KOG2325|consen 126 PNGVKYLMLVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATS--GGFVLGIILGPTIQLAFTPLG-EKGFMILPG 201 (488)
T ss_pred ccchHHHHHHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhh--hHHHHHHHHhHHHHHHHhhhc-CCceEEcCc
Confidence 22 6688999999999995444442 245554 4555555555444 444455555554444332111 123 56664
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 426 RNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 426 ~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
...|+..... |+.+.+.++..++..++.+.-.++
T Consensus 202 ~~~n~YTap~--w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 202 LIFNMYTAPA--WLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred ceEEecchHH--HHHHHHHHHHHHHHHhheeecccC
Confidence 4566543333 445566666666666555543333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.8e-05 Score=77.47 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
.+.++++..+.++|.+..-|...+...|.++++ +|++++++++...++|..+++.+.|++.++.||+..|.+.+
T Consensus 302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 375 (399)
T PRK05122 302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAA 375 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 445666777888888887777777777766543 69999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhcCcc
Q 010589 116 IGMVMSVLAFVFGSPL 131 (506)
Q Consensus 116 i~~~~~li~f~~~~~~ 131 (506)
+..+++++..++.+++
T Consensus 376 ~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 376 LAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHhccc
Confidence 8888877765555543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0038 Score=64.76 Aligned_cols=136 Identities=12% Similarity=0.121 Sum_probs=90.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..++..+...+..|+..++ .+|.+ +.+-+..+.++.+++.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 104 (408)
T PRK09874 58 LVFSITFLFSAIASPFWGGL----ADRKG-------RKIMLLRSALGMGIVMVLMGLA---------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhhhC-------cHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 45556666777777776664 44432 2223556776666666554432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcc
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNR 430 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~ 430 (506)
.+.++++...++.+++..+ .|...+.+.+..|++.|+..++.+.....+|..+++.+...+.... +
T Consensus 105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----~--------- 170 (408)
T PRK09874 105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY----G--------- 170 (408)
T ss_pred hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C---------
Confidence 2466777788888888665 4667788889999999999999999999999998888877664211 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 431 GRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 431 ~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
....|++.+++.++..++..++.
T Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 171 --LRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHh
Confidence 13446666666665555444443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0028 Score=66.33 Aligned_cols=111 Identities=18% Similarity=0.168 Sum_probs=86.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.+ +.+-+.++.++.+++.+..+..
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~--------------------- 103 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGL----LADKFG-------RKPLMMWSIVAYSVGTGLSGLA--------------------- 103 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566677777777777666 455543 3334677888888887766553
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.|+|+....+....++.+..|++.|+.+++++....++|..+++.+.....
T Consensus 104 -~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 104 -SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 246677788899999999999999999999999999999999999999999999887765543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00028 Score=71.87 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=115.9
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
.+++...-.+.-++.-|++..+ ..|.+.+-| |.+|++++..+-++.++.+
T Consensus 108 iG~LFaskA~~qllvnp~~G~l----~~~iGy~ip-------m~~Gl~vmf~sTilFafg~------------------- 157 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNL----IDRIGYKIP-------MVAGLFVMFLSTILFAFGN------------------- 157 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhh----HHHhccccH-------HHHHHHHHHHHHHHHHHcc-------------------
Confidence 3667777778888888887774 344443332 8999999999999888853
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM-RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRN 427 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~-~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ 427 (506)
+.+.++.+=.++|+|..+.+..|++++.+.-|+.. ||.+||.-.-..++|..+|+.++++..+.-+
T Consensus 158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G---------- 224 (464)
T KOG3764|consen 158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG---------- 224 (464)
T ss_pred ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC----------
Confidence 44568889999999999999999999999999876 6999999999999999999999988875321
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 428 LNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 428 ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
++.=|.+++.++++..++-+++.+.++..
T Consensus 225 -----k~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 225 -----KSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred -----CcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 24449999999999998888877654333
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0044 Score=63.14 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=77.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ .+|.+ +.+.+.++.++.+++.+..+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~i~~~~~~~~~-------------------- 88 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFL----VDKFG-------PRYTTTLSLLLLAIPCLWAGLAV-------------------- 88 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 566677777777777777663 44543 22346778888888877665531
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~ 411 (506)
.+.++++...++.+++.... +....++.+..|++.|+..++++.....+|..++..+...
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 14566777888899987765 4577899999999999999999987666666666555543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0058 Score=65.04 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=80.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..|+..+ +.+|.+ +.+.+..++++.+++.+..+..
T Consensus 49 ~~~~~~~~~~~~~~~~~g~----l~d~~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 95 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGW----LADRVG-------VRNIFFTAIVLFTLGSLFCALS---------------------- 95 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhc-------hHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 4455555666666676666 344443 2223556666666666554431
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...+++|+|.....|.....+.+..|++.++..+|.+.....+|..+++.+...+.
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 245667778899999999999999999999999999999999999999999999888887665
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0062 Score=63.32 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=79.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..++..++ .+|.+ +.+-+..+.++.+++.+..++.
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l----~dr~g-------~r~~~~~~~~~~~i~~~l~~~~--------------------- 92 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWL----MEIIP-------LKRQLIFGFALMILAVAGLMFS--------------------- 92 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhh-------HHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 345556666666766766664 34432 2223666777777776655542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
-+.++++...++.++++....+.....+.+..|++.|+..++......++|..+++.+...+
T Consensus 93 -~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 93 -HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred -chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566777889999999999988999999999999999999998888888888887776544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0009 Score=70.30 Aligned_cols=110 Identities=17% Similarity=0.220 Sum_probs=83.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ .+|.+ +.+-+.++.++.+++.+...... .
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l----~d~~g-------rr~~~~~~~~~~~~~~~~~~~~~-------------------~ 123 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWL----SDRFG-------RKKSLLIIALLFVIGAILMGLAA-------------------F 123 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHh----hhhhh-------hHHHHHHHHHHHHHHHHHHHHhc-------------------c
Confidence 456666777777777777764 44443 22346677777777766665421 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVV 409 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~ 409 (506)
..+.++++...++.++|+....+....++.+..|++.|+..++++.....+|..++..+.
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 224456778889999999999999999999999999999999999999999999998887
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0007 Score=75.14 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=92.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH--HHHHh-----------
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIK--RKKVA----------- 336 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~--~~~~~----------- 336 (506)
+++.+.+.+.-.+..++..+ +..|. .+.+.+++|++++++|.++.++.... +++..
T Consensus 71 G~i~s~~~i~~~~~~i~v~~----~~~r~-------~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~ 139 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSY----FGTKL-------HRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS 139 (633)
T ss_pred eeeeehhhHHHHHHHHHHHH----hhccc-------CcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence 56667777777777777665 34443 34556899999999999888775421 11000
Q ss_pred hhcCCCC-C-------------CCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHH
Q 010589 337 ANHHLLD-D-------------PKAII--PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISM 400 (506)
Q Consensus 337 ~~~g~~~-~-------------~~~~~--~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~ai 400 (506)
.+..++. + ..... ...++.++..-+++|+|+....+.+.+++.+..|++.|+.++|++.....+
T Consensus 140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i 219 (633)
T TIGR00805 140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF 219 (633)
T ss_pred cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence 0000110 0 00000 113445667779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 010589 401 GNYIGTLVVTLVH 413 (506)
Q Consensus 401 g~~l~~~l~~~~~ 413 (506)
|..+|.+++..+.
T Consensus 220 G~~lG~llgg~l~ 232 (633)
T TIGR00805 220 GPAFGYLLGSFCL 232 (633)
T ss_pred hhHHHHHHHHHHH
Confidence 9999988887665
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0031 Score=64.04 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=91.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.++| +.+.+|.++.+++.+..+...
T Consensus 41 g~~~s~~~~~~~~~~~~~G~----l~d~~G~r-------~~~~~~~~~~~~~~~~~~~~~-------------------- 89 (377)
T TIGR00890 41 AIWFTLLLIGLAMSMPVGGL----LADKFGPR-------AVAMLGGILYGLGFTFYAIAD-------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHhhhhHH----HHHHcCcc-------chhHHhHHHHHHHHHHHHHHH--------------------
Confidence 45666777777777777766 44554322 236778888888877666532
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
+.+.+....++.++++....+.....+.+..|+ .|+.+++.+.....+|..+++.+....... .
T Consensus 90 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~------ 153 (377)
T TIGR00890 90 --SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL-------E------ 153 (377)
T ss_pred --HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc-------c------
Confidence 455666777899999998888888888777775 599999999999999988765555433210 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
+....|+..++++++..+..+++.
T Consensus 154 --~~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 154 --GVPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhe
Confidence 124556666666666555544443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0098 Score=66.99 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=82.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..++..+ +..|.+ +.+.+.+++++.+++.++.++.
T Consensus 205 g~l~s~~~lG~iiG~li~G~----LsDR~G-------RR~~lii~lil~~i~~ll~afa--------------------- 252 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFFWGG----LADKLG-------RKQCLLICLSVNGFFAFFSSFV--------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566667777777777666 455543 2233566666666665555442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.+.++++...++.|+|.....|....++.+..|++.||..++.+...+.+|..++..++..+
T Consensus 253 -~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 253 -QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24667778889999999999999999999999999999999999999999999888766544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0087 Score=61.86 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=85.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..++ .+|.+ +.+.+.+|.++.+++++..+..
T Consensus 44 G~~~s~~~l~~~~~~~~~g~l----~dr~g-------~k~~~~~~~~~~~~~~~~~~~~--------------------- 91 (381)
T PRK03633 44 GVVSSSYFTGNLVGTLLAGYV----IKRIG-------FNRSYYLASLIFAAGCAGLGLM--------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 556667777777777776664 44443 2234677888888877765542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
-+.++++...++.|++.....|.....+.+..|++.|+..++.+.....+|..+|+.+.....
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 246667778899999999999998888889999999999999999999999999998887654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0035 Score=65.78 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=89.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 010589 272 LSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPI 351 (506)
Q Consensus 272 ~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 351 (506)
..++..+...+..|+... +.+|.+ +.+-+..|+++.+++.+..+.. .
T Consensus 56 ~~s~~~~~~~~~~~~~G~----l~dr~G-------rr~~l~~~~~~~~~~~~~~~~a----------------------~ 102 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGP----LSDRIG-------RRPVLITGALIFTLACAATLFT----------------------T 102 (413)
T ss_pred HHHHHHHHHHHHHHhhhH----HHHHcC-------chHHHHHHHHHHHHHHHHHHHc----------------------C
Confidence 334444555555555444 455553 2234667777777766655441 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
+.++++..-+++|+++.+..+.....+.+..|++.++..++.+.....++..+|+.++....... +|
T Consensus 103 ~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----gw--------- 169 (413)
T PRK15403 103 SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----HW--------- 169 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CH---------
Confidence 56677888899999998878877777778889999999999999999999999988887665211 12
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 010589 432 RLEHYYWLVSGIQVINLVYY 451 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~ 451 (506)
...|++.+++.++..+..
T Consensus 170 --~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 170 --KVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 445666666666554433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0056 Score=64.98 Aligned_cols=107 Identities=10% Similarity=-0.032 Sum_probs=74.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..|+..+ +.+|.+ +.+-+.+|.++.+++.+..++... . .
T Consensus 67 ~~~~~~~i~~~~~~~~~G~----l~Dr~g-------~k~~l~~~~~~~~i~~~~~~~~~~---------~---------~ 117 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGS----VSDRSN-------PRVFLPAGLILAAAVMLFMGFVPW---------A---------T 117 (452)
T ss_pred HHHHHHHHHHHHHHhhhhh----hhhccC-------CchhHHHHHHHHHHHHHHHHhhhc---------c---------c
Confidence 3445555666666666665 455543 223467788888877776665320 0 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHH
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGT 406 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~ 406 (506)
-+.++++...++.++++....|.....+.+..|++.|+..+|++.....+|..+.+
T Consensus 118 ~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 173 (452)
T PRK11273 118 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPP 173 (452)
T ss_pred ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHH
Confidence 24556677778999999988887778888999999999999999998888865433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00023 Score=61.17 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.+++...+.+++.+...+...++..|.++++ +|.+.+++++...++|..+++.+.+++.+..+|+..|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 3566777788888999988899999999998765 5899999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhc
Q 010589 115 AIGMVMSVLAFVFG 128 (506)
Q Consensus 115 ai~~~~~li~f~~~ 128 (506)
++..+++.+...+.
T Consensus 124 ~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 124 AILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHhhc
Confidence 87777666554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0063 Score=64.30 Aligned_cols=144 Identities=14% Similarity=0.093 Sum_probs=93.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..++..+ +.+|.+. .+-+.+|.++.+++.+..+.... .
T Consensus 64 g~~~~~~~~~~~~~~~~~G~----l~dr~g~-------~~~~~~~~~~~~~~~~~~~~~~~------------------~ 114 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGS----VSDRSNP-------RVFLPAGLILSAAVMLLMGFVPW------------------A 114 (438)
T ss_pred HHHHHHHHHHHHHhhhccch----hhhccCC-------ceehHHHHHHHHHHHHHHhcccc------------------c
Confidence 45555666666666666666 4455432 22356677777777666544210 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
..+.+.+....++.++++....+...+.+.+..|++.|+..+|++.....+|..+++.+........ .+|
T Consensus 115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~~w------- 184 (438)
T TIGR00712 115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF---NDW------- 184 (438)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh---hhh-------
Confidence 1234455667788999999888888899999999999999999999999999988876654332110 022
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..-|++.++++++..++.+++.|
T Consensus 185 ----~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 185 ----HAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34466666666665554444443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0039 Score=63.94 Aligned_cols=111 Identities=18% Similarity=0.175 Sum_probs=83.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+...+..|+..+ +.+|.+ +.+.+..|.++.+++.+.....
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~----l~d~~g-------~~~~~~~~~~~~~i~~~~~~~~--------------------- 76 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGP----MADSFG-------RKPVILGGTLVFALAAVACALA--------------------- 76 (377)
T ss_pred HHHHHHHHHHHHHHHHhhch----HHhhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34455666666666666655 344432 2334677888877777766542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.+.++...++.+++.....+...+++.+..|++.|+..++++.....+|..+++.+.....
T Consensus 77 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 77 -QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134556677889999999999999999999999999999999999999999999988876654
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.011 Score=63.17 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=83.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..+ +.+|.+ +.+-+.++.++.+++.+..+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 105 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGA----MGDRYG-------RRLAMVISIVLFSVGTLACGFA--------------------- 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34455555555566666555 445543 2223666777777777666552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+....++.+..|++.|+..++.+.....+|..+++.+...+.
T Consensus 106 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 106 -PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 246677788899999999999999999999999999999999999999999999998887664
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.019 Score=60.86 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhh---
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGF--- 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F--- 111 (506)
+...+.+..++.+++.|..- .....+..-++++ +|+++.+++..+.++|.++++.+++++ ..+||+.-+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHH
Confidence 57788899999999999988 8889999999865 699999999999999999999999995 468888644
Q ss_pred hhhHHHHHHHHHHHHh
Q 010589 112 GIPAIGMVMSVLAFVF 127 (506)
Q Consensus 112 ~i~ai~~~~~li~f~~ 127 (506)
.+....+.+++++-++
T Consensus 186 ~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 186 IISLVFMTFSVFLALF 201 (511)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555566666665444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.014 Score=60.88 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=76.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..|+... +.+|.+ +.+-+.++.++.+++.+..+..
T Consensus 52 ~~~~~~~~~~~~~~~~~G~----l~dr~g-------~r~~l~~~~~~~~~~~~~~~~~---------------------- 98 (406)
T PRK15402 52 TSMTAYLAGGMFLQWLLGP----LSDRIG-------RRPVMLAGVAFFILTCLAILLA---------------------- 98 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------ChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3344555555555565555 445543 2223556777767666554442
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++..+..+...+.+.+..|++.+...+++......++..+++.+.....
T Consensus 99 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 99 QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245567777889999999988999999999999999999999888777778888877766554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0078 Score=62.32 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=83.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..++ .+|.+ +.+-+.+|.+..+++.+....... ... ..
T Consensus 54 g~~~s~~~~~~~i~~~~~G~l----~Dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~------~~~--------~~ 108 (392)
T PRK12382 54 GIAVGIQFLATVLTRGYAGRL----ADQYG-------AKRSALQGMLACGLAGLAYLLAAI------LPV--------SA 108 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhHH----HHhhc-------chHHHHHHHHHHHHHHHHHHhhhc------ccc--------ch
Confidence 456667777777888887774 44443 222356666665555433222110 000 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++..-++.|+|+....|...+.+.+..|++.|+.+++.+.....+|..+++.++....
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 109 PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2356677788899999999999999999999999999999999999888889999888877664
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.015 Score=61.07 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=88.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..+ +.+|.+ ..+-+.+|+++.+++.+.......
T Consensus 41 g~l~s~~~~g~~i~~~~~g~----l~~r~G-------~r~~~~~g~~l~~~g~~l~~~~~~------------------- 90 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAI----FMKKLS-------YKAGILLGLFLYALGAFLFWPAAE------------------- 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------chHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 56777788888888888776 455543 334577888888888766543210
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++...++.++|..+..+....++.+.+|++.++..+++......+|..+++.+...+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245667778899999999999999999999999999999999999999999999988887653
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0051 Score=61.62 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=87.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..++ .+|.+ +.+-+.++.++.+++.+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~~----~d~~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 84 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGYL----SDRFG-------RRRVLLLGLLLFALGSLLLAFA--------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHhC-------CchhhHHHHHHHHHHHHHHHHh---------------------
Confidence 455666777777777777663 44443 2224777888888887766552
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
.+.++++...++.+++..+..+...++..+..|++.|+..++.......+|..+++.+...+.+
T Consensus 85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466777888999999999999999999999999999999999999999999999988876653
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.011 Score=64.81 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=85.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
+.+-+.+|.++.++++++.++.. .+ ....+.|.+....++.|+|+....+.....+.+..| +.
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~---------~~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~ 152 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTF---------QE-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN 152 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh---------cc-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh
Confidence 44567899999999998877731 01 001356667788899999999999988888888887 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 387 RSTAVALYWIAISMGNYIGTLVV-TLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~-~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
||.++|++....++|..+.+.+. .+... +...+++.++++.++..++.+.+.+..
T Consensus 153 RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~-----------------~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 153 RGAVVAIMKTFTGLGSAILGSIQLAFFSD-----------------NTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 89999999999999997644443 33321 125667777887777777666665543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0062 Score=65.07 Aligned_cols=172 Identities=17% Similarity=0.163 Sum_probs=99.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-CCC
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDP-KAI 348 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 348 (506)
+......++.-++..|+..++-+....|.++|. .-+..|.+..++++++++..... ....+ ++. ...
T Consensus 42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRr------p~il~g~~~~~~~l~ll~~~~~~----~~~~~--~~~~~~~ 109 (477)
T TIGR01301 42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRR------PFIAAGAALVAFAVILIGFAADI----GHLFG--DNLDKKT 109 (477)
T ss_pred HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChH------HHHHHHHHHHHHHHHHHHhCchh----hhhcc--ccccccc
Confidence 455667888888888888876554433443221 12445677777777766653210 00000 000 000
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhH--HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMR--STAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR 426 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~--g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~ 426 (506)
.....++.+..+.+..++--...+..-+++.++.|++.| +.+.+......++|+.+|..++.+.... .|++-.
T Consensus 110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~-----~~~~~~ 184 (477)
T TIGR01301 110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY-----KIFPFT 184 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----Hhcccc
Confidence 122234555566666667777777788999999999865 5788888889999999999888764211 112110
Q ss_pred -----CCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 427 -----NLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 427 -----~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
..-..++..-|++-+++.+++.++-++..|.+
T Consensus 185 ~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 185 KTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 00001344556555556666666665555543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0049 Score=66.09 Aligned_cols=142 Identities=11% Similarity=0.076 Sum_probs=95.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++......+...+..++..++ ..|.. .+.+-+.+|.++.+++++..++.
T Consensus 51 g~~~~~~~~~~~~~~~~~G~l----aDr~~------G~~~~l~~~~~~~~~g~~~~~~~--------------------- 99 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWWF----GDRVW------GTKKTMVLGGIVLMLGHFMLAMS--------------------- 99 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHH----HHhhc------chHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 344445555555555555553 33411 13334778888888888766652
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES---MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR 426 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~---~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~ 426 (506)
.+.++++...++.++|+.+..|....++.++.|++ .|+...+.++....+|..+|+.+...+....
T Consensus 100 -~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~---------- 168 (475)
T TIGR00924 100 -IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY---------- 168 (475)
T ss_pred -ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 13445666778899999999999999999988865 4888999999999999999999887775311
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 427 NLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 427 ~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
.+..-|...++.++++.++++...+.+
T Consensus 169 -----g~~~~f~~~~~~~~~~~l~~~~~~~~~ 195 (475)
T TIGR00924 169 -----GYHVGFNLAAVGMVIGLLTFFAGRHML 195 (475)
T ss_pred -----ChHHHHHHHHHHHHHHHHHHHHccccc
Confidence 124445555655556666665555544
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0017 Score=69.71 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=95.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++.+++..+..++..++..+ +..|.++ .+-+.++.++.+++.+..++.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~----l~Dr~Gr-------r~~~~~~~~~~~i~~~~~~~~--------------------- 177 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGY----LSDRFGR-------KKVLLLSTLVTAVSGVLTAFS--------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHH----hhhhccc-------hHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 45667777777887777766 4455432 223566766666666555442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
.+.++++...++.|++.....+....++.+..|++.|+.+++++....++|..+++.+..++. +|
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-------~w------- 242 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-------DW------- 242 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------HH-------
Confidence 256678888899999999999999999999999999999999999999999988887775553 12
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 010589 430 RGRLEHYYWLVSGIQVINLVYY 451 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~ 451 (506)
...|++.++.+++..+.+
T Consensus 243 ----r~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 243 ----RWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 455666666665555544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0037 Score=66.51 Aligned_cols=253 Identities=14% Similarity=0.163 Sum_probs=142.5
Q ss_pred hhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhHHHHHHHHHHHHhcCcceeecCC
Q 010589 58 VAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKP 137 (506)
Q Consensus 58 ~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ai~~~~~li~f~~~~~~~~~~~p 137 (506)
.+.++|...++ +|...+.+-.-++-.|..++|.+++++.+.+|+...|.++++..+++++..++.-|+-.+++.
T Consensus 134 ~a~vadis~~~------~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 134 FAYVADISSEE------ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhheeeccchh------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 33355554433 699999998888999999999999999999999999999999888888765555443222111
Q ss_pred CC-CchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhhhhccccCccCCCCCCCcccccc
Q 010589 138 GG-SPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLAT 216 (506)
Q Consensus 138 ~~-~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~ 216 (506)
.. .+. ++ ..+.+....+.. | +++..+
T Consensus 208 ~~~~~~-----------~~---~~~~~~~~~~~~----------------------~-----------------~~~~~~ 234 (463)
T KOG2816|consen 208 RSDATL-----------RE---LTPGSLDSSHVA----------------------D-----------------AFQSLT 234 (463)
T ss_pred cccccc-----------cc---cCCCcccchhhh----------------------h-----------------hhhhhc
Confidence 10 000 00 000000000000 0 000000
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHhccCCCCcceeC-cc----ccchhhHHHHHHHHHHHHHH
Q 010589 217 VHRVEELKSIIRMLPVWAAGILLVTASSHQH-SFTIQQARTMNTHLTHSFKIP-PA----SLSIFGILTMLIGLALYERI 290 (506)
Q Consensus 217 ~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~-s~~~~~~~~~~~~~~~gf~ip-~~----~~~~~n~l~iiil~pl~~~~ 290 (506)
.+.+.|..+.++.. .....+-...+.. ..+. ..+..+ +|.-. .+ +.+....+..+++.|++.+
T Consensus 235 --~~~~~r~~l~l~l~--~~~~~~~~~~~~~~~~~~----yl~~~f--~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~- 303 (463)
T KOG2816|consen 235 --KVGPDRLLLLLLLV--AFLSSLPEAGGASDVLLL----YLKAKF--GWNKKEFSDLLSLVSILGIISQLLLLPLLSS- 303 (463)
T ss_pred --ccCCCccchHHHHH--HHHHHHHHhcCceeEEEE----EEeeec--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 01222333322222 1122221111111 1100 011111 11110 11 2233344555555554433
Q ss_pred HHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHH
Q 010589 291 FVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFM 370 (506)
Q Consensus 291 ~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~ 370 (506)
..+.. . -+.+|+++-.+++++.++.+ +. |+.-........-...
T Consensus 304 -------~l~~~----~--~i~lGl~~~~~~~~~~af~~----------------------~~-w~~~~~~v~~~~~~~~ 347 (463)
T KOG2816|consen 304 -------ILGEK----R--LISLGLLSEFLQLLLFAFAT----------------------ET-WMMFAAGVVVALAGIV 347 (463)
T ss_pred -------HHhhh----h--HhhHHHHHHHHHHHHHHHhc----------------------cc-hhhhHHHHHHHhhcch
Confidence 22211 1 47789999999998888853 11 4444445555566788
Q ss_pred HHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 371 SVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT 416 (506)
Q Consensus 371 sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~ 416 (506)
.|...+++.+++.++.+|..+++....-++.+.+++.+.+.+...+
T Consensus 348 ~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 348 FPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877665544
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.02 Score=61.73 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=81.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
++.+...+..++..++..+ +.+|.+ +.+-+.+++++.+++.++.+... +. ...
T Consensus 60 ~~~~~~~ig~~ig~~~~g~----l~d~~G-------rr~~~~~~~~~~~v~~~~~~~~~---------~~-------~~~ 112 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGW----LADKLG-------RKRVYGMELIIMIIATVASGLSP---------GS-------SPK 112 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhc-------cHHHHHHHHHHHHHHHHHHHHcc---------Cc-------ccc
Confidence 3455555666666666555 445543 22235667777776665554421 00 001
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.+.++++..-++.|+++....|....++.+.+|++.||.+++++.....+|..++..+...+
T Consensus 113 ~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 113 SVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567888889999999999999999999999999999999999999999999988777544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.056 Score=57.36 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
-+.++++.-++..++.++. .+.+.+...-+++|++|.... ....++++..|++.|++
T Consensus 94 vL~l~~l~Wsl~t~L~~fa----------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r 150 (511)
T TIGR00806 94 VLVLQALSFVCVWLLLLLG----------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR 150 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence 4666777666666666653 257778888899999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 390 AVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 390 ~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++|.+..+..+|..+++.+++++.
T Consensus 151 atsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 151 AAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0047 Score=65.87 Aligned_cols=122 Identities=17% Similarity=0.268 Sum_probs=93.1
Q ss_pred HhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 010589 294 IARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVG 373 (506)
Q Consensus 294 l~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~ 373 (506)
+.+|++ ..+.+..+.++.+++-++.-+.. ..+.+.++..=+++|++|....|.
T Consensus 96 l~~k~G-------~r~v~~~~~~~sa~~t~l~P~aa--------------------~~~~~~~~~~R~lqGl~~g~~~pa 148 (466)
T KOG2532|consen 96 LADKFG-------ARRVFFISGLISALLTLLTPLAA--------------------SIGFYLLLVLRFLQGLGQGVLFPA 148 (466)
T ss_pred HHHHcC-------chHHHHHHHHHHHHHHHHHHHHH--------------------HhcchhhHHHHHHhHHHHhHHHhh
Confidence 566665 34458888888888777665542 234556778889999999999999
Q ss_pred HHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 010589 374 HLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 374 gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~ 453 (506)
.-....+.+|+..|++..++.+....+|+.++..+++..-..+ .+| +..|.+.++++++-.++++.
T Consensus 149 ~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~---~GW-----------~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 149 IGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS---LGW-----------PSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred hhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC---CCC-----------chHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887777665321 145 45566788887777777666
Q ss_pred hhh
Q 010589 454 CAW 456 (506)
Q Consensus 454 ~~~ 456 (506)
+.+
T Consensus 215 ~~~ 217 (466)
T KOG2532|consen 215 FYS 217 (466)
T ss_pred Hhc
Confidence 544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.031 Score=57.90 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=79.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..+ +.+|.+ +.+-+.++.++.+++.+.....
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~----l~Dr~g-------rr~~~~~~~~~~~~~~~~~~~~--------------------- 93 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGP----LSDRVG-------RRPVILVGMSIFILGTLVALFA--------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhh----HHHhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34455566666666666665 344443 2223566777777766554431
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+...++..+..|++.++..++.+.+...++..+++.+.....
T Consensus 94 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 94 -HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred -ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245667777889999988888888889888899999999999999988888888887776654
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.015 Score=60.05 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
++++++..-++.|+||.. .+.....+.+..|++.|+++++++.....+|..++..++..+.... +|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~----gW--------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG----GL--------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----ch---------
Confidence 677888889999999986 4556666788999999999999999999999999998887775321 34
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 432 RLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
...|+..++++++..++..+..|
T Consensus 144 --r~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 144 --QLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566667776666555444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0007 Score=71.26 Aligned_cols=86 Identities=10% Similarity=0.210 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHH-HHHHHHHHHHhhHhhhhccc------cccc
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYY-FCMGIATLTALTVVVYIQDN------VGWG 108 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy-~~iNiG~~i~~~~~~~l~~~------~g~~ 108 (506)
.+.+++...+.+++.+...+....++.|.++++ +|.+++++++ +..++|..+||.++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 455667778888888888899889999998865 5999999997 56789999999999999987 4699
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 010589 109 LGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 109 ~~F~i~ai~~~~~li~f~~ 127 (506)
.+|.++++..+++.+++++
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888776666655443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0042 Score=66.13 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=81.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
+..+...+...+..++..+ +.+|.+ +.+-+.++.++.+++.+..+..+..... ...+ ..
T Consensus 59 ~~~s~~~ig~~~~~~~~G~----l~dr~G-------rr~~~~~~~~l~~i~~~~~~~~~~~~~~--~~~~--------~~ 117 (479)
T PRK10077 59 FCVASALIGCIIGGALGGY----CSNRFG-------RRDSLKIAAVLFFISALGSAWPEFGFTS--IGPD--------NT 117 (479)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhc-------cHHHHHHHHHHHHHHHHHHHhhcccccc--cccc--------ch
Confidence 4455566666677676666 445543 2223667777777776655543210000 0000 01
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
..+++++..-++.|++.....|...+++.+..|++.||.+++++.....+|..++..+....
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22445667779999999999999999999999999999999999999999988887665444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.017 Score=61.53 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=85.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.++ .+-+..|.++.+++.+..+...
T Consensus 57 ~~~~s~~~~~~~~~~~~~G~----l~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~-------------------- 105 (455)
T TIGR00892 57 AWISSIMLAVLYAGGPISSI----LVNRFGC-------RPVVIAGGLLASLGMILASFSS-------------------- 105 (455)
T ss_pred HHHHHHHHHHHHHhhHHHHH----HHHHcCc-------hHHHHhhHHHHHHHHHHHHHhh--------------------
Confidence 44555555556666676655 4555432 2346667777777766655421
Q ss_pred cchHHHHHH-HHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 350 PISVFWLVP-QYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~-~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
+.+.++. .-++.++++....+.....+.+..| +.|+..+|++.....+|..+++.+...+.... +|
T Consensus 106 --~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~----gw------ 172 (455)
T TIGR00892 106 --NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF----GW------ 172 (455)
T ss_pred --hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh----Ch------
Confidence 2333333 3367788888776777777777665 68999999999999999998887776554311 12
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~ 453 (506)
..-|++.++++++..+..++
T Consensus 173 -----r~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 173 -----RGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 44566677766655544433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=69.68 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=81.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+..+++.|+..+ +..|++ +.+-+.++.++.+++.+...+...
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~----l~Dr~g-------rk~~l~~~~~~~~~~~~~~~~~~~------------------- 99 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGF----LADKFS-------KNRVIRIVKLFEVGLTLLIVLAYY------------------- 99 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhh----hccccc-------HHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 34455555666666666666 344443 222344555554444443333210
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.-++++++...++.|++..+..|...+++.+..|++.|+.++|.+.....+|..+|+.++.++.
T Consensus 100 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 100 LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1246677888899999999999999999999999999999999999999999999998887765
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.016 Score=60.40 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=85.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..++ .+|.+ +.+-+..|+++.+++.+..++.
T Consensus 47 g~~~s~~~~~~~l~~~~~g~l----~dr~G-------~r~~l~~~~~l~~~~~~~~~~a--------------------- 94 (393)
T PRK09705 47 ALLTALPVVTMGGLALAGSWL----HQHVS-------ERRSVAISLLLIAVGALMRELY--------------------- 94 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHC---------------------
Confidence 556666777777777777664 44543 3345888999999998887763
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++..-++.|+|+....+...+.+.+..| +.|+.++|.+......|..+++.+.....
T Consensus 95 -~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 95 -PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred -cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245556777899999999999999999888887 67999999999988888888888776554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.07 Score=56.54 Aligned_cols=113 Identities=10% Similarity=-0.005 Sum_probs=83.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..+ +.+|.+ +.+-+..|+++.+++.++......
T Consensus 64 gl~~~~~~~g~~i~~~~~g~----l~dr~G-------~r~~l~~g~~~~~~~~~l~~~~~~------------------- 113 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGI----LMKKLS-------YKAGIITGLFLYALGAALFWPAAE------------------- 113 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 45556677777777777665 455543 333477888888888765432110
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.-+.++++...++.|+|.....+....++.+..|++.+...++.+...+++|..+++.++..+
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135667888899999999999999999999888888887788888888899999888877544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.017 Score=60.24 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=82.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...++.|+..++ ..|.++ .+-+.++.++.+++.+..+..
T Consensus 41 ~~~~~~~~l~~~l~~~~~G~l----aDr~gr-------r~vl~~~~~~~~~~~~~~~~~--------------------- 88 (393)
T PRK11195 41 PLLQMFFVLAYIVLAPFVGAF----ADSFPK-------GRVMFIANGIKLLGCLLMLFG--------------------- 88 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHh----hhccCC-------chhhHHHHHHHHHHHHHHHHH---------------------
Confidence 566677778888888888774 455432 223666777666665544331
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+. +...+++|+++.+..|...+.+.+..|++.|+.++|.+.....+|..+|+.++.+..
T Consensus 89 -~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 89 -IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred -HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 345678999999999999999999999999999999999999999999999987775
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.026 Score=57.58 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=83.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMG-VGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~-iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
+++.+...+..++..|+..+ +.+|.+ +.+++. .+.++.+++.+..+..
T Consensus 36 g~~~~~~~~~~~~~~~~~g~----l~Dr~g-------~r~~~~~~~~~~~~~~~~~~~~~-------------------- 84 (375)
T TIGR00899 36 GLFYTGSAIVGIAVSQLLAT----RSDYQG-------DRKGLILFCCLLAALACLLFAWN-------------------- 84 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhccC-------CchHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 34555666666777777666 344442 222333 3555555554444331
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHH--HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTA--VALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR 426 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~--~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~ 426 (506)
.+.++++..-++++.++....|...+...+..|++.|+.. .+......++|..+++.++......- +|
T Consensus 85 --~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~----~~---- 154 (375)
T TIGR00899 85 --RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF----GF---- 154 (375)
T ss_pred --chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc----cc----
Confidence 2455555555677777777888888888888888777644 56666677788888887776654210 12
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 427 NLNRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 427 ~ln~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
...|++.+.+.++..++.++..|
T Consensus 155 -------~~~f~~~~~~~~~~~~~~~~~~~ 177 (375)
T TIGR00899 155 -------TVMFLTAALAFVLCGVLVWLFLP 177 (375)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 44566666666655555544444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.032 Score=58.18 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=78.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+...+..|+..+ +.+|.+ +.+-+..|.++.+++.+...... . .
T Consensus 51 g~~~~~~~~~~~i~~~~~g~----l~dr~g-------~k~~l~~~~~~~~~~~~~~~~~~---------~---------~ 101 (402)
T TIGR00897 51 ASAFTLYGIAAAISAWISGV----VAEIIG-------PLKTMMIGLLLWCVGHAAFIVFG---------L---------G 101 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHcC-------cHHHHHHHHHHHHHHHHHHHHHh---------c---------c
Confidence 45556677777777777766 344432 33346677777777755432211 0 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGN-YIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~-~l~~~l~~~~ 412 (506)
..+++.++...++.++|.....+.....+.+..|++.|+.++|++....++|. .+++.+....
T Consensus 102 ~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 102 HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12455556678888999888888888888899999999999999999999886 4676665443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.057 Score=56.04 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=77.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+...+..++..+ +.+|.+ +.+-+..+.++.+++.+.....
T Consensus 44 g~~~s~~~~~~~~~~~~~g~----l~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 91 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGP----LSDRYG-------RKPVLLAGLSLFALGSLGMLWV--------------------- 91 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhh----HHhhcC-------CcHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 34455556666666666655 445543 2234666777777666555442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....+...+.+.+..|++.++...+.......++..+++.+...+.
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 154 (401)
T PRK11043 92 -ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL 154 (401)
T ss_pred -cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246667777789999988888888889999999999988888888778888888887776654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.023 Score=59.42 Aligned_cols=116 Identities=14% Similarity=0.004 Sum_probs=83.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+...+..++..|+..+ +.+|.+ +.+-+.++.++.+++++..++... ..
T Consensus 55 g~~~~~~~l~~~~~~~~~G~----l~dr~g-------~~~~l~~~~~~~~~~~~~~~~~~~-------~~---------- 106 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGV----LADRYD-------RKKLILLARGTCGLGFIGLALNAF-------LP---------- 106 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHH----HhhhcC-------CceEEEehHHHHHHHHHHHHHHHH-------cC----------
Confidence 56667777777777777666 344443 222355677777777665543210 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.+++....++.+++..+..+...+.+.+..|++.++..++++.....+|..+|+.+...+.
T Consensus 107 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 1245666677788899999999999999999999999999999999999999999888887654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.018 Score=61.82 Aligned_cols=96 Identities=20% Similarity=0.152 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
|.+-++.--+++|+-|-...|....+....=.++.|+..||+|+.+.++|+.+|+++..-+.....+ ....
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~---------~~~~ 203 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS---------GGLA 203 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC---------CCcC
Confidence 3444666679999999999999999999999999999999999999999999999998775432211 0111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 432 RLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
...+.|.+-++++++.+++.+++.|
T Consensus 204 gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 204 GWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred CceeehhHHHHHHHHHHheEEEEec
Confidence 2356688888888888876666555
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.098 Score=56.32 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHH
Q 010589 286 LYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGV 365 (506)
Q Consensus 286 l~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~i 365 (506)
+...+|-|+..|.+....+ ++..-+.++.++.+++....+... + ..+.+|+....++.++
T Consensus 60 ~~~~l~gpl~Dr~~~~~~G-rrr~~ll~~~i~~~~~~~~~a~~~---------------~----~~~l~~l~~~~~l~~~ 119 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLG-RRRGWLLATQLLLLVAIAAMGFLE---------------P----GTQLRWLAALAVVIAF 119 (491)
T ss_pred HHHHHHHHHHHcccccCCC-CchHHHHHHHHHHHHHHHHHHHcC---------------C----cchHHHHHHHHHHHHH
Confidence 4555666777765211000 112235567777777766655531 0 2356778888889999
Q ss_pred HHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 366 AEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 366 gEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+-....+...+++.+..|++.|+..+++......+|..+++.+...+.
T Consensus 120 ~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 120 CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987776664
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.018 Score=59.42 Aligned_cols=113 Identities=14% Similarity=0.179 Sum_probs=88.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+|.+-|.+|++++++..+..+.. .|.+.+...+++.+.-+....|.....++..-|++
T Consensus 92 npr~fm~~gLilsai~nil~Gfs----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~ 149 (448)
T COG2271 92 NPRYFMAFGLILSAIVNILFGFS----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK 149 (448)
T ss_pred CCceeehHHHHHHHHHHHHHhhh----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc
Confidence 67778999999999999998873 36677788889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVV--TLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~--~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
.||...++|..+..+|..+.+.+. ..+... ++|- .-|++=++++++.+++.+...
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~la~~~~~----~~w~-----------~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALLAFFAFH----GGWR-----------AAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHHHHHHhc----cchh-----------HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988887 333321 0232 235555666666555555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.015 Score=62.58 Aligned_cols=111 Identities=8% Similarity=0.080 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch
Q 010589 273 SIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS 352 (506)
Q Consensus 273 ~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s 352 (506)
.........++.|+..+ +.+|+. .+.+-+.+|.++.+++.+.+++.. ..
T Consensus 56 ~~~~~~~~~~~~~~~G~----laDr~~------G~r~~~~~g~~~~~~g~~~~~~~~---------------------~~ 104 (489)
T PRK10207 56 FGAFAALVYGLISIGGY----VGDHLL------GTKRTIVLGAIVLAIGYFMTGMSL---------------------LK 104 (489)
T ss_pred HHHHHHHHHHHHhhHHH----hhhhcc------chHHHHHHHHHHHHHHHHHHHHhc---------------------cc
Confidence 33344444445555555 344411 234457889999999887776631 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES--MRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~--~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
...+....+++++|+.+..|...+++.++-|++ .|+...+.+++...+|..+|+.++..+..
T Consensus 105 ~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 105 PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111335678899999999999999999999877 45778999999999999999988887763
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.062 Score=54.72 Aligned_cols=62 Identities=6% Similarity=0.043 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+++...+++.++.-.+..|...+++.+.+|++.|+.+.|.......+|..+++.+.....
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666677778888888889999999999999999999999999999999999988876554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.26 Score=51.11 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 361 CLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYT 416 (506)
Q Consensus 361 ~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~ 416 (506)
++.+....-+...+=++..+.+|+...+...|+|.++--.++.+|+.+..++.+.+
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 56667777777888899999999999999999999999999999999999888766
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.024 Score=67.48 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
++|+++..-+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+++++..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888899999999999999999999999999999999999999999999999999987763
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.018 Score=61.90 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHH
Q 010589 285 ALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHG 364 (506)
Q Consensus 285 pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~ 364 (506)
|+-..+.-++..|.+ +.+-+.+++++.+++.+..++...+- .-| ...+++++..-+++|
T Consensus 71 ~ig~~~~G~l~Dr~G-------rr~~l~~~~~l~~i~~~~~a~~~~~~-----~~g---------~~a~~~l~~~R~l~G 129 (490)
T PRK10642 71 PLGGLFFGMLGDKYG-------RQKILAITIVIMSISTFCIGLIPSYA-----TIG---------IWAPILLLLCKMAQG 129 (490)
T ss_pred HHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHhcccHH-----HHH---------HHHHHHHHHHHHHHH
Confidence 333333444566654 33457888888888888777643100 000 112234677889999
Q ss_pred HHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 365 VAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 365 igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
+|+....|.+..++.+..|++.||.+++++.....+|..+++.+..++
T Consensus 130 ~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 130 FSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred hHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888888887666544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.015 Score=64.35 Aligned_cols=146 Identities=10% Similarity=0.162 Sum_probs=90.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHH----HHHHhh-----hcC--------------CC--CCCCC----CccchHH-HH
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIK----RKKVAA-----NHH--------------LL--DDPKA----IIPISVF-WL 356 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~----~~~~~~-----~~g--------------~~--~~~~~----~~~~s~~-wl 356 (506)
.++.+++|.++++++.++.++.... +++... +.. .+ ++++. ..+..+| .+
T Consensus 161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf 240 (735)
T KOG3626|consen 161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF 240 (735)
T ss_pred ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence 5567999999999999988876432 222111 000 00 00011 1122233 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh----cc-cC------CCCCcCCC
Q 010589 357 VPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH----KY-TG------SKNNWLPD 425 (506)
Q Consensus 357 i~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~----~~-~~------~~~~w~~~ 425 (506)
+.+-++.|+|+.-+.+.|.+++=+-+-++..+++.|+.+....+|=.+|.+++++.. +. .. .+.+|+..
T Consensus 241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGA 320 (735)
T KOG3626|consen 241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGA 320 (735)
T ss_pred HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhH
Confidence 567799999999999999999999999999999999999888777777766665544 22 10 01134432
Q ss_pred CCCcccchhHH-HHHHHHHHHHHHHHHHHhhhcccc
Q 010589 426 RNLNRGRLEHY-YWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 426 ~~ln~~~~~~~-~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
-+. |.+.++++++..+.++++=|.+..
T Consensus 321 --------WWlGFLi~g~~~~~~a~p~f~fPk~lp~ 348 (735)
T KOG3626|consen 321 --------WWLGFLICGALLLFSAVPLFFFPKELPK 348 (735)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 222 444556666666666666555444
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00022 Score=77.43 Aligned_cols=132 Identities=11% Similarity=0.149 Sum_probs=3.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHH----HHHHHhh--------
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEI----KRKKVAA-------- 337 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~----~~~~~~~-------- 337 (506)
+++.+.+-+.-+++..++.. +-.| . .+++.+++|.+++++|.++.++-.. +++....
T Consensus 41 G~i~s~~di~~~~~~~~vsy----~g~~----~---hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSY----FGGR----G---HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----Hhhh----c---CCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 44555666666666555554 2222 1 4667899999999999998877432 1111110
Q ss_pred hcCCC---------C---C----CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHH
Q 010589 338 NHHLL---------D---D----PKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMG 401 (506)
Q Consensus 338 ~~g~~---------~---~----~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig 401 (506)
+..++ + + ++.....-.++++.+-++.|+|..-..+.|.+|+=+-++++..+++.|+++....+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 00011 0 0 011112223567778899999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhh
Q 010589 402 NYIGTLVVTLV 412 (506)
Q Consensus 402 ~~l~~~l~~~~ 412 (506)
-.+|.+++...
T Consensus 190 Pa~Gf~lg~~~ 200 (539)
T PF03137_consen 190 PALGFLLGSFC 200 (539)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88776666543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.12 Score=55.44 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
.+..+.++.+++.+..+.. .+.+.++...++.|+++....+ ....+.+..|++.||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~----------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~ 159 (476)
T PLN00028 103 GSAFLLMLTAPAVFCMSLV----------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGT 159 (476)
T ss_pred HHHHHHHHHHHHHHHHHHh----------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeH
Confidence 4566777777766655442 1344555667889999876544 5567888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010589 390 AVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 390 ~~g~~~l~~aig~~l~~~l~~~ 411 (506)
.+|++.....+|..++..+...
T Consensus 160 a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 160 ANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987666666666554433
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=59.70 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHH
Q 010589 309 QRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRS 388 (506)
Q Consensus 309 ~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g 388 (506)
+-+.+|.++.+++.++.+.... .. .......++++...+++|++.....+....++.+..|++.|+
T Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~--------~~------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 131 (394)
T TIGR00883 66 KTLVITLLMMGIGTLLIGLLPS--------YA------TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG 131 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhCCC--------hh------hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch
Confidence 3466788888887766665320 00 000112235667779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 389 TAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 389 ~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+++.+.....+|..+++.+.....
T Consensus 132 ~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 132 FYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776554
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.051 Score=58.65 Aligned_cols=115 Identities=10% Similarity=0.160 Sum_probs=79.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh--h
Q 010589 309 QRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES--M 386 (506)
Q Consensus 309 ~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~--~ 386 (506)
+-+.+|.++.+++....++.. .+.+++....+++++|..+..|...+++.++-|++ .
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~ 147 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR 147 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh
Confidence 347778888888876665421 12334556778899999998898889999988764 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYT 459 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~ 459 (506)
++..+++++....+|..+|+.+...+.+. + ++..-|.+.++..+++.+.+++..++++
T Consensus 148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-------~--------g~~~~F~i~~i~~~i~~i~~~~~~~~~~ 205 (500)
T PRK09584 148 LDGAFTMYYMSINIGSFFSMLATPWLAAK-------Y--------GWSVAFALSVVGMLITVVNFAFCQRWVK 205 (500)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHh-------h--------CHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 45578888999999999999888777531 1 1244455555556666666666555444
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.077 Score=55.25 Aligned_cols=85 Identities=7% Similarity=-0.043 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
.+.++.++.++++...++.. ...+.|++...+++.++......|..-+++.+..|++.|+.
T Consensus 70 ~l~~~~~~~~l~~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~ 130 (402)
T PRK11902 70 WLLLTQVGLAASIAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGA 130 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH
Confidence 36677777777777665531 01346666777778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 390 AVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 390 ~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.++......+|..+++.+...+.
T Consensus 131 ~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 131 GAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999887776554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.54 E-value=9.4e-07 Score=93.49 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhcc---ccccchhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQD---NVGWGLGF 111 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~---~~g~~~~F 111 (506)
+.+.+.++..+.++|.|+.-+....++.+..+++ .|+....++..+.++|.+++.++.-.+.+ +.+|++.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred cccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccc
Confidence 6788889999999999999999999999888765 58888889999999999998876544433 34599999
Q ss_pred hhhHHHHHHHHHH
Q 010589 112 GIPAIGMVMSVLA 124 (506)
Q Consensus 112 ~i~ai~~~~~li~ 124 (506)
.++++..++.++.
T Consensus 175 ~~~~~~~l~~~~~ 187 (451)
T PF00083_consen 175 IFGAIPSLLVLLL 187 (451)
T ss_pred ccccccccccccc
Confidence 8887766554433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.071 Score=55.62 Aligned_cols=100 Identities=11% Similarity=0.046 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC--C-cCCCCCCc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKN--N-WLPDRNLN 429 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~--~-w~~~~~ln 429 (506)
.+++...-.+++..+.-..|+|.|+.....=+...+...|+- ...|+..+..+...........+ + |++
T Consensus 359 ~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll---~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~----- 430 (480)
T KOG2563|consen 359 SVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLL---NLSGQIFGVILVFIMGILAEDLGPPGNTFP----- 430 (480)
T ss_pred eEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeE---EeehhHHHHHHHHHHHHHhhccCCCCCCcc-----
Confidence 345555557788888889999999999876566666666643 33344444433333222111100 1 221
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhccccccCccc
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPLEEV 466 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~~~~ 466 (506)
.. +.++..+.+.+++-.++.+.|+++++|+.
T Consensus 431 ----~~--i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 431 ----AN--IFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred ----ch--hHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 12 23445555566666667788877776654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.27 Score=50.85 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=70.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHH---HHHHHHHHHHHHHHHHHHHHHHhHcccC
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFW---LVPQYCLHGVAEVFMSVGHLEFLYDQSP 383 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~w---li~~~~l~~igEl~~sp~gl~~~~~~aP 383 (506)
+..-+..|.++.+.+..++...-... +. .+ .+ + ..-++.| ....|++.|+|--..+...++++.+.+|
T Consensus 49 RtPyI~~G~~~~~~g~~~ap~a~~~l---~~-~~--~~--~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~ 119 (403)
T PF03209_consen 49 RTPYIWGGTLLQAGGLAIAPFALLLL---AE-SG--QQ--S-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAP 119 (403)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHH---cc-cc--cc--c-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC
Confidence 34457788888888776665543211 00 00 00 0 0122333 4578999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 384 ESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 384 ~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++.|+...++-+...-+|..+++.+.+..-
T Consensus 120 e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 120 EERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999887776443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.22 Score=52.41 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHH
Q 010589 284 LALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLH 363 (506)
Q Consensus 284 ~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~ 363 (506)
.|+-..++-++..|.+ +.+-+.+++++.+++.+..++.... ..-| ..++.+++..-+++
T Consensus 76 ~~ig~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~l~~~R~l~ 134 (432)
T PRK10406 76 RPIGGWLFGRIADKHG-------RKKSMLISVCMMCFGSLVIACLPGY-----ETIG---------TWAPALLLLARLFQ 134 (432)
T ss_pred HHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHHhhcCCc-----hhHH---------HHHHHHHHHHHHHH
Confidence 3444445555666654 3335778888888877766653200 0000 12345677788999
Q ss_pred HHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 364 GVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 364 ~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
|+|+....|....++.+..|++.||.+++++......|..++..+...+.
T Consensus 135 G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 135 GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888776654443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.08 Score=52.03 Aligned_cols=97 Identities=9% Similarity=0.113 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHH
Q 010589 358 PQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYY 437 (506)
Q Consensus 358 ~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~ 437 (506)
....++|++.-++.-.---.+..+.|++.-|.+-|.-.....+|-.+.+.+...+.+.+ |++. .++.||
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~---g~y~--------~le~ff 425 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD---GSYD--------NLEAFF 425 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC---Cchh--------hHHHHH
Confidence 45577777777777767778889999999999999999988888888888887776432 1111 247778
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccCccc
Q 010589 438 WLVSGIQVINLVYYVICAWFYTYKPLEEV 466 (506)
Q Consensus 438 ~~la~l~~l~~~i~~~~~~~y~~~~~~~~ 466 (506)
...+.+++.+..+.+...|+ +..|.+..
T Consensus 426 l~~~~~aL~svgil~~~N~k-q~gnLN~~ 453 (459)
T KOG4686|consen 426 LIIGLMALTSVGILFYLNKK-QSGNLNRK 453 (459)
T ss_pred HHHHHHHHHHHHHHhheecc-ccCCCCCC
Confidence 77777777777666665543 34444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.043 Score=57.55 Aligned_cols=119 Identities=10% Similarity=0.094 Sum_probs=76.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIP 350 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 350 (506)
.+.++..+.-.+..|+..++.+..-+|.+ .....+.+|.++.+++++...... .. ...
T Consensus 39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~G------rrr~~i~~~~~~~~i~~~~~~~~~--------~~--------~~~ 96 (437)
T TIGR00792 39 TLFLVARILDAITDPIMGNIVDRTRTRWG------KFRPWLLIGAIPFSIVLVLLFTTP--------DF--------SAT 96 (437)
T ss_pred HHHHHHHHHHHhccchheEeeecCCCCCC------CcchhHHHhHHHHHHHHHHHHhCC--------CC--------Ccc
Confidence 44455556666666666554332222222 122346678777777766655421 00 012
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQS-PESMRSTAVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~a-P~~~~g~~~g~~~l~~aig~~l~~~l~~~ 411 (506)
...+|.+..+++.+++..+..+.-.++....+ |++.|+...+.......+|..+++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~ 158 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLP 158 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888889999999888887788888877 56889999998888888888777665433
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.15 Score=51.85 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=77.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..+++.+...+..|+..++ .+|.+ +.+.+.+|.++.+++.+.. .
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~-~---------------------- 83 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWL----ARRFG-------EERSVAAGLLLIAAGILIR-S---------------------- 83 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHhC-------chHHHHHHHHHHHHHHHHH-H----------------------
Confidence 566777888888888887774 44543 2233666776666655443 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++...++.++|..+..+.....+.+..|+ .|+.+++.+.....+|..+++.+.....
T Consensus 84 ~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 84 APGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred hccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345566777889999988887777777777764 7999999999999999988887765553
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.44 Score=50.82 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=60.6
Q ss_pred HHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 010589 292 VPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMS 371 (506)
Q Consensus 292 ~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~s 371 (506)
-++..|.+ +.+-+.+++++.++..+..+... ++- ..|.+.++...++.|++ ....
T Consensus 91 G~l~Dr~G-------~R~v~~~~~ll~~i~~~~~~~a~--------~~~---------~~s~~~lli~r~l~Gig-g~~f 145 (462)
T PRK15034 91 SFMVPIFG-------GRRWTVFSTAILIIPCVWLGIAV--------QNP---------NTPFGIFIVIALLCGFA-GANF 145 (462)
T ss_pred HHHHHHhC-------ChHHHHHHHHHHHHHHHHHHHHH--------ccc---------CCCHHHHHHHHHHHHHH-HHhH
Confidence 33566654 33356777777777776665521 000 13567788888999998 5577
Q ss_pred HHHHHHhHcccChhhHHHHHHHHHHHHHHHHHH
Q 010589 372 VGHLEFLYDQSPESMRSTAVALYWIAISMGNYI 404 (506)
Q Consensus 372 p~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l 404 (506)
+.++..+.+..|++.||+++|++.....+|..+
T Consensus 146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l 178 (462)
T PRK15034 146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSV 178 (462)
T ss_pred HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence 889999999999999999999995333344433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.26 Score=53.55 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=84.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+..+....+-.+++.|+...+.+.+-|| +-+...-++.++..+.+++... .|
T Consensus 48 alv~~a~~LP~~Llsl~aG~laDr~drr-----------rili~~~~~~~~~~~~L~~l~~--------~~--------- 99 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALADRFDRR-----------RILILSQLLRALVALLLAVLAF--------FG--------- 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccch-----------HHHHHHHHHHHHHHHHHHHHHH--------hC---------
Confidence 5667778888888888877754333222 2244455444444444443321 12
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..++|.++..-++.+++..+..|.-++.+-++.|++.-..+.++......++..+|+.+++++-
T Consensus 100 ~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 100 LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4677777788899999999999999999999999999999999998888888888887776553
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.49 Score=49.05 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhH--HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMR--STAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~--g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
+.+++.....+.+..+....|...+.+.+..|++-| +.+++......++|..+++.+...+.+.- +|
T Consensus 104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~----gw------- 172 (393)
T PRK15011 104 NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF----SF------- 172 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc----Ch-------
Confidence 344444444445555557788888888777666533 45667888888899999988887775311 12
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..-|++.+++.++..+..+...|
T Consensus 173 ----~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 ----TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence 34466666666655554444333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.098 Score=55.29 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHH
Q 010589 282 IGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYC 361 (506)
Q Consensus 282 il~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~ 361 (506)
+..|+-..+.-++.+|.+ +.+-+.+++++.+++.+..++.... ..-+ ..+++.++..-+
T Consensus 75 ~~~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~~~~~l~~~R~ 133 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSF-----STIG---------WWAPVLLVTLRA 133 (438)
T ss_pred HHHhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcH-----HHHH---------HHHHHHHHHHHH
Confidence 334555555556666654 3344677888888877766653200 0000 011224666778
Q ss_pred HHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 362 LHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 362 l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++|+++....|....++.+..|++.||.+++.......+|..++..+...+.
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988876665543
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.29 Score=53.63 Aligned_cols=136 Identities=16% Similarity=0.242 Sum_probs=86.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 269 ~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
..|+...+.+..-+..|++.++-+-+-|| .-+..|.++..+|.++.+-.+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-------------------
Confidence 36788888888888888888854433333 236778888888877765421
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
+++. ++-..++.++|-...... ...+.+..|.+.|....++..+...+....|+.+....... ++|
T Consensus 130 -~~~~--~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~----~~W------ 195 (599)
T PF06609_consen 130 -NMNT--FIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH----SGW------ 195 (599)
T ss_pred -cHHH--HHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC----CCc------
Confidence 2333 677778888886555543 44578889999998877766655555555566666554321 145
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~ 453 (506)
.+.|++.+++..+++++.++
T Consensus 196 -----Rw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 196 -----RWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred -----chHHHHHHHHHHHHHHHHHH
Confidence 34455556666655554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.19 Score=54.34 Aligned_cols=110 Identities=22% Similarity=0.263 Sum_probs=87.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..++..++...+-|| +-+.++.++..+|.++.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5777777787788877777754433333 23777888888887777663
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
-++++++..-++.|+|-.+.+...--++...+|++.||.+.+.+.+...+|..++..++...
T Consensus 140 -~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 140 -PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred -hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 26788999999999999999999999999999999999999999999999999885444333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.39 Score=49.71 Aligned_cols=116 Identities=5% Similarity=-0.113 Sum_probs=63.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
++..++..+...+..|+..++ ..|.++| +.+..+++..++++........... .
T Consensus 41 g~~~~~~~l~~~i~~~~~G~l----~Dr~grr-------~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 94 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGLI----SDKLGLK-------KHLLWIISGLLVLFAPFFIYVFGPL---------------L 94 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCcH-------HHHHHHHHHHHHHHHHHHHHHhhhH---------------H
Confidence 456777888888888887774 4444321 1233343333333322111100000 0
Q ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISV-FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~-~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+. +..+...++.+++.....|...+++.+..++ ++...|.......+|..+++.++.++.
T Consensus 95 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 95 QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence 0112 2345567788888888888887777665443 334455555556677777777766554
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.036 Score=56.61 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST 389 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~ 389 (506)
.+.+|.+..++++++.+.. .+...++.+=++.|+.-..+++. -+++.+.++++.|++
T Consensus 100 vll~c~~~va~s~ll~~~S----------------------~~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l 156 (451)
T KOG2615|consen 100 VLLACLIGVALSYLLWALS----------------------RNFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPL 156 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccc
Confidence 4778888888888877763 23434556678888888888874 589999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 390 AVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 390 ~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
.|++...+.++|..+|++++.....
T Consensus 157 ~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 157 GMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred eeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999988765
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.0097 Score=62.36 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHH-HHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNW-YYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~-fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
++.+++...+.+++.+...+.....+.+.++++ .+...+.. +.++.++|..+++.+.|++.+..||+..|.+.
T Consensus 315 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~ 388 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence 455556666677777766666667777777644 35555544 66778999999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 010589 115 AIGMVMSVLAFV 126 (506)
Q Consensus 115 ai~~~~~li~f~ 126 (506)
++..++..++.+
T Consensus 389 ~~~~~i~~~~~~ 400 (420)
T PRK09528 389 GGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHH
Confidence 777666555443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.67 Score=49.90 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh--hH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES--MR 387 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~--~~ 387 (506)
-+.+|.++.+++.++++..+ .+..++.....+..+|..+..|...+++.++-|++ .|
T Consensus 78 ~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R 136 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRR 136 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccc
Confidence 36788888888876554311 11122333444555666666676678888888875 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 388 STAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 388 g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
+...++++....+|..+++.+...+.... + +..-|.+.++.++++.+.++...|++
T Consensus 137 ~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----G-----------w~~~F~iaaigm~l~li~~~~~~~~l 192 (493)
T PRK15462 137 DGGFSLMYAAGNVGSIIAPIACGYAQEEY----S-----------WAMGFGLAAVGMIAGLVIFLCGNRHF 192 (493)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHhhh----C-----------hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88999999998899999998887775311 1 23445555555555555655444433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.65 Score=48.88 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch---HHHHHHHHH
Q 010589 285 ALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPIS---VFWLVPQYC 361 (506)
Q Consensus 285 pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s---~~wli~~~~ 361 (506)
|+-..+.-++.+|.+ +.+-+..+.++.+++.+..++.... . ... ..+++..-+
T Consensus 70 ~ig~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~l~~~~~~~--------~---------~~~~~~~~~l~~~R~ 125 (434)
T PRK15075 70 PLGAIVLGAYIDRVG-------RRKGLIVTLSIMASGTLLIAFVPGY--------A---------TIGLAAPLLVLLGRL 125 (434)
T ss_pred hhHHHHHHHHhhhhc-------hHHHHHHHHHHHHHHHHHHHhCCcH--------H---------HHHHHHHHHHHHHHH
Confidence 333344444555554 2334677888777777766653200 0 010 123456668
Q ss_pred HHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 362 LHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 362 l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
+.|+++....|....++.+..|++.|+.+++++.....+|..+++.++..+
T Consensus 126 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 126 LQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred HhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999988888889999999999999999998887777777666665544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.26 Score=52.61 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVV 409 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~ 409 (506)
+...++.+=++.|+...+.....-=|+...||++.||.+..+.-+...+|..++..++
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 4556788889999999999999999999999999999999999999999999987665
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.056 Score=56.53 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=58.1
Q ss_pred CcCCCcchhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHH----HHHHHhhHhhhhcc
Q 010589 28 CREASGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGI----ATLTALTVVVYIQD 103 (506)
Q Consensus 28 ~~~~~~~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNi----G~~i~~~~~~~l~~ 103 (506)
|+++...-+..+..-..++++|.|+=-|..++...+.-.. ++|+...++.+..-+. |+.++.++++....
T Consensus 136 ~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~------~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~ 209 (538)
T KOG0252|consen 136 GTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANK------KTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEK 209 (538)
T ss_pred CCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhh------ccccceeEEEEEecchhHhhccHHHHHHHHHHhc
Confidence 3444444567777788899999999888888776655433 2677766666554444 45555555554433
Q ss_pred c-----------cccchhhhhhHHHHHHHHHHHHhcCc
Q 010589 104 N-----------VGWGLGFGIPAIGMVMSVLAFVFGSP 130 (506)
Q Consensus 104 ~-----------~g~~~~F~i~ai~~~~~li~f~~~~~ 130 (506)
. .=||..|++.+ +.+++++.++.+
T Consensus 210 ~~~~~~~~~~ld~vWRl~~glg~---vpa~~~ly~Rl~ 244 (538)
T KOG0252|consen 210 IFNGPSTYPHLDGVWRIIFGLGA---VPALLVLYFRLK 244 (538)
T ss_pred cCCCCCCchHHHHHHHHHHHHHH---HHHHHHHHhhhc
Confidence 2 34888887544 445555555443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.081 Score=56.70 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchhhh
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLGFG 112 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~F~ 112 (506)
.+.+.+++.-+++++..|...+..-++.+++.|++ +...+|++|.+.--..+++||++.|.+.+..| .|++|.
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 35777888778999999999999999999999976 57999999999999999999999999988776 889999
Q ss_pred hhHHHHHHHHHHHHhc
Q 010589 113 IPAIGMVMSVLAFVFG 128 (506)
Q Consensus 113 i~ai~~~~~li~f~~~ 128 (506)
...+.++++++++...
T Consensus 452 ~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 452 FLLVLFLIGLILLFFV 467 (477)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888888876544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.27 Score=49.45 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
|..+.+..+++.+.|-.+..+....++....|++.++..+++-...+++|..+++.+...+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999998665
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.067 Score=56.59 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccc-hhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccc
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRK-ATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWG 108 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~-~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~ 108 (506)
+.+.+++..++.++|.+..-+...++++|..+.++ ..++++.+..|+.+.++.++|..+|+.++|++-+..||.
T Consensus 318 ~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 318 NVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45667777788999999999999999999987543 224445667889999999999999999999988877774
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.96 Score=48.23 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 358 PQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 358 ~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
..-++.|++--+++....+...++.-+..++.++|++-+..+++..+++.+......
T Consensus 393 ~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~ 449 (488)
T KOG2325|consen 393 SFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT 449 (488)
T ss_pred ehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence 344667777778888888999999999999999999999999999999988876653
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.24 Score=51.09 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh---h
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES---M 386 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~---~ 386 (506)
-+.+|.++..+|++++.+... ... .....+...+..+..++++|..+.-|...++..+|-+++ .
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~-------~~~------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~ 69 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAI-------PPS------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR 69 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHT-------SSS------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred hhhHHHHHHHHHHHHhHHHHh-------cch------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence 367889999999988666431 000 001244566888889999999999999999999998776 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYK 461 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~ 461 (506)
+...-..|+...-+|..++..+...+++.. .+...|++.++.++++.++|+...++|+++
T Consensus 70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~~---------------~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 70 RDSFFNWFYWGINIGSLFSPTLVPYIQQNY---------------GWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhHHHHHHHHhhhhHhhcccchhhcccc---------------chhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 555666778889999999887776665311 235667888888888888888888888776
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.2 Score=45.88 Aligned_cols=60 Identities=8% Similarity=-0.160 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.|+++...++++.+.....|...+++.+ +++.|+...|......++|..+++.+.....
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~ 152 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI 152 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888888887778887777643 3567889999999999999999988776665
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.24 Score=54.21 Aligned_cols=214 Identities=19% Similarity=0.117 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhhH
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIPA 115 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~a 115 (506)
....|+...+...+ +..++|+.++.|+++...- ....+.-+|...|+.||+++++..+. .|++..
T Consensus 59 nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l--~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~ 123 (571)
T KOG1237|consen 59 NLVTYLTLELHASG-GGAANNVNAFGGTQFLLPL--LGAFLADSFLGRYFTINIGSLISLLG------------LFGLTL 123 (571)
T ss_pred HHHHHHHHHhccch-HHHHHHHHHHhhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHH
Confidence 34455555555555 8889999999999998632 12468889999999999999987644 566666
Q ss_pred HHHHHHHHHHHhcCcceeecC-CCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 116 IGMVMSVLAFVFGSPLYVKLK-PGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 116 i~~~~~li~f~~~~~~~~~~~-p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
..++.++..+.+ .+.... ..++|-+....++..++.......-. .+.++++.
T Consensus 124 ~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg------------------------~r~~~~~f 176 (571)
T KOG1237|consen 124 SAMIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGG------------------------IRPCLLAF 176 (571)
T ss_pred HHHhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCC------------------------CCCcchhh
Confidence 666666554433 110000 11222222233333333321110000 00001111
Q ss_pred hhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcc-CCCCcceeCccccc
Q 010589 195 AATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNT-HLTHSFKIPPASLS 273 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~-~~~~gf~ip~~~~~ 273 (506)
.+-. +.+.+.++++. ....+.|..+.|..+.++.+...+.. +.. +|.+-++..+
T Consensus 177 GadQ----------------fd~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~ 231 (571)
T KOG1237|consen 177 GADQ----------------FDELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPT 231 (571)
T ss_pred cccc----------------cCccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHH
Confidence 1000 00111122221 22456777777777766655543332 222 6777778889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHH
Q 010589 274 IFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSS 326 (506)
Q Consensus 274 ~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~ 326 (506)
..|.+.++++.|.... .+. +.| .-.++..++-++.+++.-.-.
T Consensus 232 ~~~~lai~iF~~g~~~-----y~~---~~p--~gsp~t~i~~Vlvaa~~k~~~ 274 (571)
T KOG1237|consen 232 VLNALAILIFLPGFPF-----YRY---KKP--RGSPKTRIGQVLVAAAFKRKA 274 (571)
T ss_pred HHHHHHHHHHHcCcee-----EEe---eCC--CCCchhHHHHHHHHHHHHHhc
Confidence 9999999999887554 222 112 222677788888888776544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.066 Score=56.66 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccc-hhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccc-----
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRK-ATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWG----- 108 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~-~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~----- 108 (506)
+.+.+++++.+.++|.++..+...++.+|..+.++ ..++++.+.+++.+.++..+|..+|+.+.+.+-+..||.
T Consensus 318 ~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~ 397 (448)
T PRK09848 318 SLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQ 397 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 35566777888999999999999999999887543 123345688889999999999999999988876655652
Q ss_pred ---------hh-hhhhHHHHHHHHHHH
Q 010589 109 ---------LG-FGIPAIGMVMSVLAF 125 (506)
Q Consensus 109 ---------~~-F~i~ai~~~~~li~f 125 (506)
.. ..+|++.++++++++
T Consensus 398 ~~~~~~~i~~~~~~~p~~~~~~~~~~~ 424 (448)
T PRK09848 398 TPEVIMGIRTSIALVPCGFMLLAFVII 424 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 245666666666654
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.5 Score=46.78 Aligned_cols=85 Identities=7% Similarity=0.047 Sum_probs=63.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccC-hhhH
Q 010589 309 QRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSP-ESMR 387 (506)
Q Consensus 309 ~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP-~~~~ 387 (506)
.-+.+|.+..++++..+.... +.+ ......|....|++..++.-+....-.++...+++ ++.|
T Consensus 81 p~il~g~i~~~i~~~llf~~p--------~~s--------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eR 144 (460)
T PRK11462 81 PWVLFGALPFGIVCVLAYSTP--------DLS--------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQR 144 (460)
T ss_pred hhHhHHHHHHHHHHHHHHhCC--------CCC--------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHH
Confidence 346678777777776554321 000 01225789999999999999999999999999998 6888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 010589 388 STAVALYWIAISMGNYIGTLVV 409 (506)
Q Consensus 388 g~~~g~~~l~~aig~~l~~~l~ 409 (506)
+..++.......+|..++..+.
T Consensus 145 t~l~s~r~~~~~iG~~~~~~~~ 166 (460)
T PRK11462 145 ISLQSWRFVLATAGGMLSTVLM 166 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888877766554
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.14 E-value=3.2 Score=43.03 Aligned_cols=87 Identities=7% Similarity=0.019 Sum_probs=65.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
...-+..|+.+++++..+..=... .-++-..+...++++.|-.+...++..++..+.|++.
T Consensus 77 yk~gi~lgL~l~avg~~lF~pAa~-------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~ 137 (422)
T COG0738 77 YKAGIVLGLLLYAVGAALFWPAAS-------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES 137 (422)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhh-------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh
Confidence 344588899999988776543210 1234456677899999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
.+.-|.+--...++|..+++.+++..
T Consensus 138 a~~rlnl~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 138 AAFRLNLAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77777777777777777777777544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.85 Score=48.71 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHccc-ChhhHH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQS-PESMRS 388 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~a-P~~~~g 388 (506)
-+.+|.+..++++..+.... + .......+|.+..|++..++.-+..+.-.++...++ +++.|+
T Consensus 79 ~il~g~i~~~i~~~llf~~p----------~------~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~ 142 (473)
T PRK10429 79 WILIGTLANSVVLFLLFSAH----------L------FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRERE 142 (473)
T ss_pred hHhhhhHHHHHHHHHHHcCC----------C------CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHH
Confidence 46678888787765553310 0 000124678888999999999999999999999998 478888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010589 389 TAVALYWIAISMGNYIGTL 407 (506)
Q Consensus 389 ~~~g~~~l~~aig~~l~~~ 407 (506)
...+.=.....+|..+.+.
T Consensus 143 ~l~~~~~~~~~ig~~~~~~ 161 (473)
T PRK10429 143 QLVPYPRFFASLAGFVTAG 161 (473)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877634445555554443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=93.84 E-value=4.8 Score=36.23 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+.+++.-++.|+|+.+.....-.++.+.+.++.+++..|+++.....+..+|.++...+.
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999998888887776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.47 Score=49.82 Aligned_cols=116 Identities=14% Similarity=0.205 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhh----hhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHH
Q 010589 280 MLIGLALYERIFVPIAR----RFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFW 355 (506)
Q Consensus 280 iiil~pl~~~~~~pl~~----r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~w 355 (506)
++...++.|-+.+|+.- |.+.|.. +...-+.+|.++.++++..+.... ..+ ........|
T Consensus 42 i~~~~~i~dai~dp~~G~~sDr~~tr~G--rrrp~~l~g~i~~~~~~~llf~~~--------p~~------~~~~~~~~~ 105 (428)
T PF13347_consen 42 ILLVGRIWDAITDPLIGYLSDRTRTRWG--RRRPWILIGAILLALSFFLLFSPP--------PAG------LSFTAKLVW 105 (428)
T ss_pred HHHHHHHhhhhcCCcEEEEEeeeccccc--ccceEeehhhHHHHHHHHHhhccc--------cch------hhhhhHHHH
Confidence 44445666666666442 2111221 233457789899999888776531 000 001235678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHcccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010589 356 LVPQYCLHGVAEVFMSVGHLEFLYDQSPE-SMRSTAVALYWIAISMGNYIGTLVVTL 411 (506)
Q Consensus 356 li~~~~l~~igEl~~sp~gl~~~~~~aP~-~~~g~~~g~~~l~~aig~~l~~~l~~~ 411 (506)
+...|++..++--+....-.++..+.+++ +.|....+.=.+...+|+.+...+...
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~ 162 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPI 162 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999999999999999985 678888888777777888655444433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=93.16 E-value=5.2 Score=41.16 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccc
Q 010589 353 VFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGR 432 (506)
Q Consensus 353 ~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~ 432 (506)
.+|++...++.++......+..-.++.+..+++.++.+.+.......+|..+|+.+........ +|
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~----gw---------- 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF----GQ---------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CH----------
Confidence 4455555555666666677777777888888888899998888888889999886665443211 12
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010589 433 LEHYYWLVSGIQVINLVYYV 452 (506)
Q Consensus 433 ~~~~~~~la~l~~l~~~i~~ 452 (506)
..-|++.+++.++..+..+
T Consensus 163 -~~~f~~~a~l~~~~~~~~~ 181 (390)
T TIGR02718 163 -RPAFLLVACVPLASLVCVL 181 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHH
Confidence 3456667776665555543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=2.4 Score=43.71 Aligned_cols=60 Identities=10% Similarity=-0.092 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.|.++....+.+++.....|...+.+.+.. +.++..++......++|..+|+.++....
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~ 152 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLV 152 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4555556677788888878887666655543 33555566666666777888877777664
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.0025 Score=67.38 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLV 412 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~ 412 (506)
++++++..-++.|+|-....+....++...+|++.|+.+.+++...+.+|..++..+...+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5677888889999999999999999999999999999999999999999999887776544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.83 E-value=5.9 Score=42.16 Aligned_cols=98 Identities=11% Similarity=0.172 Sum_probs=69.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPE-SMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~-~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
..++.|....|.+++++.-++...--++.....++ +.|....+..+....+|+.+...+...... ++++ -
T Consensus 109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~-------~~g~--~ 179 (467)
T COG2211 109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK-------LFGG--G 179 (467)
T ss_pred CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCC--C
Confidence 35778899999999999999988888888877655 778888998999999998887666543331 2322 1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
+ +...|+....++++++.+.++++.+.-
T Consensus 180 ~--~~~g~~~~~~~~~vi~~i~~l~~~~~v 207 (467)
T COG2211 180 D--KALGYQGTALVLGVIGVILLLFCFFNV 207 (467)
T ss_pred c--chhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 124666666667777666666666543
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.2 Score=44.58 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=59.3
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+-..|+.+..+++++|+++.+.. -+.++-+...++.+++-.+.-.+-+++....-
T Consensus 87 ~y~~Ri~~~~~l~~~g~l~va~~----------------------~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~--- 141 (402)
T PF02487_consen 87 PYWIRILICVALSAAGMLLVAFS----------------------PSVWVRLLGVVLASLSSGLGEVTFLSLTHFYG--- 141 (402)
T ss_pred cchHHHHHHHHHHHHHHhheeec----------------------cchhHHHHHHHHHhhhhhhhHHHHHHHHHhcC---
Confidence 45678999999999999877662 24555667777777777777777777755432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
....+.|-..++.+..+|+.......
T Consensus 142 --~~~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 142 --KSSLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred --ccccccccCCcChhhHHHHHHHHHHH
Confidence 24578899999999999887665554
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.32 Score=50.95 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=63.9
Q ss_pred HHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHH-HHHHHHHHhhHhhhhccccccc------hhhh
Q 010589 40 YISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFC-MGIATLTALTVVVYIQDNVGWG------LGFG 112 (506)
Q Consensus 40 ~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~-iNiG~~i~~~~~~~l~~~~g~~------~~F~ 112 (506)
.++..+-++..|++-.....++.+..+++ .|.++-++|... .-+|..+|..++|++.|++|-+ ..|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~------~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPE------LRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCcc------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 33445578888888888888888888766 478888888764 4589999999999999987644 5566
Q ss_pred hhHHHHHHHHHHHHhcCc
Q 010589 113 IPAIGMVMSVLAFVFGSP 130 (506)
Q Consensus 113 i~ai~~~~~li~f~~~~~ 130 (506)
++++..++..++|.+..|
T Consensus 379 v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 379 VFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 777766666666666544
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.2 Score=41.60 Aligned_cols=119 Identities=11% Similarity=0.091 Sum_probs=75.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
|..-..+|.++..+|+......- ++. ....+.|.+....++.+.|........+--..+--|+ .
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~--------~~~-------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~ 128 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAV--------SGR-------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S 128 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------hCc-------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c
Confidence 55557889999999988776632 111 0123555555666677777777666666666677785 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWF 457 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~ 457 (506)
||.+.|+--...+++..+=..+...+. ++ +.+.|..+++....+..++...+.|.
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~~~~f----------~~------~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIYSAFF----------GD------DPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHHHHHc----------CC------ChHHHHHHHHHHHHHHHHHHhhheec
Confidence 999999988888888776544443332 21 23566777776666555555444443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.1 Score=46.19 Aligned_cols=84 Identities=12% Similarity=0.185 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCccc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRG 431 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~ 431 (506)
+.++.+..=++.|++..-...++..++.+..+++.|+.++.+ ......+..++..+...... +|
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------~W--------- 233 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------DW--------- 233 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------hH---------
Confidence 677788888999999999999999999999999999999999 55544444554444444332 23
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 010589 432 RLEHYYWLVSGIQVINLVYYVI 453 (506)
Q Consensus 432 ~~~~~~~~la~l~~l~~~i~~~ 453 (506)
..+++.....+++..+++++
T Consensus 234 --r~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 234 --RWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred --HHHHHHHHHHHHHHHHHHHc
Confidence 56677777777766665333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.67 E-value=4 Score=43.29 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=67.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChh
Q 010589 306 SCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPES 385 (506)
Q Consensus 306 s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~ 385 (506)
+...|+..++++..+-+++..+... .+. ......+..+...++.+++..+...+.+.++...-|+
T Consensus 73 ~~~~Ri~~~lv~~~~~~~~~~~l~~-------~~~-------~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~- 137 (437)
T TIGR00939 73 PVTVRLLGGLVILLVVVILVMVLVK-------VQT-------SETGFFVTTMASVVIINSGMALLQGSLFGLAGVFPST- 137 (437)
T ss_pred CccchhHHHHHHHHHHHHHHhheee-------ecC-------CcchHHHHHHHHHHHHHhhhhhhcccchhhcccCCHH-
Confidence 5677899987766555544433210 000 0012344555666788999988888888888755443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 386 MRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 386 ~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
+++.+....+++..++..+.-+......+ +. ....+ --.||.+-+++.+++.+.|..+.
T Consensus 138 ----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~--~~----~~~~~-a~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 138 ----YSSAVMSGQGLAGVLTSLAMILVKASGND--SH----GLKKS-ALGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred ----HHHHHHhcchhHHHHHHHHHHHHHHhcCC--cc----chhhh-hhhHHHHHHHHHHHHHHHHHHHh
Confidence 44555566777777766554443321110 00 01111 13444444556666666666543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=90.60 E-value=2.3 Score=45.01 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcc---cChhh
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQ---SPESM 386 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~---aP~~~ 386 (506)
-+.+|.++.+++.+.++.... . ..+........++.++|..+.....=+.+.+. -|++
T Consensus 61 Y~~i~~~~~~~~~~~~~~~~~---------~---------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~- 121 (433)
T PF03092_consen 61 YMIIGWLLGAVSALVLALLPA---------S---------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES- 121 (433)
T ss_pred HHHHHHHHHHHHHHHHHhccc---------c---------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-
Confidence 477787777766666655320 0 11222344445566666666666555555443 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 387 RSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 387 ~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+|..++..+....+|+.++..+++...
T Consensus 122 ~g~lqS~~~~~~~~G~lv~~~l~G~l~ 148 (433)
T PF03092_consen 122 RGDLQSFVWGVRSVGSLVGSLLSGPLL 148 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999999999999999988886654
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.44 E-value=9.5 Score=39.17 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
+.+-+...-++.+.|-..+.+..=+++-+.-|++. +.+||+|..+..++..+++.+......
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~ 159 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQ 159 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHH
Confidence 34557788899999999999988899999999887 999999999999999999888766653
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.00 E-value=5.1 Score=41.69 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=74.5
Q ss_pred ceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 010589 265 FKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDD 344 (506)
Q Consensus 265 f~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~ 344 (506)
+...+++...+..+-++....+ .-..-++..|.+ +.+...+++++..+-.+..++.. ++
T Consensus 44 ~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drfG-------gR~~~~~s~~l~~IP~~~~~~a~--------~~----- 102 (417)
T COG2223 44 FGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRFG-------GRKWTILSMLLLLIPCLGLAFAV--------TY----- 102 (417)
T ss_pred cCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhcccC-------chHHHHHHHHHHHHHHHHHHHHc--------cC-----
Confidence 4456666666666555554332 333334555654 33446677777777777777643 11
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 345 PKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 345 ~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.|.|+++..-++.|++-.- ..+++..+.+.=||+.||.++|++. .--+|..+...+...+.
T Consensus 103 ------~~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~ 163 (417)
T COG2223 103 ------PSTWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA 163 (417)
T ss_pred ------CchHHHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence 2335566666777777443 3457888888999999999999998 55555555544444443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.39 Score=51.89 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i 113 (506)
.++.+..-.+++++..|.+-.+....+.|....+ +...+|++..+...+++++||-++|++.|..| |...|..
T Consensus 387 ~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~ 460 (509)
T KOG2504|consen 387 TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYF 460 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhh
Confidence 4566666677778888888888877888888765 69999999999999999999999999999887 9999999
Q ss_pred hHHHHHHHHHHHHhcC
Q 010589 114 PAIGMVMSVLAFVFGS 129 (506)
Q Consensus 114 ~ai~~~~~li~f~~~~ 129 (506)
+++.++++....+...
T Consensus 461 ~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 461 CGLCFLLSAVLLLILR 476 (509)
T ss_pred cChHHHHHHHHHHHhH
Confidence 9999999887655543
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.2 Score=46.93 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=97.2
Q ss_pred eCccccchhhH---HHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010589 267 IPPASLSIFGI---LTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLD 343 (506)
Q Consensus 267 ip~~~~~~~n~---l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~ 343 (506)
.|+.....+|. +..++.+-++.+ +-.|++ +.+.++.-++++.+|-+..+. ..+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~----lgD~~G-------RK~vYG~~liImIi~t~~~~~----------s~~--- 136 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGW----LGDKFG-------RKKVYGKELIIMIICSALSGL----------SVG--- 136 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH----HHhhhc-------chhhhhHHHHHHHHHHHHhcc----------CCC---
Confidence 66666666655 445556666666 344443 222366667777766653332 122
Q ss_pred CCCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCc
Q 010589 344 DPKAIIPISV-FWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNW 422 (506)
Q Consensus 344 ~~~~~~~~s~-~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w 422 (506)
...+.+. +|+..-=+++|+|-.-=.|.+-+.....|-++.||..+++.+..++.|-..|+.+..++...-.
T Consensus 137 ---~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe----- 208 (538)
T KOG0252|consen 137 ---TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE----- 208 (538)
T ss_pred ---CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh-----
Confidence 1123344 6788888999999998899998888899999999999999999999998888776655443211
Q ss_pred CCCCCCccc----chhHHHHHHHHHHHHHHHHH
Q 010589 423 LPDRNLNRG----RLEHYYWLVSGIQVINLVYY 451 (506)
Q Consensus 423 ~~~~~ln~~----~~~~~~~~la~l~~l~~~i~ 451 (506)
. .+|+. +++..|-+.-+++++=.+..
T Consensus 209 --~-~~~~~~~~~~ld~vWRl~~glg~vpa~~~ 238 (538)
T KOG0252|consen 209 --K-IFNGPSTYPHLDGVWRIIFGLGAVPALLV 238 (538)
T ss_pred --c-cCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 1 23332 67888876666555544433
|
|
| >KOG4255 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.60 E-value=34 Score=34.63 Aligned_cols=97 Identities=10% Similarity=0.231 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cC----CCCCcCC
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKY---TG----SKNNWLP 424 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~---~~----~~~~w~~ 424 (506)
||-.+.+. +.+++.....+++-+-|..+.=|.-.++ ||...+++..+=.++ .+++-. ++ .+++.+|
T Consensus 112 S~afl~L~-F~LAivdc~SnVtFLPFMs~lpp~fL~a-----fFvG~GLSaLlPsll-aLaQGtg~~~C~~n~t~~r~fP 184 (439)
T KOG4255|consen 112 SWAFLSLL-FGLAIVDCTSNVTFLPFMSQLPPAFLNA-----FFVGMGLSALLPSLL-ALAQGTGRLECDLNGTPGRPFP 184 (439)
T ss_pred hHHHHHHH-HHHHHHHhhccchhhhhhhhCChHHHHH-----HHHhccHHHHHHHHH-HHHccCCceeecCCCCCCCCCC
Confidence 44334443 6678888888999999988777765554 444445544443322 233211 11 1122233
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 425 DRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYT 459 (506)
Q Consensus 425 ~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~ 459 (506)
. +. .-..|||++..+++.++..|..+-|.-+
T Consensus 185 ~-rF---s~s~FFl~l~~~~~~alaAF~vL~r~~~ 215 (439)
T KOG4255|consen 185 P-RF---SVSTFFLALFAFTCAALAAFFVLYRLGA 215 (439)
T ss_pred C-Cc---cHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3 11 1268899999999988888877765433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=86.75 E-value=0.17 Score=55.12 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=2.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc----------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN---------- 104 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~---------- 104 (506)
-...+++|-++.++|...+-+.-.+++=|-.+++ +-.-+++++|.+-.+|-.+|.++++..-+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~------~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK------NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeeccccccc------cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 4567778889999999888888888777766654 467788999999999999998888765431
Q ss_pred -----------c-ccchhhhhhHHHHHHHHHHHHhcCccee
Q 010589 105 -----------V-GWGLGFGIPAIGMVMSVLAFVFGSPLYV 133 (506)
Q Consensus 105 -----------~-g~~~~F~i~ai~~~~~li~f~~~~~~~~ 133 (506)
+ .||++|.++++..++..+.++++-|++.
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 2 4999999999988887776666655543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.53 E-value=1.1 Score=47.44 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccCh--hhH
Q 010589 310 RMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPE--SMR 387 (506)
Q Consensus 310 ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~--~~~ 387 (506)
-+..|.+++++|.++++..+ ..+...+..+.+++++|-.+.-|-..++..++=|+ ..|
T Consensus 94 tI~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr 153 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR 153 (498)
T ss_pred HHHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence 48899999999999888731 01234577778888899999999888888877554 236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 010589 388 STAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYTY 460 (506)
Q Consensus 388 g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~ 460 (506)
-...+++++...+|+.+++.+...+.. |.+ +..-|.+.++-+.+++++|++..|+++.
T Consensus 154 D~gFt~fY~~iNiGsl~~p~i~~~~~~-------~~g--------~~~gF~~aavGm~~gl~~f~~~~r~~~~ 211 (498)
T COG3104 154 DGGFTLFYMGINIGSLIAPIITGLLAI-------NYG--------WHVGFGLAAVGMIIGLVIFLLGRRHVKG 211 (498)
T ss_pred CCCccEEEEEeehHHHHHHHHHHHHHH-------hhC--------HHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence 677788888889999999999888763 222 2444666666777777777777665543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.1 Score=44.42 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc---cchhhh
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG---WGLGFG 112 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g---~~~~F~ 112 (506)
.+.-|++..++++...+.....-++++...+++ +.+.+|..-|...|+|-.+.|+++|++.++-| |--+|.
T Consensus 352 ~lsPy~~m~~lGLsysllAcslWP~va~~vpE~------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ff 425 (459)
T KOG4686|consen 352 FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFF 425 (459)
T ss_pred hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHH
Confidence 344466777777777776666777888888876 69999999999999999999999999998755 444666
Q ss_pred hhHHHHHHHHH
Q 010589 113 IPAIGMVMSVL 123 (506)
Q Consensus 113 i~ai~~~~~li 123 (506)
+....|.+...
T Consensus 426 l~~~~~aL~sv 436 (459)
T KOG4686|consen 426 LIIGLMALTSV 436 (459)
T ss_pred HHHHHHHHHHH
Confidence 66666655333
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=85.32 E-value=39 Score=35.48 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+++-..-++.|++-.. -..-+++++..+|++.--.+.+.--.+.-+|..+|++++++.-
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666777776444 4556799999999988888888777888888888888887665
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.95 E-value=37 Score=36.28 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHH
Q 010589 366 AEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQV 445 (506)
Q Consensus 366 gEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~ 445 (506)
+-..+...+++++++.+.++.|....|+-..+.+.+..+++.+++...+ +.+ +...+++-++..+
T Consensus 125 ~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~-------~~~--------~a~~f~ia~~~~~ 189 (463)
T KOG2816|consen 125 GFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK-------FLG--------IALVFLIAAASGI 189 (463)
T ss_pred chhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------hcC--------chHHHHHHHHHHH
Confidence 3445566788889999999999999999999888888888888876653 222 2455555556666
Q ss_pred HHHHHHHHhhh
Q 010589 446 INLVYYVICAW 456 (506)
Q Consensus 446 l~~~i~~~~~~ 456 (506)
++.+...+..|
T Consensus 190 ~~~~y~~~~l~ 200 (463)
T KOG2816|consen 190 LSLLYMLLFLP 200 (463)
T ss_pred HHHHHHhhccc
Confidence 55555555544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=84.38 E-value=60 Score=34.40 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 351 ISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 351 ~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
++...++...++-=+|=-..-.......-+..|++.||...|+=.....+-..+...++-+..
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455555555555556666666666667777899999999999999998888888877765544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=83.09 E-value=21 Score=38.15 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHH---HHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRST---AVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~---~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
+.+...++.+++.....+..-.+..+..+ +.++. .+...+.+..+|..+|..++....
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~ 182 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLL 182 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778888888888888888888877 33333 455555556678888877776655
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.43 E-value=67 Score=33.53 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 010589 355 WLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGN-YIGTLVVTLVH 413 (506)
Q Consensus 355 wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~-~l~~~l~~~~~ 413 (506)
..+.+|.+.+.----....++.|-++.||+...|.+|.+-.--.-+|. .-+.+...+++
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 445678888888888888999999999999999999998765544444 44444444443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.61 E-value=58 Score=33.39 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHH-HHHHHHHHHHhhHhhhhcccccc--chh
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYY-FCMGIATLTALTVVVYIQDNVGW--GLG 110 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy-~~iNiG~~i~~~~~~~l~~~~g~--~~~ 110 (506)
.+++.+++|.++-++++.+..+.-.+....++.+++-+ ++-+..-|+.-- +.+.+-++.+.+++-++.+..+. ...
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaP 197 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAP 197 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcch
Confidence 46889999999999999999999888877666554421 123445454433 22333445555555566666655 678
Q ss_pred hhhhHHHHHHHHHHHHhcC
Q 010589 111 FGIPAIGMVMSVLAFVFGS 129 (506)
Q Consensus 111 F~i~ai~~~~~li~f~~~~ 129 (506)
|.++.+..+++.++.....
T Consensus 198 F~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 198 FDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 8888888877776654433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.84 E-value=6.5 Score=41.52 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCccc---cchhhHHHHHHHHHHHHHHHHHHhhhhcC
Q 010589 224 KSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPPAS---LSIFGILTMLIGLALYERIFVPIARRFTG 300 (506)
Q Consensus 224 k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~~~---~~~~n~l~iiil~pl~~~~~~pl~~r~~~ 300 (506)
++++++..+.+..-+.|+...+..|-+. | .+| +|-.| .....|+.-++..|++....+.+-.|.++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl-~------~lG----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYL-Q------SLG----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHH-H------HcC----CCcccccccccccccccceeccccccccccccccccc
Confidence 3444444445556667776555444333 2 122 44333 34557888888899988876666666654
Q ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 010589 301 NPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKA-IIPISVFWLVPQYCLHGVAEVFMSVGHLEFLY 379 (506)
Q Consensus 301 ~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~ 379 (506)
|+ .-|..|.+..+++++..+...-. +.. +.|++.. .-+..+...++.+.++-++--+..-..=++..
T Consensus 101 RR------PfI~~~s~~i~~~l~Lig~aaDi----g~~--lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~ 168 (498)
T KOG0637|consen 101 RR------PFILAGSLLIAVSLFLIGYAADI----GLL--LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLA 168 (498)
T ss_pred cc------chHHHhhHHHHHHHhhhhhHhhh----hHH--hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHH
Confidence 33 24778888888888776654311 111 1233222 22455555677777887777555556678888
Q ss_pred ccc-ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 380 DQS-PESMRSTAVALYWIAISMGNYIGTLVVT 410 (506)
Q Consensus 380 ~~a-P~~~~g~~~g~~~l~~aig~~l~~~l~~ 410 (506)
+++ |+..+-++++.+-+..++||.+|-.++.
T Consensus 169 Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 169 DLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 885 4444444999999999999999877765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 506 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-13 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 506 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 1e-117 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 3e-13 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-117
Identities = 86/444 (19%), Positives = 169/444 (38%), Gaps = 31/444 (6%)
Query: 32 SGLQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIAT 91
+ Y L L +LGSGGI+P V +F DQ D + + F+ +YF + +
Sbjct: 105 FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD---QSNKSLAQKAFDMFYFTINFGS 161
Query: 92 LTALTVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVA 151
A + + N G + FGIP + M ++ + F G Y+ + P VI +
Sbjct: 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221
Query: 152 AFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDKAATVTEG---ETTNSSP 208
A + + L+ S + L A + G +
Sbjct: 222 ALLTKVE-GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQL 280
Query: 209 PNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIP 268
+ V+ ++S++R+L ++A + + S I QA M
Sbjct: 281 ERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM----VKPQWFE 336
Query: 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFV 328
PA + L +++ + + P R + L++MG G AI L+ IV +
Sbjct: 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTI 393
Query: 329 EIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRS 388
++ + +S+FW + Y L EV +S LEF Y Q+P++M+
Sbjct: 394 QLMMDGGS-------------ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG 440
Query: 389 TAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINL 448
T ++ + +++++GN L V T + + ++ + +++ G ++
Sbjct: 441 TIMSFWTLSVTVGNLWVLLANVSVKSPTVT-EQIVQT-GMSVTAFQMFFFA--GFAILAA 496
Query: 449 VYYVICAWFYTYKPLEEVCEDDKD 472
+ + + A Y + ++
Sbjct: 497 IVFALYARSYQMQDHYRQATGSEN 520
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 62/390 (15%), Positives = 135/390 (34%), Gaps = 63/390 (16%)
Query: 39 LYISLLLSSLGSGGIRPCVVAFAA---DQIDMRKATVANRKWNFFNWYYFCMGIATLTAL 95
L+ S++L +G+G ++P V D+ D R+ F+ + F + + A
Sbjct: 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG-------FSIFVFGINLGAFIAP 163
Query: 96 TVVVYIQDNVGWGLGFGIPAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKK 155
+V Q+ G+ + F + AIGM + +L + FG + +
Sbjct: 164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD---------------PHYLRP 208
Query: 156 RKAIVPEDPRLLYRNGELDSV----ISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNL 211
+ PE+ + L L I V LV N T+ +
Sbjct: 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWM 268
Query: 212 WRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNT---HLTHSFKIP 268
V E ++ +P++ A +L + Q + + T S P
Sbjct: 269 ISSVKVTS-TEHLRVVSYIPLFIAAVLFW-------AIEEQGSVVLATFAAERVDSSWFP 320
Query: 269 PASLSIFGILTMLIGLALYERIFVPIARRFTGNPA--GISCLQRMGVGFAINILATIVSS 326
+ L +++ + ++ + +P + + G+ F + +
Sbjct: 321 VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF-AGLSFLLMAIPG---- 375
Query: 327 FVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386
+ +S WLV + L + E+ +S L +P++
Sbjct: 376 -------ALYGTSGK---------VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF 419
Query: 387 RSTAVALYWIAISMGNYIGTLVVTLVHKYT 416
S +++++++ S+G+ + +VTL + +
Sbjct: 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAKS 449
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 506 | |||
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.87 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.54 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.28 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.07 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.93 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.62 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.26 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.21 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 97.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 97.78 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.09 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 96.25 |
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.87 E-value=9e-23 Score=217.64 Aligned_cols=397 Identities=21% Similarity=0.332 Sum_probs=229.7
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|+..|+..++++|.+++++. .++...|++++.+.++|..++|.+++++.++.||++.|.+.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 467788899999999999999999999999987641 23577889999999999999999999999989999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhhh
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLDK 194 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~~ 194 (506)
++..+++.+.+++.++++.+.+|++++..+..+.+..+.+++..+. +.......... .........+......+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 260 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGK-GNIGLVLALIG---GVSAAYALVNIPTLGIVAG 260 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTH-HHHHHHHHHHH---HHHHHHTGGGTTTTCSSHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhccc-Cccchhhhhhh---hhhhhhhhcccchhhhhhh
Confidence 9888887777666555443333333333222233332222221100 00000000000 0000000000000000000
Q ss_pred hhccccCccCCCCCCCcc-------cccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCccee
Q 010589 195 AATVTEGETTNSSPPNLW-------RLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKI 267 (506)
Q Consensus 195 a~~~~~~~~~~g~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~i 267 (506)
+.+..... .+.....+| +.+++.+.+++|+.+..++++....+++..+.|..+.+..+..+++.+. + .
T Consensus 261 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 335 (524)
T 2xut_A 261 LCCAMVLV-MGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-F 335 (524)
T ss_dssp HHHHHHHH-HHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-S
T ss_pred hhhhhhhh-hcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-e
Confidence 00000000 000000111 0112223455666766777777777888888887776666655554331 1 3
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 010589 268 PPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKA 347 (506)
Q Consensus 268 p~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~ 347 (506)
+.+.+..++.+..++..|+.+++..|..+|++.+. ++.+++.+|+++.++++++.+..+..+ . .
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~------~-------~ 399 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGTIQLMM------D-------G 399 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT------T-------T
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHh------c-------C
Confidence 56777888888899999999987777666653222 567788899999998887765532100 0 0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCC
Q 010589 348 IIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRN 427 (506)
Q Consensus 348 ~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ 427 (506)
....+.+|+++.+++.++++.+..|...+++.+.+|+++||.++|++.....+|+.+++.+...+.+.+. ++|.++.+
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~--~~~~~~~~ 477 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV--TEQIVQTG 477 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH--HHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccccccc
Confidence 1135778899999999999999999999999999999999999999999999999999998877653210 02321000
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHhhhccccccC
Q 010589 428 LNRGRLEHYYWLVSGIQVINLVYYVICAWFYTYKPL 463 (506)
Q Consensus 428 ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~~~~~ 463 (506)
.+. ..+.|++.+++++++.++++++.++++++++
T Consensus 478 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 478 MSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDH 511 (524)
T ss_dssp SCH--HHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 111 1223778888888888888877776655443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=195.11 Aligned_cols=351 Identities=16% Similarity=0.231 Sum_probs=228.1
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.|...|...++++|.+++++ ++|..++++++.+.++|..++|.+++++.++.||++.|+++
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46778889999999999999999999999998764 25889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcceeecC--CCCCc--hhHHHHHHHH--------------HHHhccccCCCCcccccccCCcccc
Q 010589 115 AIGMVMSVLAFVFGSPLYVKLK--PGGSP--LTRLTQVIVA--------------AFKKRKAIVPEDPRLLYRNGELDSV 176 (506)
Q Consensus 115 ai~~~~~li~f~~~~~~~~~~~--p~~~p--l~~~~~vl~~--------------a~~~~~~~~~~~~~~~y~~~~~~~~ 176 (506)
++..+++++.+++.++++...+ +..++ ..+..+.+.. ...... .+. ...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~---~~~-----~~~----- 249 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGW---NSL-----PAY----- 249 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSS---CCT-----THH-----
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccC---ccc-----ccc-----
Confidence 8888887777655433322211 11111 1111110000 000000 000 000
Q ss_pred cccccccccccchhhhhhhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 010589 177 ISVHGTLVHTNQFKWLDKAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQART 256 (506)
Q Consensus 177 ~~~~~~l~~~~~~~~l~~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~ 256 (506)
............... ....|+- ......++++..+.+++++...+++..+.+..+.+..+..+
T Consensus 250 ------------~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4aps_A 250 ------------INLLTIVAIAIPVFY----FAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE 312 (491)
T ss_dssp ------------HHHHHHHHHHHHHHH----HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH
T ss_pred ------------hhhhhHHHHHHHHHH----HHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 000000000000000 0000000 00112345566666778888889999998887765544333
Q ss_pred -hccCCCCcceeCccccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010589 257 -MNTHLTHSFKIPPASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKV 335 (506)
Q Consensus 257 -~~~~~~~gf~ip~~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~ 335 (506)
.+.+. .+.+.+..++.+..++..|+.+++. +|.+++.. ....++.+|+++.++++++.+.....
T Consensus 313 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~----~r~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---- 377 (491)
T 4aps_A 313 RVDSSW-----FPVSWFQSLNPLFIMLYTPFFAWLW----TAWKKNQP--SSPTKFAVGLMFAGLSFLLMAIPGAL---- 377 (491)
T ss_dssp SCCCSS-----SCSGGGTTHHHHHHHHHHHHHHHHH----HHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH----
T ss_pred HhccCc-----cCHHHHhccchHHHHHHHHHHHHHH----HHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 33221 4567888999999999999988854 44433322 56778889999999998887765421
Q ss_pred hhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 336 AANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKY 415 (506)
Q Consensus 336 ~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~ 415 (506)
.+ ...+.+.+|+++.+++.++|+.+..|...+++.+..|++.||.++|++.....+|..+++.+...+.+.
T Consensus 378 ---~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 378 ---YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp ---CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred ---cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 011457888999999999999999999999999999999999999999999999999999888766532
Q ss_pred cCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 010589 416 TGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAWFYT 459 (506)
Q Consensus 416 ~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y~ 459 (506)
.+...|+.++++++++.++++++.++.+
T Consensus 449 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 449 ----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp ----------------STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256677788888888777777665543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=142.50 Aligned_cols=312 Identities=9% Similarity=0.012 Sum_probs=181.6
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccc-cchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVG-WGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i 113 (506)
+.+.++++..+.++|.|...|...+++.|.++++ +|+++++++..+.++|.+++|.+++++.+..| |++.|++
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4667888999999999999999999999999865 69999999999999999999999999888898 9999999
Q ss_pred hHHHHHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhccccCCCCcccccccCCcccccccccccccccchhhhh
Q 010589 114 PAIGMVMSVLAFVFGSPLYVKLKPGGSPLTRLTQVIVAAFKKRKAIVPEDPRLLYRNGELDSVISVHGTLVHTNQFKWLD 193 (506)
Q Consensus 114 ~ai~~~~~li~f~~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~l~~~~~~~~l~ 193 (506)
.++..++..++.++..++ +|.... .+..+...+. .+.+.. .. ..+..+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~----~~~~~~-------------~~~~~~~~~~---~~~~~~-------~~--~~~~~~~~~ 242 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRD----TPQSCG-------------LPPIEEYKND---YPDDYN-------EK--AEQELTAKQ 242 (451)
T ss_dssp HHHHHHHHHHHHHHHCCC----SSTTTC-------------CCSCTTTCCC-------------------------CCTH
T ss_pred HHHHHHHHHHHHHhhccC----CHhhcC-------------CCChhhhccc---ccccch-------hh--hhccccccc
Confidence 888776655544333221 111100 0000000000 000000 00 000000000
Q ss_pred hhhccccCccCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCcceeCc---c
Q 010589 194 KAATVTEGETTNSSPPNLWRLATVHRVEELKSIIRMLPVWAAGILLVTASSHQHSFTIQQARTMNTHLTHSFKIPP---A 270 (506)
Q Consensus 194 ~a~~~~~~~~~~g~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~iif~~~~~q~~s~~~~~~~~~~~~~~~gf~ip~---~ 270 (506)
.. ..++++ .|+++ .+.+...+.+..+....+... ..+....+ .++ +
T Consensus 243 ~~---------------~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g----~~~~~~~ 291 (451)
T 1pw4_A 243 IF---------------MQYVLP------NKLLW---YIAIANVFVYLLRYGILDWSP---TYLKEVKH----FALDKSS 291 (451)
T ss_dssp HH---------------HHHTSS------CHHHH---HHHHHHHHHHHHHHHHHHHHH---HHBTTBSC----CCHHHHH
T ss_pred ch---------------HHHHHc------CHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHhcC----CCHHHHH
Confidence 00 000000 12222 222222233332222222222 12222121 222 3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 271 SLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINI-LATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 271 ~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
.+.....+..++..++..+ +.+|..+ .+.+.+.++.++.. ++++..... .
T Consensus 292 ~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 342 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTLVTIATIVYWMN--------------------P 342 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC--------------------C
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh--------------------c
Confidence 4555556666666666555 3444310 11222344444433 444333220 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccCCCCCcCCCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISM-GNYIGTLVVTLVHKYTGSKNNWLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~ai-g~~l~~~l~~~~~~~~~~~~~w~~~~~l 428 (506)
..+.++.+...++.+++.....+....++.+..|++.||.++|++.....+ |..+++.+...+.+..
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------------ 410 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------------ 410 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------------
T ss_pred ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 124566777778888988888888899999999999999999999999999 9999998887765321
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
.+...|++.+++++++.++++...+
T Consensus 411 ---g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 411 ---GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1356677778877777776666543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-10 Score=117.39 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhc-cccc-------
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQ-DNVG------- 106 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~-~~~g------- 106 (506)
+.+.++++..+.++|.|...+...++++|.++++ +|..+++++..+.++|..+++.+++++. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 189 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 5788899999999999999999999999999876 5999999999999999999999999988 5554
Q ss_pred ------------------cchhhhhhHHHHHHHHHHHHh
Q 010589 107 ------------------WGLGFGIPAIGMVMSVLAFVF 127 (506)
Q Consensus 107 ------------------~~~~F~i~ai~~~~~li~f~~ 127 (506)
|++.|.+.++..++..+.+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 190 DKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899998776665555544443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.5e-11 Score=119.51 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
+.+.++++..+.++|.+...|...+++.|.++++ +|+++++++..+.++|..++|.+++++.++.||++.|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 5777888899999999999999999999999765 5889999999999999999999999999989999999987
Q ss_pred HHHHHHHHH
Q 010589 115 AIGMVMSVL 123 (506)
Q Consensus 115 ai~~~~~li 123 (506)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 776665554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-08 Score=106.95 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc--------c
Q 010589 34 LQLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN--------V 105 (506)
Q Consensus 34 ~~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~--------~ 105 (506)
.+.+.++++..+.++|.|+.-+...++++|..+++ +|+...+++..+..+|.++++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 36788999999999999999999999999998865 699999999999999999998887665443 3
Q ss_pred ccchhhhhhHHHHHHHH
Q 010589 106 GWGLGFGIPAIGMVMSV 122 (506)
Q Consensus 106 g~~~~F~i~ai~~~~~l 122 (506)
+|++.+.+..+..++.+
T Consensus 198 ~~~~~~~~~~~~~~~~~ 214 (491)
T 4gc0_A 198 GWRYMFASECIPALLFL 214 (491)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred hhHHHhhhhhhhhhhhh
Confidence 46666665555444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-08 Score=100.01 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVAL-YWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNR 430 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~-~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~ 430 (506)
+.++++...++.+++.....+....++.+..|++.||..++. +.....+|+.+++.+...+.+..
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-------------- 376 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------------- 376 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--------------
Confidence 344555556677777766677778899999999999999888 56777888888887776554211
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 010589 431 GRLEHYYWLVSGIQVINLVYYVICA 455 (506)
Q Consensus 431 ~~~~~~~~~la~l~~l~~~i~~~~~ 455 (506)
.+...|.+.+++++++.++.+...
T Consensus 377 -g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 377 -GFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred -CcHHHHHHHHHHHHHHHHHHHhhh
Confidence 124556677777777766655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=7.2e-06 Score=84.33 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=102.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ .+|.+ +.+-+.+|.++.+++.+..++....
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~~------------------ 115 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------ 115 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHSC-------HHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHhcC-------chHHHHHHHHHHHHHHHHHHhhhhc------------------
Confidence 456666777777777777664 44432 3335778888888888777662100
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC-cCCCCCC
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNN-WLPDRNL 428 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~-w~~~~~l 428 (506)
..+.++++...++.|++.....|...+++.+..|++.|+.++|++.....+|..+++.+........ + |-
T Consensus 116 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----g~w~----- 186 (451)
T 1pw4_A 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----NDWH----- 186 (451)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT----CCST-----
T ss_pred cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccHH-----
Confidence 0246678888999999999999999999999999999999999999999999999998886643211 2 32
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 429 NRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 429 n~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..|++.++++++..++.++..+
T Consensus 187 ------~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 187 ------AALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp ------TCTHHHHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHHHHHHHhhcc
Confidence 2366666666666655555444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-05 Score=79.19 Aligned_cols=114 Identities=10% Similarity=-0.012 Sum_probs=90.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+..++..|+..++ .+|.+ +.+-+.+|.++.+++.+.......
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~------------------- 113 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGIL----MKKLS-------YKAGIITGLFLYALGAALFWPAAE------------------- 113 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHH----HHHSC-------HHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHH----HHHhc-------chHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence 456677777777777877774 44432 334478888888888877643210
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
..+.++++...++.|+|.....|....++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357778889999999999999999999999999999999999999999999999999887765
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.21 E-value=4e-05 Score=79.95 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=102.9
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhh-hcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARR-FTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r-~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
+++.+...+...+..|+..++ .+| .+ +.+-+.+|.++.+++.+..+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l----~dr~~g-------~r~~~~~~~~~~~~~~~~~~~--------------------- 104 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFV----ADRIIG-------ARPAVFWGGVLIMLGHIVLAL--------------------- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHTSC-------HHHHHHHHHHHHHHHHHHHHS---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hhcccc-------chHHHHHHHHHHHHHHHHHHH---------------------
Confidence 456677777777888877774 444 32 233467788888777766544
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh--HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM--RSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDR 426 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~--~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~ 426 (506)
..+.++++...++.|+|+....|...+++.+..|++. |+..++.+.....+|..+++.+...+.... +
T Consensus 105 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----g----- 174 (491)
T 4aps_A 105 -PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA----G----- 174 (491)
T ss_dssp -CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----C-----
T ss_pred -hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh----h-----
Confidence 1246677888899999999999999999999999988 888899899999999999998887765321 1
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 010589 427 NLNRGRLEHYYWLVSGIQVINLVYYVICAWFY 458 (506)
Q Consensus 427 ~ln~~~~~~~~~~la~l~~l~~~i~~~~~~~y 458 (506)
....|++.++..+++.+++++..+++
T Consensus 175 ------~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 175 ------YHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 24456666666666666666655544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00017 Score=72.31 Aligned_cols=111 Identities=21% Similarity=0.185 Sum_probs=88.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..+ +.+|.++| +-+.+|.++.+++.+..+..
T Consensus 38 g~~~~~~~~~~~~~~~~~g~----l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 85 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGP----ISDRVGRR-------PVILVGMSIFMLATLVAVTT--------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHH----HHTTSCCC-------CCCHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhCCc-------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence 45566677777777777666 45555422 23668888888887776653
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVH 413 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~ 413 (506)
.+.++++...++.+++.....|...+++.+..|++.|+..++.+.....+|..+++.+.....
T Consensus 86 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 86 -SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred -ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 256678888899999999999999999999999999999999999999999999998887664
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00028 Score=74.19 Aligned_cols=140 Identities=15% Similarity=0.081 Sum_probs=96.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhh-cCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRF-TGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAI 348 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~-~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 348 (506)
+++.+...+..++..|+..+ +.+|. + +.+-+.+|.++.+++.+..+..
T Consensus 57 g~~~~~~~~~~~~~~~~~G~----l~dr~~g-------~r~~~~~~~~~~~~~~~~~~~~-------------------- 105 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGW----IADRFFG-------KYNTILWLSLIYCVGHAFLAIF-------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHH----HHTTSSC-------SHHHHHHHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHhc-------chHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 44556666666677777666 34454 2 2334667777777777666541
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHH---HHHHHHHHHHHHHHHHHhhhcccCCCCCcCCC
Q 010589 349 IPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVAL---YWIAISMGNYIGTLVVTLVHKYTGSKNNWLPD 425 (506)
Q Consensus 349 ~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~---~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~ 425 (506)
+.+.++++...++.++++....|...+++.+..|++.|+..++. +.....+|..+++.+...+....
T Consensus 106 -~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--------- 175 (524)
T 2xut_A 106 -EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--------- 175 (524)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS---------
T ss_pred -cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 12567788888999999999999999999999999999877776 88888999999888776654211
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 426 RNLNRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 426 ~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
.....|++.+++.++..+++++..+
T Consensus 176 ------g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 176 ------GAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1245566666666655555544333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0071 Score=62.60 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010589 352 SVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHK 414 (506)
Q Consensus 352 s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~ 414 (506)
+.+.++..-++.|+|+....+.+..++.+.+|++.|+..++.+.....+|..++..+......
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 566788889999999999999999999999999999999999999999999998887766553
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0014 Score=67.10 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHH-HHHHHHHHHHHHhhHhhhhccccccchhhhhh
Q 010589 36 LGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNW-YYFCMGIATLTALTVVVYIQDNVGWGLGFGIP 114 (506)
Q Consensus 36 ~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~-fy~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~ 114 (506)
.+.+.+...+.+++.+.+-+...+...|.++++ .|++++++ +..+.++|..++|.++|++.++.||+..|.+.
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~ 385 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHH
Confidence 344444455556665555555667888888754 58888888 47788899999999999999989999999988
Q ss_pred HHHHHHHHHHHHhcC
Q 010589 115 AIGMVMSVLAFVFGS 129 (506)
Q Consensus 115 ai~~~~~li~f~~~~ 129 (506)
++..+++.++.+...
T Consensus 386 ~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 386 GLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhhh
Confidence 888777776654433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 506 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.42 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.57 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.17 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=2.4e-12 Score=130.24 Aligned_cols=87 Identities=10% Similarity=0.092 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHHHHHHHHHHHHhhHhhhhccc-cccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYYFCMGIATLTALTVVVYIQDN-VGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy~~iNiG~~i~~~~~~~l~~~-~g~~~~F~i 113 (506)
+.+.+++...+.++|.|..-+...++++|.++++ +|+.+++++..+.++|..+++.+.+++... .+|++.|.+
T Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~ 188 (447)
T d1pw4a_ 115 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188 (447)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchh
Confidence 4667888899999999999999999999999865 699999999999999999999888876554 589999998
Q ss_pred hHHHHHHHHHHHHh
Q 010589 114 PAIGMVMSVLAFVF 127 (506)
Q Consensus 114 ~ai~~~~~li~f~~ 127 (506)
.++..++..++.++
T Consensus 189 ~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 189 PAFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHH
Confidence 88766665544333
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=3.3e-09 Score=104.00 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=85.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhh
Q 010589 307 CLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAIIPISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESM 386 (506)
Q Consensus 307 ~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~ 386 (506)
+.+-+.++.++.+++++.... ..+.++++...++.+++..+..+...+++.+..|++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 345 (417)
T d1pv7a_ 288 GKNALLLAGTIMSVRIIGSSF----------------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF 345 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred cccchhhhHHHHHHhhhcccc----------------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH
Confidence 344466777777776665544 2356777888899999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 387 RSTAVALYW-IAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLNRGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 387 ~g~~~g~~~-l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
|+..+|+.. +..++|..+++.+.+.+.+.. .+...|++.++++++..++.+++.|
T Consensus 346 ~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 346 SATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------------GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH---------------CHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999854 567788888888876665321 1255677788888877777777655
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=1.7e-06 Score=86.02 Aligned_cols=144 Identities=10% Similarity=0.029 Sum_probs=102.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 010589 270 ASLSIFGILTMLIGLALYERIFVPIARRFTGNPAGISCLQRMGVGFAINILATIVSSFVEIKRKKVAANHHLLDDPKAII 349 (506)
Q Consensus 270 ~~~~~~n~l~iiil~pl~~~~~~pl~~r~~~~~~~~s~l~ki~iG~il~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 349 (506)
+++.+...+...+..|+..++ ..|.+ +.+-+.+|+++.+++.+..+.+...
T Consensus 62 g~~~s~~~~~~~~~~~~~G~l----~Dr~g-------~r~~~~~~~~~~~~~~~~~~~~~~~------------------ 112 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------ 112 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHSC-------HHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHcC-------chHHHHHHHHHHHHHHhhccccchh------------------
Confidence 456677777777777777764 44432 3334778888888888777664310
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHcccChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCCCCCCc
Q 010589 350 PISVFWLVPQYCLHGVAEVFMSVGHLEFLYDQSPESMRSTAVALYWIAISMGNYIGTLVVTLVHKYTGSKNNWLPDRNLN 429 (506)
Q Consensus 350 ~~s~~wli~~~~l~~igEl~~sp~gl~~~~~~aP~~~~g~~~g~~~l~~aig~~l~~~l~~~~~~~~~~~~~w~~~~~ln 429 (506)
..+.++++...++.++++....|....++.+..|++.|+.++|++.....+|..+++.+......... .|-
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~---~w~------ 183 (447)
T d1pw4a_ 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN---DWH------ 183 (447)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC---CST------
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh---ccc------
Confidence 13566788888999999999999999999999999999999999999999999998877765442110 232
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhh
Q 010589 430 RGRLEHYYWLVSGIQVINLVYYVICAW 456 (506)
Q Consensus 430 ~~~~~~~~~~la~l~~l~~~i~~~~~~ 456 (506)
..|++.+.++++..++.+.+.+
T Consensus 184 -----~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 184 -----AALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp -----TCTHHHHHHHHHHHHHHHHHCC
T ss_pred -----ccchhhhhhHHHHHHHHHHhcc
Confidence 2355556666655555555444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.0001 Score=70.88 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHccCCCCcchhhhhhcccCccchhhhhhHHHHHHHHH-HHHHHHHHHHhhHhhhhccccccchhhhh
Q 010589 35 QLGVLYISLLLSSLGSGGIRPCVVAFAADQIDMRKATVANRKWNFFNWYY-FCMGIATLTALTVVVYIQDNVGWGLGFGI 113 (506)
Q Consensus 35 ~~~~~~~~l~li~~G~G~~kpn~~~~~~d~~~~~~~~~~~~r~~~f~~fy-~~iNiG~~i~~~~~~~l~~~~g~~~~F~i 113 (506)
+.+.+++...+.+++.+...+...+++.|.++++ .|.+.+++++ ++..+|..++|.+.|++.|++||+..|.+
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~ 384 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 4677778888889999999999999999999876 5899999876 46679999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhc
Q 010589 114 PAIGMVMSVLAFVFG 128 (506)
Q Consensus 114 ~ai~~~~~li~f~~~ 128 (506)
.++..++..++.++.
T Consensus 385 ~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 385 LGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888777766664443
|